Multiple sequence alignment - TraesCS7A01G373600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G373600 chr7A 100.000 2444 0 0 1 2444 546634506 546636949 0.000000e+00 4514.0
1 TraesCS7A01G373600 chr7B 87.439 1441 114 34 430 1843 467424401 467423001 0.000000e+00 1596.0
2 TraesCS7A01G373600 chr7B 86.890 328 31 9 482 806 685614547 685614865 8.310000e-95 357.0
3 TraesCS7A01G373600 chr7B 80.258 466 58 20 7 457 467424866 467424420 1.090000e-83 320.0
4 TraesCS7A01G373600 chr7B 84.776 335 29 13 2118 2440 467422703 467422379 1.410000e-82 316.0
5 TraesCS7A01G373600 chr7B 93.478 46 2 1 920 965 685614881 685614925 1.570000e-07 67.6
6 TraesCS7A01G373600 chr7D 87.007 1470 103 40 422 1843 449457481 449456052 0.000000e+00 1576.0
7 TraesCS7A01G373600 chr7D 80.612 490 46 19 1 460 449457962 449457492 1.400000e-87 333.0
8 TraesCS7A01G373600 chr7D 87.814 279 25 4 2162 2440 449455739 449455470 3.920000e-83 318.0
9 TraesCS7A01G373600 chr6D 86.729 535 58 9 434 963 322696623 322697149 1.260000e-162 582.0
10 TraesCS7A01G373600 chr6D 87.449 486 49 8 482 963 384197547 384197070 1.280000e-152 549.0
11 TraesCS7A01G373600 chrUn 86.011 529 61 9 440 963 102601224 102600704 2.750000e-154 555.0
12 TraesCS7A01G373600 chrUn 85.897 468 55 7 434 899 162675393 162675851 2.820000e-134 488.0
13 TraesCS7A01G373600 chr3D 85.794 535 63 9 434 963 596627359 596627885 2.750000e-154 555.0
14 TraesCS7A01G373600 chr2B 88.449 303 29 6 509 809 50582048 50581750 6.420000e-96 361.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G373600 chr7A 546634506 546636949 2443 False 4514.000000 4514 100.000000 1 2444 1 chr7A.!!$F1 2443
1 TraesCS7A01G373600 chr7B 467422379 467424866 2487 True 744.000000 1596 84.157667 7 2440 3 chr7B.!!$R1 2433
2 TraesCS7A01G373600 chr7D 449455470 449457962 2492 True 742.333333 1576 85.144333 1 2440 3 chr7D.!!$R1 2439
3 TraesCS7A01G373600 chr6D 322696623 322697149 526 False 582.000000 582 86.729000 434 963 1 chr6D.!!$F1 529
4 TraesCS7A01G373600 chrUn 102600704 102601224 520 True 555.000000 555 86.011000 440 963 1 chrUn.!!$R1 523
5 TraesCS7A01G373600 chr3D 596627359 596627885 526 False 555.000000 555 85.794000 434 963 1 chr3D.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 935 0.033894 TTAATGGCCGTCCCTTTCCC 60.034 55.0 0.0 0.0 33.41 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1877 0.235665 CAACACGGCAGCAACAGTAG 59.764 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.106341 GGGGATAATGAGGATGGAAAGGAA 59.894 45.833 0.00 0.00 0.00 3.36
33 34 1.843206 AGGATGGAAAGGAAGGAGAGC 59.157 52.381 0.00 0.00 0.00 4.09
43 44 2.188817 GGAAGGAGAGCCTGGAGTTTA 58.811 52.381 0.00 0.00 46.28 2.01
