Multiple sequence alignment - TraesCS7A01G378900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G378900 chr7A 100.000 2998 0 0 1 2998 554487106 554490103 0.000000e+00 5537
1 TraesCS7A01G378900 chr7A 77.134 328 65 8 2676 2998 554501073 554501395 6.600000e-42 182
2 TraesCS7A01G378900 chr7B 90.759 2175 122 32 876 2998 513767990 513770137 0.000000e+00 2830
3 TraesCS7A01G378900 chr7B 96.578 263 9 0 619 881 273301148 273301410 1.280000e-118 436
4 TraesCS7A01G378900 chr7B 95.385 260 7 4 365 623 513767743 513767998 2.780000e-110 409
5 TraesCS7A01G378900 chr7B 79.599 299 53 8 2690 2986 513956354 513956646 1.090000e-49 207
6 TraesCS7A01G378900 chr7B 92.086 139 11 0 234 372 513767564 513767702 2.360000e-46 196
7 TraesCS7A01G378900 chr7B 91.579 95 5 1 2078 2169 222691676 222691770 8.720000e-26 128
8 TraesCS7A01G378900 chr7D 95.032 946 32 6 876 1808 486104505 486105448 0.000000e+00 1472
9 TraesCS7A01G378900 chr7D 88.577 998 58 22 2048 2998 486105593 486106581 0.000000e+00 1160
10 TraesCS7A01G378900 chr7D 92.549 255 15 1 369 623 486104263 486104513 2.200000e-96 363
11 TraesCS7A01G378900 chr7D 89.412 170 13 1 1865 2034 486105445 486105609 3.030000e-50 209
12 TraesCS7A01G378900 chr7D 77.592 299 59 7 2690 2986 486167248 486167540 1.100000e-39 174
13 TraesCS7A01G378900 chr5B 97.692 260 6 0 622 881 374453592 374453333 5.900000e-122 448
14 TraesCS7A01G378900 chr5B 96.538 260 9 0 622 881 561318053 561317794 5.940000e-117 431
15 TraesCS7A01G378900 chr5B 96.198 263 10 0 619 881 686123314 686123576 5.940000e-117 431
16 TraesCS7A01G378900 chr4B 96.958 263 8 0 619 881 59051600 59051862 2.740000e-120 442
17 TraesCS7A01G378900 chr1B 96.958 263 8 0 619 881 640820011 640820273 2.740000e-120 442
18 TraesCS7A01G378900 chr1B 96.578 263 9 0 619 881 659848802 659849064 1.280000e-118 436
19 TraesCS7A01G378900 chr1B 96.250 80 3 0 2102 2181 109738165 109738086 6.740000e-27 132
20 TraesCS7A01G378900 chr2B 95.941 271 9 2 622 890 629120508 629120238 3.550000e-119 438
21 TraesCS7A01G378900 chr2B 96.935 261 7 1 622 881 559493553 559493293 1.280000e-118 436
22 TraesCS7A01G378900 chr2B 91.579 95 5 2 2078 2169 166858163 166858069 8.720000e-26 128
23 TraesCS7A01G378900 chr2B 91.579 95 5 2 2078 2169 166863602 166863508 8.720000e-26 128
24 TraesCS7A01G378900 chr2A 80.567 247 44 4 2742 2986 137564034 137564278 1.420000e-43 187
25 TraesCS7A01G378900 chr3A 96.703 91 2 1 2101 2190 685288882 685288972 1.860000e-32 150
26 TraesCS7A01G378900 chr3D 95.294 85 4 0 2092 2176 548393316 548393400 5.210000e-28 135
27 TraesCS7A01G378900 chr1D 96.250 80 3 0 2102 2181 68453806 68453727 6.740000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G378900 chr7A 554487106 554490103 2997 False 5537 5537 100.000000 1 2998 1 chr7A.!!$F1 2997
1 TraesCS7A01G378900 chr7B 513767564 513770137 2573 False 1145 2830 92.743333 234 2998 3 chr7B.!!$F4 2764
2 TraesCS7A01G378900 chr7D 486104263 486106581 2318 False 801 1472 91.392500 369 2998 4 chr7D.!!$F2 2629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 931 0.033796 TATTCGTGGACGGAGGGAGT 60.034 55.0 0.0 0.0 40.29 3.85 F
880 932 0.033796 ATTCGTGGACGGAGGGAGTA 60.034 55.0 0.0 0.0 40.29 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2055 0.179119 GAGCTGTGCAATTGCCCATC 60.179 55.0 26.94 17.51 41.18 3.51 R
2836 2953 0.836606 TGCAGGTGTCCTCAGTTTCA 59.163 50.0 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.530857 CCATCCGTCTGACCGCCC 62.531 72.222 1.55 0.00 0.00 6.13
18 19 4.530857 CATCCGTCTGACCGCCCC 62.531 72.222 1.55 0.00 0.00 5.80
27 28 2.766651 GACCGCCCCCTGGTGATA 60.767 66.667 0.00 0.00 45.51 2.15
28 29 3.087906 ACCGCCCCCTGGTGATAC 61.088 66.667 0.00 0.00 45.51 2.24
29 30 3.873812 CCGCCCCCTGGTGATACC 61.874 72.222 0.00 0.00 45.51 2.73
30 31 3.873812 CGCCCCCTGGTGATACCC 61.874 72.222 0.00 0.00 45.51 3.69
31 32 3.499029 GCCCCCTGGTGATACCCC 61.499 72.222 0.00 0.00 37.50 4.95
32 33 2.776963 CCCCCTGGTGATACCCCC 60.777 72.222 0.00 0.00 37.50 5.40
33 34 3.168528 CCCCTGGTGATACCCCCG 61.169 72.222 0.00 0.00 37.50 5.73
34 35 2.366435 CCCTGGTGATACCCCCGT 60.366 66.667 0.00 0.00 37.50 5.28
35 36 2.440817 CCCTGGTGATACCCCCGTC 61.441 68.421 0.00 0.00 37.50 4.79
36 37 2.440817 CCTGGTGATACCCCCGTCC 61.441 68.421 0.00 0.00 37.50 4.79
37 38 1.687840 CTGGTGATACCCCCGTCCA 60.688 63.158 0.00 0.00 37.50 4.02
38 39 1.229561 TGGTGATACCCCCGTCCAA 60.230 57.895 0.00 0.00 37.50 3.53
39 40 1.222661 GGTGATACCCCCGTCCAAC 59.777 63.158 0.00 0.00 30.04 3.77
40 41 1.222661 GTGATACCCCCGTCCAACC 59.777 63.158 0.00 0.00 0.00 3.77
41 42 1.081462 TGATACCCCCGTCCAACCT 59.919 57.895 0.00 0.00 0.00 3.50
42 43 0.339162 TGATACCCCCGTCCAACCTA 59.661 55.000 0.00 0.00 0.00 3.08
43 44 1.273724 TGATACCCCCGTCCAACCTAA 60.274 52.381 0.00 0.00 0.00 2.69
44 45 2.052468 GATACCCCCGTCCAACCTAAT 58.948 52.381 0.00 0.00 0.00 1.73
45 46 1.969713 TACCCCCGTCCAACCTAATT 58.030 50.000 0.00 0.00 0.00 1.40
46 47 0.622136 ACCCCCGTCCAACCTAATTC 59.378 55.000 0.00 0.00 0.00 2.17
47 48 0.463116 CCCCCGTCCAACCTAATTCG 60.463 60.000 0.00 0.00 0.00 3.34
48 49 0.463116 CCCCGTCCAACCTAATTCGG 60.463 60.000 0.00 0.00 38.05 4.30
49 50 1.093496 CCCGTCCAACCTAATTCGGC 61.093 60.000 0.00 0.00 37.17 5.54
50 51 1.093496 CCGTCCAACCTAATTCGGCC 61.093 60.000 0.00 0.00 0.00 6.13
51 52 1.426041 CGTCCAACCTAATTCGGCCG 61.426 60.000 22.12 22.12 0.00 6.13
52 53 0.392060 GTCCAACCTAATTCGGCCGT 60.392 55.000 27.15 8.80 0.00 5.68
53 54 0.108041 TCCAACCTAATTCGGCCGTC 60.108 55.000 27.15 0.00 0.00 4.79
54 55 1.426041 CCAACCTAATTCGGCCGTCG 61.426 60.000 27.15 9.78 40.90 5.12
55 56 1.153509 AACCTAATTCGGCCGTCGG 60.154 57.895 27.15 19.97 39.77 4.79
74 75 1.559831 GCTGATGGCCGCAAATTAAC 58.440 50.000 0.00 0.00 34.27 2.01
75 76 1.802508 GCTGATGGCCGCAAATTAACC 60.803 52.381 0.00 0.00 34.27 2.85
76 77 1.476085 CTGATGGCCGCAAATTAACCA 59.524 47.619 0.00 0.00 34.28 3.67
77 78 1.895798 TGATGGCCGCAAATTAACCAA 59.104 42.857 0.00 0.00 33.30 3.67
78 79 2.300152 TGATGGCCGCAAATTAACCAAA 59.700 40.909 0.00 0.00 33.30 3.28
79 80 2.447244 TGGCCGCAAATTAACCAAAG 57.553 45.000 0.00 0.00 0.00 2.77
80 81 1.001406 TGGCCGCAAATTAACCAAAGG 59.999 47.619 0.00 0.00 0.00 3.11
81 82 1.273886 GGCCGCAAATTAACCAAAGGA 59.726 47.619 0.00 0.00 0.00 3.36
82 83 2.289133 GGCCGCAAATTAACCAAAGGAA 60.289 45.455 0.00 0.00 0.00 3.36
83 84 3.394719 GCCGCAAATTAACCAAAGGAAA 58.605 40.909 0.00 0.00 0.00 3.13
84 85 3.810386 GCCGCAAATTAACCAAAGGAAAA 59.190 39.130 0.00 0.00 0.00 2.29
