Multiple sequence alignment - TraesCS7A01G388400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G388400 chr7A 100.000 2535 0 0 1 2535 563842039 563839505 0.000000e+00 4682.0
1 TraesCS7A01G388400 chr7A 98.710 310 2 2 292 600 20027589 20027897 1.330000e-152 549.0
2 TraesCS7A01G388400 chr7B 88.882 1583 101 40 712 2247 526682661 526681107 0.000000e+00 1879.0
3 TraesCS7A01G388400 chr7B 90.196 51 3 2 2060 2108 427397883 427397933 5.850000e-07 65.8
4 TraesCS7A01G388400 chr7D 89.398 1330 84 33 712 2000 498229797 498228484 0.000000e+00 1622.0
5 TraesCS7A01G388400 chr7D 92.982 57 3 1 596 651 498234197 498234141 5.810000e-12 82.4
6 TraesCS7A01G388400 chr2D 91.167 600 47 6 1 597 631989527 631988931 0.000000e+00 809.0
7 TraesCS7A01G388400 chr1B 97.500 40 1 0 2069 2108 404967978 404967939 4.530000e-08 69.4
8 TraesCS7A01G388400 chr1B 100.000 35 0 0 2077 2111 519518125 519518091 5.850000e-07 65.8
9 TraesCS7A01G388400 chr6B 95.349 43 1 1 2067 2108 545382818 545382776 1.630000e-07 67.6
10 TraesCS7A01G388400 chr3D 95.238 42 2 0 2067 2108 375193800 375193759 1.630000e-07 67.6
11 TraesCS7A01G388400 chr3B 95.238 42 2 0 2067 2108 489352766 489352725 1.630000e-07 67.6
12 TraesCS7A01G388400 chr3A 95.238 42 2 0 2067 2108 498229976 498229935 1.630000e-07 67.6
13 TraesCS7A01G388400 chr4B 84.286 70 4 5 2069 2133 454038079 454038146 7.570000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G388400 chr7A 563839505 563842039 2534 True 4682 4682 100.000 1 2535 1 chr7A.!!$R1 2534
1 TraesCS7A01G388400 chr7B 526681107 526682661 1554 True 1879 1879 88.882 712 2247 1 chr7B.!!$R1 1535
2 TraesCS7A01G388400 chr7D 498228484 498229797 1313 True 1622 1622 89.398 712 2000 1 chr7D.!!$R1 1288
3 TraesCS7A01G388400 chr2D 631988931 631989527 596 True 809 809 91.167 1 597 1 chr2D.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 699 0.037605 AACTGCTAAACGTCCCTCGG 60.038 55.0 0.0 0.0 44.69 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 2423 0.041386 ACTTTCGGCTCTCCCCTACT 59.959 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 1.481772 GCCCCATAATGCAATGTGTGT 59.518 47.619 0.00 0.00 0.00 3.72
58 60 2.022764 TGTGTGTTCTGTGTGACCAG 57.977 50.000 0.00 0.00 0.00 4.00
69 71 4.042062 TCTGTGTGACCAGGAAAATGAGAT 59.958 41.667 0.00 0.00 33.14 2.75
85 87 0.832626 AGATGGCGGATCACATCACA 59.167 50.000 19.77 1.94 44.50 3.58
124 126 2.746362 CAAAGAGGTCTGGATGCAGTTC 59.254 50.000 14.43 10.38 0.00 3.01
133 135 1.034292 GGATGCAGTTCCAAGGAGGC 61.034 60.000 1.24 3.46 37.29 4.70
137 139 0.324943 GCAGTTCCAAGGAGGCACTA 59.675 55.000 5.09 0.00 42.33 2.74
152 154 3.072184 AGGCACTAGGAGAATGGCAATAG 59.928 47.826 6.62 0.00 41.15 1.73
153 155 3.071602 GGCACTAGGAGAATGGCAATAGA 59.928 47.826 0.00 0.00 38.69 1.98
156 158 4.346418 CACTAGGAGAATGGCAATAGAGGT 59.654 45.833 0.00 0.00 0.00 3.85
172 174 2.970324 GTTCCGTCGGCTGCAACA 60.970 61.111 6.34 0.00 0.00 3.33
188 190 2.168313 GCAACAATTAGGGAATGGTGGG 59.832 50.000 0.00 0.00 29.01 4.61
226 228 0.328592 GGGGGACAAAGGAGAGGAAC 59.671 60.000 0.00 0.00 0.00 3.62
241 243 3.149196 GAGGAACAAGGAGCAAATCACA 58.851 45.455 0.00 0.00 0.00 3.58
250 252 0.740737 AGCAAATCACATTAGCGGCC 59.259 50.000 0.00 0.00 0.00 6.13
253 255 2.287009 GCAAATCACATTAGCGGCCTAC 60.287 50.000 0.00 0.00 0.00 3.18
259 261 1.134098 ACATTAGCGGCCTACATTGCT 60.134 47.619 0.00 3.05 41.32 3.91
273 275 3.087031 ACATTGCTTGGAACATCTGGAG 58.913 45.455 0.00 0.00 39.30 3.86
289 291 6.445139 ACATCTGGAGGGAAAGAAATAGAAGA 59.555 38.462 0.00 0.00 0.00 2.87
301 303 9.612620 GAAAGAAATAGAAGAATTTTCGAGCAA 57.387 29.630 0.00 0.00 35.14 3.91
338 340 3.193267 GGTTGCACTTGCTGGAATGATAA 59.807 43.478 2.33 0.00 42.66 1.75
370 372 1.067776 CGAGTTTTCTACGAGGCCACT 60.068 52.381 5.01 0.00 0.00 4.00
382 384 3.068881 GCCACTAGCCCTGTGACA 58.931 61.111 3.34 0.00 37.60 3.58
385 387 1.209504 GCCACTAGCCCTGTGACAATA 59.790 52.381 3.34 0.00 37.60 1.90
417 419 2.637947 GCTGGAGGAGGAAATTGTCTC 58.362 52.381 0.98 0.98 0.00 3.36
421 423 3.905331 GGAGGAAATTGTCTCCCCC 57.095 57.895 13.56 0.00 42.72 5.40
454 456 6.367374 TTTTGTTGGTTTTCTTCCTCCTTT 57.633 33.333 0.00 0.00 0.00 3.11
461 463 2.009681 TTCTTCCTCCTTTTTGCCCC 57.990 50.000 0.00 0.00 0.00 5.80
465 467 1.228988 CCTCCTTTTTGCCCCTGCT 60.229 57.895 0.00 0.00 38.71 4.24
480 482 2.991540 GCTTTTTGAGGGCCGCCT 60.992 61.111 9.86 0.00 0.00 5.52
563 566 7.161404 TGCATGTTGTAATGACTTTCTCTACT 58.839 34.615 0.00 0.00 0.00 2.57
606 609 2.354199 GCTCCTGCTGTTTCAAGATAGC 59.646 50.000 0.00 0.00 36.72 2.97
607 610 2.941720 CTCCTGCTGTTTCAAGATAGCC 59.058 50.000 0.00 0.00 35.36 3.93
608 611 2.305635 TCCTGCTGTTTCAAGATAGCCA 59.694 45.455 0.00 0.00 35.36 4.75
609 612 3.054139 TCCTGCTGTTTCAAGATAGCCAT 60.054 43.478 0.00 0.00 35.36 4.40
610 613 3.066342 CCTGCTGTTTCAAGATAGCCATG 59.934 47.826 0.00 0.00 35.36 3.66
611 614 3.689347 TGCTGTTTCAAGATAGCCATGT 58.311 40.909 0.00 0.00 35.36 3.21
612 615 3.441222 TGCTGTTTCAAGATAGCCATGTG 59.559 43.478 0.00 0.00 35.36 3.21
613 616 3.691118 GCTGTTTCAAGATAGCCATGTGA 59.309 43.478 0.00 0.00 0.00 3.58
614 617 4.337555 GCTGTTTCAAGATAGCCATGTGAT 59.662 41.667 0.00 0.00 0.00 3.06
615 618 5.528690 GCTGTTTCAAGATAGCCATGTGATA 59.471 40.000 0.00 0.00 0.00 2.15
616 619 6.206243 GCTGTTTCAAGATAGCCATGTGATAT 59.794 38.462 0.00 0.00 0.00 1.63
617 620 7.388776 GCTGTTTCAAGATAGCCATGTGATATA 59.611 37.037 0.00 0.00 0.00 0.86
618 621 9.276590 CTGTTTCAAGATAGCCATGTGATATAA 57.723 33.333 0.00 0.00 0.00 0.98
619 622 9.056005 TGTTTCAAGATAGCCATGTGATATAAC 57.944 33.333 0.00 0.00 0.00 1.89
620 623 9.277783 GTTTCAAGATAGCCATGTGATATAACT 57.722 33.333 0.00 0.00 0.00 2.24
621 624 9.494271 TTTCAAGATAGCCATGTGATATAACTC 57.506 33.333 0.00 0.00 0.00 3.01
622 625 8.193953 TCAAGATAGCCATGTGATATAACTCA 57.806 34.615 0.00 0.00 0.00 3.41
623 626 8.650490 TCAAGATAGCCATGTGATATAACTCAA 58.350 33.333 0.00 0.00 0.00 3.02
624 627 9.276590 CAAGATAGCCATGTGATATAACTCAAA 57.723 33.333 0.00 0.00 0.00 2.69
625 628 9.851686 AAGATAGCCATGTGATATAACTCAAAA 57.148 29.630 0.00 0.00 0.00 2.44
626 629 9.277783 AGATAGCCATGTGATATAACTCAAAAC 57.722 33.333 0.00 0.00 0.00 2.43
627 630 8.978874 ATAGCCATGTGATATAACTCAAAACA 57.021 30.769 0.00 0.00 0.00 2.83
628 631 7.701539 AGCCATGTGATATAACTCAAAACAA 57.298 32.000 0.00 0.00 0.00 2.83
629 632 8.121305 AGCCATGTGATATAACTCAAAACAAA 57.879 30.769 0.00 0.00 0.00 2.83
