Multiple sequence alignment - TraesCS7A01G401900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G401900 chr7A 100.000 2621 0 0 1 2621 581343730 581346350 0.000000e+00 4841.0
1 TraesCS7A01G401900 chr7B 90.791 2237 135 36 437 2621 538863499 538865716 0.000000e+00 2924.0
2 TraesCS7A01G401900 chr7D 89.851 2217 121 46 464 2621 510449522 510451693 0.000000e+00 2752.0
3 TraesCS7A01G401900 chr7D 94.872 117 6 0 321 437 203562874 203562990 1.600000e-42 183.0
4 TraesCS7A01G401900 chr7D 94.872 117 6 0 321 437 579005643 579005759 1.600000e-42 183.0
5 TraesCS7A01G401900 chr3D 85.130 1271 107 30 1394 2618 156246450 156247684 0.000000e+00 1225.0
6 TraesCS7A01G401900 chr3D 85.294 408 38 7 941 1335 156240864 156241262 4.060000e-108 401.0
7 TraesCS7A01G401900 chr3D 86.957 115 10 4 823 933 156239122 156239235 9.850000e-25 124.0
8 TraesCS7A01G401900 chr3B 84.725 982 87 26 823 1774 225258315 225257367 0.000000e+00 924.0
9 TraesCS7A01G401900 chr3B 89.447 199 17 3 1780 1977 225257201 225257006 5.600000e-62 248.0
10 TraesCS7A01G401900 chr3B 85.976 164 8 4 2372 2521 225254711 225254549 7.510000e-36 161.0
11 TraesCS7A01G401900 chr3B 85.417 96 9 4 2528 2618 225253617 225253522 7.720000e-16 95.3
12 TraesCS7A01G401900 chr5D 94.872 117 6 0 321 437 6246175 6246059 1.600000e-42 183.0
13 TraesCS7A01G401900 chr5D 94.872 117 6 0 321 437 58692712 58692596 1.600000e-42 183.0
14 TraesCS7A01G401900 chr5D 94.872 117 6 0 321 437 503346533 503346649 1.600000e-42 183.0
15 TraesCS7A01G401900 chr5D 86.792 106 13 1 182 286 500451886 500451781 1.650000e-22 117.0
16 TraesCS7A01G401900 chr4D 94.872 117 6 0 321 437 19907777 19907893 1.600000e-42 183.0
17 TraesCS7A01G401900 chr1B 94.872 117 6 0 321 437 338941750 338941634 1.600000e-42 183.0
18 TraesCS7A01G401900 chr1B 94.872 117 6 0 321 437 633724098 633724214 1.600000e-42 183.0
19 TraesCS7A01G401900 chr1A 94.872 117 6 0 321 437 554489128 554489244 1.600000e-42 183.0
20 TraesCS7A01G401900 chr5A 84.746 118 18 0 182 299 626985097 626984980 4.580000e-23 119.0
21 TraesCS7A01G401900 chr2D 86.420 81 10 1 200 280 567002220 567002141 1.290000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G401900 chr7A 581343730 581346350 2620 False 4841.000 4841 100.00000 1 2621 1 chr7A.!!$F1 2620
1 TraesCS7A01G401900 chr7B 538863499 538865716 2217 False 2924.000 2924 90.79100 437 2621 1 chr7B.!!$F1 2184
2 TraesCS7A01G401900 chr7D 510449522 510451693 2171 False 2752.000 2752 89.85100 464 2621 1 chr7D.!!$F2 2157
3 TraesCS7A01G401900 chr3D 156246450 156247684 1234 False 1225.000 1225 85.13000 1394 2618 1 chr3D.!!$F1 1224
4 TraesCS7A01G401900 chr3D 156239122 156241262 2140 False 262.500 401 86.12550 823 1335 2 chr3D.!!$F2 512
5 TraesCS7A01G401900 chr3B 225253522 225258315 4793 True 357.075 924 86.39125 823 2618 4 chr3B.!!$R1 1795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.035458 AACCGAAGAGAAGGCACCTG 59.965 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 3449 0.827507 ACCATGGGCGCAAGTTCTTT 60.828 50.0 18.09 0.0 41.68 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.244192 AGATTGCTAAGTTTAGTTTCGATTGC 58.756 34.615 0.00 0.00 33.32 3.56
28 29 6.554334 TTGCTAAGTTTAGTTTCGATTGCT 57.446 33.333 0.00 0.00 33.32 3.91
29 30 7.661127 TTGCTAAGTTTAGTTTCGATTGCTA 57.339 32.000 0.00 0.00 33.32 3.49
30 31 7.661127 TGCTAAGTTTAGTTTCGATTGCTAA 57.339 32.000 0.00 0.00 33.32 3.09
31 32 7.739295 TGCTAAGTTTAGTTTCGATTGCTAAG 58.261 34.615 0.00 0.00 33.32 2.18
32 33 7.386848 TGCTAAGTTTAGTTTCGATTGCTAAGT 59.613 33.333 0.00 0.00 33.32 2.24
33 34 8.228464 GCTAAGTTTAGTTTCGATTGCTAAGTT 58.772 33.333 0.00 0.00 33.32 2.66
37 38 9.269453 AGTTTAGTTTCGATTGCTAAGTTTAGT 57.731 29.630 0.00 0.00 33.32 2.24
38 39 9.874215 GTTTAGTTTCGATTGCTAAGTTTAGTT 57.126 29.630 0.00 0.00 33.32 2.24
41 42 7.288672 AGTTTCGATTGCTAAGTTTAGTTTCG 58.711 34.615 0.00 7.14 33.76 3.46
42 43 7.170320 AGTTTCGATTGCTAAGTTTAGTTTCGA 59.830 33.333 13.63 13.63 36.62 3.71
43 44 7.591006 TTCGATTGCTAAGTTTAGTTTCGAT 57.409 32.000 16.15 2.67 37.37 3.59
44 45 8.692110 TTCGATTGCTAAGTTTAGTTTCGATA 57.308 30.769 16.15 9.63 37.37 2.92
45 46 8.692110 TCGATTGCTAAGTTTAGTTTCGATAA 57.308 30.769 13.63 0.00 35.16 1.75
46 47 9.309516 TCGATTGCTAAGTTTAGTTTCGATAAT 57.690 29.630 13.63 0.00 35.16 1.28
50 51 9.880157 TTGCTAAGTTTAGTTTCGATAATAGGT 57.120 29.630 0.00 0.00 33.32 3.08
51 52 9.525409 TGCTAAGTTTAGTTTCGATAATAGGTC 57.475 33.333 0.00 0.00 33.32 3.85
52 53 8.689069 GCTAAGTTTAGTTTCGATAATAGGTCG 58.311 37.037 0.00 0.00 35.57 4.79
53 54 7.998753 AAGTTTAGTTTCGATAATAGGTCGG 57.001 36.000 0.00 0.00 39.45 4.79
54 55 7.338800 AGTTTAGTTTCGATAATAGGTCGGA 57.661 36.000 0.00 0.00 39.45 4.55
55 56 7.199078 AGTTTAGTTTCGATAATAGGTCGGAC 58.801 38.462 0.00 0.00 39.45 4.79
56 57 6.698008 TTAGTTTCGATAATAGGTCGGACA 57.302 37.500 10.76 0.00 39.45 4.02
57 58 5.587388 AGTTTCGATAATAGGTCGGACAA 57.413 39.130 10.76 0.00 39.45 3.18
58 59 5.346522 AGTTTCGATAATAGGTCGGACAAC 58.653 41.667 10.76 1.91 39.45 3.32
59 60 5.126707 AGTTTCGATAATAGGTCGGACAACT 59.873 40.000 10.76 4.17 39.45 3.16
60 61 5.587388 TTCGATAATAGGTCGGACAACTT 57.413 39.130 10.76 2.42 39.45 2.66
61 62 5.587388 TCGATAATAGGTCGGACAACTTT 57.413 39.130 10.76 0.88 39.45 2.66
62 63 5.585390 TCGATAATAGGTCGGACAACTTTC 58.415 41.667 10.76 0.00 39.45 2.62
63 64 5.125900 TCGATAATAGGTCGGACAACTTTCA 59.874 40.000 10.76 0.00 39.45 2.69
64 65 5.983720 CGATAATAGGTCGGACAACTTTCAT 59.016 40.000 10.76 0.00 35.55 2.57
65 66 6.479001 CGATAATAGGTCGGACAACTTTCATT 59.521 38.462 10.76 0.00 35.55 2.57
66 67 7.011109 CGATAATAGGTCGGACAACTTTCATTT 59.989 37.037 10.76 0.00 35.55 2.32
67 68 6.894339 AATAGGTCGGACAACTTTCATTTT 57.106 33.333 10.76 0.00 0.00 1.82
68 69 7.989416 AATAGGTCGGACAACTTTCATTTTA 57.011 32.000 10.76 0.00 0.00 1.52
69 70 7.989416 ATAGGTCGGACAACTTTCATTTTAA 57.011 32.000 10.76 0.00 0.00 1.52
70 71 6.894339 AGGTCGGACAACTTTCATTTTAAT 57.106 33.333 10.76 0.00 0.00 1.40
71 72 7.989416 AGGTCGGACAACTTTCATTTTAATA 57.011 32.000 10.76 0.00 0.00 0.98
72 73 8.040716 AGGTCGGACAACTTTCATTTTAATAG 57.959 34.615 10.76 0.00 0.00 1.73