47 48 3.995636 AGGAGAGCCTGGAGTTTATGTA 58.004 45.455 0.00 0.00 44.90 2.29
49 50 4.971924 AGGAGAGCCTGGAGTTTATGTAAT 59.028 41.667 0.00 0.00 44.90 1.89
69 70 4.965200 ATAGAGAAATGCTACCAGGGAC 57.035 45.455 0.00 0.00 0.00 4.46
72 73 3.330701 AGAGAAATGCTACCAGGGACAAA 59.669 43.478 0.00 0.00 0.00 2.83
87 88 3.126831 GGACAAAGACATGAGCGGATAG 58.873 50.000 0.00 0.00 0.00 2.08
101 102 2.473576 GGATAGCCGGATATAGGGGT 57.526 55.000 13.20 0.00 37.81 4.95
103 104 2.358932 GGATAGCCGGATATAGGGGTGA 60.359 54.545 13.20 0.00 35.32 4.02
141 146 5.824904 AAATGTTGGCAGTCTGTATCATC 57.175 39.130 0.93 0.00 0.00 2.92
142 147 4.767578 ATGTTGGCAGTCTGTATCATCT 57.232 40.909 0.93 0.00 0.00 2.90
143 148 5.876651 ATGTTGGCAGTCTGTATCATCTA 57.123 39.130 0.93 0.00 0.00 1.98
218 250 1.198759 GCCACCTTCCACTCTACCCA 61.199 60.000 0.00 0.00 0.00 4.51
220 252 0.250513 CACCTTCCACTCTACCCAGC 59.749 60.000 0.00 0.00 0.00 4.85
236 268 3.135712 ACCCAGCGTAATGATGATTGGTA 59.864 43.478 0.00 0.00 35.47 3.25
253 285 1.134965 GGTAGTTCGCTGATGCTGACT 60.135 52.381 0.00 0.00 36.47 3.41
273 305 2.423185 CTGGAGCCGAAATACAATTGCA 59.577 45.455 5.05 0.00 0.00 4.08
274 306 3.023119 TGGAGCCGAAATACAATTGCAT 58.977 40.909 5.05 0.00 0.00 3.96
278 310 5.005682 GGAGCCGAAATACAATTGCATTTTC 59.994 40.000 16.02 14.88 0.00 2.29
283 315 6.183360 CCGAAATACAATTGCATTTTCCCTTG 60.183 38.462 16.02 6.21 0.00 3.61
287 319 2.745281 CAATTGCATTTTCCCTTGGCTG 59.255 45.455 0.00 0.00 0.00 4.85
288 320 0.686224 TTGCATTTTCCCTTGGCTGG 59.314 50.000 0.00 0.00 0.00 4.85
289 321 1.078918 GCATTTTCCCTTGGCTGGC 60.079 57.895 0.00 0.00 0.00 4.85
290 322 1.547472 GCATTTTCCCTTGGCTGGCT 61.547 55.000 2.00 0.00 0.00 4.75
291 323 0.978907 CATTTTCCCTTGGCTGGCTT 59.021 50.000 2.00 0.00 0.00 4.35
292 324 1.348696 CATTTTCCCTTGGCTGGCTTT 59.651 47.619 2.00 0.00 0.00 3.51
293 325 0.758123 TTTTCCCTTGGCTGGCTTTG 59.242 50.000 2.00 0.00 0.00 2.77
294 326 1.757423 TTTCCCTTGGCTGGCTTTGC 61.757 55.000 2.00 0.00 0.00 3.68
317 349 2.134630 CTCTTGGGCCCTCTGCACTT 62.135 60.000 25.70 0.00 46.54 3.16
330 362 3.254060 TCTGCACTTCTTATTCAGACGC 58.746 45.455 0.00 0.00 0.00 5.19
333 365 2.094417 GCACTTCTTATTCAGACGCACC 59.906 50.000 0.00 0.00 0.00 5.01
340 372 1.878953 ATTCAGACGCACCGTTTCTT 58.121 45.000 0.00 0.00 41.37 2.52
344 376 1.126846 CAGACGCACCGTTTCTTCATC 59.873 52.381 0.00 0.00 41.37 2.92
345 377 0.093026 GACGCACCGTTTCTTCATCG 59.907 55.000 0.00 0.00 41.37 3.84
348 380 1.144969 GCACCGTTTCTTCATCGACA 58.855 50.000 0.00 0.00 0.00 4.35
351 383 2.663602 CACCGTTTCTTCATCGACAGAG 59.336 50.000 0.00 0.00 0.00 3.35
354 386 4.022589 ACCGTTTCTTCATCGACAGAGTTA 60.023 41.667 0.00 0.00 0.00 2.24
365 397 2.474816 GACAGAGTTATGGTGGCGATC 58.525 52.381 0.00 0.00 0.00 3.69