630 633 8.246180 AGCCATGTGATATAACTCAAAACAAAG 58.754 33.333 0.00 0.00 0.00 2.77
631 634 8.028938 GCCATGTGATATAACTCAAAACAAAGT 58.971 33.333 0.00 0.00 0.00 2.66
632 635 9.559958 CCATGTGATATAACTCAAAACAAAGTC 57.440 33.333 0.00 0.00 0.00 3.01
635 638 9.337396 TGTGATATAACTCAAAACAAAGTCACT 57.663 29.630 0.00 0.00 0.00 3.41
675 678 7.129109 TGTACTGTACTTTTCTAAATGCTGC 57.871 36.000 17.98 0.00 0.00 5.25
676 679 6.708502 TGTACTGTACTTTTCTAAATGCTGCA 59.291 34.615 17.98 4.13 0.00 4.41
677 680 6.633500 ACTGTACTTTTCTAAATGCTGCAA 57.367 33.333 6.36 0.00 0.00 4.08
678 681 7.038154 ACTGTACTTTTCTAAATGCTGCAAA 57.962 32.000 6.36 0.00 0.00 3.68
679 682 6.918022 ACTGTACTTTTCTAAATGCTGCAAAC 59.082 34.615 6.36 0.00 0.00 2.93
680 683 7.038154 TGTACTTTTCTAAATGCTGCAAACT 57.962 32.000 6.36 0.00 0.00 2.66
681 684 6.917477 TGTACTTTTCTAAATGCTGCAAACTG 59.083 34.615 6.36 0.00 0.00 3.16
682 685 4.746611 ACTTTTCTAAATGCTGCAAACTGC 59.253 37.500 6.36 0.00 45.29 4.40
683 686 4.589216 TTTCTAAATGCTGCAAACTGCT 57.411 36.364 6.36 0.00 45.31 4.24
684 687 5.703978 TTTCTAAATGCTGCAAACTGCTA 57.296 34.783 6.36 0.00 45.31 3.49
685 688 5.703978 TTCTAAATGCTGCAAACTGCTAA 57.296 34.783 6.36 0.00 45.31 3.09
686 689 5.703978 TCTAAATGCTGCAAACTGCTAAA 57.296 34.783 6.36 0.00 45.31 1.85
687 690 5.460646 TCTAAATGCTGCAAACTGCTAAAC 58.539 37.500 6.36 0.00 45.31 2.01
688 691 2.336554 ATGCTGCAAACTGCTAAACG 57.663 45.000 6.36 0.00 45.31 3.60
689 692 1.021202 TGCTGCAAACTGCTAAACGT 58.979 45.000 0.00 0.00 45.31 3.99
690 693 1.002900 TGCTGCAAACTGCTAAACGTC 60.003 47.619 0.00 0.00 45.31 4.34
691 694 1.663161 GCTGCAAACTGCTAAACGTCC 60.663 52.381 0.00 0.00 45.31 4.79
692 695 0.948678 TGCAAACTGCTAAACGTCCC 59.051 50.000 0.00 0.00 45.31 4.46
693 696 1.235724 GCAAACTGCTAAACGTCCCT 58.764 50.000 0.00 0.00 40.96 4.20
694 697 1.197036 GCAAACTGCTAAACGTCCCTC 59.803 52.381 0.00 0.00 40.96 4.30
695 698 1.459592 CAAACTGCTAAACGTCCCTCG 59.540 52.381 0.00 0.00 46.00 4.63
696 699 0.037605 AACTGCTAAACGTCCCTCGG 60.038 55.000 0.00 0.00 44.69 4.63
697 700 1.183676 ACTGCTAAACGTCCCTCGGT 61.184 55.000 0.00 0.00 44.69 4.69
704 707 2.916702 AACGTCCCTCGGTTTTTAGT 57.083 45.000 0.00 0.00 44.69 2.24
705 708 2.159327 ACGTCCCTCGGTTTTTAGTG 57.841 50.000 0.00 0.00 44.69 2.74
706 709 0.794473 CGTCCCTCGGTTTTTAGTGC 59.206 55.000 0.00 0.00 35.71 4.40
707 710 1.162698 GTCCCTCGGTTTTTAGTGCC 58.837 55.000 0.00 0.00 0.00 5.01
708 711 1.061546 TCCCTCGGTTTTTAGTGCCT 58.938 50.000 0.00 0.00 0.00 4.75
709 712 2.027837 GTCCCTCGGTTTTTAGTGCCTA 60.028 50.000 0.00 0.00 0.00 3.93
710 713 2.638855 TCCCTCGGTTTTTAGTGCCTAA 59.361 45.455 0.00 0.00 0.00 2.69
726 729 4.027437 TGCCTAAATGGTTTTGGGATACC 58.973 43.478 5.18 0.00 44.11 2.73
772 775 8.801715 ATATCAAAACACAAGCTTAGTTGTTG 57.198 30.769 16.74 18.13 38.65 3.33
883 886 6.596497 GCAAATTGATGAAATTTCCTCCATGT 59.404 34.615 15.48 5.26 44.88 3.21
884 887 7.413657 GCAAATTGATGAAATTTCCTCCATGTG 60.414 37.037 15.48 16.33 44.88 3.21
914 926 4.347583 TGAAATTTCCTTCCATGCTGGTTT 59.652 37.500 15.48 0.00 39.03 3.27
930 943 1.411074 GGTTTCAGGAAGGGGTGTTGT 60.411 52.381 0.00 0.00 0.00 3.32
947 960 4.752101 GTGTTGTGTCTCTCAGTAATGCTT 59.248 41.667 0.00 0.00 0.00 3.91
948 961 5.237344 GTGTTGTGTCTCTCAGTAATGCTTT 59.763 40.000 0.00 0.00 0.00 3.51
958 971 6.769512 TCTCAGTAATGCTTTTTAGTGGAGT 58.230 36.000 8.58 0.00 34.60 3.85
991 1004 1.494721 ACTGGCGATCCCCAATAACAT 59.505 47.619 0.00 0.00 33.73 2.71
1008 1021 1.006998 ACATTGGGCTCCATGGCTTTA 59.993 47.619 6.96 0.00 41.48 1.85
1009 1022 1.410153 CATTGGGCTCCATGGCTTTAC 59.590 52.381 6.96 0.00 41.48 2.01
1016 1029 2.672195 GCTCCATGGCTTTACAAGTTGC 60.672 50.000 6.96 0.00 0.00 4.17
1027 1040 7.447238 TGGCTTTACAAGTTGCTAGATTACTTT 59.553 33.333 1.81 0.00 30.08 2.66
1059 1072 9.443323 TTTATGTATGTTTTAGAAGCTGTAGCA 57.557 29.630 6.65 0.00 45.16 3.49
1060 1073 6.721571 TGTATGTTTTAGAAGCTGTAGCAC 57.278 37.500 6.65 0.19 45.16 4.40
1081 1095 5.721232 CACAGGTTCGTTCTAGGATTAACT 58.279 41.667 0.00 0.00 0.00 2.24
1082 1096 5.577164 CACAGGTTCGTTCTAGGATTAACTG 59.423 44.000 0.00 0.00 0.00 3.16
1094 1108 3.518303 AGGATTAACTGTCGCCTAGGTTT 59.482 43.478 11.31 0.00 0.00 3.27
1095 1109 3.621715 GGATTAACTGTCGCCTAGGTTTG 59.378 47.826 11.31 0.80 0.00 2.93
1101 1115 1.418637 TGTCGCCTAGGTTTGGTTCTT 59.581 47.619 11.31 0.00 0.00 2.52
1150 1164 3.181451 TGAAGTGAATGCTTGAGTCCTGT 60.181 43.478 0.00 0.00 0.00 4.00
1158 1172 8.125448 GTGAATGCTTGAGTCCTGTATAATTTC 58.875 37.037 0.00 0.00 0.00 2.17
1254 1273 2.679837 TCTGATTTCTTGATTCGGCAGC 59.320 45.455 0.00 0.00 0.00 5.25
1316 1339 3.051081 AGGTGCATGTTCTGACTTCTC 57.949 47.619 0.00 0.00 0.00 2.87
1330 1357 6.190587 TCTGACTTCTCATCCTGTCTAATCA 58.809 40.000 0.00 0.00 0.00 2.57
1331 1358 6.838090 TCTGACTTCTCATCCTGTCTAATCAT 59.162 38.462 0.00 0.00 0.00 2.45
1332 1359 8.001292 TCTGACTTCTCATCCTGTCTAATCATA 58.999 37.037 0.00 0.00 0.00 2.15
1333 1360 8.175925 TGACTTCTCATCCTGTCTAATCATAG 57.824 38.462 0.00 0.00 0.00 2.23
1334 1361 7.232330 TGACTTCTCATCCTGTCTAATCATAGG 59.768 40.741 0.00 0.00 0.00 2.57
1366 1398 0.984230 TGAACACCTCTCCATGTCCC 59.016 55.000 0.00 0.00 0.00 4.46
1367 1399 0.108138 GAACACCTCTCCATGTCCCG 60.108 60.000 0.00 0.00 0.00 5.14
1368 1400 0.544357 AACACCTCTCCATGTCCCGA 60.544 55.000 0.00 0.00 0.00 5.14
1396 1428 4.071961 TGTTACAAGAAGCTGCTCAAGA 57.928 40.909 1.00 0.00 0.00 3.02
1398 1430 5.065914 TGTTACAAGAAGCTGCTCAAGAAT 58.934 37.500 1.00 0.00 0.00 2.40
1446 1478 4.081309 TCACATCATGAAGTCAGCATCTGA 60.081 41.667 0.00 0.00 34.36 3.27
1464 1496 3.391382 GCGTCCAGCTACAGGGGT 61.391 66.667 0.00 0.00 44.04 4.95
1465 1497 2.893398 CGTCCAGCTACAGGGGTC 59.107 66.667 0.00 0.00 0.00 4.46
1470 1502 4.715130 AGCTACAGGGGTCGGGCA 62.715 66.667 0.00 0.00 0.00 5.36
1488 1520 3.829026 GGGCAAACTTTCTCTTCCAAGAT 59.171 43.478 0.00 0.00 33.93 2.40
1579 1611 9.515226 AGTTATAATTTTGTAGGAAGTTGCTCA 57.485 29.630 0.00 0.00 0.00 4.26
1621 1657 5.130145 CTTTCTGTCCTACAGGAATGGAGAT 59.870 44.000 7.18 0.00 42.44 2.75
1708 1744 4.262045 GGCGCACTTATTCATAAACGTTTG 59.738 41.667 23.46 8.76 0.00 2.93
1757 1800 0.464916 GTTGTGGTGGAAACCCTCGT 60.465 55.000 0.00 0.00 0.00 4.18
1793 1836 2.301296 AGAGCGGGATGGAGTCATTATG 59.699 50.000 0.00 0.00 32.98 1.90
1800 1843 4.310769 GGATGGAGTCATTATGAAGGACG 58.689 47.826 0.00 0.00 46.10 4.79
1808 1851 4.631813 GTCATTATGAAGGACGTCAAAGCT 59.368 41.667 18.91 1.61 32.14 3.74