85 86 4.084066 GCCGCAAATTAACCAAAGGAAAAG 60.084 41.667 0.00 0.00 0.00 2.27
86 87 5.053811 CCGCAAATTAACCAAAGGAAAAGT 58.946 37.500 0.00 0.00 0.00 2.66
87 88 5.525745 CCGCAAATTAACCAAAGGAAAAGTT 59.474 36.000 0.00 0.00 0.00 2.66
88 89 6.418141 CGCAAATTAACCAAAGGAAAAGTTG 58.582 36.000 9.32 9.32 33.19 3.16
89 90 6.036626 CGCAAATTAACCAAAGGAAAAGTTGT 59.963 34.615 12.78 0.00 32.90 3.32
90 91 7.186128 GCAAATTAACCAAAGGAAAAGTTGTG 58.814 34.615 12.78 0.00 32.90 3.33
91 92 6.918892 AATTAACCAAAGGAAAAGTTGTGC 57.081 33.333 0.00 0.00 0.00 4.57
92 93 2.979814 ACCAAAGGAAAAGTTGTGCC 57.020 45.000 0.00 0.00 0.00 5.01
93 94 2.466846 ACCAAAGGAAAAGTTGTGCCT 58.533 42.857 0.00 0.00 0.00 4.75
94 95 3.637769 ACCAAAGGAAAAGTTGTGCCTA 58.362 40.909 0.00 0.00 0.00 3.93
95 96 3.383505 ACCAAAGGAAAAGTTGTGCCTAC 59.616 43.478 0.00 0.00 0.00 3.18
96 97 3.383185 CCAAAGGAAAAGTTGTGCCTACA 59.617 43.478 0.00 0.00 34.31 2.74
97 98 4.039124 CCAAAGGAAAAGTTGTGCCTACAT 59.961 41.667 0.00 0.00 36.53 2.29
98 99 5.222631 CAAAGGAAAAGTTGTGCCTACATC 58.777 41.667 0.00 0.00 36.53 3.06
99 100 3.421844 AGGAAAAGTTGTGCCTACATCC 58.578 45.455 0.00 0.00 36.53 3.51
100 101 3.153919 GGAAAAGTTGTGCCTACATCCA 58.846 45.455 0.00 0.00 36.53 3.41
101 102 3.572255 GGAAAAGTTGTGCCTACATCCAA 59.428 43.478 0.00 0.00 36.53 3.53
102 103 4.321230 GGAAAAGTTGTGCCTACATCCAAG 60.321 45.833 0.00 0.00 36.53 3.61
103 104 1.826385 AGTTGTGCCTACATCCAAGC 58.174 50.000 0.00 0.00 36.53 4.01
104 105 1.073763 AGTTGTGCCTACATCCAAGCA 59.926 47.619 0.00 0.00 36.53 3.91
107 108 1.302949 TGCCTACATCCAAGCACCC 59.697 57.895 0.00 0.00 0.00 4.61
108 109 1.302949 GCCTACATCCAAGCACCCA 59.697 57.895 0.00 0.00 0.00 4.51
109 110 0.106519 GCCTACATCCAAGCACCCAT 60.107 55.000 0.00 0.00 0.00 4.00
110 111 1.683943 CCTACATCCAAGCACCCATG 58.316 55.000 0.00 0.00 0.00 3.66
111 112 1.212688 CCTACATCCAAGCACCCATGA 59.787 52.381 0.00 0.00 0.00 3.07
112 113 2.292267 CTACATCCAAGCACCCATGAC 58.708 52.381 0.00 0.00 0.00 3.06
113 114 0.677731 ACATCCAAGCACCCATGACG 60.678 55.000 0.00 0.00 0.00 4.35
114 115 0.392863 CATCCAAGCACCCATGACGA 60.393 55.000 0.00 0.00 0.00 4.20
115 116 0.327924 ATCCAAGCACCCATGACGAA 59.672 50.000 0.00 0.00 0.00 3.85
116 117 0.605319 TCCAAGCACCCATGACGAAC 60.605 55.000 0.00 0.00 0.00 3.95
117 118 0.888736 CCAAGCACCCATGACGAACA 60.889 55.000 0.00 0.00 0.00 3.18
118 119 0.518636 CAAGCACCCATGACGAACAG 59.481 55.000 0.00 0.00 0.00 3.16
119 120 0.108585 AAGCACCCATGACGAACAGT 59.891 50.000 0.00 0.00 0.00 3.55
120 121 0.973632 AGCACCCATGACGAACAGTA 59.026 50.000 0.00 0.00 0.00 2.74
121 122 1.346395 AGCACCCATGACGAACAGTAA 59.654 47.619 0.00 0.00 0.00 2.24
122 123 2.147958 GCACCCATGACGAACAGTAAA 58.852 47.619 0.00 0.00 0.00 2.01
123 124 2.747446 GCACCCATGACGAACAGTAAAT 59.253 45.455 0.00 0.00 0.00 1.40
124 125 3.190535 GCACCCATGACGAACAGTAAATT 59.809 43.478 0.00 0.00 0.00 1.82
125 126 4.320935 GCACCCATGACGAACAGTAAATTT 60.321 41.667 0.00 0.00 0.00 1.82
126 127 5.106475 GCACCCATGACGAACAGTAAATTTA 60.106 40.000 0.00 0.00 0.00 1.40
127 128 6.404293 GCACCCATGACGAACAGTAAATTTAT 60.404 38.462 0.31 0.00 0.00 1.40
128 129 7.201661 GCACCCATGACGAACAGTAAATTTATA 60.202 37.037 0.31 0.00 0.00 0.98
129 130 8.670135 CACCCATGACGAACAGTAAATTTATAA 58.330 33.333 0.31 0.00 0.00 0.98
130 131 8.671028 ACCCATGACGAACAGTAAATTTATAAC 58.329 33.333 0.31 0.00 0.00 1.89
131 132 8.670135 CCCATGACGAACAGTAAATTTATAACA 58.330 33.333 0.31 0.00 0.00 2.41
169 170 7.459394 GTGAAACTTCATGGCATTGATTATG 57.541 36.000 0.00 0.00 39.73 1.90
170 171 7.259882 GTGAAACTTCATGGCATTGATTATGA 58.740 34.615 0.00 0.00 39.73 2.15
171 172 7.760794 GTGAAACTTCATGGCATTGATTATGAA 59.239 33.333 0.00 0.00 39.73 2.57
172 173 7.760794 TGAAACTTCATGGCATTGATTATGAAC 59.239 33.333 0.00 0.00 35.34 3.18
173 174 7.414222 AACTTCATGGCATTGATTATGAACT 57.586 32.000 0.00 0.00 35.34 3.01
174 175 8.523915 AACTTCATGGCATTGATTATGAACTA 57.476 30.769 0.00 0.00 35.34 2.24
175 176 8.523915 ACTTCATGGCATTGATTATGAACTAA 57.476 30.769 0.00 0.00 35.34 2.24
176 177 9.139734 ACTTCATGGCATTGATTATGAACTAAT 57.860 29.630 0.00 0.00 35.34 1.73
191 192 9.826574 TTATGAACTAATATCTTAGGCGTTTGT 57.173 29.630 3.23 0.00 38.97 2.83
193 194 9.826574 ATGAACTAATATCTTAGGCGTTTGTAA 57.173 29.630 3.23 0.00 38.97 2.41
194 195 9.656040 TGAACTAATATCTTAGGCGTTTGTAAA 57.344 29.630 3.23 0.00 38.97 2.01
196 197 9.662947 AACTAATATCTTAGGCGTTTGTAAAGT 57.337 29.630 3.23 0.00 38.97 2.66
197 198 9.662947 ACTAATATCTTAGGCGTTTGTAAAGTT 57.337 29.630 3.23 0.00 38.97 2.66
200 201 6.870971 ATCTTAGGCGTTTGTAAAGTTTGA 57.129 33.333 0.00 0.00 0.00 2.69
201 202 6.870971 TCTTAGGCGTTTGTAAAGTTTGAT 57.129 33.333 0.00 0.00 0.00 2.57
202 203 6.664515 TCTTAGGCGTTTGTAAAGTTTGATG 58.335 36.000 0.00 0.00 0.00 3.07
203 204 4.237349 AGGCGTTTGTAAAGTTTGATGG 57.763 40.909 0.00 0.00 0.00 3.51
204 205 3.634910 AGGCGTTTGTAAAGTTTGATGGT 59.365 39.130 0.00 0.00 0.00 3.55
205 206 3.978855 GGCGTTTGTAAAGTTTGATGGTC 59.021 43.478 0.00 0.00 0.00 4.02
206 207 4.498345 GGCGTTTGTAAAGTTTGATGGTCA 60.498 41.667 0.00 0.00 0.00 4.02
207 208 5.038033 GCGTTTGTAAAGTTTGATGGTCAA 58.962 37.500 0.00 0.00 34.03 3.18
208 209 5.517054 GCGTTTGTAAAGTTTGATGGTCAAA 59.483 36.000 0.00 1.24 43.37 2.69
209 210 6.200097 GCGTTTGTAAAGTTTGATGGTCAAAT 59.800 34.615 8.21 0.00 46.55 2.32
210 211 7.380065 GCGTTTGTAAAGTTTGATGGTCAAATA 59.620 33.333 8.21 0.00 46.55 1.40
211 212 9.239002 CGTTTGTAAAGTTTGATGGTCAAATAA 57.761 29.630 8.21 0.00 46.55 1.40
215 216 9.906660 TGTAAAGTTTGATGGTCAAATAACATC 57.093 29.630 8.21 0.00 46.55 3.06
216 217 9.906660 GTAAAGTTTGATGGTCAAATAACATCA 57.093 29.630 8.21 1.67 46.55 3.07
224 225 9.631257 TGATGGTCAAATAACATCATATGAACT 57.369 29.630 9.99 0.00 44.19 3.01
226 227 9.857656 ATGGTCAAATAACATCATATGAACTCT 57.142 29.630 9.99 0.00 0.00 3.24
263 264 1.620822 ATTCCCCTCAAACAGTGCAC 58.379 50.000 9.40 9.40 0.00 4.57
268 269 2.228822 CCCCTCAAACAGTGCACATAAC 59.771 50.000 21.04 0.00 0.00 1.89
300 301 4.038080 GCTGAAAACCGGCGGTGG 62.038 66.667 34.87 20.00 37.42 4.61
317 318 2.833943 GGTGGCTTGAGAAAATCCCAAT 59.166 45.455 0.00 0.00 0.00 3.16
623 675 8.794335 AGAAGACAAAACTTATGGAGTAATCC 57.206 34.615 1.18 1.18 37.72 3.01
624 676 7.829706 AGAAGACAAAACTTATGGAGTAATCCC 59.170 37.037 6.78 0.00 37.72 3.85
625 677 7.272144 AGACAAAACTTATGGAGTAATCCCT 57.728 36.000 6.78 0.00 37.72 4.20
626 678 7.339482 AGACAAAACTTATGGAGTAATCCCTC 58.661 38.462 6.78 0.00 37.72 4.30
632 684 2.039509 GGAGTAATCCCTCCGTCCG 58.960 63.158 0.00 0.00 41.58 4.79
633 685 1.363080 GAGTAATCCCTCCGTCCGC 59.637 63.158 0.00 0.00 0.00 5.54
