>input_sequence_81551
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---------------------------------------------ATGTCGTCCGGTGAGGCTACCACTTCTGCTGTTGC
TGCTGCCGCTTCTGTTCCTGAGCTCATCGTCGTTGGCGCTGGCCGGCGTCGACGGGACTGGACAGTACCGGCCGGCCCGG
CGGCTGCTGGTGACGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGTGGACGGCGCGAAGAAGCCCTTCAGGAA
CGCCGGCGCGATCCTGGGGCGCCGGAAGATACCGCGCTCCGTCTGGAATCCCATCCACAACAGATAAAAGGTAC---ACA
CGCACTCTGATGTACCATGTGCCTGGCTGCTTGCTCGTCTCGTGGTGTGCTGTGGTCTGAGTAAGCTTGTTTCTCCTTGA
TTCCAGGCGTAGACGGACTAGATGGCCACAGAGCATC---TAGGCAGTGA------------------------------
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>chr7A_1_TraesCS7A01G435100
TCATGTTTTCCAGCCCGTTTACCATCAAGGTGCATGGCACACTTGACACTCCTGACCATGAAGGTGCGGACTACTGCAAG
TCTGCAACTGTCATCGTGGCTGATTAACCACAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTATCACGGCGGCACTTAACAAAGTGGAGAACATCAATCACCATGTTCCTGCGTG--TGTG
GAAGGTGAAGCCGCATGCAGAAACACATATTTTGACCACACTC------------GATTCGGCCGGTGAAAGCATCGATC
GGCCA------------------TGTTTAATTTCCGGGCG---TCACGTGATCCCGGCAAGACACACATGATTGCGAGCT
TAAGAAATGCATTCCCTGCATGGAACCAACCACTACACGCTGCGATTGCCGCTCTTGGTCCAAGGCAGAAAAGGGTTTTG
CGGTACAGTCAAAGGCGCGGCACGCACATGACAGCGATCACACACACCCCGGCCTGACTTCTCCCGGTGGGAGGCGGATT
AGATAAC-TGGTTAGCACATGATCCAGCCGATCCCACCGGCTTGATCCATCCATTCATTAAGTAGATTAGCACACCCCT-
------------------------GTGTATCGGGTTGGGATCGCACAGTGTCAGCAGCACCCGTTCCGGGGGCCTGTTAG
CGTTATGAATGAATGTTTACGCTGTCAGATACT-ATCTGAACCGAGGA----------TCCGACCCGCAGACCGCCGCTA
GCTAGTTGGTCTCGTAGCCATTCGTATGCTAAGCGATCACACT---GAGTAACCTGCCACCGGAAATAAAACCCACGCAA
AGCCCACGTTAACTCCCACCACCACCTCTCCTCGATCCTTGCTCCCATCCATATTCTCTACCCCTGCCACACCTCACCCA
CTACCTTTCCTT-------CCTTCCTTCCTCGTTGCACACTGCCCCAGAAGAACATACCA---CAGCACCAGAGCAGAGC
AGAGGCCCGACCCCCAAGTAAGATGAGTTCTTCTTCCAGCAGGTTATGTCGTCCGGTGAGGCTACCACTTCTGCTGTTGC
TGCTGCCGCTTCTGTTCCTGAGCTCATCGTCGTTGGCGCTGGCCGGCGTCGACGGGACTGGACAGTACCGGCCGGCCCGG
CGGCTGCTGGTGACGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGTGGACGGCGCGAAGAAGCCCTTCAGGAA
CGCCGGCGCGATCCTGGGGCGCCGGAAGATACCGCGCTCCGTCTGGAATCCCATCCACAACAGATAAAAGGTAC---ACA
CGCACTCTGATGTACCATGTGCCTGGCTGCTTGCTCGTCTCGTGGTGTGCTGTGGTCTGAGTAAGCTTGTTTCTCCTTGA
TTCCAGGCGTAGACGGACTAGATGGCCACAGAGCATC---TAGGCAGTGAGGGCACACACAGGGATAGGAATTAAGAATG
GAGGCACGTACATGGAGGGTCGAGCTTAGGATCGATCGTCGCATCTGTGTGTAAACCCTTTCAATTTTGTAGTTAGTTTT
TATTTTTTTC-AGTTTATAGGCATTTTTTGTGTGTAAGTTTAGCTATATATAGCTAGTCGGTCAGATGGGAGTAACAGCT
GGTTCTTCCCTTCATGTTGTCACTTGTTTCATAGCTGTTACGTTCCTTTGTTGGATTTAGCA-GCTACTGTAATATAACT
TGGTCTGTTGGTGGTACATAGAACAAACTAGTCTCTTCTTTTGATTTCAATAA-TTCCGCACTGCGGCCTCTTAAGAGCT
AACTGACCTTCGCAAAAGAATAGTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATTACATTTAGATTAGTGATCTAAAT
GCTCTTATATTTCTTTACGGAGGGAGTAAGTTGGTTGAAATATATATATATATATATATATATATATATTGCAAAAAAAA
AGAAGTAAAAATACACATAAA-------------GAAAACTTAGTTGTGGGCCTGCTGATAGCAAAATATCTAGGTTGAA
ACGAAAGCTGCAATGTGCCTATTAAGCCCTCGTACGGGAGGGCTCA-TGCTCGACGCTCGTGAAATGGGCAACTTTTGCT
AAAGGTGGTGCGCAAATGAACCGGCCCAATTCGCAGGCGCCGAGCGAAACGAAAAAAAATAAAATTGCTCCCAACCTCGC
GATGCTTACTAGCGACGCTAGCCAGCCAACCTAGGAACTAAGCACGGCTGAAATTCAACGCTATGCTT-AAAGTAACAAC
TAAAAGTGGGAGATCCGGGGGTTT-CAACCTTTTCAACATTTCTTGGAAACATGTGAACAAATTTTTTTAATGCGAACAA
T-GTTTGGAAATCATAAA-AAAATTAGAATATTCTTTTTGAAAACTTAAAAAAATGAAAATGTGATATTTTTC-------
-AAATGTGGATAATTTTAAAAAAGTGTAGTTAAAATACA
>chr7D_165
TTCTTT--------------------------------------------------------------------------
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---------CATCCTCTTCATATGACAGACGCAGTTAACAAAGAGGACAAGATCAATCACCATGTTCCTGCGTGGGTGTG
GAAGGTGAATCTGCAG-----AAAACATATTTTGACTACACTTGAATACATACTTGATTCGGCCGGTAAAAGTGAGCAAC
GGCGCCGATCGATCAGAGATCGGTGTTTAATTTCCAAGCCTCATCACGTGATCCCGGCAAGACACACATGATTGCGAGTT
TAAGAAATGCATTCCCTGTAAGGAACCAACCACTAAACGCTGCGATTGCCGCCCTTGGTCCAAGGCAGAAAAGGGTTTAG
CAGTACAGTCAAAGGCGCAGCACGCACATGACAGCGTTCAC--------------------------------GCAGATT
AGACAATTTGGTTAGCACATGATCGAGCCGATCCCACCGGCTTGATCCG----TTCATTAAGTAGATTAGCACCCCCTAT
GTATCTTGGTTACTCACCAGGATAGTGTATCGGGTTTGGATCGCTCAGTGTCAGTAGCGCCCGAACCGGGGACCTGTTAA
CGTTCTGAATGAATGTTTACGCTGTCAGATTCTCATCTGAACCGACCCTGATCCAGGACCCGACCCGCAGACCGCCGCTA
GCTAGTTGGTCTCGTAGCCA-TCGTATACTAAGCGATCACACTACTGAGTAACCTGCCAGTGGAAATAAAACCCACGCAA
AGCCCACGTTAACTCC-ACCACCACTTCTCCTCGATCCTTGCTCCGATCCACC-------------CCACACCTCACCCA
GCACCAT---TCCTTCCTCCCTTCCTTCCTCGTTGCACACTGTCCCAGAAGAACATACCA---CACCACCAGAGCAGAGC
AGAGACCCGACCCCCCAGTAAGATGAG---TTCTTCCAGCAGGTTATGTCGTCCGGTGACGCTGCCACTTTTGCTGCTGC
TGCTG---CTCCTGTTTCTTACTTCGTCGTCGTTGGCGCTGGCCGACGCGAGC------GGGCAGTACCAGCAGGCCCGG
CGGCTGCTGGTGTCGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGTCGACGGCGCCAAGAAGCCCTTCAGGAA
CGCCGGCGCGATCCTGGGGCGCCGGAAGATACCAAGCTCCCGCTGGAACCCCATCCACAACAGATAAAAGGTACTACACA
CGCACTCTGATGTACCATGTGCCTGGCTGCCTGCTCGTCTCGTGGTGTACGGTGGTCTGAGTAAGCTTGTTTGTCCTTGA
TTTCAGGCGTAGACGGACTAGATGGCCACGGAGCATCATCTAAGCAGTGAGGGCACACACAGGGATAGGAATTAAGAATG
GAGACGCGTAACTGGAGGATCGAGCTTAGGATCGATCGGCGCATATGTGTGTAAACCCTTTCAATTTTGTAGTTAGTTTT
TATTTATTTTTAGTTTATAGGCATTTTTTGTGTGTAAGTTTAGCTATACG--TAGCTA--GTCATATGGGAGTAACAGCT
GGTTCTCCCCTTCATGTTGTCACTTGTTTCATAGCTGTT-----CCTTTGTTGGATTTAGAAGGCTGCTGTAATATAACT