1814 1857 5.821516 TGAAGGACGTCAAAGCTTAAAAA 57.178 34.783 18.91 0.00 0.00 1.94
1819 1862 4.201980 GGACGTCAAAGCTTAAAAAGGTGT 60.202 41.667 18.91 0.00 39.57 4.16
1830 1878 2.159179 AAAAGGTGTTGGGTTCTGCT 57.841 45.000 0.00 0.00 0.00 4.24
1831 1879 3.306472 AAAAGGTGTTGGGTTCTGCTA 57.694 42.857 0.00 0.00 0.00 3.49
1836 1884 3.329520 AGGTGTTGGGTTCTGCTATGTAA 59.670 43.478 0.00 0.00 0.00 2.41
1873 1921 4.026356 AGAGTTGCTCATTAGTTGGCTT 57.974 40.909 0.00 0.00 32.06 4.35
1886 1934 9.627123 TCATTAGTTGGCTTAAATTGCTAGTAT 57.373 29.630 0.00 0.00 0.00 2.12
1994 2043 6.932960 ACCCTTTATAGTGTTATAATGCGGTC 59.067 38.462 0.00 0.00 32.53 4.79
2007 2056 1.252215 TGCGGTCGTTCAGATGGGTA 61.252 55.000 0.00 0.00 0.00 3.69
2008 2057 0.804933 GCGGTCGTTCAGATGGGTAC 60.805 60.000 0.00 0.00 0.00 3.34
2072 2121 7.747155 TGGATATTCCGTCTGTTTACAAAAA 57.253 32.000 0.00 0.00 40.17 1.94
2103 2152 6.884832 ACATCTTATATTTGTGAACGGAGGA 58.115 36.000 0.00 0.00 0.00 3.71
2106 2155 6.942976 TCTTATATTTGTGAACGGAGGAAGT 58.057 36.000 0.00 0.00 0.00 3.01
2117 2166 2.301870 ACGGAGGAAGTATTTGTGAGCA 59.698 45.455 0.00 0.00 0.00 4.26
2130 2179 8.131731 AGTATTTGTGAGCAGAAAGAGTTTTTC 58.868 33.333 0.00 0.00 0.00 2.29
2140 2189 8.131731 AGCAGAAAGAGTTTTTCTTATGTCAAC 58.868 33.333 5.94 0.00 45.41 3.18
2143 2192 9.178758 AGAAAGAGTTTTTCTTATGTCAACACT 57.821 29.630 2.87 0.00 45.41 3.55
2220 2269 2.910319 TGATGTTGGTACTTAGCCCAGT 59.090 45.455 0.00 0.00 31.04 4.00
2244 2293 8.531146 AGTAAATTGAATTGGTATTTGGTCTGG 58.469 33.333 0.00 0.00 0.00 3.86
2247 2296 4.340617 TGAATTGGTATTTGGTCTGGTCC 58.659 43.478 0.00 0.00 0.00 4.46
2248 2297 2.483014 TTGGTATTTGGTCTGGTCCG 57.517 50.000 0.00 0.00 0.00 4.79
2249 2298 0.616371 TGGTATTTGGTCTGGTCCGG 59.384 55.000 0.00 0.00 0.00 5.14
2250 2299 0.107361 GGTATTTGGTCTGGTCCGGG 60.107 60.000 0.00 0.00 0.00 5.73
2251 2300 0.906775 GTATTTGGTCTGGTCCGGGA 59.093 55.000 0.00 0.00 0.00 5.14
2252 2301 1.279846 GTATTTGGTCTGGTCCGGGAA 59.720 52.381 0.00 0.00 0.00 3.97
2253 2302 0.999712 ATTTGGTCTGGTCCGGGAAT 59.000 50.000 0.00 0.00 0.00 3.01
2254 2303 0.774908 TTTGGTCTGGTCCGGGAATT 59.225 50.000 0.00 0.00 0.00 2.17
2255 2304 0.037590 TTGGTCTGGTCCGGGAATTG 59.962 55.000 0.00 0.00 0.00 2.32
2256 2305 1.077716 GGTCTGGTCCGGGAATTGG 60.078 63.158 0.00 0.00 0.00 3.16
2257 2306 1.559065 GGTCTGGTCCGGGAATTGGA 61.559 60.000 0.00 0.00 0.00 3.53
2258 2307 0.107654 GTCTGGTCCGGGAATTGGAG 60.108 60.000 0.00 0.00 35.82 3.86
2259 2308 1.224592 CTGGTCCGGGAATTGGAGG 59.775 63.158 0.00 0.00 35.82 4.30
2260 2309 1.229690 TGGTCCGGGAATTGGAGGA 60.230 57.895 0.00 0.00 35.82 3.71
2261 2310 4.957164 GTCCGGGAATTGGAGGAC 57.043 61.111 0.00 6.95 45.07 3.85
2262 2311 1.223763 GTCCGGGAATTGGAGGACC 59.776 63.158 0.00 0.00 45.39 4.46
2263 2312 1.229690 TCCGGGAATTGGAGGACCA 60.230 57.895 0.00 0.00 45.34 4.02
2277 2326 2.033602 ACCAAGCGGTAGGCAACC 59.966 61.111 0.00 0.00 46.71 3.77
2278 2327 2.526046 ACCAAGCGGTAGGCAACCT 61.526 57.895 5.98 0.00 46.71 3.50
2279 2328 2.465055 ACCAAGCGGTAGGCAACCTC 62.465 60.000 5.98 0.00 46.71 3.85
2280 2329 1.296715 CAAGCGGTAGGCAACCTCT 59.703 57.895 5.98 0.47 45.55 3.69
2281 2330 1.021390 CAAGCGGTAGGCAACCTCTG 61.021 60.000 5.98 0.00 42.70 3.35
2290 2339 2.345244 CAACCTCTGCTGGCGAGT 59.655 61.111 0.00 0.00 0.00 4.18
2291 2340 1.739562 CAACCTCTGCTGGCGAGTC 60.740 63.158 0.00 0.00 0.00 3.36
2292 2341 2.948720 AACCTCTGCTGGCGAGTCC 61.949 63.158 0.00 0.00 0.00 3.85
2293 2342 4.504916 CCTCTGCTGGCGAGTCCG 62.505 72.222 0.00 0.00 37.80 4.79
2294 2343 4.504916 CTCTGCTGGCGAGTCCGG 62.505 72.222 0.00 0.00 44.43 5.14
2296 2345 4.379243 CTGCTGGCGAGTCCGGTT 62.379 66.667 0.00 0.00 43.46 4.44
2297 2346 4.373116 TGCTGGCGAGTCCGGTTC 62.373 66.667 0.00 0.00 43.46 3.62
2298 2347 4.373116 GCTGGCGAGTCCGGTTCA 62.373 66.667 0.00 0.00 43.46 3.18
2299 2348 2.342279 CTGGCGAGTCCGGTTCAA 59.658 61.111 0.00 0.00 36.43 2.69
2300 2349 1.738099 CTGGCGAGTCCGGTTCAAG 60.738 63.158 0.00 0.00 36.43 3.02
2301 2350 2.434359 GGCGAGTCCGGTTCAAGG 60.434 66.667 0.00 0.00 36.06 3.61
2302 2351 2.434359 GCGAGTCCGGTTCAAGGG 60.434 66.667 0.00 0.00 36.06 3.95
2303 2352 3.057337 CGAGTCCGGTTCAAGGGT 58.943 61.111 0.00 0.00 0.00 4.34
2304 2353 1.370064 CGAGTCCGGTTCAAGGGTT 59.630 57.895 0.00 0.00 0.00 4.11
2305 2354 0.949105 CGAGTCCGGTTCAAGGGTTG 60.949 60.000 0.00 0.00 0.00 3.77
2306 2355 1.228154 AGTCCGGTTCAAGGGTTGC 60.228 57.895 0.00 0.00 0.00 4.17
2307 2356 1.527380 GTCCGGTTCAAGGGTTGCA 60.527 57.895 0.00 0.00 0.00 4.08
2308 2357 1.228124 TCCGGTTCAAGGGTTGCAG 60.228 57.895 0.00 0.00 0.00 4.41
2309 2358 1.228124 CCGGTTCAAGGGTTGCAGA 60.228 57.895 0.00 0.00 0.00 4.26
2310 2359 1.237285 CCGGTTCAAGGGTTGCAGAG 61.237 60.000 0.00 0.00 0.00 3.35
2311 2360 1.856265 CGGTTCAAGGGTTGCAGAGC 61.856 60.000 0.00 0.00 0.00 4.09
2312 2361 1.576421 GTTCAAGGGTTGCAGAGCG 59.424 57.895 0.00 0.00 0.00 5.03
2313 2362 1.600636 TTCAAGGGTTGCAGAGCGG 60.601 57.895 0.00 0.00 0.00 5.52
2314 2363 3.058160 CAAGGGTTGCAGAGCGGG 61.058 66.667 0.00 0.00 0.00 6.13
2315 2364 3.249189 AAGGGTTGCAGAGCGGGA 61.249 61.111 0.00 0.00 0.00 5.14
2316 2365 3.259633 AAGGGTTGCAGAGCGGGAG 62.260 63.158 0.00 0.00 0.00 4.30
2351 2400 7.881643 GAAGTAGTCGATCATGCAAAGATAT 57.118 36.000 5.14 0.00 0.00 1.63
2352 2401 8.972262 GAAGTAGTCGATCATGCAAAGATATA 57.028 34.615 5.14 0.00 0.00 0.86
2353 2402 8.978564 AAGTAGTCGATCATGCAAAGATATAG 57.021 34.615 5.14 1.80 0.00 1.31
2354 2403 8.341892 AGTAGTCGATCATGCAAAGATATAGA 57.658 34.615 5.14 3.76 0.00 1.98
2355 2404 8.797438 AGTAGTCGATCATGCAAAGATATAGAA 58.203 33.333 5.14 0.00 0.00 2.10
2356 2405 9.411801 GTAGTCGATCATGCAAAGATATAGAAA 57.588 33.333 5.14 0.00 0.00 2.52
2357 2406 8.531622 AGTCGATCATGCAAAGATATAGAAAG 57.468 34.615 5.14 0.00 0.00 2.62
2358 2407 8.147058 AGTCGATCATGCAAAGATATAGAAAGT 58.853 33.333 5.14 0.00 0.00 2.66
2359 2408 9.411801 GTCGATCATGCAAAGATATAGAAAGTA 57.588 33.333 5.14 0.00 0.00 2.24
2360 2409 9.981114 TCGATCATGCAAAGATATAGAAAGTAA 57.019 29.630 5.14 0.00 0.00 2.24
2367 2416 9.719355 TGCAAAGATATAGAAAGTAAGTTGACA 57.281 29.630 0.00 0.00 0.00 3.58
2368 2417 9.974750 GCAAAGATATAGAAAGTAAGTTGACAC 57.025 33.333 0.00 0.00 0.00 3.67
2380 2429 8.617290 AAGTAAGTTGACACATAAAAGTAGGG 57.383 34.615 0.00 0.00 0.00 3.53
2381 2430 7.166167 AGTAAGTTGACACATAAAAGTAGGGG 58.834 38.462 0.00 0.00 0.00 4.79
2382 2431 5.836024 AGTTGACACATAAAAGTAGGGGA 57.164 39.130 0.00 0.00 0.00 4.81