634 686 2.027169 GTAATCCCTCCGTCCGCG 59.973 66.667 0.00 0.00 37.95 6.46
635 687 2.124193 TAATCCCTCCGTCCGCGA 60.124 61.111 8.23 0.00 41.33 5.87
636 688 1.753848 TAATCCCTCCGTCCGCGAA 60.754 57.895 8.23 0.00 41.33 4.70
637 689 1.111116 TAATCCCTCCGTCCGCGAAT 61.111 55.000 8.23 0.00 41.33 3.34
638 690 1.111116 AATCCCTCCGTCCGCGAATA 61.111 55.000 8.23 0.00 41.33 1.75
639 691 1.111116 ATCCCTCCGTCCGCGAATAA 61.111 55.000 8.23 0.00 41.33 1.40
640 692 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
641 693 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
642 694 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
643 695 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
644 696 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
645 697 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
646 698 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
647 699 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
648 700 2.855963 CGTCCGCGAATAAGTGTACATT 59.144 45.455 8.23 0.00 41.33 2.71
649 701 3.305094 CGTCCGCGAATAAGTGTACATTT 59.695 43.478 8.23 8.77 41.33 2.32
650 702 4.500117 CGTCCGCGAATAAGTGTACATTTA 59.500 41.667 8.23 12.58 41.33 1.40
651 703 5.331309 CGTCCGCGAATAAGTGTACATTTAG 60.331 44.000 8.23 4.70 41.33 1.85
652 704 4.505191 TCCGCGAATAAGTGTACATTTAGC 59.495 41.667 8.23 12.02 0.00 3.09
653 705 4.506654 CCGCGAATAAGTGTACATTTAGCT 59.493 41.667 8.23 6.20 0.00 3.32
654 706 5.006358 CCGCGAATAAGTGTACATTTAGCTT 59.994 40.000 8.23 8.54 0.00 3.74
655 707 6.456449 CCGCGAATAAGTGTACATTTAGCTTT 60.456 38.462 8.23 6.17 0.00 3.51
656 708 6.959311 CGCGAATAAGTGTACATTTAGCTTTT 59.041 34.615 15.04 5.86 0.00 2.27
657 709 8.111836 CGCGAATAAGTGTACATTTAGCTTTTA 58.888 33.333 15.04 0.00 0.00 1.52
658 710 9.931210 GCGAATAAGTGTACATTTAGCTTTTAT 57.069 29.630 15.04 0.00 0.00 1.40
694 746 7.823665 AGTTTTAAAACTTTGACCGACTTTCT 58.176 30.769 24.66 0.83 46.52 2.52
695 747 8.949177 AGTTTTAAAACTTTGACCGACTTTCTA 58.051 29.630 24.66 0.00 46.52 2.10
696 748 9.218359 GTTTTAAAACTTTGACCGACTTTCTAG 57.782 33.333 21.27 0.00 36.03 2.43
697 749 7.486802 TTAAAACTTTGACCGACTTTCTAGG 57.513 36.000 0.00 0.00 0.00 3.02
698 750 3.679824 ACTTTGACCGACTTTCTAGGG 57.320 47.619 0.00 0.00 0.00 3.53
699 751 3.236896 ACTTTGACCGACTTTCTAGGGA 58.763 45.455 0.00 0.00 0.00 4.20
700 752 3.644738 ACTTTGACCGACTTTCTAGGGAA 59.355 43.478 0.00 0.00 0.00 3.97
701 753 4.102054 ACTTTGACCGACTTTCTAGGGAAA 59.898 41.667 0.00 0.00 38.90 3.13
702 754 4.693042 TTGACCGACTTTCTAGGGAAAA 57.307 40.909 0.00 0.00 40.41 2.29
703 755 4.267349 TGACCGACTTTCTAGGGAAAAG 57.733 45.455 1.82 1.82 40.41 2.27
704 756 3.644738 TGACCGACTTTCTAGGGAAAAGT 59.355 43.478 7.56 7.56 40.41 2.66
705 757 4.834496 TGACCGACTTTCTAGGGAAAAGTA 59.166 41.667 7.76 0.00 40.41 2.24
706 758 5.047519 TGACCGACTTTCTAGGGAAAAGTAG 60.048 44.000 7.76 7.90 40.41 2.57
707 759 5.082425 ACCGACTTTCTAGGGAAAAGTAGA 58.918 41.667 13.67 0.00 40.41 2.59
708 760 5.541484 ACCGACTTTCTAGGGAAAAGTAGAA 59.459 40.000 13.67 0.00 40.41 2.10
709 761 6.100668 CCGACTTTCTAGGGAAAAGTAGAAG 58.899 44.000 13.67 5.61 40.41 2.85
710 762 5.577554 CGACTTTCTAGGGAAAAGTAGAAGC 59.422 44.000 7.76 0.00 40.41 3.86
711 763 6.435292 ACTTTCTAGGGAAAAGTAGAAGCA 57.565 37.500 6.32 0.00 40.41 3.91
712 764 7.021998 ACTTTCTAGGGAAAAGTAGAAGCAT 57.978 36.000 6.32 0.00 40.41 3.79
713 765 7.462590 ACTTTCTAGGGAAAAGTAGAAGCATT 58.537 34.615 6.32 0.00 40.41 3.56
714 766 7.945109 ACTTTCTAGGGAAAAGTAGAAGCATTT 59.055 33.333 6.32 0.00 40.41 2.32
715 767 9.449719 CTTTCTAGGGAAAAGTAGAAGCATTTA 57.550 33.333 0.00 0.00 40.41 1.40
716 768 9.975218 TTTCTAGGGAAAAGTAGAAGCATTTAT 57.025 29.630 0.00 0.00 38.35 1.40
717 769 8.964476 TCTAGGGAAAAGTAGAAGCATTTATG 57.036 34.615 0.00 0.00 0.00 1.90
718 770 7.993183 TCTAGGGAAAAGTAGAAGCATTTATGG 59.007 37.037 0.00 0.00 0.00 2.74
719 771 5.360999 AGGGAAAAGTAGAAGCATTTATGGC 59.639 40.000 0.00 0.00 0.00 4.40
720 772 5.127031 GGGAAAAGTAGAAGCATTTATGGCA 59.873 40.000 0.00 0.00 0.00 4.92
721 773 6.036470 GGAAAAGTAGAAGCATTTATGGCAC 58.964 40.000 0.00 0.00 0.00 5.01
722 774 6.127619 GGAAAAGTAGAAGCATTTATGGCACT 60.128 38.462 0.00 0.00 0.00 4.40
723 775 7.067008 GGAAAAGTAGAAGCATTTATGGCACTA 59.933 37.037 0.00 0.00 0.00 2.74
724 776 7.938140 AAAGTAGAAGCATTTATGGCACTAA 57.062 32.000 0.00 0.00 0.00 2.24
725 777 7.938140 AAGTAGAAGCATTTATGGCACTAAA 57.062 32.000 0.00 0.00 0.00 1.85
726 778 8.525290 AAGTAGAAGCATTTATGGCACTAAAT 57.475 30.769 0.00 0.00 32.76 1.40
727 779 8.525290 AGTAGAAGCATTTATGGCACTAAATT 57.475 30.769 10.31 1.75 30.68 1.82
728 780 9.627123 AGTAGAAGCATTTATGGCACTAAATTA 57.373 29.630 10.31 2.06 30.68 1.40
729 781 9.884465 GTAGAAGCATTTATGGCACTAAATTAG 57.116 33.333 0.00 0.00 30.68 1.73
730 782 8.525290 AGAAGCATTTATGGCACTAAATTAGT 57.475 30.769 0.00 0.00 40.28 2.24
731 783 9.627123 AGAAGCATTTATGGCACTAAATTAGTA 57.373 29.630 5.23 0.00 37.23 1.82
734 786 9.573166 AGCATTTATGGCACTAAATTAGTATCA 57.427 29.630 5.23 7.55 37.23 2.15
735 787 9.612620 GCATTTATGGCACTAAATTAGTATCAC 57.387 33.333 5.23 0.00 37.23 3.06
742 794 9.368416 TGGCACTAAATTAGTATCACTAGATCT 57.632 33.333 5.23 0.00 37.23 2.75
743 795 9.632807 GGCACTAAATTAGTATCACTAGATCTG 57.367 37.037 5.18 0.00 37.23 2.90
754 806 9.950496 AGTATCACTAGATCTGTTTTGAAATGT 57.050 29.630 5.18 0.00 35.67 2.71
757 809 9.950496 ATCACTAGATCTGTTTTGAAATGTACT 57.050 29.630 5.18 0.00 0.00 2.73
758 810 9.778741 TCACTAGATCTGTTTTGAAATGTACTT 57.221 29.630 5.18 0.00 0.00 2.24
785 837 9.311676 TGATAATATACCAATTTGATGCCATGT 57.688 29.630 0.00 0.00 0.00 3.21
789 841 6.982160 ATACCAATTTGATGCCATGTATGT 57.018 33.333 0.00 0.00 0.00 2.29
790 842 5.680594 ACCAATTTGATGCCATGTATGTT 57.319 34.783 0.00 0.00 0.00 2.71
791 843 6.788598 ACCAATTTGATGCCATGTATGTTA 57.211 33.333 0.00 0.00 0.00 2.41
792 844 6.572519 ACCAATTTGATGCCATGTATGTTAC 58.427 36.000 0.00 0.00 0.00 2.50
793 845 5.984926 CCAATTTGATGCCATGTATGTTACC 59.015 40.000 0.00 0.00 0.00 2.85
794 846 6.406737 CCAATTTGATGCCATGTATGTTACCA 60.407 38.462 0.00 0.00 0.00 3.25
795 847 5.574891 TTTGATGCCATGTATGTTACCAC 57.425 39.130 0.00 0.00 0.00 4.16
796 848 4.502105 TGATGCCATGTATGTTACCACT 57.498 40.909 0.00 0.00 0.00 4.00
797 849 5.622346 TGATGCCATGTATGTTACCACTA 57.378 39.130 0.00 0.00 0.00 2.74
798 850 6.186420 TGATGCCATGTATGTTACCACTAT 57.814 37.500 0.00 0.00 0.00 2.12
799 851 6.600388 TGATGCCATGTATGTTACCACTATT 58.400 36.000 0.00 0.00 0.00 1.73
800 852 7.059788 TGATGCCATGTATGTTACCACTATTT 58.940 34.615 0.00 0.00 0.00 1.40
