>input_sequence_77044
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----------------------------------------------------ATGGCTTTACAAGTTGCTAGATTACTTT
CTTCATTTATGTATGTTTTAGAAGCTGTAGCACAGGTTC-GTTCTAGGATTAACTGTCGCCTAGGTTTGGTTCTTGGATT
AACCTGGTGCTTCTCACCTTCTGAAGTGAATGCTTGAGTCCTGTATAATTTCCA-----AAGAAAAAAATAGCGGAACCT
ATAGTTATTTTCTCTCTCTCTAAATACTGCAATCTTGCACTTCAGAAATAATCTGATTTCTTGATTCGGCAGCGGTATTT
CCTTTCTCTTGGTTTGGGAAAAAA----TAGTAACTTTAGGTGCATGTTCTGACTTCTCAT----CCTGTCTAATCATAG
G-----CAGCAAGGTACTTGAACACCTCTCCATGTCCCGATGAGCTTGTTACAAGAAGCTGCTCAAGAATTGGTGTGAAC
TCAGTAAACATAAATCACATCATGAAGTCAGCATCTGAGCGTCCAGCTACAGGGGTCGGGCAAACTTTCTCTTCCAAGAT
GACCACCAGTGGCAAACCTTCAATTGAATCACAGATCAAAGCGTAA----------------------------------
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>chr7A_1_TraesCS7A01G388400
CCGATCGCC-TGCAAGCAAGGGGATGGCCCCATAATGCAATGTGTGTTCTGTGTGACCAGGAAAATGAGATGGCGGATCA
CATCACACTAGGCTGCTGTTTTGCCAAAGAGGTCTGGATGCAGTTCCAAGGAGGCACTAGGAGAATGGCAATAGAGGTTC
CGTCGGCTGCAACAATTAGGGAATGGTGGGCCAGCCTCTGTGAAGGCAGGGGGACAAAGGAGAGGAACAAGGAGCAAATC
ACATTAGCGGCCTACATTGCTTGGAACATCTGGAGGGAAAGAAATAGAAGAATTTTCGAGCAAAAGGAGCTGACGCCGGT
TGCACTTGCTGGAATGATAAGAGATGAGGCTCGAGTTTTCTACGAGGCCACTAGCCCTGTGACAATAGAGGGCTGACCGC
TGGAGGAGGAAATTGTCTCCCCCCCAGCTCTTTTTTGTTGGTTTTCTTCCTCCTTTTTGCCCCTGCTTTTTGAGGGCCGC
CTAGGCTTCCTGCCT-GGCCGAGTTGGCGGCTGCCGGCAAGGCAATCTGCCTTGGCAGACTGCATGTTGTAATGACTTTC
TCTACTCTTCTTAAATGCAAAAGCAGAGCTCCTGCTGTTTCAAGATAGCCATGTGATATAACTCAAAACAAAGTCACTTG
ACATAAATTAAAATGTACTGTACTTTTCTAAATGCTGCAAACTGCTAAACGTCCCTCGGTTTTTAGTGCCTAAATGGTTT
TGGGATACCTGTCATTTTTAAAGCACTCTATATCAAAACACAAGCTTAGTTGTTGTTGTTCCGTTCAGTCTATCTGTCAA
ACTGAATAATATATAGCCCATGCTGCAGATATCTCTGTTTCTTTTTTCCACGCGATATTAGCAAATTGATGAAATTTCCT
CCATGTGATA---------TTATGAAATTTCCTTCCATGCTGGTTTCAGGAAGG-GGTGTTGTGTCTCTCAGTAATGCTT
TTTAGTGGAGTTCTCCATCCTAGACTGGCGATCCCCAATAACATTGGGCTCCATGGCTTTACAAGTTGCTAGATTACTTT
CTTCATTTATGTATGTTTTAGAAGCTGTAGCACAGGTTC-GTTCTAGGATTAACTGTCGCCTAGGTTTGGTTCTTGGATT
AACCTGGTGCTTCTCACCTTCTGAAGTGAATGCTTGAGTCCTGTATAATTTCCA-----AAGAAAAAAATAGCGGAACCT
ATAGTTATTTTCTCTCTCTCTAAATACTGCAATCTTGCACTTCAGAAATAATCTGATTTCTTGATTCGGCAGCGGTATTT
CCTTTCTCTTGGTTTGGGAAAAAA----TAGTAACTTTAGGTGCATGTTCTGACTTCTCAT----CCTGTCTAATCATAG
G-----CAGCAAGGTACTTGAACACCTCTCCATGTCCCGATGAGCTTGTTACAAGAAGCTGCTCAAGAATTGGTGTGAAC
TCAGTAAACATAAATCACATCATGAAGTCAGCATCTGAGCGTCCAGCTACAGGGGTCGGGCAAACTTTCTCTTCCAAGAT
GACCACCAGTGGCAAACCTTCAATTGAATCACAGATCAAAGCGTAATAATCATCAATCATATGCAGTTATAATTTTGTAG
GAAGTTGCTCACTTCCTCAAAAG---TT-TTTCTTTCTGTCCTACAGGAATGGAGATGCGTTTCGAAGGAAAATAAGGAT
TACTTCCAATGCATTTGTTGCTTTCGGCGTTCTGTATTGTGGCGCACTTATTCATAAACGTTTGGATTAAAGATTAAAGA