2383 2432 5.805728 AGTTGACACATAAAAGTAGGGGAG 58.194 41.667 0.00 0.00 0.00 4.30
2384 2433 5.546499 AGTTGACACATAAAAGTAGGGGAGA 59.454 40.000 0.00 0.00 0.00 3.71
2385 2434 5.677319 TGACACATAAAAGTAGGGGAGAG 57.323 43.478 0.00 0.00 0.00 3.20
2386 2435 4.081087 TGACACATAAAAGTAGGGGAGAGC 60.081 45.833 0.00 0.00 0.00 4.09
2387 2436 3.200165 ACACATAAAAGTAGGGGAGAGCC 59.800 47.826 0.00 0.00 0.00 4.70
2388 2437 2.434702 ACATAAAAGTAGGGGAGAGCCG 59.565 50.000 0.00 0.00 33.83 5.52
2389 2438 2.537633 TAAAAGTAGGGGAGAGCCGA 57.462 50.000 0.00 0.00 33.83 5.54
2390 2439 1.652947 AAAAGTAGGGGAGAGCCGAA 58.347 50.000 0.00 0.00 33.83 4.30
2391 2440 1.652947 AAAGTAGGGGAGAGCCGAAA 58.347 50.000 0.00 0.00 33.83 3.46
2392 2441 1.196012 AAGTAGGGGAGAGCCGAAAG 58.804 55.000 0.00 0.00 33.83 2.62
2393 2442 0.041386 AGTAGGGGAGAGCCGAAAGT 59.959 55.000 0.00 0.00 33.83 2.66
2394 2443 1.287146 AGTAGGGGAGAGCCGAAAGTA 59.713 52.381 0.00 0.00 33.83 2.24
2395 2444 2.105766 GTAGGGGAGAGCCGAAAGTAA 58.894 52.381 0.00 0.00 33.83 2.24
2396 2445 1.652947 AGGGGAGAGCCGAAAGTAAA 58.347 50.000 0.00 0.00 33.83 2.01
2397 2446 1.982958 AGGGGAGAGCCGAAAGTAAAA 59.017 47.619 0.00 0.00 33.83 1.52
2398 2447 2.576648 AGGGGAGAGCCGAAAGTAAAAT 59.423 45.455 0.00 0.00 33.83 1.82
2399 2448 3.010250 AGGGGAGAGCCGAAAGTAAAATT 59.990 43.478 0.00 0.00 33.83 1.82
2400 2449 3.762288 GGGGAGAGCCGAAAGTAAAATTT 59.238 43.478 0.00 0.00 33.83 1.82
2401 2450 4.219944 GGGGAGAGCCGAAAGTAAAATTTT 59.780 41.667 8.75 8.75 33.83 1.82
2402 2451 5.161358 GGGAGAGCCGAAAGTAAAATTTTG 58.839 41.667 13.76 0.00 33.83 2.44
2403 2452 5.048294 GGGAGAGCCGAAAGTAAAATTTTGA 60.048 40.000 13.76 0.00 33.83 2.69
2404 2453 6.443792 GGAGAGCCGAAAGTAAAATTTTGAA 58.556 36.000 13.76 0.00 0.00 2.69
2405 2454 7.090808 GGAGAGCCGAAAGTAAAATTTTGAAT 58.909 34.615 13.76 0.00 0.00 2.57
2406 2455 7.598869 GGAGAGCCGAAAGTAAAATTTTGAATT 59.401 33.333 13.76 5.32 0.00 2.17
2407 2456 8.887036 AGAGCCGAAAGTAAAATTTTGAATTT 57.113 26.923 13.76 10.70 0.00 1.82
2408 2457 8.978539 AGAGCCGAAAGTAAAATTTTGAATTTC 58.021 29.630 13.76 16.58 0.00 2.17
2409 2458 8.887036 AGCCGAAAGTAAAATTTTGAATTTCT 57.113 26.923 21.80 10.59 0.00 2.52
2410 2459 8.978539 AGCCGAAAGTAAAATTTTGAATTTCTC 58.021 29.630 21.80 16.83 0.00 2.87
2411 2460 8.760569 GCCGAAAGTAAAATTTTGAATTTCTCA 58.239 29.630 21.80 0.22 0.00 3.27
2413 2462 9.783425 CGAAAGTAAAATTTTGAATTTCTCAGC 57.217 29.630 21.80 8.14 34.81 4.26
2419 2468 7.417496 AAATTTTGAATTTCTCAGCTTGAGC 57.583 32.000 7.94 0.00 43.95 4.26
2435 2484 3.506108 GCTCAATGCTCATGCCGT 58.494 55.556 0.00 0.00 38.71 5.68
2436 2485 1.063649 GCTCAATGCTCATGCCGTG 59.936 57.895 0.00 0.00 38.71 4.94
2437 2486 1.371337 GCTCAATGCTCATGCCGTGA 61.371 55.000 0.00 0.00 38.71 4.35
2438 2487 1.089112 CTCAATGCTCATGCCGTGAA 58.911 50.000 0.00 0.00 36.14 3.18
2439 2488 0.804364 TCAATGCTCATGCCGTGAAC 59.196 50.000 0.00 0.00 36.14 3.18
2440 2489 0.522626 CAATGCTCATGCCGTGAACA 59.477 50.000 0.00 0.00 37.34 3.18
2441 2490 0.806868 AATGCTCATGCCGTGAACAG 59.193 50.000 0.00 0.00 36.45 3.16
2442 2491 0.321919 ATGCTCATGCCGTGAACAGT 60.322 50.000 0.00 0.00 36.45 3.55
2443 2492 0.320050 TGCTCATGCCGTGAACAGTA 59.680 50.000 0.00 0.00 36.14 2.74
2444 2493 1.270571 TGCTCATGCCGTGAACAGTAA 60.271 47.619 0.00 0.00 36.14 2.24
2445 2494 1.804151 GCTCATGCCGTGAACAGTAAA 59.196 47.619 0.00 0.00 36.14 2.01
2446 2495 2.225491 GCTCATGCCGTGAACAGTAAAA 59.775 45.455 0.00 0.00 36.14 1.52
2447 2496 3.119849 GCTCATGCCGTGAACAGTAAAAT 60.120 43.478 0.00 0.00 36.14 1.82
2448 2497 4.615912 GCTCATGCCGTGAACAGTAAAATT 60.616 41.667 0.00 0.00 36.14 1.82
2449 2498 4.793071 TCATGCCGTGAACAGTAAAATTG 58.207 39.130 0.00 0.00 32.78 2.32
2450 2499 3.634568 TGCCGTGAACAGTAAAATTGG 57.365 42.857 0.00 0.00 0.00 3.16
2451 2500 2.294791 TGCCGTGAACAGTAAAATTGGG 59.705 45.455 0.00 0.00 0.00 4.12
2452 2501 2.554893 GCCGTGAACAGTAAAATTGGGA 59.445 45.455 0.00 0.00 0.00 4.37
2453 2502 3.004944 GCCGTGAACAGTAAAATTGGGAA 59.995 43.478 0.00 0.00 0.00 3.97
2454 2503 4.500035 GCCGTGAACAGTAAAATTGGGAAA 60.500 41.667 0.00 0.00 0.00 3.13
2455 2504 5.593010 CCGTGAACAGTAAAATTGGGAAAA 58.407 37.500 0.00 0.00 0.00 2.29
2456 2505 6.043411 CCGTGAACAGTAAAATTGGGAAAAA 58.957 36.000 0.00 0.00 0.00 1.94
2504 2553 7.650834 TTTAAGGAATGTTTAAAGTGCATGC 57.349 32.000 11.82 11.82 0.00 4.06
2505 2554 4.870123 AGGAATGTTTAAAGTGCATGCA 57.130 36.364 18.46 18.46 0.00 3.96
2506 2555 5.212532 AGGAATGTTTAAAGTGCATGCAA 57.787 34.783 24.58 3.23 0.00 4.08
2507 2556 4.990426 AGGAATGTTTAAAGTGCATGCAAC 59.010 37.500 24.58 16.35 0.00 4.17
2508 2557 4.143347 GGAATGTTTAAAGTGCATGCAACG 60.143 41.667 24.58 0.00 0.00 4.10
2509 2558 3.428746 TGTTTAAAGTGCATGCAACGT 57.571 38.095 24.58 12.60 0.00 3.99
2510 2559 3.775202 TGTTTAAAGTGCATGCAACGTT 58.225 36.364 24.58 20.92 0.00 3.99
2511 2560 4.177026 TGTTTAAAGTGCATGCAACGTTT 58.823 34.783 24.58 22.39 0.00 3.60
2512 2561 4.627467 TGTTTAAAGTGCATGCAACGTTTT 59.373 33.333 24.58 20.62 0.00 2.43
2513 2562 5.805486 TGTTTAAAGTGCATGCAACGTTTTA 59.195 32.000 24.58 19.67 0.00 1.52
2514 2563 6.477033 TGTTTAAAGTGCATGCAACGTTTTAT 59.523 30.769 24.58 5.64 0.00 1.40
2515 2564 6.683090 TTAAAGTGCATGCAACGTTTTATC 57.317 33.333 24.58 6.49 0.00 1.75
2516 2565 3.913548 AGTGCATGCAACGTTTTATCA 57.086 38.095 24.58 0.00 0.00 2.15
2517 2566 4.439305 AGTGCATGCAACGTTTTATCAT 57.561 36.364 24.58 0.00 0.00 2.45
2518 2567 4.168014 AGTGCATGCAACGTTTTATCATG 58.832 39.130 24.58 17.95 37.98 3.07
2519 2568 4.082841 AGTGCATGCAACGTTTTATCATGA 60.083 37.500 24.58 0.00 37.34 3.07
2520 2569 4.620609 GTGCATGCAACGTTTTATCATGAA 59.379 37.500 24.58 15.25 37.34 2.57
2521 2570 5.118357 GTGCATGCAACGTTTTATCATGAAA 59.882 36.000 24.58 13.07 37.34 2.69
2522 2571 5.868258 TGCATGCAACGTTTTATCATGAAAT 59.132 32.000 20.30 0.00 37.34 2.17
2523 2572 6.034790 TGCATGCAACGTTTTATCATGAAATC 59.965 34.615 20.30 12.05 37.34 2.17
2524 2573 6.034790 GCATGCAACGTTTTATCATGAAATCA 59.965 34.615 22.83 0.00 37.34 2.57
2525 2574 6.926280 TGCAACGTTTTATCATGAAATCAC 57.074 33.333 0.00 0.00 0.00 3.06
2526 2575 6.442112 TGCAACGTTTTATCATGAAATCACA 58.558 32.000 0.00 0.00 0.00 3.58
2527 2576 7.089538 TGCAACGTTTTATCATGAAATCACAT 58.910 30.769 0.00 0.00 0.00 3.21
2528 2577 7.598118 TGCAACGTTTTATCATGAAATCACATT 59.402 29.630 0.00 0.00 0.00 2.71
2529 2578 7.894247 GCAACGTTTTATCATGAAATCACATTG 59.106 33.333 0.00 1.46 0.00 2.82