73 74 7.664318 AGGTCGGACAACTTTCATTTTAATAGT 59.336 33.333 10.76 0.00 0.00 2.12
74 75 7.749126 GGTCGGACAACTTTCATTTTAATAGTG 59.251 37.037 10.76 0.00 0.00 2.74
75 76 8.287503 GTCGGACAACTTTCATTTTAATAGTGT 58.712 33.333 2.62 0.00 0.00 3.55
76 77 8.842280 TCGGACAACTTTCATTTTAATAGTGTT 58.158 29.630 0.00 0.00 0.00 3.32
77 78 9.113876 CGGACAACTTTCATTTTAATAGTGTTC 57.886 33.333 0.00 0.00 0.00 3.18
78 79 9.406828 GGACAACTTTCATTTTAATAGTGTTCC 57.593 33.333 0.00 0.00 0.00 3.62
79 80 9.113876 GACAACTTTCATTTTAATAGTGTTCCG 57.886 33.333 0.00 0.00 0.00 4.30
80 81 7.593644 ACAACTTTCATTTTAATAGTGTTCCGC 59.406 33.333 0.00 0.00 0.00 5.54
81 82 6.617879 ACTTTCATTTTAATAGTGTTCCGCC 58.382 36.000 0.00 0.00 0.00 6.13
82 83 5.570234 TTCATTTTAATAGTGTTCCGCCC 57.430 39.130 0.00 0.00 0.00 6.13
83 84 4.850680 TCATTTTAATAGTGTTCCGCCCT 58.149 39.130 0.00 0.00 0.00 5.19
84 85 4.638421 TCATTTTAATAGTGTTCCGCCCTG 59.362 41.667 0.00 0.00 0.00 4.45
85 86 2.032680 TTAATAGTGTTCCGCCCTGC 57.967 50.000 0.00 0.00 0.00 4.85
86 87 0.906066 TAATAGTGTTCCGCCCTGCA 59.094 50.000 0.00 0.00 0.00 4.41
87 88 0.255890 AATAGTGTTCCGCCCTGCAT 59.744 50.000 0.00 0.00 0.00 3.96
88 89 0.464373 ATAGTGTTCCGCCCTGCATG 60.464 55.000 0.00 0.00 0.00 4.06
89 90 2.535485 TAGTGTTCCGCCCTGCATGG 62.535 60.000 3.22 3.22 0.00 3.66
103 104 3.173247 CATGGCGTATGCTGCAATG 57.827 52.632 6.36 0.34 42.25 2.82
104 105 0.664224 CATGGCGTATGCTGCAATGA 59.336 50.000 6.36 0.00 44.87 2.57
105 106 0.949397 ATGGCGTATGCTGCAATGAG 59.051 50.000 6.36 0.00 42.25 2.90
106 107 1.009222 GGCGTATGCTGCAATGAGC 60.009 57.895 6.36 10.13 42.25 4.26
107 108 2.706523 GGCGTATGCTGCAATGAGCG 62.707 60.000 6.36 8.22 42.32 5.03
117 118 2.635141 GCAATGAGCGATTGTACGAG 57.365 50.000 11.65 0.00 43.17 4.18
118 119 1.332377 GCAATGAGCGATTGTACGAGC 60.332 52.381 11.65 0.00 43.17 5.03
119 120 1.926510 CAATGAGCGATTGTACGAGCA 59.073 47.619 0.00 0.00 37.29 4.26
120 121 2.515926 ATGAGCGATTGTACGAGCAT 57.484 45.000 0.00 0.00 35.09 3.79
121 122 2.293677 TGAGCGATTGTACGAGCATT 57.706 45.000 0.00 0.00 35.09 3.56
122 123 2.616960 TGAGCGATTGTACGAGCATTT 58.383 42.857 0.00 0.00 35.09 2.32
123 124 3.000041 TGAGCGATTGTACGAGCATTTT 59.000 40.909 0.00 0.00 35.09 1.82
124 125 4.177783 TGAGCGATTGTACGAGCATTTTA 58.822 39.130 0.00 0.00 35.09 1.52
125 126 4.627900 TGAGCGATTGTACGAGCATTTTAA 59.372 37.500 0.00 0.00 35.09 1.52
126 127 5.143916 AGCGATTGTACGAGCATTTTAAG 57.856 39.130 0.00 0.00 35.09 1.85
127 128 4.630069 AGCGATTGTACGAGCATTTTAAGT 59.370 37.500 0.00 0.00 35.09 2.24
128 129 5.121768 AGCGATTGTACGAGCATTTTAAGTT 59.878 36.000 0.00 0.00 35.09 2.66
129 130 5.225129 GCGATTGTACGAGCATTTTAAGTTG 59.775 40.000 0.00 0.00 35.09 3.16
130 131 5.732647 CGATTGTACGAGCATTTTAAGTTGG 59.267 40.000 0.00 0.00 35.09 3.77
131 132 6.569179 ATTGTACGAGCATTTTAAGTTGGT 57.431 33.333 0.00 0.00 0.00 3.67
132 133 6.380095 TTGTACGAGCATTTTAAGTTGGTT 57.620 33.333 0.00 0.00 0.00 3.67
133 134 7.493743 TTGTACGAGCATTTTAAGTTGGTTA 57.506 32.000 0.00 0.00 0.00 2.85
134 135 7.493743 TGTACGAGCATTTTAAGTTGGTTAA 57.506 32.000 0.00 0.00 0.00 2.01
135 136 8.101654 TGTACGAGCATTTTAAGTTGGTTAAT 57.898 30.769 0.00 0.00 30.46 1.40
136 137 9.217278 TGTACGAGCATTTTAAGTTGGTTAATA 57.783 29.630 0.00 0.00 30.46 0.98
143 144 9.705290 GCATTTTAAGTTGGTTAATATATGGGG 57.295 33.333 0.00 0.00 30.46 4.96
168 169 6.557593 TTTTTAAGAAAAAGAAACGCCGTC 57.442 33.333 0.00 0.00 36.02 4.79
169 170 4.879104 TTAAGAAAAAGAAACGCCGTCA 57.121 36.364 0.00 0.00 0.00 4.35
170 171 2.750301 AGAAAAAGAAACGCCGTCAC 57.250 45.000 0.00 0.00 0.00 3.67
171 172 1.332686 AGAAAAAGAAACGCCGTCACC 59.667 47.619 0.00 0.00 0.00 4.02
172 173 0.382873 AAAAAGAAACGCCGTCACCC 59.617 50.000 0.00 0.00 0.00 4.61
173 174 1.778027 AAAAGAAACGCCGTCACCCG 61.778 55.000 0.00 0.00 0.00 5.28
194 195 4.332637 GTGTGCCGCACCTGCAAG 62.333 66.667 20.67 0.00 42.10 4.01
230 231 9.896645 TCTCTAATCTAAAGTACTAACCGAAGA 57.103 33.333 0.00 0.00 0.00 2.87
232 233 9.896645 TCTAATCTAAAGTACTAACCGAAGAGA 57.103 33.333 0.00 0.00 0.00 3.10
235 236 7.388460 TCTAAAGTACTAACCGAAGAGAAGG 57.612 40.000 0.00 0.00 0.00 3.46
236 237 4.453177 AAGTACTAACCGAAGAGAAGGC 57.547 45.455 0.00 0.00 0.00 4.35
237 238 3.428532 AGTACTAACCGAAGAGAAGGCA 58.571 45.455 0.00 0.00 0.00 4.75
238 239 2.745515 ACTAACCGAAGAGAAGGCAC 57.254 50.000 0.00 0.00 0.00 5.01
239 240 1.275573 ACTAACCGAAGAGAAGGCACC 59.724 52.381 0.00 0.00 0.00 5.01
240 241 1.550976 CTAACCGAAGAGAAGGCACCT 59.449 52.381 0.00 0.00 0.00 4.00
241 242 0.035458 AACCGAAGAGAAGGCACCTG 59.965 55.000 0.00 0.00 0.00 4.00
242 243 1.078848 CCGAAGAGAAGGCACCTGG 60.079 63.158 0.00 0.00 0.00 4.45
243 244 1.544825 CCGAAGAGAAGGCACCTGGA 61.545 60.000 0.00 0.00 0.00 3.86
244 245 0.539051 CGAAGAGAAGGCACCTGGAT 59.461 55.000 0.00 0.00 0.00 3.41
245 246 1.065854 CGAAGAGAAGGCACCTGGATT 60.066 52.381 0.00 0.00 0.00 3.01
246 247 2.637947 GAAGAGAAGGCACCTGGATTC 58.362 52.381 0.00 0.00 0.00 2.52
247 248 1.963985 AGAGAAGGCACCTGGATTCT 58.036 50.000 0.00 4.38 34.78 2.40
248 249 1.836802 AGAGAAGGCACCTGGATTCTC 59.163 52.381 18.84 18.84 45.15 2.87
249 250 1.836802 GAGAAGGCACCTGGATTCTCT 59.163 52.381 19.03 8.32 42.74 3.10
250 251 2.238395 GAGAAGGCACCTGGATTCTCTT 59.762 50.000 19.03 9.06 42.74 2.85
251 252 2.238395 AGAAGGCACCTGGATTCTCTTC 59.762 50.000 0.00 6.35 0.00 2.87
252 253 0.915364 AGGCACCTGGATTCTCTTCC 59.085 55.000 0.00 0.00 36.24 3.46
253 254 0.106967 GGCACCTGGATTCTCTTCCC 60.107 60.000 0.00 0.00 34.67 3.97
254 255 0.106967 GCACCTGGATTCTCTTCCCC 60.107 60.000 0.00 0.00 34.67 4.81
255 256 0.179000 CACCTGGATTCTCTTCCCCG 59.821 60.000 0.00 0.00 34.67 5.73
256 257 1.147153 CCTGGATTCTCTTCCCCGC 59.853 63.158 0.00 0.00 34.67 6.13
257 258 1.147153 CTGGATTCTCTTCCCCGCC 59.853 63.158 0.00 0.00 34.67 6.13
258 259 1.615124 TGGATTCTCTTCCCCGCCA 60.615 57.895 0.00 0.00 34.67 5.69
259 260 1.153147 GGATTCTCTTCCCCGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
260 261 1.153147 GATTCTCTTCCCCGCCACC 60.153 63.158 0.00 0.00 0.00 4.61
261 262 2.925162 GATTCTCTTCCCCGCCACCG 62.925 65.000 0.00 0.00 0.00 4.94
289 290 3.737172 CGGCAGGCGAAGGGTTTG 61.737 66.667 11.78 0.00 0.00 2.93
290 291 2.597510 GGCAGGCGAAGGGTTTGT 60.598 61.111 0.00 0.00 0.00 2.83