801 853 7.559533 TGATGCCATGTATGTTACCACTATTTT 59.440 33.333 0.00 0.00 0.00 1.82
802 854 7.710676 TGCCATGTATGTTACCACTATTTTT 57.289 32.000 0.00 0.00 0.00 1.94
867 919 7.757097 AAAGCTAGATGTACACTTATTCGTG 57.243 36.000 0.00 0.00 40.67 4.35
868 920 5.833082 AGCTAGATGTACACTTATTCGTGG 58.167 41.667 0.00 0.00 39.19 4.94
869 921 5.593095 AGCTAGATGTACACTTATTCGTGGA 59.407 40.000 0.00 0.00 39.19 4.02
870 922 5.686397 GCTAGATGTACACTTATTCGTGGAC 59.314 44.000 0.00 0.00 46.62 4.02
873 925 3.492421 GTACACTTATTCGTGGACGGA 57.508 47.619 0.00 0.00 38.82 4.69
874 926 2.649331 ACACTTATTCGTGGACGGAG 57.351 50.000 0.00 0.00 39.19 4.63
875 927 1.203994 ACACTTATTCGTGGACGGAGG 59.796 52.381 0.00 0.00 39.19 4.30
876 928 0.822164 ACTTATTCGTGGACGGAGGG 59.178 55.000 0.00 0.00 40.29 4.30
877 929 1.108776 CTTATTCGTGGACGGAGGGA 58.891 55.000 0.00 0.00 40.29 4.20
878 930 1.067212 CTTATTCGTGGACGGAGGGAG 59.933 57.143 0.00 0.00 40.29 4.30
879 931 0.033796 TATTCGTGGACGGAGGGAGT 60.034 55.000 0.00 0.00 40.29 3.85
880 932 0.033796 ATTCGTGGACGGAGGGAGTA 60.034 55.000 0.00 0.00 40.29 2.59
881 933 0.251297 TTCGTGGACGGAGGGAGTAA 60.251 55.000 0.00 0.00 40.29 2.24
882 934 0.033796 TCGTGGACGGAGGGAGTAAT 60.034 55.000 0.00 0.00 40.29 1.89
883 935 0.384669 CGTGGACGGAGGGAGTAATC 59.615 60.000 0.00 0.00 35.37 1.75
888 940 2.622470 GGACGGAGGGAGTAATCTACAC 59.378 54.545 0.00 0.00 0.00 2.90
932 984 7.021196 TGTCGCAAAATCACTCTAAAAATAGC 58.979 34.615 0.00 0.00 0.00 2.97
934 986 6.091577 TCGCAAAATCACTCTAAAAATAGCGA 59.908 34.615 0.00 0.00 44.45 4.93
1020 1074 1.442526 GATCCATGAGTGGCGCCAAG 61.443 60.000 34.66 18.14 45.63 3.61
1062 1118 0.960364 ATAGCTTGGTGTGGCCGTTG 60.960 55.000 0.00 0.00 41.21 4.10
1082 1138 3.413327 TGCGTGGCTTTAAATAGACCAA 58.587 40.909 0.00 0.00 30.82 3.67
1128 1184 2.269241 CTCCCTCCCCGCTTTGTC 59.731 66.667 0.00 0.00 0.00 3.18
1214 1270 4.393062 ACTGCACATTAGTCTTCCATTTCG 59.607 41.667 0.00 0.00 0.00 3.46
1301 1357 4.010349 GGTTTGTATGAGAGGTTTCTGGG 58.990 47.826 0.00 0.00 32.53 4.45
1321 1377 4.196971 GGGTAGACGATGGCAGTAATTTT 58.803 43.478 0.00 0.00 0.00 1.82
1322 1378 4.035208 GGGTAGACGATGGCAGTAATTTTG 59.965 45.833 0.00 0.00 0.00 2.44
1323 1379 4.873827 GGTAGACGATGGCAGTAATTTTGA 59.126 41.667 0.00 0.00 0.00 2.69
1324 1380 5.527582 GGTAGACGATGGCAGTAATTTTGAT 59.472 40.000 0.00 0.00 0.00 2.57
1332 1388 8.533965 CGATGGCAGTAATTTTGATAACATTTG 58.466 33.333 0.00 0.00 0.00 2.32
1421 1477 2.497092 CGAGATTGCCGTCGTCGTG 61.497 63.158 0.71 0.00 35.01 4.35
1461 1517 3.045267 ATGGAGGAGCAGCTGCAGG 62.045 63.158 38.24 2.35 45.16 4.85
1521 1577 3.566210 ACCACCCCAACCTCCACG 61.566 66.667 0.00 0.00 0.00 4.94
1784 1846 1.070776 GTCCGCACGTTCTTGTTTCTC 60.071 52.381 0.00 0.00 0.00 2.87
1816 1883 1.898094 GTGGTGTGCAGTGCATGGA 60.898 57.895 22.87 5.68 41.91 3.41
1826 1893 2.611224 GCAGTGCATGGAAAGGGAAAAG 60.611 50.000 11.09 0.00 0.00 2.27
1827 1894 2.629617 CAGTGCATGGAAAGGGAAAAGT 59.370 45.455 0.00 0.00 0.00 2.66
1828 1895 2.629617 AGTGCATGGAAAGGGAAAAGTG 59.370 45.455 0.00 0.00 0.00 3.16
1829 1896 2.365293 GTGCATGGAAAGGGAAAAGTGT 59.635 45.455 0.00 0.00 0.00 3.55
1833 1900 4.511454 GCATGGAAAGGGAAAAGTGTTTTC 59.489 41.667 3.92 3.92 46.36 2.29
1861 1928 6.264528 TCTCTCCTTCTTTTTGGATCCTCTA 58.735 40.000 14.23 0.00 0.00 2.43
1940 2007 4.386867 TCGATTCTGTACCTGATGGAAC 57.613 45.455 0.00 0.00 37.04 3.62
1987 2054 2.277084 GTACATAACTGCCGGTTCAGG 58.723 52.381 12.92 0.00 39.17 3.86
1988 2055 0.035439 ACATAACTGCCGGTTCAGGG 60.035 55.000 12.92 3.34 39.17 4.45
2002 2069 0.971959 TCAGGGATGGGCAATTGCAC 60.972 55.000 30.32 28.29 46.69 4.57
2011 2078 1.457346 GGCAATTGCACAGCTCTAGT 58.543 50.000 30.32 0.00 44.36 2.57
2012 2079 2.632377 GGCAATTGCACAGCTCTAGTA 58.368 47.619 30.32 0.00 44.36 1.82
2013 2080 2.611292 GGCAATTGCACAGCTCTAGTAG 59.389 50.000 30.32 0.00 44.36 2.57
2015 2082 4.125703 GCAATTGCACAGCTCTAGTAGAT 58.874 43.478 25.36 0.00 41.59 1.98
2016 2083 4.210955 GCAATTGCACAGCTCTAGTAGATC 59.789 45.833 25.36 0.00 41.59 2.75
2018 2085 5.604758 ATTGCACAGCTCTAGTAGATCAA 57.395 39.130 0.00 0.17 0.00 2.57
2019 2086 5.405935 TTGCACAGCTCTAGTAGATCAAA 57.594 39.130 0.00 0.00 0.00 2.69
2020 2087 5.405935 TGCACAGCTCTAGTAGATCAAAA 57.594 39.130 0.00 0.00 0.00 2.44
2021 2088 5.793817 TGCACAGCTCTAGTAGATCAAAAA 58.206 37.500 0.00 0.00 0.00 1.94
2022 2089 5.871524 TGCACAGCTCTAGTAGATCAAAAAG 59.128 40.000 0.00 0.00 0.00 2.27
2023 2090 5.872070 GCACAGCTCTAGTAGATCAAAAAGT 59.128 40.000 0.00 0.00 0.00 2.66
2024 2091 6.370166 GCACAGCTCTAGTAGATCAAAAAGTT 59.630 38.462 0.00 0.00 0.00 2.66
2025 2092 7.095017 GCACAGCTCTAGTAGATCAAAAAGTTT 60.095 37.037 0.00 0.00 0.00 2.66
2026 2093 8.439286 CACAGCTCTAGTAGATCAAAAAGTTTC 58.561 37.037 0.00 0.00 0.00 2.78
2027 2094 8.150945 ACAGCTCTAGTAGATCAAAAAGTTTCA 58.849 33.333 0.00 0.00 0.00 2.69
2028 2095 8.655092 CAGCTCTAGTAGATCAAAAAGTTTCAG 58.345 37.037 0.00 0.00 0.00 3.02
2039 2106 9.922305 GATCAAAAAGTTTCAGAATATACCTCG 57.078 33.333 0.00 0.00 0.00 4.63
2040 2107 7.748847 TCAAAAAGTTTCAGAATATACCTCGC 58.251 34.615 0.00 0.00 0.00 5.03
2041 2108 6.679327 AAAAGTTTCAGAATATACCTCGCC 57.321 37.500 0.00 0.00 0.00 5.54
2042 2109 5.353394 AAGTTTCAGAATATACCTCGCCA 57.647 39.130 0.00 0.00 0.00 5.69
2043 2110 5.353394 AGTTTCAGAATATACCTCGCCAA 57.647 39.130 0.00 0.00 0.00 4.52
2044 2111 5.741011 AGTTTCAGAATATACCTCGCCAAA 58.259 37.500 0.00 0.00 0.00 3.28
2045 2112 6.177610 AGTTTCAGAATATACCTCGCCAAAA 58.822 36.000 0.00 0.00 0.00 2.44
2046 2113 6.657541 AGTTTCAGAATATACCTCGCCAAAAA 59.342 34.615 0.00 0.00 0.00 1.94
2178 2246 3.009723 CAACTCGGCCATATCAACTTGT 58.990 45.455 2.24 0.00 0.00 3.16
2206 2274 1.727062 AATCCTCCCGCAGAGATCAT 58.273 50.000 2.33 0.00 46.50 2.45
2232 2300 3.806521 CGCTTTCTACCATCATCCTTCTG 59.193 47.826 0.00 0.00 0.00 3.02
2233 2301 3.563390 GCTTTCTACCATCATCCTTCTGC 59.437 47.826 0.00 0.00 0.00 4.26
2240 2324 3.896888 ACCATCATCCTTCTGCAAAACAA 59.103 39.130 0.00 0.00 0.00 2.83
2330 2415 4.782019 TGGGACAAAGCATCATGTAAAC 57.218 40.909 0.00 0.00 31.92 2.01
2384 2471 0.459934 CCTAGCTCTGTGCAGTCTGC 60.460 60.000 18.32 18.32 45.94 4.26
2395 2482 1.134491 TGCAGTCTGCTCATCTGATGG 60.134 52.381 24.76 9.30 45.31 3.51
2396 2483 1.584175 CAGTCTGCTCATCTGATGGC 58.416 55.000 17.06 17.80 0.00 4.40
2402 2489 1.338960 TGCTCATCTGATGGCAACGAA 60.339 47.619 22.78 7.34 42.51 3.85
2452 2539 5.789643 AAACCAGAGCATAGCAAAGAAAA 57.210 34.783 0.00 0.00 0.00 2.29
2476 2563 2.607771 GCAACCAACAACATGCTACAGG 60.608 50.000 0.00 0.00 35.93 4.00