2530 2579 8.374728 CAACGTTTTATCATGAAATCACATTGG 58.625 33.333 0.00 0.00 0.00 3.16
2531 2580 7.601856 ACGTTTTATCATGAAATCACATTGGT 58.398 30.769 0.00 0.00 0.00 3.67
2532 2581 7.541783 ACGTTTTATCATGAAATCACATTGGTG 59.458 33.333 0.00 0.00 46.66 4.17
2533 2582 7.009448 CGTTTTATCATGAAATCACATTGGTGG 59.991 37.037 0.00 0.00 45.32 4.61
2534 2583 7.715266 TTTATCATGAAATCACATTGGTGGA 57.285 32.000 0.00 0.00 45.32 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 4.860352 CACAGAACACACATTGCATTATGG 59.140 41.667 3.53 0.00 0.00 2.74
45 47 4.136796 CTCATTTTCCTGGTCACACAGAA 58.863 43.478 0.00 0.00 40.97 3.02
58 60 2.291741 GTGATCCGCCATCTCATTTTCC 59.708 50.000 0.00 0.00 31.92 3.13
69 71 1.136891 CTAGTGTGATGTGATCCGCCA 59.863 52.381 0.00 0.00 0.00 5.69
85 87 2.646121 GGCAAAACAGCAGCCTAGT 58.354 52.632 0.00 0.00 44.92 2.57
124 126 1.573108 TTCTCCTAGTGCCTCCTTGG 58.427 55.000 0.00 0.00 39.35 3.61
133 135 4.346418 ACCTCTATTGCCATTCTCCTAGTG 59.654 45.833 0.00 0.00 0.00 2.74
137 139 3.137360 GGAACCTCTATTGCCATTCTCCT 59.863 47.826 0.00 0.00 0.00 3.69
152 154 3.876589 TTGCAGCCGACGGAACCTC 62.877 63.158 20.50 0.00 0.00 3.85
153 155 3.936203 TTGCAGCCGACGGAACCT 61.936 61.111 20.50 1.67 0.00 3.50
156 158 1.169661 AATTGTTGCAGCCGACGGAA 61.170 50.000 20.50 0.45 0.00 4.30
172 174 1.014804 TGGCCCACCATTCCCTAATT 58.985 50.000 0.00 0.00 42.67 1.40
196 198 2.067932 TTGTCCCCCTGCCTTCACAG 62.068 60.000 0.00 0.00 37.42 3.66
226 228 3.488047 CCGCTAATGTGATTTGCTCCTTG 60.488 47.826 0.00 0.00 38.55 3.61
241 243 1.949525 CAAGCAATGTAGGCCGCTAAT 59.050 47.619 0.00 0.00 33.45 1.73
250 252 4.264253 TCCAGATGTTCCAAGCAATGTAG 58.736 43.478 0.00 0.00 0.00 2.74
253 255 2.426024 CCTCCAGATGTTCCAAGCAATG 59.574 50.000 0.00 0.00 0.00 2.82
259 261 2.986019 TCTTTCCCTCCAGATGTTCCAA 59.014 45.455 0.00 0.00 0.00 3.53
273 275 7.698550 GCTCGAAAATTCTTCTATTTCTTTCCC 59.301 37.037 0.00 0.00 32.28 3.97
289 291 3.569701 TCAGCTCCTTTTGCTCGAAAATT 59.430 39.130 0.00 0.00 38.92 1.82
301 303 3.178540 AACCGGCGTCAGCTCCTTT 62.179 57.895 6.01 0.00 44.37 3.11
322 324 6.244552 TCATCTCTTATCATTCCAGCAAGT 57.755 37.500 0.00 0.00 0.00 3.16
338 340 3.096092 AGAAAACTCGAGCCTCATCTCT 58.904 45.455 13.61 2.31 0.00 3.10
370 372 2.398588 CCCTCTATTGTCACAGGGCTA 58.601 52.381 0.00 0.00 39.40 3.93
439 441 3.494398 GGGGCAAAAAGGAGGAAGAAAAC 60.494 47.826 0.00 0.00 0.00 2.43
443 445 1.158007 AGGGGCAAAAAGGAGGAAGA 58.842 50.000 0.00 0.00 0.00 2.87
444 446 1.260544 CAGGGGCAAAAAGGAGGAAG 58.739 55.000 0.00 0.00 0.00 3.46
448 450 1.051008 AAAGCAGGGGCAAAAAGGAG 58.949 50.000 0.00 0.00 44.61 3.69
449 451 1.506025 AAAAGCAGGGGCAAAAAGGA 58.494 45.000 0.00 0.00 44.61 3.36
450 452 1.948834 CAAAAAGCAGGGGCAAAAAGG 59.051 47.619 0.00 0.00 44.61 3.11
451 453 2.874086 CTCAAAAAGCAGGGGCAAAAAG 59.126 45.455 0.00 0.00 44.61 2.27
452 454 2.421248 CCTCAAAAAGCAGGGGCAAAAA 60.421 45.455 0.00 0.00 44.61 1.94
454 456 0.758123 CCTCAAAAAGCAGGGGCAAA 59.242 50.000 0.00 0.00 44.61 3.68
461 463 2.259511 GCGGCCCTCAAAAAGCAG 59.740 61.111 0.00 0.00 0.00 4.24
465 467 1.001393 CCTAGGCGGCCCTCAAAAA 60.001 57.895 17.02 0.00 41.75 1.94
484 486 3.259633 AACTCGGCCAGGCAGGAAG 62.260 63.158 15.19 6.24 41.22 3.46
534 537 6.000219 AGAAAGTCATTACAACATGCAGTCT 59.000 36.000 0.00 0.00 0.00 3.24
539 542 7.547370 AGAGTAGAGAAAGTCATTACAACATGC 59.453 37.037 0.00 0.00 0.00 4.06
597 600 8.193953 TGAGTTATATCACATGGCTATCTTGA 57.806 34.615 0.00 0.00 0.00 3.02
598 601 8.837788 TTGAGTTATATCACATGGCTATCTTG 57.162 34.615 0.00 0.00 0.00 3.02
599 602 9.851686 TTTTGAGTTATATCACATGGCTATCTT 57.148 29.630 0.00 0.00 0.00 2.40
600 603 9.277783 GTTTTGAGTTATATCACATGGCTATCT 57.722 33.333 0.00 0.00 0.00 1.98
601 604 9.056005 TGTTTTGAGTTATATCACATGGCTATC 57.944 33.333 0.00 0.00 0.00 2.08
602 605 8.978874 TGTTTTGAGTTATATCACATGGCTAT 57.021 30.769 0.00 0.00 0.00 2.97
603 606 8.800370 TTGTTTTGAGTTATATCACATGGCTA 57.200 30.769 0.00 0.00 0.00 3.93
604 607 7.701539 TTGTTTTGAGTTATATCACATGGCT 57.298 32.000 0.00 0.00 0.00 4.75
605 608 8.028938 ACTTTGTTTTGAGTTATATCACATGGC 58.971 33.333 0.00 0.00 0.00 4.40
606 609 9.559958 GACTTTGTTTTGAGTTATATCACATGG 57.440 33.333 0.00 0.00 0.00 3.66
609 612 9.337396 AGTGACTTTGTTTTGAGTTATATCACA 57.663 29.630 0.00 0.00 0.00 3.58
614 617 9.168451 TGTCAAGTGACTTTGTTTTGAGTTATA 57.832 29.630 12.43 0.00 44.99 0.98
615 618 8.050778 TGTCAAGTGACTTTGTTTTGAGTTAT 57.949 30.769 12.43 0.00 44.99 1.89
616 619 7.441890 TGTCAAGTGACTTTGTTTTGAGTTA 57.558 32.000 12.43 0.00 44.99 2.24
617 620 6.325919 TGTCAAGTGACTTTGTTTTGAGTT 57.674 33.333 12.43 0.00 44.99 3.01
618 621 5.957842 TGTCAAGTGACTTTGTTTTGAGT 57.042 34.783 12.43 0.00 44.99 3.41
619 622 8.909708 TTTATGTCAAGTGACTTTGTTTTGAG 57.090 30.769 12.43 0.00 44.99 3.02
620 623 9.868277 AATTTATGTCAAGTGACTTTGTTTTGA 57.132 25.926 12.43 0.00 44.99 2.69
649 652 8.237267 GCAGCATTTAGAAAAGTACAGTACATT 58.763 33.333 13.37 4.40 0.00 2.71
650 653 7.390440 TGCAGCATTTAGAAAAGTACAGTACAT 59.610 33.333 13.37 0.00 0.00 2.29
651 654 6.708502 TGCAGCATTTAGAAAAGTACAGTACA 59.291 34.615 13.37 0.00 0.00 2.90
652 655 7.129109 TGCAGCATTTAGAAAAGTACAGTAC 57.871 36.000 2.05 2.05 0.00 2.73
653 656 7.737972 TTGCAGCATTTAGAAAAGTACAGTA 57.262 32.000 0.00 0.00 0.00 2.74
654 657 6.633500 TTGCAGCATTTAGAAAAGTACAGT 57.367 33.333 0.00 0.00 0.00 3.55
655 658 7.113965 CAGTTTGCAGCATTTAGAAAAGTACAG 59.886 37.037 0.00 0.00 0.00 2.74
656 659 6.917477 CAGTTTGCAGCATTTAGAAAAGTACA 59.083 34.615 0.00 0.00 0.00 2.90
657 660 6.129088 GCAGTTTGCAGCATTTAGAAAAGTAC 60.129 38.462 0.00 0.00 44.26 2.73
658 661 5.920273 GCAGTTTGCAGCATTTAGAAAAGTA 59.080 36.000 0.00 0.00 44.26 2.24
659 662 4.746611 GCAGTTTGCAGCATTTAGAAAAGT 59.253 37.500 0.00 0.00 44.26 2.66
660 663 5.260027 GCAGTTTGCAGCATTTAGAAAAG 57.740 39.130 0.00 0.00 44.26 2.27
674 677 1.197036 GAGGGACGTTTAGCAGTTTGC 59.803 52.381 0.00 0.00 45.46 3.68
675 678 1.459592 CGAGGGACGTTTAGCAGTTTG 59.540 52.381 0.00 0.00 37.22 2.93
676 679 1.607251 CCGAGGGACGTTTAGCAGTTT 60.607 52.381 0.00 0.00 40.78 2.66
677 680 0.037605 CCGAGGGACGTTTAGCAGTT 60.038 55.000 0.00 0.00 40.78 3.16
678 681 1.183676 ACCGAGGGACGTTTAGCAGT 61.184 55.000 0.00 0.00 40.78 4.40
679 682 0.037605 AACCGAGGGACGTTTAGCAG 60.038 55.000 0.00 0.00 40.78 4.24
680 683 0.393820 AAACCGAGGGACGTTTAGCA 59.606 50.000 0.00 0.00 40.78 3.49
681 684 1.516161 AAAACCGAGGGACGTTTAGC 58.484 50.000 0.00 0.00 40.78 3.09