291 292 2.644992 GCAGGCGAAGGGTTTGTG 59.355 61.111 0.00 0.00 0.00 3.33
292 293 1.896660 GCAGGCGAAGGGTTTGTGA 60.897 57.895 0.00 0.00 0.00 3.58
293 294 1.452145 GCAGGCGAAGGGTTTGTGAA 61.452 55.000 0.00 0.00 0.00 3.18
294 295 1.247567 CAGGCGAAGGGTTTGTGAAT 58.752 50.000 0.00 0.00 0.00 2.57
295 296 1.200020 CAGGCGAAGGGTTTGTGAATC 59.800 52.381 0.00 0.00 0.00 2.52
296 297 0.526211 GGCGAAGGGTTTGTGAATCC 59.474 55.000 0.00 0.00 36.19 3.01
297 298 1.243902 GCGAAGGGTTTGTGAATCCA 58.756 50.000 0.00 0.00 38.60 3.41
298 299 1.068541 GCGAAGGGTTTGTGAATCCAC 60.069 52.381 0.00 0.00 38.60 4.02
309 310 1.667724 GTGAATCCACAAGCTCATCGG 59.332 52.381 0.00 0.00 42.72 4.18
310 311 1.278985 TGAATCCACAAGCTCATCGGT 59.721 47.619 0.00 0.00 0.00 4.69
311 312 1.667724 GAATCCACAAGCTCATCGGTG 59.332 52.381 0.00 0.00 0.00 4.94
312 313 0.904649 ATCCACAAGCTCATCGGTGA 59.095 50.000 0.00 0.00 33.16 4.02
313 314 0.684535 TCCACAAGCTCATCGGTGAA 59.315 50.000 0.00 0.00 33.05 3.18
314 315 1.071542 TCCACAAGCTCATCGGTGAAA 59.928 47.619 0.00 0.00 33.05 2.69
315 316 1.197721 CCACAAGCTCATCGGTGAAAC 59.802 52.381 0.00 0.00 33.05 2.78
326 327 3.884900 GTGAAACCTGCGGCGTAT 58.115 55.556 9.37 0.00 0.00 3.06
327 328 3.053662 GTGAAACCTGCGGCGTATA 57.946 52.632 9.37 0.00 0.00 1.47
328 329 1.361793 GTGAAACCTGCGGCGTATAA 58.638 50.000 9.37 0.00 0.00 0.98
329 330 1.937899 GTGAAACCTGCGGCGTATAAT 59.062 47.619 9.37 0.00 0.00 1.28
330 331 2.353579 GTGAAACCTGCGGCGTATAATT 59.646 45.455 9.37 0.00 0.00 1.40
331 332 3.556775 GTGAAACCTGCGGCGTATAATTA 59.443 43.478 9.37 0.00 0.00 1.40
332 333 4.034279 GTGAAACCTGCGGCGTATAATTAA 59.966 41.667 9.37 0.00 0.00 1.40
333 334 4.034279 TGAAACCTGCGGCGTATAATTAAC 59.966 41.667 9.37 0.00 0.00 2.01
334 335 3.182341 ACCTGCGGCGTATAATTAACA 57.818 42.857 9.37 0.00 0.00 2.41
335 336 3.735591 ACCTGCGGCGTATAATTAACAT 58.264 40.909 9.37 0.00 0.00 2.71
336 337 3.496884 ACCTGCGGCGTATAATTAACATG 59.503 43.478 9.37 0.00 0.00 3.21
337 338 3.496884 CCTGCGGCGTATAATTAACATGT 59.503 43.478 9.37 0.00 0.00 3.21
338 339 4.024387 CCTGCGGCGTATAATTAACATGTT 60.024 41.667 16.68 16.68 0.00 2.71
339 340 5.085636 TGCGGCGTATAATTAACATGTTC 57.914 39.130 15.85 0.00 0.00 3.18
340 341 4.024725 TGCGGCGTATAATTAACATGTTCC 60.025 41.667 15.85 5.74 0.00 3.62
341 342 4.612033 GCGGCGTATAATTAACATGTTCCC 60.612 45.833 15.85 2.16 0.00 3.97
342 343 4.083696 CGGCGTATAATTAACATGTTCCCC 60.084 45.833 15.85 0.00 0.00 4.81
343 344 4.216902 GGCGTATAATTAACATGTTCCCCC 59.783 45.833 15.85 0.64 0.00 5.40
344 345 5.067954 GCGTATAATTAACATGTTCCCCCT 58.932 41.667 15.85 1.37 0.00 4.79
345 346 5.180680 GCGTATAATTAACATGTTCCCCCTC 59.819 44.000 15.85 1.37 0.00 4.30
346 347 5.407387 CGTATAATTAACATGTTCCCCCTCG 59.593 44.000 15.85 9.47 0.00 4.63
347 348 3.732048 AATTAACATGTTCCCCCTCGT 57.268 42.857 15.85 0.00 0.00 4.18
348 349 2.773993 TTAACATGTTCCCCCTCGTC 57.226 50.000 15.85 0.00 0.00 4.20
349 350 0.906775 TAACATGTTCCCCCTCGTCC 59.093 55.000 15.85 0.00 0.00 4.79
350 351 1.131303 AACATGTTCCCCCTCGTCCA 61.131 55.000 4.92 0.00 0.00 4.02
351 352 1.221840 CATGTTCCCCCTCGTCCAG 59.778 63.158 0.00 0.00 0.00 3.86
352 353 1.080354 ATGTTCCCCCTCGTCCAGA 59.920 57.895 0.00 0.00 0.00 3.86
353 354 1.265454 ATGTTCCCCCTCGTCCAGAC 61.265 60.000 0.00 0.00 0.00 3.51
354 355 2.284405 TTCCCCCTCGTCCAGACC 60.284 66.667 0.00 0.00 0.00 3.85
355 356 3.918328 TTCCCCCTCGTCCAGACCC 62.918 68.421 0.00 0.00 0.00 4.46
356 357 4.715130 CCCCCTCGTCCAGACCCA 62.715 72.222 0.00 0.00 0.00 4.51
357 358 2.365635 CCCCTCGTCCAGACCCAT 60.366 66.667 0.00 0.00 0.00 4.00
358 359 2.435693 CCCCTCGTCCAGACCCATC 61.436 68.421 0.00 0.00 0.00 3.51
359 360 2.786495 CCCTCGTCCAGACCCATCG 61.786 68.421 0.00 0.00 0.00 3.84
360 361 2.105128 CTCGTCCAGACCCATCGC 59.895 66.667 0.00 0.00 0.00 4.58
361 362 2.678580 TCGTCCAGACCCATCGCA 60.679 61.111 0.00 0.00 0.00 5.10
362 363 2.225791 CTCGTCCAGACCCATCGCAA 62.226 60.000 0.00 0.00 0.00 4.85
363 364 1.811266 CGTCCAGACCCATCGCAAG 60.811 63.158 0.00 0.00 0.00 4.01
364 365 1.450312 GTCCAGACCCATCGCAAGG 60.450 63.158 0.00 0.00 38.47 3.61
365 366 1.612146 TCCAGACCCATCGCAAGGA 60.612 57.895 0.00 0.00 38.47 3.36
366 367 1.198094 TCCAGACCCATCGCAAGGAA 61.198 55.000 0.00 0.00 38.47 3.36
367 368 0.322456 CCAGACCCATCGCAAGGAAA 60.322 55.000 0.00 0.00 38.47 3.13
368 369 1.089920 CAGACCCATCGCAAGGAAAG 58.910 55.000 0.00 0.00 38.47 2.62
369 370 0.678048 AGACCCATCGCAAGGAAAGC 60.678 55.000 0.00 0.00 38.47 3.51
379 380 3.203161 GCAAGGAAAGCGAAAACCTAG 57.797 47.619 0.00 0.00 32.06 3.02
380 381 2.812011 GCAAGGAAAGCGAAAACCTAGA 59.188 45.455 0.00 0.00 32.06 2.43
381 382 3.440522 GCAAGGAAAGCGAAAACCTAGAT 59.559 43.478 0.00 0.00 32.06 1.98
382 383 4.082733 GCAAGGAAAGCGAAAACCTAGATT 60.083 41.667 0.00 0.00 32.06 2.40
383 384 5.564848 GCAAGGAAAGCGAAAACCTAGATTT 60.565 40.000 0.00 0.00 32.06 2.17
384 385 5.629079 AGGAAAGCGAAAACCTAGATTTG 57.371 39.130 0.00 0.00 0.00 2.32
385 386 4.082733 AGGAAAGCGAAAACCTAGATTTGC 60.083 41.667 0.00 0.00 33.04 3.68
386 387 4.082733 GGAAAGCGAAAACCTAGATTTGCT 60.083 41.667 10.22 10.22 30.86 3.91
387 388 5.453567 AAAGCGAAAACCTAGATTTGCTT 57.546 34.783 17.60 17.60 36.56 3.91
388 389 5.453567 AAGCGAAAACCTAGATTTGCTTT 57.546 34.783 17.60 8.18 34.00 3.51
389 390 6.569179 AAGCGAAAACCTAGATTTGCTTTA 57.431 33.333 17.60 0.00 34.00 1.85
390 391 6.759497 AGCGAAAACCTAGATTTGCTTTAT 57.241 33.333 10.22 0.00 0.00 1.40
391 392 6.786207 AGCGAAAACCTAGATTTGCTTTATC 58.214 36.000 10.22 0.00 0.00 1.75
392 393 5.677178 GCGAAAACCTAGATTTGCTTTATCG 59.323 40.000 0.00 0.00 0.00 2.92
393 394 6.192360 CGAAAACCTAGATTTGCTTTATCGG 58.808 40.000 0.00 0.00 0.00 4.18
394 395 6.451064 AAAACCTAGATTTGCTTTATCGGG 57.549 37.500 0.00 0.00 0.00 5.14
395 396 4.772886 ACCTAGATTTGCTTTATCGGGT 57.227 40.909 0.00 0.00 32.41 5.28
396 397 5.881923 ACCTAGATTTGCTTTATCGGGTA 57.118 39.130 0.00 0.00 34.09 3.69
397 398 6.435292 ACCTAGATTTGCTTTATCGGGTAT 57.565 37.500 0.00 0.00 34.09 2.73
398 399 6.465084 ACCTAGATTTGCTTTATCGGGTATC 58.535 40.000 0.00 0.00 34.09 2.24
399 400 6.042781 ACCTAGATTTGCTTTATCGGGTATCA 59.957 38.462 0.00 0.00 34.09 2.15