2490 2604 2.169769 GCTACAGGGCCACATAGTTGTA 59.830 50.000 6.18 2.60 33.76 2.41
2492 2606 1.559682 ACAGGGCCACATAGTTGTAGG 59.440 52.381 6.18 0.00 33.76 3.18
2533 2647 6.947376 AATACTGGTCTTTAGGTAACAGGT 57.053 37.500 0.00 0.00 41.41 4.00
2556 2670 7.996644 AGGTTAAATAACACTGGTCTTTTCAGA 59.003 33.333 5.74 0.00 37.92 3.27
2576 2693 7.962964 TCAGAACACTAAAATGTACTCAAGG 57.037 36.000 0.00 0.00 30.75 3.61
2577 2694 7.732025 TCAGAACACTAAAATGTACTCAAGGA 58.268 34.615 0.00 0.00 30.75 3.36
2578 2695 7.656137 TCAGAACACTAAAATGTACTCAAGGAC 59.344 37.037 0.00 0.00 30.75 3.85
2579 2696 7.441157 CAGAACACTAAAATGTACTCAAGGACA 59.559 37.037 0.00 0.00 30.75 4.02
2580 2697 7.990886 AGAACACTAAAATGTACTCAAGGACAA 59.009 33.333 0.00 0.00 30.75 3.18
2586 2703 5.422214 AATGTACTCAAGGACAAGGTAGG 57.578 43.478 0.00 0.00 0.00 3.18
2603 2720 7.228706 ACAAGGTAGGTGAAAGTTGAAACATAG 59.771 37.037 0.00 0.00 0.00 2.23
2661 2778 7.841915 TGACGTATCTCAAGAAAATGCATAA 57.158 32.000 0.00 0.00 0.00 1.90
2680 2797 6.039829 TGCATAACTACAAACATGTGTTTCCA 59.960 34.615 8.09 0.00 45.54 3.53
2717 2834 7.177498 TCAATCATGTGAACATATAGCGAAC 57.823 36.000 0.00 0.00 34.26 3.95
2802 2919 0.817634 TCCAAGCACCGTCCACTTTG 60.818 55.000 0.00 0.00 0.00 2.77
2836 2953 1.355720 ACACTTTAGAGGCCCATGCTT 59.644 47.619 0.00 0.00 37.74 3.91
2852 2969 1.490490 TGCTTGAAACTGAGGACACCT 59.510 47.619 0.00 0.00 36.03 4.00
2854 2971 1.876156 CTTGAAACTGAGGACACCTGC 59.124 52.381 0.00 0.00 31.76 4.85
2865 2982 3.891977 GAGGACACCTGCATCTGTCTATA 59.108 47.826 18.51 0.00 37.53 1.31
2880 2997 7.531857 TCTGTCTATAATCTCATTCACCTCC 57.468 40.000 0.00 0.00 0.00 4.30
2895 3012 1.628846 ACCTCCACCGCTGAAGTAAAT 59.371 47.619 0.00 0.00 0.00 1.40
2901 3018 3.911964 CCACCGCTGAAGTAAATTTTTCG 59.088 43.478 0.00 0.00 0.00 3.46
2906 3023 5.134640 CGCTGAAGTAAATTTTTCGTCGAA 58.865 37.500 2.90 2.90 0.00 3.71
2934 3051 1.072015 AGCAGCAAAGACTCAAGCTCT 59.928 47.619 0.00 0.00 34.61 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.530857 GGGCGGTCAGACGGATGG 62.531 72.222 12.18 0.00 0.00 3.51
1 2 4.530857 GGGGCGGTCAGACGGATG 62.531 72.222 12.18 0.00 0.00 3.51
9 10 3.627332 TATCACCAGGGGGCGGTCA 62.627 63.158 0.00 0.00 37.90 4.02
10 11 2.766651 TATCACCAGGGGGCGGTC 60.767 66.667 0.00 0.00 37.90 4.79
11 12 3.087906 GTATCACCAGGGGGCGGT 61.088 66.667 0.00 0.00 37.90 5.68
12 13 3.873812 GGTATCACCAGGGGGCGG 61.874 72.222 0.00 0.00 38.42 6.13
13 14 3.873812 GGGTATCACCAGGGGGCG 61.874 72.222 0.00 0.00 41.02 6.13
14 15 3.499029 GGGGTATCACCAGGGGGC 61.499 72.222 0.00 0.00 41.02 5.80
15 16 2.776963 GGGGGTATCACCAGGGGG 60.777 72.222 0.00 0.00 41.02 5.40
16 17 3.168528 CGGGGGTATCACCAGGGG 61.169 72.222 0.00 0.00 41.02 4.79
17 18 2.366435 ACGGGGGTATCACCAGGG 60.366 66.667 0.00 0.00 41.02 4.45
18 19 2.440817 GGACGGGGGTATCACCAGG 61.441 68.421 0.00 0.00 41.02 4.45
19 20 1.268992 TTGGACGGGGGTATCACCAG 61.269 60.000 0.00 0.00 41.02 4.00
20 21 1.229561 TTGGACGGGGGTATCACCA 60.230 57.895 0.00 0.00 41.02 4.17
21 22 1.222661 GTTGGACGGGGGTATCACC 59.777 63.158 0.00 0.00 37.60 4.02
22 23 1.222661 GGTTGGACGGGGGTATCAC 59.777 63.158 0.00 0.00 0.00 3.06
23 24 0.339162 TAGGTTGGACGGGGGTATCA 59.661 55.000 0.00 0.00 0.00 2.15
24 25 1.499368 TTAGGTTGGACGGGGGTATC 58.501 55.000 0.00 0.00 0.00 2.24
25 26 2.201523 ATTAGGTTGGACGGGGGTAT 57.798 50.000 0.00 0.00 0.00 2.73
26 27 1.839354 GAATTAGGTTGGACGGGGGTA 59.161 52.381 0.00 0.00 0.00 3.69
27 28 0.622136 GAATTAGGTTGGACGGGGGT 59.378 55.000 0.00 0.00 0.00 4.95
28 29 0.463116 CGAATTAGGTTGGACGGGGG 60.463 60.000 0.00 0.00 0.00 5.40
29 30 0.463116 CCGAATTAGGTTGGACGGGG 60.463 60.000 0.00 0.00 37.28 5.73
30 31 1.093496 GCCGAATTAGGTTGGACGGG 61.093 60.000 6.46 0.00 40.55 5.28
31 32 1.093496 GGCCGAATTAGGTTGGACGG 61.093 60.000 6.46 0.00 42.63 4.79
32 33 2.390427 GGCCGAATTAGGTTGGACG 58.610 57.895 6.46 0.00 0.00 4.79
33 34 0.392060 ACGGCCGAATTAGGTTGGAC 60.392 55.000 35.90 0.00 0.00 4.02
34 35 0.108041 GACGGCCGAATTAGGTTGGA 60.108 55.000 35.90 0.00 0.00 3.53
35 36 1.426041 CGACGGCCGAATTAGGTTGG 61.426 60.000 35.90 3.52 41.76 3.77
36 37 1.426041 CCGACGGCCGAATTAGGTTG 61.426 60.000 35.90 11.35 41.76 3.77
37 38 1.153509 CCGACGGCCGAATTAGGTT 60.154 57.895 35.90 6.14 41.76 3.50
38 39 2.497770 CCGACGGCCGAATTAGGT 59.502 61.111 35.90 7.12 41.76 3.08
39 40 2.965462 GCCGACGGCCGAATTAGG 60.965 66.667 35.90 25.30 44.06 2.69
55 56 1.559831 GTTAATTTGCGGCCATCAGC 58.440 50.000 2.24 0.00 42.60 4.26
56 57 1.476085 TGGTTAATTTGCGGCCATCAG 59.524 47.619 2.24 0.00 0.00 2.90
57 58 1.550327 TGGTTAATTTGCGGCCATCA 58.450 45.000 2.24 0.00 0.00 3.07
58 59 2.663826 TTGGTTAATTTGCGGCCATC 57.336 45.000 2.24 0.00 0.00 3.51
59 60 2.354604 CCTTTGGTTAATTTGCGGCCAT 60.355 45.455 2.24 0.00 0.00 4.40
60 61 1.001406 CCTTTGGTTAATTTGCGGCCA 59.999 47.619 2.24 0.00 0.00 5.36
61 62 1.273886 TCCTTTGGTTAATTTGCGGCC 59.726 47.619 0.00 0.00 0.00 6.13
62 63 2.734276 TCCTTTGGTTAATTTGCGGC 57.266 45.000 0.00 0.00 0.00 6.53
63 64 5.053811 ACTTTTCCTTTGGTTAATTTGCGG 58.946 37.500 0.00 0.00 0.00 5.69
64 65 6.036626 ACAACTTTTCCTTTGGTTAATTTGCG 59.963 34.615 0.00 0.00 0.00 4.85
65 66 7.186128 CACAACTTTTCCTTTGGTTAATTTGC 58.814 34.615 0.00 0.00 0.00 3.68
66 67 7.186128 GCACAACTTTTCCTTTGGTTAATTTG 58.814 34.615 0.00 0.00 0.00 2.32
67 68 6.317642 GGCACAACTTTTCCTTTGGTTAATTT 59.682 34.615 0.00 0.00 0.00 1.82
68 69 5.820423 GGCACAACTTTTCCTTTGGTTAATT 59.180 36.000 0.00 0.00 0.00 1.40
69 70 5.130311 AGGCACAACTTTTCCTTTGGTTAAT 59.870 36.000 0.00 0.00 0.00 1.40
70 71 4.468153 AGGCACAACTTTTCCTTTGGTTAA 59.532 37.500 0.00 0.00 0.00 2.01
71 72 4.027437 AGGCACAACTTTTCCTTTGGTTA 58.973 39.130 0.00 0.00 0.00 2.85
72 73 2.837591 AGGCACAACTTTTCCTTTGGTT 59.162 40.909 0.00 0.00 0.00 3.67
73 74 2.466846 AGGCACAACTTTTCCTTTGGT 58.533 42.857 0.00 0.00 0.00 3.67
74 75 3.383185 TGTAGGCACAACTTTTCCTTTGG 59.617 43.478 0.00 0.00 0.00 3.28
75 76 4.647424 TGTAGGCACAACTTTTCCTTTG 57.353 40.909 0.00 0.00 0.00 2.77
76 77 4.280929 GGATGTAGGCACAACTTTTCCTTT 59.719 41.667 0.00 0.00 38.42 3.11
77 78 3.826729 GGATGTAGGCACAACTTTTCCTT 59.173 43.478 0.00 0.00 38.42 3.36
78 79 3.181434 TGGATGTAGGCACAACTTTTCCT 60.181 43.478 0.00 0.00 38.42 3.36
79 80 3.153919 TGGATGTAGGCACAACTTTTCC 58.846 45.455 0.00 0.00 38.42 3.13
80 81 4.798574 CTTGGATGTAGGCACAACTTTTC 58.201 43.478 0.00 0.00 38.42 2.29
81 82 3.005791 GCTTGGATGTAGGCACAACTTTT 59.994 43.478 0.00 0.00 38.42 2.27
82 83 2.558359 GCTTGGATGTAGGCACAACTTT 59.442 45.455 0.00 0.00 38.42 2.66
83 84 2.162681 GCTTGGATGTAGGCACAACTT 58.837 47.619 0.00 0.00 38.42 2.66