682 685 4.151157 CACTAAAAACCGAGGGACGTTTAG 59.849 45.833 0.00 0.00 40.53 1.85
683 686 4.057432 CACTAAAAACCGAGGGACGTTTA 58.943 43.478 0.00 0.00 40.78 2.01
684 687 2.874086 CACTAAAAACCGAGGGACGTTT 59.126 45.455 0.00 0.00 40.78 3.60
685 688 2.486918 CACTAAAAACCGAGGGACGTT 58.513 47.619 0.00 0.00 40.78 3.99
686 689 1.875157 GCACTAAAAACCGAGGGACGT 60.875 52.381 0.00 0.00 40.78 4.34
687 690 0.794473 GCACTAAAAACCGAGGGACG 59.206 55.000 0.00 0.00 42.18 4.79
688 691 1.162698 GGCACTAAAAACCGAGGGAC 58.837 55.000 0.00 0.00 0.00 4.46
689 692 1.061546 AGGCACTAAAAACCGAGGGA 58.938 50.000 0.00 0.00 36.02 4.20
690 693 2.773993 TAGGCACTAAAAACCGAGGG 57.226 50.000 0.00 0.00 38.39 4.30
700 703 8.506086 GGTATCCCAAAACCATTTAGGCACTAA 61.506 40.741 0.00 0.00 41.35 2.24
701 704 4.390129 TCCCAAAACCATTTAGGCACTA 57.610 40.909 0.00 0.00 43.14 2.74
702 705 3.252554 TCCCAAAACCATTTAGGCACT 57.747 42.857 0.00 0.00 43.14 4.40
703 706 4.142026 GGTATCCCAAAACCATTTAGGCAC 60.142 45.833 0.00 0.00 43.14 5.01
704 707 4.027437 GGTATCCCAAAACCATTTAGGCA 58.973 43.478 0.00 0.00 43.14 4.75
705 708 4.099419 CAGGTATCCCAAAACCATTTAGGC 59.901 45.833 0.00 0.00 43.14 3.93
706 709 5.269189 ACAGGTATCCCAAAACCATTTAGG 58.731 41.667 0.00 0.00 45.67 2.69
707 710 5.949354 TGACAGGTATCCCAAAACCATTTAG 59.051 40.000 0.00 0.00 38.30 1.85
708 711 5.893500 TGACAGGTATCCCAAAACCATTTA 58.106 37.500 0.00 0.00 38.30 1.40
709 712 4.746466 TGACAGGTATCCCAAAACCATTT 58.254 39.130 0.00 0.00 38.30 2.32
710 713 4.396357 TGACAGGTATCCCAAAACCATT 57.604 40.909 0.00 0.00 38.30 3.16
740 743 6.428385 AGCTTGTGTTTTGATATAGAGTGC 57.572 37.500 0.00 0.00 0.00 4.40
752 755 6.220201 ACAACAACAACTAAGCTTGTGTTTT 58.780 32.000 17.43 11.60 34.50 2.43
761 764 3.685836 ACGGAACAACAACAACTAAGC 57.314 42.857 0.00 0.00 0.00 3.09
883 886 9.370930 AGCATGGAAGGAAATTTCATAATATCA 57.629 29.630 19.49 7.91 34.64 2.15
884 887 9.635520 CAGCATGGAAGGAAATTTCATAATATC 57.364 33.333 19.49 7.06 34.64 1.63
914 926 0.472471 GACACAACACCCCTTCCTGA 59.528 55.000 0.00 0.00 0.00 3.86
930 943 6.650807 CCACTAAAAAGCATTACTGAGAGACA 59.349 38.462 0.00 0.00 0.00 3.41
958 971 1.063942 TCGCCAGTCTAGGATGGAGAA 60.064 52.381 15.86 3.35 41.63 2.87
991 1004 0.407528 TGTAAAGCCATGGAGCCCAA 59.592 50.000 18.40 0.00 36.95 4.12
1008 1021 8.854614 ATGAAGAAAGTAATCTAGCAACTTGT 57.145 30.769 5.35 0.00 33.85 3.16
1036 1049 6.878923 TGTGCTACAGCTTCTAAAACATACAT 59.121 34.615 2.44 0.00 42.66 2.29
1052 1065 2.440539 AGAACGAACCTGTGCTACAG 57.559 50.000 8.73 8.73 45.53 2.74
1053 1066 2.230508 CCTAGAACGAACCTGTGCTACA 59.769 50.000 0.00 0.00 0.00 2.74
1056 1069 1.629043 TCCTAGAACGAACCTGTGCT 58.371 50.000 0.00 0.00 0.00 4.40
1059 1072 5.245526 ACAGTTAATCCTAGAACGAACCTGT 59.754 40.000 0.00 0.00 0.00 4.00
1060 1073 5.721232 ACAGTTAATCCTAGAACGAACCTG 58.279 41.667 0.00 0.00 0.00 4.00
1081 1095 1.053424 AGAACCAAACCTAGGCGACA 58.947 50.000 9.30 0.00 0.00 4.35
1082 1096 1.804748 CAAGAACCAAACCTAGGCGAC 59.195 52.381 9.30 0.00 0.00 5.19
1094 1108 3.761897 CACCAGGTTAATCCAAGAACCA 58.238 45.455 6.57 0.00 46.41 3.67
1095 1109 2.492088 GCACCAGGTTAATCCAAGAACC 59.508 50.000 0.00 0.00 44.68 3.62
1101 1115 2.642311 TGAGAAGCACCAGGTTAATCCA 59.358 45.455 0.00 0.00 39.02 3.41
1170 1189 9.091220 AGAGAAAATAACTATAGGTTCCGCTAT 57.909 33.333 4.43 0.00 39.17 2.97
1193 1212 8.578308 CAAGATTGCAGTATTTAGAGAGAGAG 57.422 38.462 0.00 0.00 0.00 3.20
1229 1248 6.293845 GCTGCCGAATCAAGAAATCAGATTAT 60.294 38.462 0.00 0.00 32.51 1.28
1254 1273 5.335661 CCAAACCAAGAGAAAGGAAATACCG 60.336 44.000 0.00 0.00 44.74 4.02
1288 1311 5.701290 AGTCAGAACATGCACCTAAAGTTAC 59.299 40.000 0.00 0.00 0.00 2.50
1290 1313 4.718961 AGTCAGAACATGCACCTAAAGTT 58.281 39.130 0.00 0.00 0.00 2.66
1316 1339 4.252073 GCTGCCTATGATTAGACAGGATG 58.748 47.826 0.00 0.00 36.67 3.51
1330 1357 3.009033 TGTTCAAGTACCTTGCTGCCTAT 59.991 43.478 0.00 0.00 40.84 2.57
1331 1358 2.370519 TGTTCAAGTACCTTGCTGCCTA 59.629 45.455 0.00 0.00 40.84 3.93
1332 1359 1.142870 TGTTCAAGTACCTTGCTGCCT 59.857 47.619 0.00 0.00 40.84 4.75
1333 1360 1.266989 GTGTTCAAGTACCTTGCTGCC 59.733 52.381 0.00 0.00 40.84 4.85
1334 1361 1.266989 GGTGTTCAAGTACCTTGCTGC 59.733 52.381 0.00 0.00 40.84 5.25
1366 1398 3.996032 GCTTCTTGTAACAAGCTCATCG 58.004 45.455 0.18 0.00 41.61 3.84
1396 1428 6.959639 ATGTTTACTGAGTTCACACCAATT 57.040 33.333 0.00 0.00 0.00 2.32
1398 1430 7.867305 TTTATGTTTACTGAGTTCACACCAA 57.133 32.000 0.00 0.00 0.00 3.67
1464 1496 1.142060 TGGAAGAGAAAGTTTGCCCGA 59.858 47.619 0.00 0.00 0.00 5.14
1465 1497 1.604604 TGGAAGAGAAAGTTTGCCCG 58.395 50.000 0.00 0.00 0.00 6.13
1470 1502 5.532779 GTGGTCATCTTGGAAGAGAAAGTTT 59.467 40.000 0.00 0.00 38.66 2.66
1502 1534 7.528996 TGATCTGTGATTCAATTGAAGGTTT 57.471 32.000 24.17 9.19 37.48 3.27
1621 1657 4.066490 TCCTTATTTTCCTTCGAAACGCA 58.934 39.130 0.00 0.00 37.72 5.24
1708 1744 7.201741 GGCACCAGAGTCTTTAATCTTTAATCC 60.202 40.741 0.00 0.00 0.00 3.01
1726 1762 2.515398 CACAACCCTGGCACCAGA 59.485 61.111 18.44 0.00 46.30 3.86
1757 1800 2.499197 CGCTCTGCTCTATCTGGAGTA 58.501 52.381 0.00 0.00 35.89 2.59
1793 1836 5.212934 CCTTTTTAAGCTTTGACGTCCTTC 58.787 41.667 14.12 0.00 0.00 3.46
1800 1843 4.808895 CCCAACACCTTTTTAAGCTTTGAC 59.191 41.667 3.20 0.00 0.00 3.18
1808 1851 4.027437 AGCAGAACCCAACACCTTTTTAA 58.973 39.130 0.00 0.00 0.00 1.52
1814 1857 1.705186 ACATAGCAGAACCCAACACCT 59.295 47.619 0.00 0.00 0.00 4.00
1819 1862 7.432148 TCTCTATTTACATAGCAGAACCCAA 57.568 36.000 0.00 0.00 33.43 4.12
1836 1884 8.918116 TGAGCAACTCTATTACACATCTCTATT 58.082 33.333 0.00 0.00 0.00 1.73
1850 1898 5.365021 AGCCAACTAATGAGCAACTCTAT 57.635 39.130 0.00 0.00 0.00 1.98
1873 1921 8.279970 ACAATGCAACTCATACTAGCAATTTA 57.720 30.769 0.00 0.00 38.85 1.40
1916 1965 8.190784 CCTCAAAAGAAAACACAATTGTCTAGT 58.809 33.333 8.48 0.66 33.55 2.57
1920 1969 6.106003 ACCCTCAAAAGAAAACACAATTGTC 58.894 36.000 8.48 0.00 33.55 3.18
1923 1972 7.417456 GGAGTACCCTCAAAAGAAAACACAATT 60.417 37.037 0.00 0.00 39.64 2.32
1985 2034 1.472552 CCCATCTGAACGACCGCATTA 60.473 52.381 0.00 0.00 0.00 1.90
1986 2035 0.744414 CCCATCTGAACGACCGCATT 60.744 55.000 0.00 0.00 0.00 3.56
1994 2043 2.691409 ATGTGGTACCCATCTGAACG 57.309 50.000 10.07 0.00 35.28 3.95
2007 2056 7.232534 ACACAAATAAAGGTTGACATATGTGGT 59.767 33.333 14.43 0.00 38.89 4.16
2008 2057 7.601856 ACACAAATAAAGGTTGACATATGTGG 58.398 34.615 14.43 0.00 38.89 4.17