400 401 6.934645 CCTAGATTTGCTTTATCGGGTATCAA 59.065 38.462 0.00 0.00 0.00 2.57
401 402 7.444183 CCTAGATTTGCTTTATCGGGTATCAAA 59.556 37.037 0.00 0.00 0.00 2.69
402 403 7.027778 AGATTTGCTTTATCGGGTATCAAAC 57.972 36.000 0.00 0.00 0.00 2.93
403 404 4.868450 TTGCTTTATCGGGTATCAAACG 57.132 40.909 0.00 0.00 0.00 3.60
404 405 3.199677 TGCTTTATCGGGTATCAAACGG 58.800 45.455 0.00 0.00 0.00 4.44
405 406 2.546789 GCTTTATCGGGTATCAAACGGG 59.453 50.000 0.00 0.00 0.00 5.28
406 407 3.742013 GCTTTATCGGGTATCAAACGGGA 60.742 47.826 0.00 0.00 0.00 5.14
407 408 4.444536 CTTTATCGGGTATCAAACGGGAA 58.555 43.478 0.00 0.00 0.00 3.97
408 409 2.320745 ATCGGGTATCAAACGGGAAC 57.679 50.000 0.00 0.00 0.00 3.62
409 410 1.269012 TCGGGTATCAAACGGGAACT 58.731 50.000 0.00 0.00 0.00 3.01
410 411 1.205417 TCGGGTATCAAACGGGAACTC 59.795 52.381 0.00 0.00 0.00 3.01
411 412 1.741394 CGGGTATCAAACGGGAACTCC 60.741 57.143 0.00 0.00 0.00 3.85
424 425 4.092771 GGGAACTCCGAGCAAATAAAAC 57.907 45.455 0.00 0.00 36.71 2.43
425 426 3.504520 GGGAACTCCGAGCAAATAAAACA 59.495 43.478 0.00 0.00 36.71 2.83
426 427 4.473199 GGAACTCCGAGCAAATAAAACAC 58.527 43.478 0.00 0.00 0.00 3.32
427 428 4.023536 GGAACTCCGAGCAAATAAAACACA 60.024 41.667 0.00 0.00 0.00 3.72
428 429 5.335661 GGAACTCCGAGCAAATAAAACACAT 60.336 40.000 0.00 0.00 0.00 3.21
429 430 5.705609 ACTCCGAGCAAATAAAACACATT 57.294 34.783 0.00 0.00 0.00 2.71
430 431 6.084326 ACTCCGAGCAAATAAAACACATTT 57.916 33.333 0.00 0.00 34.92 2.32
431 432 6.149633 ACTCCGAGCAAATAAAACACATTTC 58.850 36.000 0.00 0.00 32.27 2.17
432 433 6.078202 TCCGAGCAAATAAAACACATTTCA 57.922 33.333 0.00 0.00 32.27 2.69
433 434 6.507900 TCCGAGCAAATAAAACACATTTCAA 58.492 32.000 0.00 0.00 32.27 2.69
434 435 6.980978 TCCGAGCAAATAAAACACATTTCAAA 59.019 30.769 0.00 0.00 32.27 2.69
435 436 7.492669 TCCGAGCAAATAAAACACATTTCAAAA 59.507 29.630 0.00 0.00 32.27 2.44
444 445 7.832503 AAAACACATTTCAAAAGAAGTCTGG 57.167 32.000 0.00 0.00 0.00 3.86
448 449 5.532406 CACATTTCAAAAGAAGTCTGGAGGA 59.468 40.000 0.00 0.00 0.00 3.71
449 450 6.039717 CACATTTCAAAAGAAGTCTGGAGGAA 59.960 38.462 0.00 0.00 0.00 3.36
453 454 5.615289 TCAAAAGAAGTCTGGAGGAAAGAG 58.385 41.667 0.00 0.00 0.00 2.85
454 455 5.366768 TCAAAAGAAGTCTGGAGGAAAGAGA 59.633 40.000 0.00 0.00 0.00 3.10
472 473 2.297597 GAGATTGTCATAGCCGCCTAGT 59.702 50.000 0.00 0.00 0.00 2.57
497 498 9.929180 GTATTAGAAACATAGTGGATCATAGCA 57.071 33.333 0.00 0.00 0.00 3.49
514 515 3.733443 AGCAGCCTAGGTTTTTGTTTG 57.267 42.857 11.31 0.00 0.00 2.93
520 521 5.531287 CAGCCTAGGTTTTTGTTTGTACTCT 59.469 40.000 11.31 0.00 0.00 3.24
521 522 6.708949 CAGCCTAGGTTTTTGTTTGTACTCTA 59.291 38.462 11.31 0.00 0.00 2.43
601 608 4.615912 GCAAGACAATACAATCACCCACAC 60.616 45.833 0.00 0.00 0.00 3.82
602 609 4.365514 AGACAATACAATCACCCACACA 57.634 40.909 0.00 0.00 0.00 3.72
614 621 1.032014 CCCACACAACAACCCAAGAG 58.968 55.000 0.00 0.00 0.00 2.85
649 656 0.751643 TCGATGGGCAGACGATGAGA 60.752 55.000 0.00 0.00 0.00 3.27
673 680 4.835927 CCAGTACAAGGCTAGGCG 57.164 61.111 11.10 0.00 0.00 5.52
674 681 1.144057 CCAGTACAAGGCTAGGCGG 59.856 63.158 11.10 9.91 0.00 6.13
675 682 1.521681 CAGTACAAGGCTAGGCGGC 60.522 63.158 11.10 0.00 38.75 6.53
714 721 4.241555 CATTCTCCCCTCCCGCCG 62.242 72.222 0.00 0.00 0.00 6.46
764 771 2.095059 CAGCCTTTGGAGATTGGTTTCG 60.095 50.000 0.00 0.00 0.00 3.46
765 779 1.886542 GCCTTTGGAGATTGGTTTCGT 59.113 47.619 0.00 0.00 0.00 3.85
779 793 0.601558 TTTCGTCTTCCTCCTCACCG 59.398 55.000 0.00 0.00 0.00 4.94
827 841 3.829311 AAGCCACCCCCTTCCTCCA 62.829 63.158 0.00 0.00 0.00 3.86
895 926 2.057316 CGATCATTCCTAGCAAGCTCG 58.943 52.381 0.00 0.00 0.00 5.03
913 948 0.243907 CGCCCTCTCTCGAGAAAACA 59.756 55.000 17.36 0.00 39.74 2.83
918 953 3.367910 CCCTCTCTCGAGAAAACAGAAGG 60.368 52.174 17.36 9.02 39.74 3.46
924 959 2.028930 TCGAGAAAACAGAAGGCTCTCC 60.029 50.000 0.00 0.00 30.81 3.71
929 964 2.621556 AACAGAAGGCTCTCCTCTCT 57.378 50.000 0.00 0.00 43.40 3.10
936 2592 1.212935 AGGCTCTCCTCTCTCTCTCAC 59.787 57.143 0.00 0.00 38.72 3.51
938 2594 1.953559 CTCTCCTCTCTCTCTCACGG 58.046 60.000 0.00 0.00 0.00 4.94
967 2623 2.197605 GCTCTCCGGCTCTACTCCC 61.198 68.421 0.00 0.00 0.00 4.30
991 2649 2.363795 TCTACACCCCGGCCTCTG 60.364 66.667 0.00 0.00 0.00 3.35
1338 3019 1.002868 GCAGAAGAAGAGGCTGGCA 60.003 57.895 3.38 0.00 0.00 4.92
1341 3022 1.130054 AGAAGAAGAGGCTGGCACCA 61.130 55.000 3.38 0.00 0.00 4.17
1437 3118 0.842467 AGGTGGAGGAAGGAGGGTTG 60.842 60.000 0.00 0.00 0.00 3.77
1545 3232 1.773391 CCAGGGGATGATGGCTCCT 60.773 63.158 0.00 0.00 33.05 3.69
1549 3236 1.453669 GGGATGATGGCTCCTGACC 59.546 63.158 0.00 0.00 33.05 4.02
1652 3345 5.240891 CCAGAGCTGTTCTTGTGATCTTTA 58.759 41.667 0.00 0.00 32.41 1.85
1668 3361 9.119418 TGTGATCTTTATCTTGTTTTTGTGAGA 57.881 29.630 0.00 0.00 32.93 3.27
1715 3408 8.930846 AGAAATGGATTCTTTTCTCTCTTTCA 57.069 30.769 8.71 0.00 46.39 2.69
1744 3449 8.321353 AGATGAACATATTTACAGTGGTCTTGA 58.679 33.333 0.00 0.00 31.01 3.02
1755 3460 2.614057 AGTGGTCTTGAAAGAACTTGCG 59.386 45.455 9.40 0.00 43.21 4.85
1778 3647 4.275936 GCCCATGGTTGCAAATACTAGTAG 59.724 45.833 11.73 0.00 0.00 2.57
1920 3795 4.100653 TGAAAATGCCATGTGGAGAACAAA 59.899 37.500 2.55 0.00 43.61 2.83
2013 5645 5.587443 TGCACTTGATCATCATTCCAAGTAG 59.413 40.000 0.00 0.00 44.97 2.57
2039 5680 9.710900 GTTTTTGGAAGGAAAATCATACTCAAT 57.289 29.630 0.00 0.00 0.00 2.57
2125 5767 1.093159 CCAGACAAAGGATGCTCTGC 58.907 55.000 0.00 0.00 36.59 4.26
2154 5798 7.711339 AGTGGTGTCTGTTTTTCTCTTTACTAG 59.289 37.037 0.00 0.00 0.00 2.57
2175 5819 5.217978 AGTTGCAAAATGATGTGGACAAT 57.782 34.783 0.00 0.00 0.00 2.71
2210 5854 4.311606 TGTGACTATGAAAAGCTGCGTAA 58.688 39.130 0.00 0.00 0.00 3.18
2230 5874 8.158132 TGCGTAATACCTTGATGGGAATAATTA 58.842 33.333 0.00 0.00 41.11 1.40
2600 7360 3.091545 TCAATCAATGGCCAAAGACTCC 58.908 45.455 10.96 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.750903 GCAATCGAAACTAAACTTAGCAATCTT 59.249 33.333 0.00 0.00 34.09 2.40
2 3 7.119846 AGCAATCGAAACTAAACTTAGCAATCT 59.880 33.333 0.00 0.00 34.09 2.40
3 4 7.244192 AGCAATCGAAACTAAACTTAGCAATC 58.756 34.615 0.00 0.00 34.09 2.67
4 5 7.145932 AGCAATCGAAACTAAACTTAGCAAT 57.854 32.000 0.00 0.00 34.09 3.56