84 85 1.073763 TGCTTGGATGTAGGCACAACT 59.926 47.619 0.00 0.00 38.42 3.16
85 86 1.533625 TGCTTGGATGTAGGCACAAC 58.466 50.000 0.00 0.00 38.42 3.32
89 90 1.302949 GGGTGCTTGGATGTAGGCA 59.697 57.895 0.00 0.00 0.00 4.75
90 91 0.106519 ATGGGTGCTTGGATGTAGGC 60.107 55.000 0.00 0.00 0.00 3.93
91 92 1.212688 TCATGGGTGCTTGGATGTAGG 59.787 52.381 0.00 0.00 0.00 3.18
92 93 2.292267 GTCATGGGTGCTTGGATGTAG 58.708 52.381 0.00 0.00 0.00 2.74
93 94 1.406751 CGTCATGGGTGCTTGGATGTA 60.407 52.381 0.00 0.00 0.00 2.29
94 95 0.677731 CGTCATGGGTGCTTGGATGT 60.678 55.000 0.00 0.00 0.00 3.06
95 96 0.392863 TCGTCATGGGTGCTTGGATG 60.393 55.000 0.00 0.00 0.00 3.51
96 97 0.327924 TTCGTCATGGGTGCTTGGAT 59.672 50.000 0.00 0.00 0.00 3.41
97 98 0.605319 GTTCGTCATGGGTGCTTGGA 60.605 55.000 0.00 0.00 0.00 3.53
98 99 0.888736 TGTTCGTCATGGGTGCTTGG 60.889 55.000 0.00 0.00 0.00 3.61
99 100 0.518636 CTGTTCGTCATGGGTGCTTG 59.481 55.000 0.00 0.00 0.00 4.01
100 101 0.108585 ACTGTTCGTCATGGGTGCTT 59.891 50.000 0.00 0.00 0.00 3.91
101 102 0.973632 TACTGTTCGTCATGGGTGCT 59.026 50.000 0.00 0.00 0.00 4.40
102 103 1.803334 TTACTGTTCGTCATGGGTGC 58.197 50.000 0.00 0.00 0.00 5.01
103 104 5.371115 AAATTTACTGTTCGTCATGGGTG 57.629 39.130 0.00 0.00 0.00 4.61
104 105 8.671028 GTTATAAATTTACTGTTCGTCATGGGT 58.329 33.333 0.00 0.00 0.00 4.51
105 106 8.670135 TGTTATAAATTTACTGTTCGTCATGGG 58.330 33.333 0.00 0.00 0.00 4.00
140 141 6.347696 TCAATGCCATGAAGTTTCACTTTTT 58.652 32.000 0.00 0.00 38.80 1.94
141 142 5.916318 TCAATGCCATGAAGTTTCACTTTT 58.084 33.333 0.00 0.00 38.80 2.27
142 143 5.534207 TCAATGCCATGAAGTTTCACTTT 57.466 34.783 0.00 0.00 38.80 2.66
143 144 5.733620 ATCAATGCCATGAAGTTTCACTT 57.266 34.783 0.00 0.00 41.95 3.16
144 145 5.733620 AATCAATGCCATGAAGTTTCACT 57.266 34.783 0.00 0.00 40.49 3.41
145 146 7.259882 TCATAATCAATGCCATGAAGTTTCAC 58.740 34.615 0.00 0.00 36.37 3.18
146 147 7.407393 TCATAATCAATGCCATGAAGTTTCA 57.593 32.000 0.00 0.00 37.26 2.69
147 148 7.977853 AGTTCATAATCAATGCCATGAAGTTTC 59.022 33.333 0.00 0.00 37.64 2.78
148 149 7.844009 AGTTCATAATCAATGCCATGAAGTTT 58.156 30.769 0.00 0.00 37.64 2.66
149 150 7.414222 AGTTCATAATCAATGCCATGAAGTT 57.586 32.000 0.00 0.00 37.64 2.66
150 151 8.523915 TTAGTTCATAATCAATGCCATGAAGT 57.476 30.769 0.00 12.66 41.55 3.01
165 166 9.826574 ACAAACGCCTAAGATATTAGTTCATAA 57.173 29.630 6.38 0.00 0.00 1.90
167 168 9.826574 TTACAAACGCCTAAGATATTAGTTCAT 57.173 29.630 6.38 0.00 0.00 2.57
168 169 9.656040 TTTACAAACGCCTAAGATATTAGTTCA 57.344 29.630 6.38 0.00 0.00 3.18
170 171 9.662947 ACTTTACAAACGCCTAAGATATTAGTT 57.337 29.630 6.38 0.00 0.00 2.24
171 172 9.662947 AACTTTACAAACGCCTAAGATATTAGT 57.337 29.630 6.38 0.00 0.00 2.24
174 175 9.005777 TCAAACTTTACAAACGCCTAAGATATT 57.994 29.630 0.00 0.00 0.00 1.28
175 176 8.556213 TCAAACTTTACAAACGCCTAAGATAT 57.444 30.769 0.00 0.00 0.00 1.63
176 177 7.966246 TCAAACTTTACAAACGCCTAAGATA 57.034 32.000 0.00 0.00 0.00 1.98
177 178 6.870971 TCAAACTTTACAAACGCCTAAGAT 57.129 33.333 0.00 0.00 0.00 2.40
178 179 6.293735 CCATCAAACTTTACAAACGCCTAAGA 60.294 38.462 0.00 0.00 0.00 2.10
179 180 5.856455 CCATCAAACTTTACAAACGCCTAAG 59.144 40.000 0.00 0.00 0.00 2.18
180 181 5.299782 ACCATCAAACTTTACAAACGCCTAA 59.700 36.000 0.00 0.00 0.00 2.69
181 182 4.822896 ACCATCAAACTTTACAAACGCCTA 59.177 37.500 0.00 0.00 0.00 3.93
182 183 3.634910 ACCATCAAACTTTACAAACGCCT 59.365 39.130 0.00 0.00 0.00 5.52
183 184 3.972403 ACCATCAAACTTTACAAACGCC 58.028 40.909 0.00 0.00 0.00 5.68
184 185 4.602995 TGACCATCAAACTTTACAAACGC 58.397 39.130 0.00 0.00 0.00 4.84
198 199 9.631257 AGTTCATATGATGTTATTTGACCATCA 57.369 29.630 6.17 4.25 46.33 3.07
200 201 9.857656 AGAGTTCATATGATGTTATTTGACCAT 57.142 29.630 6.17 0.00 0.00 3.55
224 225 9.016438 GGGGAATTTGTATTTAGTTTGTGTAGA 57.984 33.333 0.00 0.00 0.00 2.59
225 226 9.020731 AGGGGAATTTGTATTTAGTTTGTGTAG 57.979 33.333 0.00 0.00 0.00 2.74
226 227 8.943594 AGGGGAATTTGTATTTAGTTTGTGTA 57.056 30.769 0.00 0.00 0.00 2.90
227 228 7.507616 TGAGGGGAATTTGTATTTAGTTTGTGT 59.492 33.333 0.00 0.00 0.00 3.72
228 229 7.891561 TGAGGGGAATTTGTATTTAGTTTGTG 58.108 34.615 0.00 0.00 0.00 3.33
229 230 8.485578 TTGAGGGGAATTTGTATTTAGTTTGT 57.514 30.769 0.00 0.00 0.00 2.83
230 231 9.203421 GTTTGAGGGGAATTTGTATTTAGTTTG 57.797 33.333 0.00 0.00 0.00 2.93
231 232 8.929487 TGTTTGAGGGGAATTTGTATTTAGTTT 58.071 29.630 0.00 0.00 0.00 2.66
232 233 8.485578 TGTTTGAGGGGAATTTGTATTTAGTT 57.514 30.769 0.00 0.00 0.00 2.24
248 249 2.884012 TGTTATGTGCACTGTTTGAGGG 59.116 45.455 19.41 0.00 0.00 4.30
249 250 4.566545 TTGTTATGTGCACTGTTTGAGG 57.433 40.909 19.41 0.00 0.00 3.86
275 276 2.791158 CGCCGGTTTTCAGCAATATGTC 60.791 50.000 1.90 0.00 0.00 3.06
276 277 1.132262 CGCCGGTTTTCAGCAATATGT 59.868 47.619 1.90 0.00 0.00 2.29
284 285 4.038080 GCCACCGCCGGTTTTCAG 62.038 66.667 5.76 0.00 31.02 3.02
287 288 3.601685 CAAGCCACCGCCGGTTTT 61.602 61.111 5.76 0.00 31.02 2.43
300 301 4.035675 CGTCCTATTGGGATTTTCTCAAGC 59.964 45.833 0.00 0.00 40.66 4.01
317 318 3.505680 ACAAATTGCTCAAATGCGTCCTA 59.494 39.130 0.00 0.00 35.36 2.94
373 423 3.570125 CCTTTCCACAACTTTCTTCCTCC 59.430 47.826 0.00 0.00 0.00 4.30
378 428 4.405358 TGATTGCCTTTCCACAACTTTCTT 59.595 37.500 0.00 0.00 0.00 2.52
512 564 7.480760 TCCATATGCATATACTAGAAGCACA 57.519 36.000 18.70 0.00 38.12 4.57
558 610 7.335627 TGGTACATTCTACCTAATTGTTCTGG 58.664 38.462 0.00 0.00 38.39 3.86
623 675 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
624 676 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
625 677 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
626 678 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
627 679 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
628 680 4.852609 AAATGTACACTTATTCGCGGAC 57.147 40.909 6.13 0.00 0.00 4.79
629 681 4.505191 GCTAAATGTACACTTATTCGCGGA 59.495 41.667 6.13 0.00 0.00 5.54
630 682 4.506654 AGCTAAATGTACACTTATTCGCGG 59.493 41.667 6.13 0.00 0.00 6.46
631 683 5.637104 AGCTAAATGTACACTTATTCGCG 57.363 39.130 0.00 0.00 0.00 5.87
632 684 9.931210 ATAAAAGCTAAATGTACACTTATTCGC 57.069 29.630 0.00 0.00 0.00 4.70
670 722 9.218359 CTAGAAAGTCGGTCAAAGTTTTAAAAC 57.782 33.333 21.06 21.06 39.17 2.43
671 723 8.400186 CCTAGAAAGTCGGTCAAAGTTTTAAAA 58.600 33.333 0.00 0.00 0.00 1.52
672 724 7.012610 CCCTAGAAAGTCGGTCAAAGTTTTAAA 59.987 37.037 0.00 0.00 0.00 1.52
673 725 6.484308 CCCTAGAAAGTCGGTCAAAGTTTTAA 59.516 38.462 0.00 0.00 0.00 1.52
674 726 5.993441 CCCTAGAAAGTCGGTCAAAGTTTTA 59.007 40.000 0.00 0.00 0.00 1.52