2009 2058 9.554724 GTACACAAATAAAGGTTGACATATGTG 57.445 33.333 14.43 0.00 40.05 3.21
2010 2059 8.736244 GGTACACAAATAAAGGTTGACATATGT 58.264 33.333 8.43 8.43 0.00 2.29
2076 2125 8.458843 CCTCCGTTCACAAATATAAGATGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
2083 2132 8.888579 ATACTTCCTCCGTTCACAAATATAAG 57.111 34.615 0.00 0.00 0.00 1.73
2087 2136 6.938030 ACAAATACTTCCTCCGTTCACAAATA 59.062 34.615 0.00 0.00 0.00 1.40
2097 2146 2.932614 CTGCTCACAAATACTTCCTCCG 59.067 50.000 0.00 0.00 0.00 4.63
2103 2152 7.573968 AAACTCTTTCTGCTCACAAATACTT 57.426 32.000 0.00 0.00 0.00 2.24
2106 2155 8.225603 AGAAAAACTCTTTCTGCTCACAAATA 57.774 30.769 0.00 0.00 37.37 1.40
2117 2166 9.178758 AGTGTTGACATAAGAAAAACTCTTTCT 57.821 29.630 0.00 0.00 41.97 2.52
2180 2229 7.645058 ACATCAAAAACCTCTCTCTCAAAAA 57.355 32.000 0.00 0.00 0.00 1.94
2181 2230 7.416664 CCAACATCAAAAACCTCTCTCTCAAAA 60.417 37.037 0.00 0.00 0.00 2.44
2182 2231 6.039717 CCAACATCAAAAACCTCTCTCTCAAA 59.960 38.462 0.00 0.00 0.00 2.69
2183 2232 5.532406 CCAACATCAAAAACCTCTCTCTCAA 59.468 40.000 0.00 0.00 0.00 3.02
2184 2233 5.065914 CCAACATCAAAAACCTCTCTCTCA 58.934 41.667 0.00 0.00 0.00 3.27
2185 2234 5.066593 ACCAACATCAAAAACCTCTCTCTC 58.933 41.667 0.00 0.00 0.00 3.20
2186 2235 5.053978 ACCAACATCAAAAACCTCTCTCT 57.946 39.130 0.00 0.00 0.00 3.10
2187 2236 5.998363 AGTACCAACATCAAAAACCTCTCTC 59.002 40.000 0.00 0.00 0.00 3.20
2188 2237 5.941788 AGTACCAACATCAAAAACCTCTCT 58.058 37.500 0.00 0.00 0.00 3.10
2189 2238 6.635030 AAGTACCAACATCAAAAACCTCTC 57.365 37.500 0.00 0.00 0.00 3.20
2190 2239 6.206829 GCTAAGTACCAACATCAAAAACCTCT 59.793 38.462 0.00 0.00 0.00 3.69
2191 2240 6.379386 GCTAAGTACCAACATCAAAAACCTC 58.621 40.000 0.00 0.00 0.00 3.85
2192 2241 5.243060 GGCTAAGTACCAACATCAAAAACCT 59.757 40.000 0.00 0.00 0.00 3.50
2193 2242 5.466819 GGCTAAGTACCAACATCAAAAACC 58.533 41.667 0.00 0.00 0.00 3.27
2194 2243 5.010213 TGGGCTAAGTACCAACATCAAAAAC 59.990 40.000 0.00 0.00 32.89 2.43
2220 2269 8.429237 ACCAGACCAAATACCAATTCAATTTA 57.571 30.769 0.00 0.00 0.00 1.40
2244 2293 1.223763 GGTCCTCCAATTCCCGGAC 59.776 63.158 0.73 7.66 44.00 4.79
2253 2302 1.550130 CCTACCGCTTGGTCCTCCAA 61.550 60.000 0.00 0.00 45.05 3.53
2254 2303 1.987855 CCTACCGCTTGGTCCTCCA 60.988 63.158 0.00 0.00 45.05 3.86
2255 2304 2.901042 CCTACCGCTTGGTCCTCC 59.099 66.667 0.00 0.00 45.05 4.30
2256 2305 2.180159 TTGCCTACCGCTTGGTCCTC 62.180 60.000 0.00 0.00 45.05 3.71
2257 2306 2.221299 TTGCCTACCGCTTGGTCCT 61.221 57.895 0.00 0.00 45.05 3.85
2258 2307 2.038837 GTTGCCTACCGCTTGGTCC 61.039 63.158 0.00 0.00 45.05 4.46
2259 2308 2.038837 GGTTGCCTACCGCTTGGTC 61.039 63.158 0.00 0.00 45.05 4.02
2273 2322 1.739562 GACTCGCCAGCAGAGGTTG 60.740 63.158 13.37 0.00 39.90 3.77
2274 2323 2.659610 GACTCGCCAGCAGAGGTT 59.340 61.111 13.37 0.00 39.90 3.50
2275 2324 3.386237 GGACTCGCCAGCAGAGGT 61.386 66.667 13.37 3.03 39.90 3.85
2276 2325 4.504916 CGGACTCGCCAGCAGAGG 62.505 72.222 13.37 0.00 39.90 3.69
2277 2326 4.504916 CCGGACTCGCCAGCAGAG 62.505 72.222 0.00 9.06 41.27 3.35
2279 2328 4.379243 AACCGGACTCGCCAGCAG 62.379 66.667 9.46 0.00 35.94 4.24
2280 2329 4.373116 GAACCGGACTCGCCAGCA 62.373 66.667 9.46 0.00 35.94 4.41
2281 2330 3.876589 TTGAACCGGACTCGCCAGC 62.877 63.158 9.46 0.00 35.94 4.85
2282 2331 1.738099 CTTGAACCGGACTCGCCAG 60.738 63.158 9.46 0.00 35.94 4.85
2283 2332 2.342279 CTTGAACCGGACTCGCCA 59.658 61.111 9.46 0.00 35.94 5.69
2284 2333 2.434359 CCTTGAACCGGACTCGCC 60.434 66.667 9.46 0.00 34.56 5.54
2285 2334 2.434359 CCCTTGAACCGGACTCGC 60.434 66.667 9.46 0.00 34.56 5.03
2286 2335 0.949105 CAACCCTTGAACCGGACTCG 60.949 60.000 9.46 0.00 0.00 4.18
2287 2336 1.235281 GCAACCCTTGAACCGGACTC 61.235 60.000 9.46 4.67 0.00 3.36
2288 2337 1.228154 GCAACCCTTGAACCGGACT 60.228 57.895 9.46 0.00 0.00 3.85
2289 2338 1.515521 CTGCAACCCTTGAACCGGAC 61.516 60.000 9.46 1.77 0.00 4.79
2290 2339 1.228124 CTGCAACCCTTGAACCGGA 60.228 57.895 9.46 0.00 0.00 5.14
2291 2340 1.228124 TCTGCAACCCTTGAACCGG 60.228 57.895 0.00 0.00 0.00 5.28
2292 2341 1.856265 GCTCTGCAACCCTTGAACCG 61.856 60.000 0.00 0.00 0.00 4.44
2293 2342 1.856265 CGCTCTGCAACCCTTGAACC 61.856 60.000 0.00 0.00 0.00 3.62
2294 2343 1.576421 CGCTCTGCAACCCTTGAAC 59.424 57.895 0.00 0.00 0.00 3.18
2295 2344 1.600636 CCGCTCTGCAACCCTTGAA 60.601 57.895 0.00 0.00 0.00 2.69
2296 2345 2.032528 CCGCTCTGCAACCCTTGA 59.967 61.111 0.00 0.00 0.00 3.02
2297 2346 3.058160 CCCGCTCTGCAACCCTTG 61.058 66.667 0.00 0.00 0.00 3.61
2298 2347 3.249189 TCCCGCTCTGCAACCCTT 61.249 61.111 0.00 0.00 0.00 3.95
2299 2348 3.710722 CTCCCGCTCTGCAACCCT 61.711 66.667 0.00 0.00 0.00 4.34
2301 2350 3.984193 ATGCTCCCGCTCTGCAACC 62.984 63.158 0.00 0.00 40.24 3.77
2302 2351 2.437359 ATGCTCCCGCTCTGCAAC 60.437 61.111 0.00 0.00 40.24 4.17
2303 2352 2.124983 GATGCTCCCGCTCTGCAA 60.125 61.111 0.00 0.00 40.24 4.08
2304 2353 4.519437 CGATGCTCCCGCTCTGCA 62.519 66.667 0.00 0.00 41.13 4.41
2305 2354 3.138930 TACGATGCTCCCGCTCTGC 62.139 63.158 0.00 0.00 36.97 4.26
2306 2355 1.007964 CTACGATGCTCCCGCTCTG 60.008 63.158 0.00 0.00 36.97 3.35
2307 2356 1.152943 TCTACGATGCTCCCGCTCT 60.153 57.895 0.00 0.00 36.97 4.09
2308 2357 1.008309 GTCTACGATGCTCCCGCTC 60.008 63.158 0.00 0.00 36.97 5.03
2309 2358 2.835705 CGTCTACGATGCTCCCGCT 61.836 63.158 0.00 0.00 43.02 5.52
2310 2359 2.353607 CGTCTACGATGCTCCCGC 60.354 66.667 0.00 0.00 43.02 6.13
2311 2360 3.417601 TCGTCTACGATGCTCCCG 58.582 61.111 0.14 0.00 44.22 5.14
2327 2376 7.881643 ATATCTTTGCATGATCGACTACTTC 57.118 36.000 0.00 0.00 0.00 3.01
2328 2377 8.797438 TCTATATCTTTGCATGATCGACTACTT 58.203 33.333 0.00 0.00 0.00 2.24
2329 2378 8.341892 TCTATATCTTTGCATGATCGACTACT 57.658 34.615 0.00 0.00 0.00 2.57
2330 2379 8.972262 TTCTATATCTTTGCATGATCGACTAC 57.028 34.615 0.00 0.00 0.00 2.73
2331 2380 9.631452 CTTTCTATATCTTTGCATGATCGACTA 57.369 33.333 0.00 0.00 0.00 2.59
2332 2381 8.147058 ACTTTCTATATCTTTGCATGATCGACT 58.853 33.333 0.00 0.00 0.00 4.18
2333 2382 8.304202 ACTTTCTATATCTTTGCATGATCGAC 57.696 34.615 0.00 0.00 0.00 4.20
2334 2383 9.981114 TTACTTTCTATATCTTTGCATGATCGA 57.019 29.630 0.00 0.00 0.00 3.59
2341 2390 9.719355 TGTCAACTTACTTTCTATATCTTTGCA 57.281 29.630 0.00 0.00 0.00 4.08
2342 2391 9.974750 GTGTCAACTTACTTTCTATATCTTTGC 57.025 33.333 0.00 0.00 0.00 3.68
2354 2403 9.063615 CCCTACTTTTATGTGTCAACTTACTTT 57.936 33.333 0.00 0.00 0.00 2.66