5 6 6.554334 AGCAATCGAAACTAAACTTAGCAA 57.446 33.333 0.00 0.00 34.09 3.91
6 7 7.386848 ACTTAGCAATCGAAACTAAACTTAGCA 59.613 33.333 0.00 0.00 34.09 3.49
7 8 7.740246 ACTTAGCAATCGAAACTAAACTTAGC 58.260 34.615 0.00 0.00 34.09 3.09
11 12 9.269453 ACTAAACTTAGCAATCGAAACTAAACT 57.731 29.630 0.00 0.00 34.09 2.66
12 13 9.874215 AACTAAACTTAGCAATCGAAACTAAAC 57.126 29.630 0.00 0.00 34.09 2.01
15 16 8.430063 CGAAACTAAACTTAGCAATCGAAACTA 58.570 33.333 10.97 0.00 36.43 2.24
16 17 7.170320 TCGAAACTAAACTTAGCAATCGAAACT 59.830 33.333 14.35 0.00 38.39 2.66
17 18 7.285788 TCGAAACTAAACTTAGCAATCGAAAC 58.714 34.615 14.35 0.00 38.39 2.78
18 19 7.410800 TCGAAACTAAACTTAGCAATCGAAA 57.589 32.000 14.35 0.00 38.39 3.46
19 20 7.591006 ATCGAAACTAAACTTAGCAATCGAA 57.409 32.000 17.89 8.45 41.36 3.71
20 21 8.692110 TTATCGAAACTAAACTTAGCAATCGA 57.308 30.769 16.99 16.99 41.78 3.59
24 25 9.880157 ACCTATTATCGAAACTAAACTTAGCAA 57.120 29.630 0.00 0.00 34.09 3.91
25 26 9.525409 GACCTATTATCGAAACTAAACTTAGCA 57.475 33.333 0.00 0.00 34.09 3.49
26 27 8.689069 CGACCTATTATCGAAACTAAACTTAGC 58.311 37.037 0.00 0.00 42.25 3.09
27 28 9.178427 CCGACCTATTATCGAAACTAAACTTAG 57.822 37.037 0.00 0.00 42.25 2.18
28 29 8.902806 TCCGACCTATTATCGAAACTAAACTTA 58.097 33.333 0.00 0.00 42.25 2.24
29 30 7.704047 GTCCGACCTATTATCGAAACTAAACTT 59.296 37.037 0.00 0.00 42.25 2.66
30 31 7.148018 TGTCCGACCTATTATCGAAACTAAACT 60.148 37.037 0.00 0.00 42.25 2.66
31 32 6.974622 TGTCCGACCTATTATCGAAACTAAAC 59.025 38.462 0.00 0.00 42.25 2.01
32 33 7.099266 TGTCCGACCTATTATCGAAACTAAA 57.901 36.000 0.00 0.00 42.25 1.85
33 34 6.698008 TGTCCGACCTATTATCGAAACTAA 57.302 37.500 0.00 0.00 42.25 2.24
34 35 6.319658 AGTTGTCCGACCTATTATCGAAACTA 59.680 38.462 0.00 0.00 42.25 2.24
35 36 5.126707 AGTTGTCCGACCTATTATCGAAACT 59.873 40.000 0.00 1.14 42.25 2.66
36 37 5.346522 AGTTGTCCGACCTATTATCGAAAC 58.653 41.667 0.00 0.00 42.25 2.78
37 38 5.587388 AGTTGTCCGACCTATTATCGAAA 57.413 39.130 0.00 0.00 42.25 3.46
38 39 5.587388 AAGTTGTCCGACCTATTATCGAA 57.413 39.130 0.00 0.00 42.25 3.71
39 40 5.125900 TGAAAGTTGTCCGACCTATTATCGA 59.874 40.000 0.00 0.00 42.25 3.59
40 41 5.345702 TGAAAGTTGTCCGACCTATTATCG 58.654 41.667 0.00 0.00 39.33 2.92
41 42 7.787725 AATGAAAGTTGTCCGACCTATTATC 57.212 36.000 0.00 0.00 0.00 1.75
42 43 8.575649 AAAATGAAAGTTGTCCGACCTATTAT 57.424 30.769 0.00 0.00 0.00 1.28
43 44 7.989416 AAAATGAAAGTTGTCCGACCTATTA 57.011 32.000 0.00 0.00 0.00 0.98
44 45 6.894339 AAAATGAAAGTTGTCCGACCTATT 57.106 33.333 0.00 0.00 0.00 1.73
45 46 7.989416 TTAAAATGAAAGTTGTCCGACCTAT 57.011 32.000 0.00 0.00 0.00 2.57
46 47 7.989416 ATTAAAATGAAAGTTGTCCGACCTA 57.011 32.000 0.00 0.00 0.00 3.08
47 48 6.894339 ATTAAAATGAAAGTTGTCCGACCT 57.106 33.333 0.00 0.00 0.00 3.85
48 49 7.749126 CACTATTAAAATGAAAGTTGTCCGACC 59.251 37.037 0.00 0.00 0.00 4.79
49 50 8.287503 ACACTATTAAAATGAAAGTTGTCCGAC 58.712 33.333 0.00 0.00 0.00 4.79
50 51 8.385898 ACACTATTAAAATGAAAGTTGTCCGA 57.614 30.769 0.00 0.00 0.00 4.55
51 52 9.113876 GAACACTATTAAAATGAAAGTTGTCCG 57.886 33.333 0.00 0.00 0.00 4.79
52 53 9.406828 GGAACACTATTAAAATGAAAGTTGTCC 57.593 33.333 0.00 0.00 0.00 4.02
53 54 9.113876 CGGAACACTATTAAAATGAAAGTTGTC 57.886 33.333 0.00 0.00 0.00 3.18
54 55 7.593644 GCGGAACACTATTAAAATGAAAGTTGT 59.406 33.333 0.00 0.00 0.00 3.32
55 56 7.061789 GGCGGAACACTATTAAAATGAAAGTTG 59.938 37.037 0.00 0.00 0.00 3.16
56 57 7.088272 GGCGGAACACTATTAAAATGAAAGTT 58.912 34.615 0.00 0.00 0.00 2.66
57 58 6.349860 GGGCGGAACACTATTAAAATGAAAGT 60.350 38.462 0.00 0.00 0.00 2.66
58 59 6.033966 GGGCGGAACACTATTAAAATGAAAG 58.966 40.000 0.00 0.00 0.00 2.62
59 60 5.712917 AGGGCGGAACACTATTAAAATGAAA 59.287 36.000 0.00 0.00 0.00 2.69
60 61 5.124776 CAGGGCGGAACACTATTAAAATGAA 59.875 40.000 0.00 0.00 0.00 2.57
61 62 4.638421 CAGGGCGGAACACTATTAAAATGA 59.362 41.667 0.00 0.00 0.00 2.57
62 63 4.733523 GCAGGGCGGAACACTATTAAAATG 60.734 45.833 0.00 0.00 0.00 2.32
63 64 3.380320 GCAGGGCGGAACACTATTAAAAT 59.620 43.478 0.00 0.00 0.00 1.82
64 65 2.750712 GCAGGGCGGAACACTATTAAAA 59.249 45.455 0.00 0.00 0.00 1.52
65 66 2.290387 TGCAGGGCGGAACACTATTAAA 60.290 45.455 0.00 0.00 0.00 1.52
66 67 1.279558 TGCAGGGCGGAACACTATTAA 59.720 47.619 0.00 0.00 0.00 1.40
67 68 0.906066 TGCAGGGCGGAACACTATTA 59.094 50.000 0.00 0.00 0.00 0.98
68 69 0.255890 ATGCAGGGCGGAACACTATT 59.744 50.000 0.00 0.00 0.00 1.73
69 70 0.464373 CATGCAGGGCGGAACACTAT 60.464 55.000 0.00 0.00 0.00 2.12
70 71 1.078497 CATGCAGGGCGGAACACTA 60.078 57.895 0.00 0.00 0.00 2.74
71 72 2.360350 CATGCAGGGCGGAACACT 60.360 61.111 0.00 0.00 0.00 3.55
72 73 3.443045 CCATGCAGGGCGGAACAC 61.443 66.667 3.55 0.00 0.00 3.32
85 86 0.664224 TCATTGCAGCATACGCCATG 59.336 50.000 0.00 0.00 39.83 3.66
86 87 0.949397 CTCATTGCAGCATACGCCAT 59.051 50.000 0.00 0.00 39.83 4.40
87 88 1.717791 GCTCATTGCAGCATACGCCA 61.718 55.000 0.00 0.00 42.31 5.69
88 89 1.009222 GCTCATTGCAGCATACGCC 60.009 57.895 0.00 0.00 42.31 5.68
89 90 1.368493 CGCTCATTGCAGCATACGC 60.368 57.895 0.00 0.00 43.06 4.42
90 91 0.863799 ATCGCTCATTGCAGCATACG 59.136 50.000 0.00 0.00 43.06 3.06
91 92 2.032550 ACAATCGCTCATTGCAGCATAC 59.967 45.455 0.00 0.00 45.37 2.39
92 93 2.291365 ACAATCGCTCATTGCAGCATA 58.709 42.857 0.00 0.00 45.37 3.14
93 94 1.100510 ACAATCGCTCATTGCAGCAT 58.899 45.000 0.00 0.00 45.37 3.79
94 95 1.398041 GTACAATCGCTCATTGCAGCA 59.602 47.619 0.00 0.00 45.37 4.41
95 96 1.593070 CGTACAATCGCTCATTGCAGC 60.593 52.381 5.40 0.00 45.37 5.25
96 97 1.926510 TCGTACAATCGCTCATTGCAG 59.073 47.619 5.40 0.00 45.37 4.41
97 98 1.926510 CTCGTACAATCGCTCATTGCA 59.073 47.619 5.40 0.00 45.37 4.08
98 99 1.332377 GCTCGTACAATCGCTCATTGC 60.332 52.381 5.40 0.00 45.37 3.56
99 100 1.926510 TGCTCGTACAATCGCTCATTG 59.073 47.619 4.19 4.19 46.70 2.82
100 101 2.293677 TGCTCGTACAATCGCTCATT 57.706 45.000 0.00 0.00 0.00 2.57
101 102 2.515926 ATGCTCGTACAATCGCTCAT 57.484 45.000 0.00 0.00 0.00 2.90
102 103 2.293677 AATGCTCGTACAATCGCTCA 57.706 45.000 0.00 0.00 0.00 4.26
103 104 3.658351 AAAATGCTCGTACAATCGCTC 57.342 42.857 0.00 0.00 0.00 5.03
104 105 4.630069 ACTTAAAATGCTCGTACAATCGCT 59.370 37.500 0.00 0.00 0.00 4.93