CTCTGGTGCCAGGGTTGTGGTGGA-------AACCCTCGTACTCCAGATAGAGCAGAGCGGGATGGAGTCATTATGAAGG
ACGTCAAAGCTTAAAAAGGTGTTGGG-----TTCTGCTATGTAAATAGAGATGTGTAATAGAGTTGCTCATTAGTTGGCT
TAAATTGCTAGTAT-GAGTTGCATTGTTAGTTCTTTATATGTCTACTAGACAATTGTGTTTTCTTTTGAGGGTACTCCTC
TGTTAAACAGAGGGAGTACCCTTTATAGTGTTATAATGCGGTCGTTCAGATGGGTACCACATATGTCAACCTTTATTTGT
GTACCCATATTTATATTGGATATTCCGTCTGTTTACAAAAAATTAAAACATCTTATATTTGTGAACGGAGGAAGTATTTG
TGAGCAGAAAGAGTTTTTCTTATGTCAACACTATTGTGTTAATGCTATAAAGTTTCTCTTTACTCTTTTTTTTGAGAGAG
AGGTTTTTGATGTTGGTACTTAGCCCAGTAAATTGAATTGGTATTTGGTCTGGTCCGGGAATTGGAGGACCAAGCGGTAG
GCAACCTCTGCTGGCGAGTCCGGTTCAAGGGTTGCAGAGCGGGAGCATCGTAGACGAAGTAGTCGATCATGCAAAGATAT
AGAAAGTAAGTTGACACATAAAAGTAGGGGAGAGCCGAAAGTAAAATTTTGAATTTCTCAGCTTGAGCTCAATGCTCATG
CCGTGAACAGTAAAATTGGGAAAAAATAGTCTGATTTATTTAACATACTTTAAGGAATGTTTAAAGTGCATGCAACGTTT
TATCATGAAATCACATTGGTGGA
>chr2D_1
CCGATCGCCTTGCAAGCAAGGGGATGGCCACATAATGCAATGTGTGCTCTGTGTGACCAAGAAAATGAGACGGCGGATCA
CATCACCCTAGGCTGCTGTTTTGCCAAAGAGGTCTGGATGCAGTTTCAAGGAGGTACTGGGAGAATGGCAATAAGGGCTC
CGTCGGCTGCAACCATTAGGGAATGGTGGACCAGCCTTTGTGAAGGCAGGGGGACAAAGGAGAGGAATAAGGAGCAAATC
ACGTTAGCGGCTTAGATTGCATGGAACATCTGGAAGGAAAGAAATAGAAGGATTTTCGAGCAGAAGGAGCTGACGCCGGT
TGCCCTTGCTGGAATGATACGAGATGAGGCTCGAGTTTTCTACGAGGCCACCAGCCCTGTGACCATCGAGGGCTGACCGC
TGGAGGAGGAAATTGTCTTCTTTCCAG--CTTTTTTGTTGTTTTCTTTCTCTTCTCTTGCCCTTGCCTTTTGAGGGCCGC
CAAGGTTTCCTGCCTTGGCCGAGTTGGCGGTCGTCGACAAGGCTCTCTGCCTTGGCCGACTACATGTTGTAATGACTTTC
TCTACCCTTCTTAAATGCAAAAGCAGAGCTCCTGCTGTT-----------------------------------------
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>chr7B_712
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-------------------------------------------------------------------------ATGGTTT
TGGGATAC-TGTCGTTTTTAAAACACTCTATGTCCAAACACAACCTTAGTTGTTATTGTTCCGTTCAGTCTATCTGTCAA
ACTGAATTA---ATAGCCCATGCTGCAGAAATCTCGGTTTCTTTTTTCCACGCGATATTGGCAAATTAATGAAACTTCCT
CCATGCAATATTATGAAACTTATGAAATTTCCTTCCATGCTGGTTCCAGGAAGGCGGTGTTGCGTCTCTCAGTGATGCTC
-TTAGTGGAGGTCTCCATCCTAGACTGGCGATCCCCAATAACAATGGGCTCCATGGCTTTGTAAGTTGATAGATTACTTG
CTTCATTTCTGTATGTTTTAGAAGACGTGGCCTAGGTTCAGTTCTAGGATTAACCCTCGCCTAGGTTCAGTTCTAGGATT
AACCTGGTGCTTCTCACCTTCTGAAGTGAATGCTTGAGTCCTGCATAATTTGCAAAAGAAAGAAAAAATTAGCGGAACCT
ATAGTTATTTTTTCTCTCTA-AAAAACTGTAATCTTCCACTTCAGAATTAATCTGATTTCTTGATTCGGCAGTGGTATTT
CCTTTCTCTTGGTTTGGCAAAAAATAAATATTTACTTTAGTTGCATGTTCTGACTTCTTATATATCCTGTCTAATCCACA
CGCAGACAGCAAGGTACTTGAACACCTCTCCATGTCCTCGTGAGCTTGTTACAAGAAGCTGCTCAAGGACTGGTGTGAAC
TCAGTAAACATAAATCACATCATGAAGCCAGCATCTGTGCGTCCAGCTACAGGGGCTGGGCGAACTTTCTCTTCCAAGAC