675 727 4.820173 CCCTAGAAAGTCGGTCAAAGTTTT 59.180 41.667 0.00 0.00 0.00 2.43
676 728 4.102054 TCCCTAGAAAGTCGGTCAAAGTTT 59.898 41.667 0.00 0.00 0.00 2.66
677 729 3.644738 TCCCTAGAAAGTCGGTCAAAGTT 59.355 43.478 0.00 0.00 0.00 2.66
678 730 3.236896 TCCCTAGAAAGTCGGTCAAAGT 58.763 45.455 0.00 0.00 0.00 2.66
679 731 3.955650 TCCCTAGAAAGTCGGTCAAAG 57.044 47.619 0.00 0.00 0.00 2.77
680 732 4.693042 TTTCCCTAGAAAGTCGGTCAAA 57.307 40.909 0.00 0.00 37.07 2.69
681 733 4.102054 ACTTTTCCCTAGAAAGTCGGTCAA 59.898 41.667 2.94 0.00 42.06 3.18
682 734 3.644738 ACTTTTCCCTAGAAAGTCGGTCA 59.355 43.478 2.94 0.00 42.06 4.02
683 735 4.268797 ACTTTTCCCTAGAAAGTCGGTC 57.731 45.455 2.94 0.00 42.06 4.79
684 736 5.082425 TCTACTTTTCCCTAGAAAGTCGGT 58.918 41.667 10.42 0.00 43.98 4.69
685 737 5.656213 TCTACTTTTCCCTAGAAAGTCGG 57.344 43.478 10.42 6.68 43.98 4.79
686 738 5.577554 GCTTCTACTTTTCCCTAGAAAGTCG 59.422 44.000 10.42 6.16 43.98 4.18
687 739 6.465084 TGCTTCTACTTTTCCCTAGAAAGTC 58.535 40.000 10.42 0.00 43.98 3.01
688 740 6.435292 TGCTTCTACTTTTCCCTAGAAAGT 57.565 37.500 11.50 11.50 46.09 2.66
689 741 7.929941 AATGCTTCTACTTTTCCCTAGAAAG 57.070 36.000 0.00 0.00 42.78 2.62
690 742 9.975218 ATAAATGCTTCTACTTTTCCCTAGAAA 57.025 29.630 0.00 0.00 40.26 2.52
691 743 9.396022 CATAAATGCTTCTACTTTTCCCTAGAA 57.604 33.333 0.00 0.00 0.00 2.10
692 744 7.993183 CCATAAATGCTTCTACTTTTCCCTAGA 59.007 37.037 0.00 0.00 0.00 2.43
693 745 7.255277 GCCATAAATGCTTCTACTTTTCCCTAG 60.255 40.741 0.00 0.00 0.00 3.02
694 746 6.546034 GCCATAAATGCTTCTACTTTTCCCTA 59.454 38.462 0.00 0.00 0.00 3.53
695 747 5.360999 GCCATAAATGCTTCTACTTTTCCCT 59.639 40.000 0.00 0.00 0.00 4.20
696 748 5.127031 TGCCATAAATGCTTCTACTTTTCCC 59.873 40.000 0.00 0.00 0.00 3.97
697 749 6.036470 GTGCCATAAATGCTTCTACTTTTCC 58.964 40.000 0.00 0.00 0.00 3.13
698 750 6.856895 AGTGCCATAAATGCTTCTACTTTTC 58.143 36.000 0.00 0.00 0.00 2.29
699 751 6.840780 AGTGCCATAAATGCTTCTACTTTT 57.159 33.333 0.00 0.00 0.00 2.27
700 752 7.938140 TTAGTGCCATAAATGCTTCTACTTT 57.062 32.000 0.00 0.00 0.00 2.66
701 753 7.938140 TTTAGTGCCATAAATGCTTCTACTT 57.062 32.000 0.00 0.00 0.00 2.24
702 754 8.525290 AATTTAGTGCCATAAATGCTTCTACT 57.475 30.769 4.53 0.00 35.91 2.57
703 755 9.884465 CTAATTTAGTGCCATAAATGCTTCTAC 57.116 33.333 4.53 0.00 35.91 2.59
704 756 9.627123 ACTAATTTAGTGCCATAAATGCTTCTA 57.373 29.630 8.27 0.00 37.69 2.10
705 757 8.525290 ACTAATTTAGTGCCATAAATGCTTCT 57.475 30.769 8.27 0.00 37.69 2.85
708 760 9.573166 TGATACTAATTTAGTGCCATAAATGCT 57.427 29.630 17.47 0.00 39.81 3.79
709 761 9.612620 GTGATACTAATTTAGTGCCATAAATGC 57.387 33.333 17.47 1.68 39.81 3.56
716 768 9.368416 AGATCTAGTGATACTAATTTAGTGCCA 57.632 33.333 17.47 12.17 39.81 4.92
717 769 9.632807 CAGATCTAGTGATACTAATTTAGTGCC 57.367 37.037 17.47 10.11 39.81 5.01
728 780 9.950496 ACATTTCAAAACAGATCTAGTGATACT 57.050 29.630 0.00 0.00 32.19 2.12
731 783 9.950496 AGTACATTTCAAAACAGATCTAGTGAT 57.050 29.630 0.00 0.00 35.26 3.06
732 784 9.778741 AAGTACATTTCAAAACAGATCTAGTGA 57.221 29.630 0.00 0.00 0.00 3.41
759 811 9.311676 ACATGGCATCAAATTGGTATATTATCA 57.688 29.630 0.00 0.00 0.00 2.15
763 815 9.092338 ACATACATGGCATCAAATTGGTATATT 57.908 29.630 0.00 0.00 0.00 1.28
764 816 8.654485 ACATACATGGCATCAAATTGGTATAT 57.346 30.769 0.00 0.00 0.00 0.86
765 817 8.476064 AACATACATGGCATCAAATTGGTATA 57.524 30.769 0.00 0.00 0.00 1.47
766 818 6.982160 ACATACATGGCATCAAATTGGTAT 57.018 33.333 0.00 0.00 0.00 2.73
767 819 6.788598 AACATACATGGCATCAAATTGGTA 57.211 33.333 0.00 0.00 0.00 3.25
768 820 5.680594 AACATACATGGCATCAAATTGGT 57.319 34.783 0.00 0.00 0.00 3.67
769 821 5.984926 GGTAACATACATGGCATCAAATTGG 59.015 40.000 0.00 0.00 0.00 3.16
770 822 6.571605 TGGTAACATACATGGCATCAAATTG 58.428 36.000 0.00 0.00 46.17 2.32
771 823 6.788598 TGGTAACATACATGGCATCAAATT 57.211 33.333 0.00 0.00 46.17 1.82
841 893 9.297586 CACGAATAAGTGTACATCTAGCTTTTA 57.702 33.333 0.00 0.00 37.35 1.52
842 894 7.277981 CCACGAATAAGTGTACATCTAGCTTTT 59.722 37.037 0.00 0.00 40.33 2.27
843 895 6.757010 CCACGAATAAGTGTACATCTAGCTTT 59.243 38.462 0.00 0.00 40.33 3.51
844 896 6.096423 TCCACGAATAAGTGTACATCTAGCTT 59.904 38.462 0.00 0.00 40.33 3.74
845 897 5.593095 TCCACGAATAAGTGTACATCTAGCT 59.407 40.000 0.00 0.00 40.33 3.32
846 898 5.686397 GTCCACGAATAAGTGTACATCTAGC 59.314 44.000 0.00 0.00 40.33 3.42
847 899 5.907945 CGTCCACGAATAAGTGTACATCTAG 59.092 44.000 0.00 0.00 43.02 2.43
848 900 5.220912 CCGTCCACGAATAAGTGTACATCTA 60.221 44.000 0.00 0.00 43.02 1.98
849 901 4.439700 CCGTCCACGAATAAGTGTACATCT 60.440 45.833 0.00 0.00 43.02 2.90
850 902 3.795101 CCGTCCACGAATAAGTGTACATC 59.205 47.826 0.00 0.00 43.02 3.06
851 903 3.444742 TCCGTCCACGAATAAGTGTACAT 59.555 43.478 0.00 0.00 43.02 2.29
852 904 2.819019 TCCGTCCACGAATAAGTGTACA 59.181 45.455 0.00 0.00 43.02 2.90
853 905 3.432782 CTCCGTCCACGAATAAGTGTAC 58.567 50.000 0.00 0.00 43.02 2.90
854 906 2.424601 CCTCCGTCCACGAATAAGTGTA 59.575 50.000 0.00 0.00 43.02 2.90
855 907 1.203994 CCTCCGTCCACGAATAAGTGT 59.796 52.381 0.00 0.00 43.02 3.55
856 908 1.470979 CCCTCCGTCCACGAATAAGTG 60.471 57.143 0.00 0.00 43.02 3.16
857 909 0.822164 CCCTCCGTCCACGAATAAGT 59.178 55.000 0.00 0.00 43.02 2.24
858 910 1.067212 CTCCCTCCGTCCACGAATAAG 59.933 57.143 0.00 0.00 43.02 1.73
859 911 1.108776 CTCCCTCCGTCCACGAATAA 58.891 55.000 0.00 0.00 43.02 1.40
860 912 0.033796 ACTCCCTCCGTCCACGAATA 60.034 55.000 0.00 0.00 43.02 1.75
861 913 0.033796 TACTCCCTCCGTCCACGAAT 60.034 55.000 0.00 0.00 43.02 3.34
862 914 0.251297 TTACTCCCTCCGTCCACGAA 60.251 55.000 0.00 0.00 43.02 3.85
863 915 0.033796 ATTACTCCCTCCGTCCACGA 60.034 55.000 0.00 0.00 43.02 4.35
864 916 0.384669 GATTACTCCCTCCGTCCACG 59.615 60.000 0.00 0.00 39.44 4.94
865 917 1.777941 AGATTACTCCCTCCGTCCAC 58.222 55.000 0.00 0.00 0.00 4.02
866 918 2.242965 TGTAGATTACTCCCTCCGTCCA 59.757 50.000 0.00 0.00 0.00 4.02
867 919 2.622470 GTGTAGATTACTCCCTCCGTCC 59.378 54.545 0.00 0.00 0.00 4.79
868 920 3.553904 AGTGTAGATTACTCCCTCCGTC 58.446 50.000 0.00 0.00 0.00 4.79
869 921 3.666345 AGTGTAGATTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
870 922 3.068307 CCAAGTGTAGATTACTCCCTCCG 59.932 52.174 0.00 0.00 0.00 4.63
871 923 4.287552 TCCAAGTGTAGATTACTCCCTCC 58.712 47.826 0.00 0.00 0.00 4.30
872 924 5.598830 TCATCCAAGTGTAGATTACTCCCTC 59.401 44.000 0.00 0.00 0.00 4.30
873 925 5.364157 GTCATCCAAGTGTAGATTACTCCCT 59.636 44.000 0.00 0.00 0.00 4.20
874 926 5.453480 GGTCATCCAAGTGTAGATTACTCCC 60.453 48.000 0.00 0.00 0.00 4.30