105 106 4.893795 ACTTAAAATGCTCGTACAATCGC 58.106 39.130 0.00 0.00 0.00 4.58
106 107 5.732647 CCAACTTAAAATGCTCGTACAATCG 59.267 40.000 0.00 0.00 0.00 3.34
107 108 6.608610 ACCAACTTAAAATGCTCGTACAATC 58.391 36.000 0.00 0.00 0.00 2.67
108 109 6.569179 ACCAACTTAAAATGCTCGTACAAT 57.431 33.333 0.00 0.00 0.00 2.71
109 110 6.380095 AACCAACTTAAAATGCTCGTACAA 57.620 33.333 0.00 0.00 0.00 2.41
110 111 7.493743 TTAACCAACTTAAAATGCTCGTACA 57.506 32.000 0.00 0.00 0.00 2.90
117 118 9.705290 CCCCATATATTAACCAACTTAAAATGC 57.295 33.333 0.00 0.00 0.00 3.56
145 146 6.033725 GTGACGGCGTTTCTTTTTCTTAAAAA 59.966 34.615 16.19 0.00 37.99 1.94
146 147 5.512434 GTGACGGCGTTTCTTTTTCTTAAAA 59.488 36.000 16.19 0.00 0.00 1.52
147 148 5.029654 GTGACGGCGTTTCTTTTTCTTAAA 58.970 37.500 16.19 0.00 0.00 1.52
148 149 4.496175 GGTGACGGCGTTTCTTTTTCTTAA 60.496 41.667 16.19 0.00 0.00 1.85
149 150 3.002553 GGTGACGGCGTTTCTTTTTCTTA 59.997 43.478 16.19 0.00 0.00 2.10
150 151 2.223409 GGTGACGGCGTTTCTTTTTCTT 60.223 45.455 16.19 0.00 0.00 2.52
151 152 1.332686 GGTGACGGCGTTTCTTTTTCT 59.667 47.619 16.19 0.00 0.00 2.52
152 153 1.598676 GGGTGACGGCGTTTCTTTTTC 60.599 52.381 16.19 0.00 0.00 2.29
153 154 0.382873 GGGTGACGGCGTTTCTTTTT 59.617 50.000 16.19 0.00 0.00 1.94
154 155 1.778027 CGGGTGACGGCGTTTCTTTT 61.778 55.000 16.19 0.00 39.42 2.27
155 156 2.248835 CGGGTGACGGCGTTTCTTT 61.249 57.895 16.19 0.00 39.42 2.52
156 157 2.663852 CGGGTGACGGCGTTTCTT 60.664 61.111 16.19 0.00 39.42 2.52
180 181 2.476852 TATTCCTTGCAGGTGCGGCA 62.477 55.000 0.00 0.00 45.83 5.69
181 182 1.312371 TTATTCCTTGCAGGTGCGGC 61.312 55.000 0.00 0.00 45.83 6.53
182 183 1.173043 TTTATTCCTTGCAGGTGCGG 58.827 50.000 0.00 0.00 45.83 5.69
183 184 3.296322 TTTTTATTCCTTGCAGGTGCG 57.704 42.857 0.00 0.00 45.83 5.34
184 185 5.077134 AGATTTTTATTCCTTGCAGGTGC 57.923 39.130 0.00 0.00 36.53 5.01
185 186 6.521151 AGAGATTTTTATTCCTTGCAGGTG 57.479 37.500 0.00 0.00 36.53 4.00
186 187 8.829373 ATTAGAGATTTTTATTCCTTGCAGGT 57.171 30.769 0.00 0.00 36.53 4.00
187 188 9.129532 AGATTAGAGATTTTTATTCCTTGCAGG 57.870 33.333 0.00 0.00 36.46 4.85
204 205 9.896645 TCTTCGGTTAGTACTTTAGATTAGAGA 57.103 33.333 0.00 0.00 0.00 3.10
206 207 9.896645 TCTCTTCGGTTAGTACTTTAGATTAGA 57.103 33.333 0.00 0.56 0.00 2.10
209 210 8.468399 CCTTCTCTTCGGTTAGTACTTTAGATT 58.532 37.037 0.00 0.00 0.00 2.40
210 211 7.416551 GCCTTCTCTTCGGTTAGTACTTTAGAT 60.417 40.741 0.00 0.00 0.00 1.98
211 212 6.127786 GCCTTCTCTTCGGTTAGTACTTTAGA 60.128 42.308 0.00 0.00 0.00 2.10
212 213 6.035217 GCCTTCTCTTCGGTTAGTACTTTAG 58.965 44.000 0.00 0.00 0.00 1.85
213 214 5.477984 TGCCTTCTCTTCGGTTAGTACTTTA 59.522 40.000 0.00 0.00 0.00 1.85
214 215 4.282703 TGCCTTCTCTTCGGTTAGTACTTT 59.717 41.667 0.00 0.00 0.00 2.66
215 216 3.830755 TGCCTTCTCTTCGGTTAGTACTT 59.169 43.478 0.00 0.00 0.00 2.24
216 217 3.193056 GTGCCTTCTCTTCGGTTAGTACT 59.807 47.826 0.00 0.00 0.00 2.73
217 218 3.509740 GTGCCTTCTCTTCGGTTAGTAC 58.490 50.000 0.00 0.00 0.00 2.73
218 219 2.494870 GGTGCCTTCTCTTCGGTTAGTA 59.505 50.000 0.00 0.00 0.00 1.82
219 220 1.275573 GGTGCCTTCTCTTCGGTTAGT 59.724 52.381 0.00 0.00 0.00 2.24
220 221 1.550976 AGGTGCCTTCTCTTCGGTTAG 59.449 52.381 0.00 0.00 0.00 2.34
221 222 1.275291 CAGGTGCCTTCTCTTCGGTTA 59.725 52.381 0.00 0.00 0.00 2.85
222 223 0.035458 CAGGTGCCTTCTCTTCGGTT 59.965 55.000 0.00 0.00 0.00 4.44
223 224 1.674057 CAGGTGCCTTCTCTTCGGT 59.326 57.895 0.00 0.00 0.00 4.69
224 225 1.078848 CCAGGTGCCTTCTCTTCGG 60.079 63.158 0.00 0.00 0.00 4.30
225 226 0.539051 ATCCAGGTGCCTTCTCTTCG 59.461 55.000 0.00 0.00 0.00 3.79
226 227 2.238395 AGAATCCAGGTGCCTTCTCTTC 59.762 50.000 0.00 0.00 0.00 2.87
227 228 2.238395 GAGAATCCAGGTGCCTTCTCTT 59.762 50.000 9.33 0.00 40.16 2.85
228 229 1.836802 GAGAATCCAGGTGCCTTCTCT 59.163 52.381 9.33 0.94 40.16 3.10
229 230 1.836802 AGAGAATCCAGGTGCCTTCTC 59.163 52.381 8.78 8.78 42.44 2.87
230 231 1.963985 AGAGAATCCAGGTGCCTTCT 58.036 50.000 0.00 0.00 33.66 2.85
231 232 2.637947 GAAGAGAATCCAGGTGCCTTC 58.362 52.381 0.00 0.00 33.66 3.46
232 233 1.283321 GGAAGAGAATCCAGGTGCCTT 59.717 52.381 0.00 0.00 39.42 4.35
233 234 0.915364 GGAAGAGAATCCAGGTGCCT 59.085 55.000 0.00 0.00 39.42 4.75
234 235 0.106967 GGGAAGAGAATCCAGGTGCC 60.107 60.000 0.00 0.00 41.55 5.01
235 236 0.106967 GGGGAAGAGAATCCAGGTGC 60.107 60.000 0.00 0.00 41.55 5.01
236 237 0.179000 CGGGGAAGAGAATCCAGGTG 59.821 60.000 0.00 0.00 41.55 4.00
237 238 1.627297 GCGGGGAAGAGAATCCAGGT 61.627 60.000 0.00 0.00 41.55 4.00
238 239 1.147153 GCGGGGAAGAGAATCCAGG 59.853 63.158 0.00 0.00 41.55 4.45
239 240 1.147153 GGCGGGGAAGAGAATCCAG 59.853 63.158 0.00 0.00 41.55 3.86
240 241 1.615124 TGGCGGGGAAGAGAATCCA 60.615 57.895 0.00 0.00 41.55 3.41
241 242 1.153147 GTGGCGGGGAAGAGAATCC 60.153 63.158 0.00 0.00 38.86 3.01
242 243 1.153147 GGTGGCGGGGAAGAGAATC 60.153 63.158 0.00 0.00 0.00 2.52
243 244 2.998949 GGTGGCGGGGAAGAGAAT 59.001 61.111 0.00 0.00 0.00 2.40
244 245 3.702048 CGGTGGCGGGGAAGAGAA 61.702 66.667 0.00 0.00 0.00 2.87
272 273 3.737172 CAAACCCTTCGCCTGCCG 61.737 66.667 0.00 0.00 38.61 5.69
273 274 2.597510 ACAAACCCTTCGCCTGCC 60.598 61.111 0.00 0.00 0.00 4.85
274 275 1.452145 TTCACAAACCCTTCGCCTGC 61.452 55.000 0.00 0.00 0.00 4.85
275 276 1.200020 GATTCACAAACCCTTCGCCTG 59.800 52.381 0.00 0.00 0.00 4.85
276 277 1.534729 GATTCACAAACCCTTCGCCT 58.465 50.000 0.00 0.00 0.00 5.52
277 278 0.526211 GGATTCACAAACCCTTCGCC 59.474 55.000 0.00 0.00 0.00 5.54
278 279 1.068541 GTGGATTCACAAACCCTTCGC 60.069 52.381 0.00 0.00 43.13 4.70
279 280 2.989422 GTGGATTCACAAACCCTTCG 57.011 50.000 0.00 0.00 43.13 3.79
289 290 1.667724 CCGATGAGCTTGTGGATTCAC 59.332 52.381 0.00 0.00 43.87 3.18
290 291 1.278985 ACCGATGAGCTTGTGGATTCA 59.721 47.619 0.00 0.00 0.00 2.57
291 292 1.667724 CACCGATGAGCTTGTGGATTC 59.332 52.381 0.00 0.00 0.00 2.52
292 293 1.278985 TCACCGATGAGCTTGTGGATT 59.721 47.619 0.00 0.00 0.00 3.01
293 294 0.904649 TCACCGATGAGCTTGTGGAT 59.095 50.000 0.00 0.00 0.00 3.41
294 295 0.684535 TTCACCGATGAGCTTGTGGA 59.315 50.000 0.00 0.00 35.83 4.02
295 296 1.197721 GTTTCACCGATGAGCTTGTGG 59.802 52.381 0.00 0.00 35.83 4.17