TTGTCTGTTGGTGGTACACGGAACAAACTAGTCTCTTCTTTTGATTTTCGGTAGTTCTGCATTGCGGCCTCTTAACAGCT
AACTGATCTTCGCCAAAAC-------------------------------------------------------------
------------------------AATAAGTTGGTTGAAAAAAAAAAAAATTTTGGCAAAG-------------AAAAGA
AGAAGTGAAAATCCAAATAAAAAGTACACAAAAAGAAAGCGTAGTTGTGGGCCTGCTGATGCCAAAATATCTAGGCCGAA
AGGAAAGCTACAAAACGCCTATTAAGCCCTCCTACGGGGAGAGCTCCTGCCCGACGCTCGCGAAATGAGCAGCTTTAGCT
AAAGGTGGTGCGCAAATGGACCGGCCCTATTCGCAGGCGCTGAGCGAATC--AAAAAAATAATATTGCTCCCAACCTCAC
AATGCTTACTAGCGACGCTAGCTAGCCGAGCTAGGGACTAAGCACGGCTGAAATGCAGCGCTATGCTTAAAAGTAACAAC
TAAAAGTGGGAGATCCGGGGGTTTTCAACTTTTTCAACATTTCTTGGAAAAATGTGGACAAAGTTTCTTAAAAATGTGAA
CGGTTTGGAAATCGTAAATAAAATTCAAATATTCTTTGTGAAAACGTTTAACAAATTTCGAATATTTGAGCAATTTTTCT
GAAATGTGAACAATTTAAAAAAAGTGAAGTTAAAATACA
>chr7B_701
CGA-----------------------------------------------------------------------------
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--------------------------------------------------------GATCCGACCCGCGGACCGCCGCTA
GCTAGTTGGTCTCGTAGCCA-TCGTATACTAAGCGATCACACT---GAGTAACCTGCCGGTGGAAATAAAACCCACGCAA
AGCCCACGTTAACTCCCACCACCACCTCTCCTCGATCCTTGCTCCGATCCATACTC----CCCCTGCCACACCTCACCCA
CTACCCT---TT-------CCTTCCTTCCTCGTTGCACACAGCCCCAGAAGAACATACCACACCACCACCAGAGCAGAGC
AGAGACCCGAGTCCCAATCATGATGAGTTCTTCTTCCGGCAGGTTGTGTCGTCAGGTGACGCTGCCACTCCTCCTCATGC
TGCTGCTGCTCCTGTTCTTGAGTTCGTCATCGTTGGCGTTGGCCGACGTCGACGCGAGTGCGCAGTACCGGCAGGCCCGG
CGGCTGCTGGTGTCGCCGCCGTCGACGCACAAGTCGGAGCAGCGGATGCGGGTCGACGGCGCCAAGAGGCCCTTCAGGAA
CGCCGGCGCGATCCTGGGCCGCCGGAAGATACCAAGCTCCCGCTGGAATCCCATCCACAACAGATAAAAGGTACTACATA
CGCACTCTGATGTA---TGCGCCTGGTTGCTTGCTCGTCTCGTGGTGTGCTGTGGTCTGAGTAAGCTTGTTTGTCCTTGA
TTTCAGGCGTAAACGGACTAGATGGCCACGGAGCATC---TAAGCACTGAGGGCACGCACAGGGATAGGAATTAAGAATG
GAGACACGTACATGGAGGATCGAGCTTAGGATCG----TCGCATCTGTGTGTAAACCCTTTCAATTTTGTAGTTAGTTT-
--TTTTTTTA-AGTTTATAGGCATTTTTTGTGTGTAAGTTTAGCTATATATATAGCTA--GTCGGATGGGAGTAACAGCT
GGTTCTTCCCTACATGTTGTCACTTGTTTCATAGCTGCT-----CCTTTGTTGGATTTAGCA-GCTGCTGTAATATAACT
TGATCTGTCGGTGGTACATGGAACAAACCAGTCTCTTCTTTTGATTTTCGATAGTTCTGGATTGCGGCCTCTTAACAGCT
AACTGATCTTCGCAAAAGAATA----------------------------------------------------------
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>SNPs
-S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-S--S-----S---S--S-SS---S---------S---S--S-----------------------------
---------S-S---SSSSSS--S------------S-----S------------------------S----SSSSS-S-
---SS------------------------------SS--S--------------------------------------S-