366 398 1.202417 ACAGAGTTATGGTGGCGATCG 60.202 52.381 11.69 11.69 0.00 3.69
367 399 0.249489 AGAGTTATGGTGGCGATCGC 60.249 55.000 31.52 31.52 41.06 4.58
396 428 7.292356 TCCATATGAAAGGTAAGATTCCTGCTA 59.708 37.037 3.65 0.00 35.27 3.49
400 432 5.248477 TGAAAGGTAAGATTCCTGCTACACT 59.752 40.000 0.00 0.00 35.27 3.55
409 441 7.430760 AGATTCCTGCTACACTATTTTCTCT 57.569 36.000 0.00 0.00 0.00 3.10
418 450 7.492669 TGCTACACTATTTTCTCTGCTATGTTC 59.507 37.037 0.00 0.00 0.00 3.18
457 535 4.481463 CGACGCATATCATACATACACCA 58.519 43.478 0.00 0.00 0.00 4.17
460 538 6.750039 CGACGCATATCATACATACACCATAA 59.250 38.462 0.00 0.00 0.00 1.90
462 540 8.251750 ACGCATATCATACATACACCATAAAC 57.748 34.615 0.00 0.00 0.00 2.01
463 541 7.333423 ACGCATATCATACATACACCATAAACC 59.667 37.037 0.00 0.00 0.00 3.27
465 543 8.883731 GCATATCATACATACACCATAAACCTC 58.116 37.037 0.00 0.00 0.00 3.85
469 547 8.731275 TCATACATACACCATAAACCTCTTTG 57.269 34.615 0.00 0.00 0.00 2.77
470 548 8.325787 TCATACATACACCATAAACCTCTTTGT 58.674 33.333 0.00 0.00 0.00 2.83
471 549 6.817765 ACATACACCATAAACCTCTTTGTG 57.182 37.500 0.00 0.00 0.00 3.33
473 551 4.447138 ACACCATAAACCTCTTTGTGGA 57.553 40.909 13.93 0.00 46.65 4.02
474 552 4.998051 ACACCATAAACCTCTTTGTGGAT 58.002 39.130 13.93 1.85 46.65 3.41
477 555 4.292306 ACCATAAACCTCTTTGTGGATCCT 59.708 41.667 14.23 0.00 46.65 3.24
478 556 4.884164 CCATAAACCTCTTTGTGGATCCTC 59.116 45.833 14.23 10.39 46.65 3.71
479 557 5.339530 CCATAAACCTCTTTGTGGATCCTCT 60.340 44.000 14.23 0.00 46.65 3.69
512 599 3.473923 TCACTTGCACTTCACATCAGA 57.526 42.857 0.00 0.00 0.00 3.27
513 600 4.011966 TCACTTGCACTTCACATCAGAT 57.988 40.909 0.00 0.00 0.00 2.90
514 601 3.999001 TCACTTGCACTTCACATCAGATC 59.001 43.478 0.00 0.00 0.00 2.75
515 602 3.749609 CACTTGCACTTCACATCAGATCA 59.250 43.478 0.00 0.00 0.00 2.92
516 603 4.001652 ACTTGCACTTCACATCAGATCAG 58.998 43.478 0.00 0.00 0.00 2.90
517 604 2.981898 TGCACTTCACATCAGATCAGG 58.018 47.619 0.00 0.00 0.00 3.86
539 626 2.736400 GCCAACTAGTGCATCCATTTGC 60.736 50.000 0.00 0.00 43.07 3.68
596 683 0.808755 GGGTTTGGTGATGCTTACCG 59.191 55.000 0.00 0.00 41.18 4.02
607 694 0.676466 TGCTTACCGGTTGCTCATGG 60.676 55.000 25.49 6.25 0.00 3.66
639 726 1.225704 CTCTTCCCTCCACATGCCC 59.774 63.158 0.00 0.00 0.00 5.36
697 784 8.972127 TCAGAATAGTAGTTTAATCTGACAGCT 58.028 33.333 0.00 0.00 35.63 4.24
699 786 9.196139 AGAATAGTAGTTTAATCTGACAGCTCT 57.804 33.333 0.00 0.00 0.00 4.09
714 801 4.781934 ACAGCTCTTGTCCTGTTTTAACT 58.218 39.130 0.00 0.00 39.11 2.24
730 817 9.408069 CTGTTTTAACTGAACGTAGACTAATCT 57.592 33.333 0.00 0.00 39.15 2.40
733 820 9.837525 TTTTAACTGAACGTAGACTAATCTCTC 57.162 33.333 0.00 0.00 36.29 3.20