2355 2404 7.664318 CCCCTACTTTTATGTGTCAACTTACTT 59.336 37.037 0.00 0.00 0.00 2.24
2356 2405 7.016858 TCCCCTACTTTTATGTGTCAACTTACT 59.983 37.037 0.00 0.00 0.00 2.24
2357 2406 7.163441 TCCCCTACTTTTATGTGTCAACTTAC 58.837 38.462 0.00 0.00 0.00 2.34
2358 2407 7.236019 TCTCCCCTACTTTTATGTGTCAACTTA 59.764 37.037 0.00 0.00 0.00 2.24
2359 2408 6.043938 TCTCCCCTACTTTTATGTGTCAACTT 59.956 38.462 0.00 0.00 0.00 2.66
2360 2409 5.546499 TCTCCCCTACTTTTATGTGTCAACT 59.454 40.000 0.00 0.00 0.00 3.16
2361 2410 5.801380 TCTCCCCTACTTTTATGTGTCAAC 58.199 41.667 0.00 0.00 0.00 3.18
2362 2411 5.570844 GCTCTCCCCTACTTTTATGTGTCAA 60.571 44.000 0.00 0.00 0.00 3.18
2363 2412 4.081087 GCTCTCCCCTACTTTTATGTGTCA 60.081 45.833 0.00 0.00 0.00 3.58
2364 2413 4.443621 GCTCTCCCCTACTTTTATGTGTC 58.556 47.826 0.00 0.00 0.00 3.67
2365 2414 3.200165 GGCTCTCCCCTACTTTTATGTGT 59.800 47.826 0.00 0.00 0.00 3.72
2366 2415 3.741388 CGGCTCTCCCCTACTTTTATGTG 60.741 52.174 0.00 0.00 0.00 3.21
2367 2416 2.434702 CGGCTCTCCCCTACTTTTATGT 59.565 50.000 0.00 0.00 0.00 2.29
2368 2417 2.698797 TCGGCTCTCCCCTACTTTTATG 59.301 50.000 0.00 0.00 0.00 1.90
2369 2418 3.042059 TCGGCTCTCCCCTACTTTTAT 57.958 47.619 0.00 0.00 0.00 1.40
2370 2419 2.537633 TCGGCTCTCCCCTACTTTTA 57.462 50.000 0.00 0.00 0.00 1.52
2371 2420 1.652947 TTCGGCTCTCCCCTACTTTT 58.347 50.000 0.00 0.00 0.00 2.27
2372 2421 1.555533 CTTTCGGCTCTCCCCTACTTT 59.444 52.381 0.00 0.00 0.00 2.66
2373 2422 1.196012 CTTTCGGCTCTCCCCTACTT 58.804 55.000 0.00 0.00 0.00 2.24
2374 2423 0.041386 ACTTTCGGCTCTCCCCTACT 59.959 55.000 0.00 0.00 0.00 2.57
2375 2424 1.772836 TACTTTCGGCTCTCCCCTAC 58.227 55.000 0.00 0.00 0.00 3.18
2376 2425 2.537633 TTACTTTCGGCTCTCCCCTA 57.462 50.000 0.00 0.00 0.00 3.53
2377 2426 1.652947 TTTACTTTCGGCTCTCCCCT 58.347 50.000 0.00 0.00 0.00 4.79
2378 2427 2.484742 TTTTACTTTCGGCTCTCCCC 57.515 50.000 0.00 0.00 0.00 4.81
2379 2428 5.048294 TCAAAATTTTACTTTCGGCTCTCCC 60.048 40.000 2.44 0.00 0.00 4.30
2380 2429 6.009115 TCAAAATTTTACTTTCGGCTCTCC 57.991 37.500 2.44 0.00 0.00 3.71
2381 2430 8.520835 AATTCAAAATTTTACTTTCGGCTCTC 57.479 30.769 2.44 0.00 0.00 3.20
2382 2431 8.887036 AAATTCAAAATTTTACTTTCGGCTCT 57.113 26.923 2.44 0.00 0.00 4.09
2383 2432 8.978539 AGAAATTCAAAATTTTACTTTCGGCTC 58.021 29.630 17.42 4.60 0.00 4.70
2384 2433 8.887036 AGAAATTCAAAATTTTACTTTCGGCT 57.113 26.923 17.42 6.50 0.00 5.52
2385 2434 8.760569 TGAGAAATTCAAAATTTTACTTTCGGC 58.239 29.630 17.42 15.30 31.34 5.54
2387 2436 9.783425 GCTGAGAAATTCAAAATTTTACTTTCG 57.217 29.630 17.42 10.46 34.81 3.46
2418 2467 1.063649 CACGGCATGAGCATTGAGC 59.936 57.895 0.00 0.00 44.61 4.26
2419 2468 1.089112 TTCACGGCATGAGCATTGAG 58.911 50.000 0.00 0.00 44.61 3.02
2420 2469 0.804364 GTTCACGGCATGAGCATTGA 59.196 50.000 0.00 0.00 44.61 2.57
2421 2470 0.522626 TGTTCACGGCATGAGCATTG 59.477 50.000 0.00 0.00 42.98 2.82
2422 2471 0.806868 CTGTTCACGGCATGAGCATT 59.193 50.000 0.00 0.00 46.21 3.56
2423 2472 0.321919 ACTGTTCACGGCATGAGCAT 60.322 50.000 0.00 0.00 46.21 3.79
2424 2473 0.320050 TACTGTTCACGGCATGAGCA 59.680 50.000 0.00 0.00 45.36 4.26
2425 2474 1.438651 TTACTGTTCACGGCATGAGC 58.561 50.000 0.00 0.00 38.99 4.26
2426 2475 4.685169 ATTTTACTGTTCACGGCATGAG 57.315 40.909 0.00 0.00 38.99 2.90
2427 2476 4.320861 CCAATTTTACTGTTCACGGCATGA 60.321 41.667 0.00 0.00 34.65 3.07
2428 2477 3.919804 CCAATTTTACTGTTCACGGCATG 59.080 43.478 0.00 0.00 0.00 4.06
2429 2478 3.056891 CCCAATTTTACTGTTCACGGCAT 60.057 43.478 0.00 0.00 0.00 4.40
2430 2479 2.294791 CCCAATTTTACTGTTCACGGCA 59.705 45.455 0.00 0.00 0.00 5.69
2431 2480 2.554893 TCCCAATTTTACTGTTCACGGC 59.445 45.455 0.00 0.00 0.00 5.68
2432 2481 4.839668 TTCCCAATTTTACTGTTCACGG 57.160 40.909 0.00 0.00 0.00 4.94
2479 2528 7.384660 TGCATGCACTTTAAACATTCCTTAAAG 59.615 33.333 18.46 11.61 45.59 1.85
2480 2529 7.212976 TGCATGCACTTTAAACATTCCTTAAA 58.787 30.769 18.46 0.00 0.00 1.52
2481 2530 6.753180 TGCATGCACTTTAAACATTCCTTAA 58.247 32.000 18.46 0.00 0.00 1.85
2482 2531 6.338214 TGCATGCACTTTAAACATTCCTTA 57.662 33.333 18.46 0.00 0.00 2.69
2483 2532 5.212532 TGCATGCACTTTAAACATTCCTT 57.787 34.783 18.46 0.00 0.00 3.36
2484 2533 4.870123 TGCATGCACTTTAAACATTCCT 57.130 36.364 18.46 0.00 0.00 3.36
2485 2534 4.143347 CGTTGCATGCACTTTAAACATTCC 60.143 41.667 22.58 0.00 0.00 3.01
2486 2535 4.444056 ACGTTGCATGCACTTTAAACATTC 59.556 37.500 22.58 0.00 0.00 2.67
2487 2536 4.367450 ACGTTGCATGCACTTTAAACATT 58.633 34.783 22.58 1.54 0.00 2.71
2488 2537 3.976169 ACGTTGCATGCACTTTAAACAT 58.024 36.364 22.58 0.00 0.00 2.71
2489 2538 3.428746 ACGTTGCATGCACTTTAAACA 57.571 38.095 22.58 0.00 0.00 2.83
2490 2539 4.770351 AAACGTTGCATGCACTTTAAAC 57.230 36.364 22.58 13.93 0.00 2.01
2491 2540 6.697455 TGATAAAACGTTGCATGCACTTTAAA 59.303 30.769 22.58 0.52 0.00 1.52
2492 2541 6.209361 TGATAAAACGTTGCATGCACTTTAA 58.791 32.000 22.58 1.43 0.00 1.52
2493 2542 5.763088 TGATAAAACGTTGCATGCACTTTA 58.237 33.333 22.58 19.78 0.00 1.85
2494 2543 4.615949 TGATAAAACGTTGCATGCACTTT 58.384 34.783 22.58 18.37 0.00 2.66
2495 2544 4.235939 TGATAAAACGTTGCATGCACTT 57.764 36.364 22.58 9.28 0.00 3.16
2496 2545 3.913548 TGATAAAACGTTGCATGCACT 57.086 38.095 22.58 2.44 0.00 4.40
2497 2546 4.165036 TCATGATAAAACGTTGCATGCAC 58.835 39.130 22.58 14.60 37.01 4.57
2498 2547 4.431661 TCATGATAAAACGTTGCATGCA 57.568 36.364 18.46 18.46 37.01 3.96
2499 2548 5.760193 TTTCATGATAAAACGTTGCATGC 57.240 34.783 11.82 11.82 37.01 4.06
2500 2549 7.062022 TGTGATTTCATGATAAAACGTTGCATG 59.938 33.333 19.31 19.31 38.09 4.06
2501 2550 7.089538 TGTGATTTCATGATAAAACGTTGCAT 58.910 30.769 0.00 0.00 0.00 3.96
2502 2551 6.442112 TGTGATTTCATGATAAAACGTTGCA 58.558 32.000 0.00 0.00 0.00 4.08
2503 2552 6.926280 TGTGATTTCATGATAAAACGTTGC 57.074 33.333 0.00 0.00 0.00 4.17
2504 2553 8.374728 CCAATGTGATTTCATGATAAAACGTTG 58.625 33.333 18.97 18.97 34.57 4.10
2505 2554 8.087750 ACCAATGTGATTTCATGATAAAACGTT 58.912 29.630 0.00 0.00 0.00 3.99
2506 2555 7.541783 CACCAATGTGATTTCATGATAAAACGT 59.458 33.333 0.00 0.00 45.76 3.99
2507 2556 7.009448 CCACCAATGTGATTTCATGATAAAACG 59.991 37.037 0.00 0.00 45.76 3.60
2508 2557 8.034215 TCCACCAATGTGATTTCATGATAAAAC 58.966 33.333 0.00 0.00 45.76 2.43
2509 2558 8.131847 TCCACCAATGTGATTTCATGATAAAA 57.868 30.769 0.00 0.00 45.76 1.52
2510 2559 7.715266 TCCACCAATGTGATTTCATGATAAA 57.285 32.000 0.00 0.00 45.76 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.