GACCACCAGTGGCGAACCTTCAGTTGAATCACAGATTAAAGCGTAATAATCATCAATCATATGCAGTTATAATTTTGTAG
GAAGTTGCTCGCTTCCTCAAAAGTTTTT-TTTCTTTCTGTCCTACAGGAATGGAGACGCGTTTCGAAGGAAAATAAGGAT
TACTTCCAATGCATTTGTTGCTTTCGGCGTTCTATATTGTGGCACACTTATCCATAAACGTTTAGATTAAAGATTAAAGA
CGCTGGTGCCAGGGTTGTGGTGGAAGCGCTGAACCCTCGAACTCCTGATAGAGCAGAGCAGGATGGAGTCATTATAAAGG
ACATCAAAGCGTAAAATGGTGCTGGGTGTGCTTCTGCATTGTATATAGAGATGTGTAGTAGAGTTGCTCATTAGTTGGCT
CAAATTGCTAGTAGGGAGTTGCATTGTTAGTTCTTTATGT-----CTACACGATTGTGTTTTCTTTTGAGGGTACTCCTC
TGTTAAACAGAGGGAGTACCCTTTATAGTGTTA--ATGCGGTTGTTCAGATGGGT----CATATGTCAACCTTTATTTGT
GTACCCATATTTATATTGGATATTCCCTCTGTTCACAAAAGAGTTAAACATTTTAGATTTGTGAATGGAGGGAGCATTTG
TGAGCGGAAAGAGTTTTT-TTATGTCAAGACCATTGTGTTAACACTATAAAGTTTCTATTTACTCTTAGCACCAC-----
---TTTTTGATGTTGGTACTTAGCCCAGGAAATTGAATTGGTATTTGGTCTGATC-------------------------
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>chr7D_712
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-------------------------------------------------------------------------ATGGTTT
TGGGATAC-TGTTGTTTTTAAAACACTCTATATCCAAACACAACCTTAATTGTTATTGTTTCGTTCAGTCTATCTGTCAA
ACTGAATAA---ATAGCCCATGCTGCAGAAATCTCTGTTTCTTTTTTCCATGCGATATTAGCAAATTGATGAAATCTCCT
CCATGCAATATTATGAAACTTATGAAATTTCCTTCCATGCTGGTTCCAGGAAGGCGGTGTTGCGTCTCTCAGTAATGCTC
-TTAGTGGAGGTCTCCATCCTAGACTGGCGATCCCCAATAACAATGGGCTCCATGGCTTTGTAAGTTGATAGATTACTTG
CTTTATTTCTGTATGTTTTAGAAGACGTCGCCTAGGTTCAGTTCTAGGATTAACCCTCGCCTAGGTTCAGTTCTAGGATT
AACCTGGTGCTTCTCACCTTCTGAAGTGAATGCTTGAGTCCTGCATAATTTGCAAAAGAAAGAAAAAATTAGCGGAACCT
ATAGTTATTTTTTCTTTCTA-AAAAACTGTAATCTTGAACTTCAGAATTAATCTGATTTCTTGGTTCGGCAGTGGTATTT
CCTTTCTCTTAGTTTGGGAAAAAAAAAT--TTTACTTTAGGTGCATGTTCTGACTTCTTAT----CCTGTCTAATCCACA
CGCAGACAGCAAGGTACTTGAACACCTCTCCATGTCCTCGTGAGCTTGTTACAAGAAGCTGCTCAAGGACTGGTGTGAAC
TCAGTAAACATAAATCACATCATGAAGTCAGCATCTGTGCGTCCAGCTACAGGGGCTGGGCGAACTTTCTCTTCCAAGAC
GACCACCAGTGACGAACCTTCAATTGAATCACAGATCAAAGCGTAATTATCATCAATCATATGCAGTTATAATTTTGTAG
GAAGTTGCTCGCTTCCTCAAAAGTTTTTTTTTCTTTCTGTCCTACAGGAATTGAGTCGCGTTTCGAAGGAAAATAAGGAT
TACTTCCAATGCATTTGTTGCTTTCGGCGTTCTGTATTGTGGCGCACTTATTCATAAACATTTAGATT-AAGATTAAAGA
CGCTGGTGCCAGGGTTGTGGTGGAAGCGCTGAACCCTCGAACTCCAGATAGAGCAGAGCGGGATGGAGTCATTATAAAGG
ACATCAAAGTGTAAAATGGTGCTGGGTGTGCTTCTGCATTGTATATAGAGATGTCTAGTGGAGTTGCTCATTAGTTGGCT
CAAATTGCTAGTAGG-AGTTGCATTGTTAGTTCTTTATGT-----CTACACGATTGTGTTTTCTTTTGAGGGCACTCCTC
TGTTAAACAGGGGGAGTACCCTTTATAGTGTTA--ACGCGGTTGTTCA--------------------------------
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>SNPs
-----------------------------S----------------S------------S----------S---------