736 823 6.123651 ACTGAACGTAGACTAATCTCTCCAT 58.876 40.000 0.00 0.00 36.29 3.41
747 834 8.919145 AGACTAATCTCTCCATAGGTTTGTTAG 58.081 37.037 0.00 0.00 0.00 2.34
751 838 8.611051 AATCTCTCCATAGGTTTGTTAGTAGT 57.389 34.615 0.00 0.00 0.00 2.73
825 912 1.342819 GTTGACTGCTCTCCTGTCTGT 59.657 52.381 0.00 0.00 41.45 3.41
847 934 1.100510 GTTAATGGCCGTCCCTTTCC 58.899 55.000 0.00 0.00 33.41 3.13
848 935 0.033894 TTAATGGCCGTCCCTTTCCC 60.034 55.000 0.00 0.00 33.41 3.97
863 950 7.527196 CGTCCCTTTCCCTTCACATATATACAT 60.527 40.741 0.00 0.00 0.00 2.29
866 953 7.764443 CCCTTTCCCTTCACATATATACATACG 59.236 40.741 0.00 0.00 0.00 3.06
868 955 6.844097 TCCCTTCACATATATACATACGCA 57.156 37.500 0.00 0.00 0.00 5.24
871 958 6.531594 CCCTTCACATATATACATACGCACAG 59.468 42.308 0.00 0.00 0.00 3.66
872 959 6.531594 CCTTCACATATATACATACGCACAGG 59.468 42.308 0.00 0.00 0.00 4.00
875 962 6.036470 CACATATATACATACGCACAGGAGG 58.964 44.000 0.00 0.00 0.00 4.30
876 963 3.594603 ATATACATACGCACAGGAGGC 57.405 47.619 0.00 0.00 0.00 4.70
878 965 0.686441 TACATACGCACAGGAGGCCT 60.686 55.000 3.86 3.86 0.00 5.19
902 992 0.825010 AGGCAAAGCACCAACCTCAG 60.825 55.000 0.00 0.00 0.00 3.35
927 1026 1.004044 CACATCCTCCTTGCCTCTTGT 59.996 52.381 0.00 0.00 0.00 3.16
940 1039 2.037772 GCCTCTTGTGTTCTCTTCTCCA 59.962 50.000 0.00 0.00 0.00 3.86
996 1095 2.203998 AGGGGAGGTGGACAGGTG 60.204 66.667 0.00 0.00 0.00 4.00
998 1097 4.394712 GGGAGGTGGACAGGTGCG 62.395 72.222 0.00 0.00 0.00 5.34
1026 1129 0.526524 GGTTGCAGAGATCGTCCTCG 60.527 60.000 0.00 0.00 38.19 4.63
1424 1527 2.047274 CGCCAAGCCGAAGAGGAA 60.047 61.111 0.00 0.00 45.00 3.36
1432 1535 2.391389 CCGAAGAGGAAGCAACGGC 61.391 63.158 0.00 0.00 45.00 5.68
1462 1565 2.124151 GCTTGATCGGGCCATGGT 60.124 61.111 14.67 0.00 0.00 3.55
1465 1568 3.357444 TTGATCGGGCCATGGTGGG 62.357 63.158 14.67 2.55 38.19 4.61
1497 1604 5.665459 GAGCTGTGTTTATACTGGAGTGAT 58.335 41.667 0.00 0.00 0.00 3.06
1505 1612 7.172190 GTGTTTATACTGGAGTGATGATGATGG 59.828 40.741 0.00 0.00 0.00 3.51
1541 1651 6.584185 ATTGGTTGGTTTGTATTGTACTCC 57.416 37.500 0.00 0.00 0.00 3.85
1630 1740 1.863267 GGATTCAGATCCGTGAGCTG 58.137 55.000 11.46 11.46 45.99 4.24
1654 1764 1.085091 GCTGCTGTTGAGATCTGTGG 58.915 55.000 0.00 0.00 0.00 4.17
1661 1771 3.993081 CTGTTGAGATCTGTGGTGTTCTC 59.007 47.826 0.00 0.00 36.09 2.87
1673 1783 3.007398 GTGGTGTTCTCTCTTGATCTGGT 59.993 47.826 0.00 0.00 0.00 4.00
1679 1789 2.169978 TCTCTCTTGATCTGGTGCATGG 59.830 50.000 0.00 0.00 0.00 3.66
1680 1790 1.022735 CTCTTGATCTGGTGCATGGC 58.977 55.000 0.00 0.00 0.00 4.40
1681 1791 0.394762 TCTTGATCTGGTGCATGGCC 60.395 55.000 0.00 0.00 0.00 5.36