296 297 1.197721 GGTTTCACCGATGAGCTTGTG 59.802 52.381 0.00 0.00 35.83 3.33
297 298 1.072331 AGGTTTCACCGATGAGCTTGT 59.928 47.619 0.00 0.00 44.90 3.16
298 299 1.466167 CAGGTTTCACCGATGAGCTTG 59.534 52.381 0.00 0.00 44.90 4.01
299 300 1.813513 CAGGTTTCACCGATGAGCTT 58.186 50.000 0.00 0.00 44.90 3.74
300 301 0.674895 GCAGGTTTCACCGATGAGCT 60.675 55.000 0.00 0.00 44.90 4.09
301 302 1.796796 GCAGGTTTCACCGATGAGC 59.203 57.895 0.00 0.00 44.90 4.26
302 303 2.081526 CGCAGGTTTCACCGATGAG 58.918 57.895 0.00 0.00 44.90 2.90
303 304 4.277239 CGCAGGTTTCACCGATGA 57.723 55.556 0.00 0.00 44.90 2.92
316 317 4.725556 ACATGTTAATTATACGCCGCAG 57.274 40.909 0.00 0.00 0.00 5.18
317 318 4.024725 GGAACATGTTAATTATACGCCGCA 60.025 41.667 11.95 0.00 0.00 5.69
318 319 4.460505 GGAACATGTTAATTATACGCCGC 58.539 43.478 11.95 0.00 0.00 6.53
319 320 4.083696 GGGGAACATGTTAATTATACGCCG 60.084 45.833 11.95 0.00 0.00 6.46
320 321 4.216902 GGGGGAACATGTTAATTATACGCC 59.783 45.833 11.95 13.91 0.00 5.68
321 322 5.067954 AGGGGGAACATGTTAATTATACGC 58.932 41.667 11.95 5.44 0.00 4.42
322 323 5.407387 CGAGGGGGAACATGTTAATTATACG 59.593 44.000 11.95 8.73 0.00 3.06
323 324 6.293698 ACGAGGGGGAACATGTTAATTATAC 58.706 40.000 11.95 0.00 0.00 1.47
324 325 6.464749 GGACGAGGGGGAACATGTTAATTATA 60.465 42.308 11.95 0.00 0.00 0.98
325 326 5.374071 GACGAGGGGGAACATGTTAATTAT 58.626 41.667 11.95 0.00 0.00 1.28
326 327 4.384427 GGACGAGGGGGAACATGTTAATTA 60.384 45.833 11.95 0.00 0.00 1.40
327 328 3.617284 GACGAGGGGGAACATGTTAATT 58.383 45.455 11.95 0.00 0.00 1.40
328 329 2.092592 GGACGAGGGGGAACATGTTAAT 60.093 50.000 11.95 0.00 0.00 1.40
329 330 1.279846 GGACGAGGGGGAACATGTTAA 59.720 52.381 11.95 0.00 0.00 2.01
330 331 0.906775 GGACGAGGGGGAACATGTTA 59.093 55.000 11.95 0.00 0.00 2.41
331 332 1.131303 TGGACGAGGGGGAACATGTT 61.131 55.000 11.78 11.78 0.00 2.71
332 333 1.537889 TGGACGAGGGGGAACATGT 60.538 57.895 0.00 0.00 0.00 3.21
333 334 1.221840 CTGGACGAGGGGGAACATG 59.778 63.158 0.00 0.00 0.00 3.21
334 335 1.080354 TCTGGACGAGGGGGAACAT 59.920 57.895 0.00 0.00 0.00 2.71
335 336 1.911766 GTCTGGACGAGGGGGAACA 60.912 63.158 0.00 0.00 0.00 3.18
336 337 2.657066 GGTCTGGACGAGGGGGAAC 61.657 68.421 0.00 0.00 0.00 3.62
337 338 2.284405 GGTCTGGACGAGGGGGAA 60.284 66.667 0.00 0.00 0.00 3.97
338 339 4.393778 GGGTCTGGACGAGGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
339 340 4.715130 TGGGTCTGGACGAGGGGG 62.715 72.222 0.00 0.00 0.00 5.40
340 341 2.365635 ATGGGTCTGGACGAGGGG 60.366 66.667 0.00 0.00 0.00 4.79
341 342 2.786495 CGATGGGTCTGGACGAGGG 61.786 68.421 0.00 0.00 0.00 4.30
342 343 2.808315 CGATGGGTCTGGACGAGG 59.192 66.667 0.00 0.00 0.00 4.63
343 344 2.105128 GCGATGGGTCTGGACGAG 59.895 66.667 0.00 0.00 0.00 4.18
344 345 2.225791 CTTGCGATGGGTCTGGACGA 62.226 60.000 0.00 0.00 0.00 4.20
345 346 1.811266 CTTGCGATGGGTCTGGACG 60.811 63.158 0.00 0.00 0.00 4.79
346 347 1.450312 CCTTGCGATGGGTCTGGAC 60.450 63.158 0.00 0.00 0.00 4.02
347 348 1.198094 TTCCTTGCGATGGGTCTGGA 61.198 55.000 0.00 0.00 0.00 3.86
348 349 0.322456 TTTCCTTGCGATGGGTCTGG 60.322 55.000 0.00 0.00 0.00 3.86
349 350 1.089920 CTTTCCTTGCGATGGGTCTG 58.910 55.000 0.00 0.00 0.00 3.51
350 351 0.678048 GCTTTCCTTGCGATGGGTCT 60.678 55.000 0.00 0.00 0.00 3.85
351 352 1.803289 GCTTTCCTTGCGATGGGTC 59.197 57.895 0.00 0.00 0.00 4.46
352 353 4.002797 GCTTTCCTTGCGATGGGT 57.997 55.556 0.00 0.00 0.00 4.51
359 360 2.812011 TCTAGGTTTTCGCTTTCCTTGC 59.188 45.455 0.00 0.00 0.00 4.01
360 361 5.629079 AATCTAGGTTTTCGCTTTCCTTG 57.371 39.130 0.00 0.00 0.00 3.61
361 362 5.564848 GCAAATCTAGGTTTTCGCTTTCCTT 60.565 40.000 0.00 0.00 0.00 3.36
362 363 4.082733 GCAAATCTAGGTTTTCGCTTTCCT 60.083 41.667 0.00 0.00 0.00 3.36
363 364 4.082733 AGCAAATCTAGGTTTTCGCTTTCC 60.083 41.667 7.34 0.00 0.00 3.13
364 365 5.048153 AGCAAATCTAGGTTTTCGCTTTC 57.952 39.130 7.34 0.00 0.00 2.62
365 366 5.453567 AAGCAAATCTAGGTTTTCGCTTT 57.546 34.783 16.42 5.45 32.05 3.51
366 367 5.453567 AAAGCAAATCTAGGTTTTCGCTT 57.546 34.783 16.42 16.42 33.32 4.68
367 368 6.456988 CGATAAAGCAAATCTAGGTTTTCGCT 60.457 38.462 7.34 7.34 37.75 4.93
368 369 5.677178 CGATAAAGCAAATCTAGGTTTTCGC 59.323 40.000 0.00 0.25 37.75 4.70
369 370 6.192360 CCGATAAAGCAAATCTAGGTTTTCG 58.808 40.000 9.87 9.87 37.75 3.46
370 371 6.095021 ACCCGATAAAGCAAATCTAGGTTTTC 59.905 38.462 0.00 0.00 37.75 2.29
371 372 5.949952 ACCCGATAAAGCAAATCTAGGTTTT 59.050 36.000 0.00 0.00 37.75 2.43
372 373 5.506708 ACCCGATAAAGCAAATCTAGGTTT 58.493 37.500 0.00 0.00 39.66 3.27
373 374 5.112129 ACCCGATAAAGCAAATCTAGGTT 57.888 39.130 0.00 0.00 28.59 3.50
374 375 4.772886 ACCCGATAAAGCAAATCTAGGT 57.227 40.909 0.00 0.00 0.00 3.08
375 376 6.464222 TGATACCCGATAAAGCAAATCTAGG 58.536 40.000 0.00 0.00 0.00 3.02
376 377 7.962964 TTGATACCCGATAAAGCAAATCTAG 57.037 36.000 0.00 0.00 0.00 2.43
377 378 7.042321 CGTTTGATACCCGATAAAGCAAATCTA 60.042 37.037 0.00 0.00 0.00 1.98
378 379 6.238374 CGTTTGATACCCGATAAAGCAAATCT 60.238 38.462 0.00 0.00 0.00 2.40
379 380 5.907391 CGTTTGATACCCGATAAAGCAAATC 59.093 40.000 0.00 0.00 0.00 2.17
380 381 5.220970 CCGTTTGATACCCGATAAAGCAAAT 60.221 40.000 0.00 0.00 0.00 2.32
381 382 4.095185 CCGTTTGATACCCGATAAAGCAAA 59.905 41.667 0.00 0.00 0.00 3.68
382 383 3.623960 CCGTTTGATACCCGATAAAGCAA 59.376 43.478 0.00 0.00 0.00 3.91
383 384 3.199677 CCGTTTGATACCCGATAAAGCA 58.800 45.455 0.00 0.00 0.00 3.91
384 385 2.546789 CCCGTTTGATACCCGATAAAGC 59.453 50.000 0.00 0.00 0.00 3.51
385 386 4.062677 TCCCGTTTGATACCCGATAAAG 57.937 45.455 0.00 0.00 0.00 1.85
386 387 4.080975 AGTTCCCGTTTGATACCCGATAAA 60.081 41.667 0.00 0.00 0.00 1.40
387 388 3.451902 AGTTCCCGTTTGATACCCGATAA 59.548 43.478 0.00 0.00 0.00 1.75
388 389 3.033184 AGTTCCCGTTTGATACCCGATA 58.967 45.455 0.00 0.00 0.00 2.92
389 390 1.835531 AGTTCCCGTTTGATACCCGAT 59.164 47.619 0.00 0.00 0.00 4.18
390 391 1.205417 GAGTTCCCGTTTGATACCCGA 59.795 52.381 0.00 0.00 0.00 5.14
391 392 1.648504 GAGTTCCCGTTTGATACCCG 58.351 55.000 0.00 0.00 0.00 5.28
392 393 2.034104 GGAGTTCCCGTTTGATACCC 57.966 55.000 0.00 0.00 0.00 3.69
403 404 3.504520 TGTTTTATTTGCTCGGAGTTCCC 59.495 43.478 6.90 0.00 0.00 3.97
404 405 4.023536 TGTGTTTTATTTGCTCGGAGTTCC 60.024 41.667 6.90 0.00 0.00 3.62