------S--------------------------------------S--------S---S--------------SS--S--
-------------S---------------S-------S-----------------------------S------------
--S--------S--S-----S-------------S---------------S-----------S-----------------
---S---------------S-------------------------------S-----------S--S-------------
------------------S-SSS----SS-----------S---SS---SSSSS-S------S---S-------------
-S---S------------------------SS-S--S------SS-----------S----S------------------
-----S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------S----S--------S-----------S--------S----------S-------------------------
---------SSS-----------------S--------------------------------------------------
-----SS--------------------------------------S----------------S----------------S
S---------S--------------------------------S----------------SS------S----------S
--------S---------------SS--S--SS---------------------SS-----------SS-----S-----
-------------------------------------------S-------S----------------S-----------
-----------S-------SS---S----S-----------------S------------------------S-------
------------------------------S-S-------------------------S-----------------SSSS
S------------------------------------SSS---------------------------S-S----------
-------------------------------------S-----------------SS----S-----------------S
-------------S------------------------------------------------------------------
----------S---------------------------------------------S-----------------------
---------------------------------------------------------------S----------------
-S-------------------------------------S-----------------------------------S----
--S-------S-----S----S---------------SS----S-------------S----------------------
S------------S------------------------S-SSSSS---S--S----------------------------
---------------------------------SS-------S------------SSSS---------------------
--------------------------S------S------S-S-S------S---S---------S-----S--S-----
-----S------------S---------S--S----------SS-------------S---------SSSSSSSSSSSSS
SSS-------------------------S-----------------------S--SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_699
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---------------------------------------AACTGCTAAACGTCCCTCGG---------------------
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>reverse_2423
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----------------------AGTAGGGGAGAGCCGAAAGT--------------------------------------
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