------------------S-S--------------S----------------S-------------------------S-
-S----------------S-----------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----
---S--S-----------------S-----------------------SSSSS--------------------S---SS-
------------------------------------S-------S---------S---S----SS------S-------S
----S-------------------------S--------------SSS--------------------------------
--------------------S------S-------------------------------SS-------------------
---------------------------------------------S-------S--SSSS--------------------
-----S-SSS-------------------------------------------------------S--------------
----S------------------------------------------------------S---S------------S---
------S---S-----------S--S-------------------S--------S--S---S----------S-------
------------S----------------------------------------S--------S-----------------
---------------------------------SS-----SS--------------------------------------
------------------------------------------------------------------------S-------
--S--------------------------S------------S-------------------------------------
---S--------------S-------------------------------------------------------------
---------S------------------------------------------SSSSSSSS--------------------
---------------------------------------SSSSS----------------------S-------------
-------------------S---------------------------SSSSS-----S---S-------------S----
------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-S--------------S-S-S-S-S--S-SSSS-S-SSSSSSSSSSSSSS----S-
------S-----S--S----------------------S-S-------------------SS-------------SS---
-S-------S---SSS---------------S------SS-SSSSS----S---------S------S---S----S---
------------------S--------S------------S-------S-SS----------S---------------S-
S---------------------S----S-S-----S------------------S--S----------------------
-----------------------------S--------------------S-----S-----S---S----SSSSSSS--
S------------S-----------SS----------S-------S-SS--S--SSSSSSSS-SS-SSSSSSS-------
--------S-S-----S---------S------------
>forward_523
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-----------------------GCACATGACAGCGATCACAC-------------------------------------
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>reverse_2039
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--------------------------------------ACTTAGTTGTGGGCCTGCTG----------------------
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