405 406 5.103290 TGTGTTTTATTTGCTCGGAGTTC 57.897 39.130 6.90 0.00 0.00 3.01
406 407 5.705609 ATGTGTTTTATTTGCTCGGAGTT 57.294 34.783 6.90 0.00 0.00 3.01
407 408 5.705609 AATGTGTTTTATTTGCTCGGAGT 57.294 34.783 6.90 0.00 0.00 3.85
408 409 6.148948 TGAAATGTGTTTTATTTGCTCGGAG 58.851 36.000 0.00 0.00 0.00 4.63
409 410 6.078202 TGAAATGTGTTTTATTTGCTCGGA 57.922 33.333 0.00 0.00 0.00 4.55
410 411 6.761731 TTGAAATGTGTTTTATTTGCTCGG 57.238 33.333 0.00 0.00 0.00 4.63
411 412 8.538856 TCTTTTGAAATGTGTTTTATTTGCTCG 58.461 29.630 0.00 0.00 0.00 5.03
414 415 9.986833 ACTTCTTTTGAAATGTGTTTTATTTGC 57.013 25.926 0.00 0.00 38.07 3.68
418 419 9.533253 CCAGACTTCTTTTGAAATGTGTTTTAT 57.467 29.630 0.00 0.00 38.07 1.40
419 420 8.744652 TCCAGACTTCTTTTGAAATGTGTTTTA 58.255 29.630 0.00 0.00 38.07 1.52
420 421 7.610865 TCCAGACTTCTTTTGAAATGTGTTTT 58.389 30.769 0.00 0.00 38.07 2.43
421 422 7.169158 TCCAGACTTCTTTTGAAATGTGTTT 57.831 32.000 0.00 0.00 38.07 2.83
422 423 6.183360 CCTCCAGACTTCTTTTGAAATGTGTT 60.183 38.462 0.00 0.00 38.07 3.32
423 424 5.300286 CCTCCAGACTTCTTTTGAAATGTGT 59.700 40.000 0.00 0.00 38.07 3.72
424 425 5.532406 TCCTCCAGACTTCTTTTGAAATGTG 59.468 40.000 0.00 0.00 38.07 3.21
425 426 5.694995 TCCTCCAGACTTCTTTTGAAATGT 58.305 37.500 0.00 0.00 38.07 2.71
426 427 6.639632 TTCCTCCAGACTTCTTTTGAAATG 57.360 37.500 0.00 0.00 38.07 2.32
427 428 7.062957 TCTTTCCTCCAGACTTCTTTTGAAAT 58.937 34.615 0.00 0.00 38.07 2.17
428 429 6.423182 TCTTTCCTCCAGACTTCTTTTGAAA 58.577 36.000 0.00 0.00 38.07 2.69
429 430 6.001449 TCTTTCCTCCAGACTTCTTTTGAA 57.999 37.500 0.00 0.00 36.89 2.69
430 431 5.366768 TCTCTTTCCTCCAGACTTCTTTTGA 59.633 40.000 0.00 0.00 0.00 2.69
431 432 5.615289 TCTCTTTCCTCCAGACTTCTTTTG 58.385 41.667 0.00 0.00 0.00 2.44
432 433 5.896073 TCTCTTTCCTCCAGACTTCTTTT 57.104 39.130 0.00 0.00 0.00 2.27
433 434 6.183361 ACAATCTCTTTCCTCCAGACTTCTTT 60.183 38.462 0.00 0.00 0.00 2.52
434 435 5.309282 ACAATCTCTTTCCTCCAGACTTCTT 59.691 40.000 0.00 0.00 0.00 2.52
435 436 4.843516 ACAATCTCTTTCCTCCAGACTTCT 59.156 41.667 0.00 0.00 0.00 2.85
441 442 5.055812 GCTATGACAATCTCTTTCCTCCAG 58.944 45.833 0.00 0.00 0.00 3.86
444 445 4.054671 CGGCTATGACAATCTCTTTCCTC 58.945 47.826 0.00 0.00 0.00 3.71
448 449 2.171448 AGGCGGCTATGACAATCTCTTT 59.829 45.455 11.03 0.00 0.00 2.52
449 450 1.765314 AGGCGGCTATGACAATCTCTT 59.235 47.619 11.03 0.00 0.00 2.85
453 454 2.821991 ACTAGGCGGCTATGACAATC 57.178 50.000 20.06 0.00 0.00 2.67
454 455 4.891992 AATACTAGGCGGCTATGACAAT 57.108 40.909 20.06 6.08 0.00 2.71
497 498 5.691896 AGAGTACAAACAAAAACCTAGGCT 58.308 37.500 9.30 0.00 0.00 4.58
594 601 0.333312 TCTTGGGTTGTTGTGTGGGT 59.667 50.000 0.00 0.00 0.00 4.51
601 608 3.636300 TGTGGATTTCTCTTGGGTTGTTG 59.364 43.478 0.00 0.00 0.00 3.33
602 609 3.636764 GTGTGGATTTCTCTTGGGTTGTT 59.363 43.478 0.00 0.00 0.00 2.83
614 621 0.804544 TCGATCGCCGTGTGGATTTC 60.805 55.000 11.09 0.00 39.75 2.17
673 680 0.448990 GTTTAAATCGGGTGTCGGCC 59.551 55.000 0.00 0.00 39.77 6.13
674 681 1.445871 AGTTTAAATCGGGTGTCGGC 58.554 50.000 0.00 0.00 39.77 5.54
675 682 3.368843 GTGTAGTTTAAATCGGGTGTCGG 59.631 47.826 0.00 0.00 39.77 4.79
684 691 6.542735 GGAGGGGAGAATGTGTAGTTTAAATC 59.457 42.308 0.00 0.00 0.00 2.17
685 692 6.424032 GGAGGGGAGAATGTGTAGTTTAAAT 58.576 40.000 0.00 0.00 0.00 1.40
714 721 7.999679 TGAAATTTGAAGGATATGATGTCACC 58.000 34.615 0.00 0.00 0.00 4.02
764 771 1.507174 CGACGGTGAGGAGGAAGAC 59.493 63.158 0.00 0.00 0.00 3.01
765 779 2.341101 GCGACGGTGAGGAGGAAGA 61.341 63.158 0.00 0.00 0.00 2.87
779 793 3.272334 GCCGATGGTGATGGCGAC 61.272 66.667 0.00 0.00 39.30 5.19
807 821 2.452491 AGGAAGGGGGTGGCTTGT 60.452 61.111 0.00 0.00 0.00 3.16
827 841 1.831736 GGCGTGGAGGTATATATGGCT 59.168 52.381 0.00 0.00 0.00 4.75
918 953 1.299541 CGTGAGAGAGAGAGGAGAGC 58.700 60.000 0.00 0.00 0.00 4.09
924 959 3.504134 TCTGTTTTCCGTGAGAGAGAGAG 59.496 47.826 0.00 0.00 0.00 3.20
929 964 2.548067 GCCTTCTGTTTTCCGTGAGAGA 60.548 50.000 0.00 0.00 0.00 3.10
936 2592 1.443802 GGAGAGCCTTCTGTTTTCCG 58.556 55.000 0.00 0.00 32.53 4.30
938 2594 1.443802 CCGGAGAGCCTTCTGTTTTC 58.556 55.000 0.00 0.00 32.53 2.29
964 2620 2.043248 GGTGTAGAGCTCGGGGGA 60.043 66.667 8.37 0.00 0.00 4.81
967 2623 3.528370 CGGGGTGTAGAGCTCGGG 61.528 72.222 8.37 0.00 40.01 5.14
991 2649 0.767375 TGCTCCCCCATTAGAGATGC 59.233 55.000 0.00 0.00 31.43 3.91
1299 2980 1.064946 CTGCGGCTTCTCCTCTACG 59.935 63.158 0.00 0.00 0.00 3.51
1385 3066 3.197549 GCACTTGATCTTCTTCCTCCTCT 59.802 47.826 0.00 0.00 0.00 3.69
1713 3406 8.758829 ACCACTGTAAATATGTTCATCTAGTGA 58.241 33.333 0.00 0.00 35.15 3.41
1714 3407 8.948631 ACCACTGTAAATATGTTCATCTAGTG 57.051 34.615 0.00 0.00 33.51 2.74
1715 3408 8.982723 AGACCACTGTAAATATGTTCATCTAGT 58.017 33.333 0.00 0.00 0.00 2.57
1729 3430 6.404293 GCAAGTTCTTTCAAGACCACTGTAAA 60.404 38.462 0.00 0.00 34.13 2.01
1732 3433 3.378427 GCAAGTTCTTTCAAGACCACTGT 59.622 43.478 0.00 0.00 34.13 3.55
1744 3449 0.827507 ACCATGGGCGCAAGTTCTTT 60.828 50.000 18.09 0.00 41.68 2.52
1755 3460 3.023832 ACTAGTATTTGCAACCATGGGC 58.976 45.455 18.09 11.53 0.00 5.36
1778 3647 3.136626 ACCAGGGAGGCTTACATAATCAC 59.863 47.826 0.00 0.00 43.14 3.06
1892 3761 4.158949 TCTCCACATGGCATTTTCAAGATG 59.841 41.667 0.00 0.00 34.44 2.90
1900 3775 3.387374 TGTTTGTTCTCCACATGGCATTT 59.613 39.130 0.00 0.00 34.43 2.32
1902 3777 2.559668 CTGTTTGTTCTCCACATGGCAT 59.440 45.455 0.00 0.00 34.43 4.40
1920 3795 5.418840 AGTTTTGAAACCATCACTGTTCTGT 59.581 36.000 3.14 0.00 39.71 3.41
2013 5645 9.710900 ATTGAGTATGATTTTCCTTCCAAAAAC 57.289 29.630 0.00 0.00 0.00 2.43
2039 5680 9.814899 TGCAAAAAGAGAAAAATGTTATTCAGA 57.185 25.926 0.00 0.00 0.00 3.27
2048 5689 7.225145 TCCATCTTGTGCAAAAAGAGAAAAATG 59.775 33.333 15.92 9.54 44.90 2.32
2125 5767 6.927294 AAGAGAAAAACAGACACCACTTAG 57.073 37.500 0.00 0.00 0.00 2.18
2154 5798 4.989797 TGATTGTCCACATCATTTTGCAAC 59.010 37.500 0.00 0.00 0.00 4.17
2175 5819 4.770010 TCATAGTCACATACACACACCTGA 59.230 41.667 0.00 0.00 0.00 3.86
2230 5874 9.408648 CCTAGAAGAATGGTGGTACAAAAATAT 57.591 33.333 0.00 0.00 44.16 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.