875 927 5.453480 GGGTCATCCAAGTGTAGATTACTCC 60.453 48.000 0.00 0.00 35.00 3.85
876 928 5.128827 TGGGTCATCCAAGTGTAGATTACTC 59.871 44.000 0.00 0.00 43.84 2.59
877 929 5.030147 TGGGTCATCCAAGTGTAGATTACT 58.970 41.667 0.00 0.00 43.84 2.24
878 930 5.353394 TGGGTCATCCAAGTGTAGATTAC 57.647 43.478 0.00 0.00 43.84 1.89
932 984 4.503296 CCAATATAAGGAGTCAAGGGGTCG 60.503 50.000 0.00 0.00 0.00 4.79
934 986 4.412528 GTCCAATATAAGGAGTCAAGGGGT 59.587 45.833 0.00 0.00 35.42 4.95
1020 1074 0.971386 TACCGCCTATCCCGAATTCC 59.029 55.000 0.00 0.00 0.00 3.01
1062 1118 4.351192 CATTGGTCTATTTAAAGCCACGC 58.649 43.478 0.00 0.00 0.00 5.34
1082 1138 1.708341 GGGGTGCTTTATCCATGCAT 58.292 50.000 0.00 0.00 37.83 3.96
1110 1166 3.330720 ACAAAGCGGGGAGGGAGG 61.331 66.667 0.00 0.00 0.00 4.30
1128 1184 1.512926 GGTTGTAGTGGTGAGCAGTG 58.487 55.000 1.62 0.00 0.00 3.66
1178 1234 6.886459 ACTAATGTGCAGTAAATTGTGGATCT 59.114 34.615 0.00 0.00 0.00 2.75
1214 1270 1.448985 TCATGCGAGTTACCTTTGCC 58.551 50.000 0.00 0.00 0.00 4.52
1274 1330 2.344592 ACCTCTCATACAAACCCCACA 58.655 47.619 0.00 0.00 0.00 4.17
1276 1332 3.655777 AGAAACCTCTCATACAAACCCCA 59.344 43.478 0.00 0.00 0.00 4.96
1277 1333 4.010349 CAGAAACCTCTCATACAAACCCC 58.990 47.826 0.00 0.00 0.00 4.95
1285 1341 3.952323 CGTCTACCCAGAAACCTCTCATA 59.048 47.826 0.00 0.00 30.85 2.15
1301 1357 6.604735 ATCAAAATTACTGCCATCGTCTAC 57.395 37.500 0.00 0.00 0.00 2.59
1321 1377 8.556517 CGAAGATCGTACTACAAATGTTATCA 57.443 34.615 0.00 0.00 34.72 2.15
1478 1534 2.813908 AACGGCACCGCGATCTTC 60.814 61.111 8.23 0.00 44.19 2.87
1784 1846 0.604578 CACCACCCATCCAGCAAAAG 59.395 55.000 0.00 0.00 0.00 2.27
1826 1893 8.864024 CAAAAAGAAGGAGAGAAAAGAAAACAC 58.136 33.333 0.00 0.00 0.00 3.32
1827 1894 8.034804 CCAAAAAGAAGGAGAGAAAAGAAAACA 58.965 33.333 0.00 0.00 0.00 2.83
1828 1895 8.251026 TCCAAAAAGAAGGAGAGAAAAGAAAAC 58.749 33.333 0.00 0.00 0.00 2.43
1829 1896 8.361169 TCCAAAAAGAAGGAGAGAAAAGAAAA 57.639 30.769 0.00 0.00 0.00 2.29
1833 1900 6.718912 AGGATCCAAAAAGAAGGAGAGAAAAG 59.281 38.462 15.82 0.00 37.34 2.27
1861 1928 2.030958 GTTCCCCGTCGACGCAAAT 61.031 57.895 31.73 0.00 38.18 2.32
1940 2007 9.453572 ACTTTGTTATATATACAGATGGCCATG 57.546 33.333 26.56 14.75 0.00 3.66
1941 2008 9.453572 CACTTTGTTATATATACAGATGGCCAT 57.546 33.333 20.96 20.96 0.00 4.40
1942 2009 8.436778 ACACTTTGTTATATATACAGATGGCCA 58.563 33.333 8.56 8.56 0.00 5.36
1987 2054 1.153509 GCTGTGCAATTGCCCATCC 60.154 57.895 26.94 12.15 41.18 3.51
1988 2055 0.179119 GAGCTGTGCAATTGCCCATC 60.179 55.000 26.94 17.51 41.18 3.51
2002 2069 8.539770 TGAAACTTTTTGATCTACTAGAGCTG 57.460 34.615 0.00 0.00 30.68 4.24
2013 2080 9.922305 CGAGGTATATTCTGAAACTTTTTGATC 57.078 33.333 0.00 0.00 0.00 2.92
2015 2082 7.148306 GGCGAGGTATATTCTGAAACTTTTTGA 60.148 37.037 0.00 0.00 0.00 2.69
2016 2083 6.967199 GGCGAGGTATATTCTGAAACTTTTTG 59.033 38.462 0.00 0.00 0.00 2.44
2018 2085 6.177610 TGGCGAGGTATATTCTGAAACTTTT 58.822 36.000 0.00 0.00 0.00 2.27
2019 2086 5.741011 TGGCGAGGTATATTCTGAAACTTT 58.259 37.500 0.00 0.00 0.00 2.66
2020 2087 5.353394 TGGCGAGGTATATTCTGAAACTT 57.647 39.130 0.00 0.00 0.00 2.66
2021 2088 5.353394 TTGGCGAGGTATATTCTGAAACT 57.647 39.130 0.00 0.00 0.00 2.66
2022 2089 6.431198 TTTTGGCGAGGTATATTCTGAAAC 57.569 37.500 0.00 0.00 0.00 2.78
2057 2124 7.739498 TCTTCCAGGCGTATAAAAATATTCC 57.261 36.000 0.00 0.00 0.00 3.01
2093 2160 6.055368 GGGTTCAAATCCCACTGTCAACAG 62.055 50.000 8.59 8.59 44.05 3.16
2195 2263 1.284657 AAGCGTTCATGATCTCTGCG 58.715 50.000 0.00 0.00 0.00 5.18
2206 2274 3.197766 AGGATGATGGTAGAAAGCGTTCA 59.802 43.478 14.88 0.00 36.09 3.18
2232 2300 5.351458 AGACAGGTTCAGAAATTGTTTTGC 58.649 37.500 3.08 0.00 0.00 3.68
2233 2301 6.799512 AGAGACAGGTTCAGAAATTGTTTTG 58.200 36.000 3.08 0.00 0.00 2.44
2240 2324 7.000472 TGAAATTGAGAGACAGGTTCAGAAAT 59.000 34.615 0.00 0.00 32.89 2.17
2280 2364 9.603189 ACTAATTAGCTAGTAATACCCAGTGAT 57.397 33.333 12.54 0.00 30.55 3.06
2330 2415 4.424566 GCTGTGCGCCATGTTGGG 62.425 66.667 4.18 0.00 38.19 4.12
2384 2471 1.325640 CGTTCGTTGCCATCAGATGAG 59.674 52.381 12.41 3.43 0.00 2.90
2395 2482 1.591158 TCTGTCTGTTTCGTTCGTTGC 59.409 47.619 0.00 0.00 0.00 4.17
2396 2483 2.218759 CCTCTGTCTGTTTCGTTCGTTG 59.781 50.000 0.00 0.00 0.00 4.10
2402 2489 1.754803 TGTCACCTCTGTCTGTTTCGT 59.245 47.619 0.00 0.00 0.00 3.85
2452 2539 1.050204 AGCATGTTGTTGGTTGCCAT 58.950 45.000 0.00 0.00 35.71 4.40
2476 2563 6.649557 GTGATATAACCTACAACTATGTGGCC 59.350 42.308 0.00 0.00 40.84 5.36
2507 2621 7.455638 ACCTGTTACCTAAAGACCAGTATTACA 59.544 37.037 0.00 0.00 0.00 2.41
2526 2640 8.983702 AAAGACCAGTGTTATTTAACCTGTTA 57.016 30.769 13.26 0.00 35.03 2.41
2533 2647 9.179909 TGTTCTGAAAAGACCAGTGTTATTTAA 57.820 29.630 0.00 0.00 33.57 1.52
2556 2670 7.228706 CCTTGTCCTTGAGTACATTTTAGTGTT 59.771 37.037 0.00 0.00 33.62 3.32
2575 2692 4.081322 TCAACTTTCACCTACCTTGTCC 57.919 45.455 0.00 0.00 0.00 4.02
2576 2693 5.355910 TGTTTCAACTTTCACCTACCTTGTC 59.644 40.000 0.00 0.00 0.00 3.18
2577 2694 5.258051 TGTTTCAACTTTCACCTACCTTGT 58.742 37.500 0.00 0.00 0.00 3.16
2578 2695 5.828299 TGTTTCAACTTTCACCTACCTTG 57.172 39.130 0.00 0.00 0.00 3.61
2579 2696 7.514721 TCTATGTTTCAACTTTCACCTACCTT 58.485 34.615 0.00 0.00 0.00 3.50
2580 2697 7.074653 TCTATGTTTCAACTTTCACCTACCT 57.925 36.000 0.00 0.00 0.00 3.08
2586 2703 8.454106 AGCATACATCTATGTTTCAACTTTCAC 58.546 33.333 0.12 0.00 41.97 3.18
2603 2720 8.893727 AGTTTTCAACTACCATTAGCATACATC 58.106 33.333 0.00 0.00 40.69 3.06
2636 2753 6.741992 ATGCATTTTCTTGAGATACGTCAA 57.258 33.333 0.00 0.00 35.16 3.18
2639 2756 7.849804 AGTTATGCATTTTCTTGAGATACGT 57.150 32.000 3.54 0.00 0.00 3.57
2680 2797 4.019174 ACATGATTGATCCGAGCCTTTTT 58.981 39.130 0.00 0.00 0.00 1.94
2717 2834 2.230892 TGCTGAACGCACGGTTTAG 58.769 52.632 0.00 0.00 45.47 1.85
2802 2919 3.660111 GTGTTGCTGGTGTCGCCC 61.660 66.667 0.00 0.00 36.04 6.13
2836 2953 0.836606 TGCAGGTGTCCTCAGTTTCA 59.163 50.000 0.00 0.00 0.00 2.69
2852 2969 7.015974 AGGTGAATGAGATTATAGACAGATGCA 59.984 37.037 0.00 0.00 0.00 3.96
2854 2971 8.034215 GGAGGTGAATGAGATTATAGACAGATG 58.966 40.741 0.00 0.00 0.00 2.90
2865 2982 1.407437 GCGGTGGAGGTGAATGAGATT 60.407 52.381 0.00 0.00 0.00 2.40
2880 2997 4.533222 ACGAAAAATTTACTTCAGCGGTG 58.467 39.130 8.67 8.67 0.00 4.94
2895 3012 0.725686 TTGTGCCGTTCGACGAAAAA 59.274 45.000 12.67 0.00 46.05 1.94
2901 3018 2.551270 CTGCTTGTGCCGTTCGAC 59.449 61.111 0.00 0.00 38.71 4.20
2906 3023 1.823470 TCTTTGCTGCTTGTGCCGT 60.823 52.632 0.00 0.00 38.71 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.