1685 1795 0.743097 GATCTGGTGCATGGCCTTTC 59.257 55.000 3.32 0.00 0.00 2.62
1689 1799 2.037847 GTGCATGGCCTTTCCCCT 59.962 61.111 3.32 0.00 0.00 4.79
1690 1800 2.054453 GTGCATGGCCTTTCCCCTC 61.054 63.158 3.32 0.00 0.00 4.30
1692 1802 1.755783 GCATGGCCTTTCCCCTCTG 60.756 63.158 3.32 0.00 0.00 3.35
1693 1803 1.076485 CATGGCCTTTCCCCTCTGG 60.076 63.158 3.32 0.00 0.00 3.86
1715 1847 3.605664 GCTGGGCGTTGGTTGCTT 61.606 61.111 0.00 0.00 0.00 3.91
1716 1848 2.336088 CTGGGCGTTGGTTGCTTG 59.664 61.111 0.00 0.00 0.00 4.01
1717 1849 2.124109 TGGGCGTTGGTTGCTTGA 60.124 55.556 0.00 0.00 0.00 3.02
1718 1850 1.526575 CTGGGCGTTGGTTGCTTGAT 61.527 55.000 0.00 0.00 0.00 2.57
1719 1851 1.112315 TGGGCGTTGGTTGCTTGATT 61.112 50.000 0.00 0.00 0.00 2.57
1720 1852 0.667184 GGGCGTTGGTTGCTTGATTG 60.667 55.000 0.00 0.00 0.00 2.67
1721 1853 0.667184 GGCGTTGGTTGCTTGATTGG 60.667 55.000 0.00 0.00 0.00 3.16
1745 1877 1.265095 CATGTGAGTGTGAGGTGTTGC 59.735 52.381 0.00 0.00 0.00 4.17
1746 1878 0.541392 TGTGAGTGTGAGGTGTTGCT 59.459 50.000 0.00 0.00 0.00 3.91
1749 1881 2.039418 TGAGTGTGAGGTGTTGCTACT 58.961 47.619 0.00 0.00 0.00 2.57
1750 1882 2.224042 TGAGTGTGAGGTGTTGCTACTG 60.224 50.000 0.00 0.00 0.00 2.74
1751 1883 1.762957 AGTGTGAGGTGTTGCTACTGT 59.237 47.619 0.00 0.00 0.00 3.55
1752 1884 2.170607 AGTGTGAGGTGTTGCTACTGTT 59.829 45.455 0.00 0.00 0.00 3.16
1753 1885 2.287915 GTGTGAGGTGTTGCTACTGTTG 59.712 50.000 0.00 0.00 0.00 3.33
1754 1886 1.264288 GTGAGGTGTTGCTACTGTTGC 59.736 52.381 7.29 7.29 0.00 4.17
1755 1887 1.140852 TGAGGTGTTGCTACTGTTGCT 59.859 47.619 14.81 0.00 0.00 3.91
1756 1888 1.532868 GAGGTGTTGCTACTGTTGCTG 59.467 52.381 14.81 0.00 0.00 4.41
1757 1889 0.040067 GGTGTTGCTACTGTTGCTGC 60.040 55.000 14.81 8.30 0.00 5.25
1758 1890 0.040067 GTGTTGCTACTGTTGCTGCC 60.040 55.000 14.81 4.14 0.00 4.85
1759 1891 1.207593 GTTGCTACTGTTGCTGCCG 59.792 57.895 14.81 0.00 0.00 5.69
1794 1934 4.165779 GGAGTTGCAACCATAAACAATCG 58.834 43.478 25.62 0.00 0.00 3.34
1813 1953 1.077915 GATTGGGCGGCAAAACATTG 58.922 50.000 12.47 0.00 0.00 2.82
1818 1958 2.432285 CGGCAAAACATTGGGGCG 60.432 61.111 0.00 0.00 42.72 6.13
1822 1962 1.005156 CAAAACATTGGGGCGTGGG 60.005 57.895 0.00 0.00 0.00 4.61
1843 1984 0.108992 CATGTGTGTTCATGCTGCCC 60.109 55.000 0.00 0.00 38.65 5.36
1844 1985 0.540133 ATGTGTGTTCATGCTGCCCA 60.540 50.000 0.00 0.00 0.00 5.36
1845 1986 0.754587 TGTGTGTTCATGCTGCCCAA 60.755 50.000 0.00 0.00 0.00 4.12
1861 2037 2.781945 CCAAGCTATGGCGAATTTCC 57.218 50.000 0.00 0.00 43.80 3.13
1863 2039 2.291741 CCAAGCTATGGCGAATTTCCTC 59.708 50.000 0.00 0.00 43.80 3.71
1864 2040 1.871080 AGCTATGGCGAATTTCCTCG 58.129 50.000 0.00 0.00 44.37 4.63
1866 2042 1.527311 GCTATGGCGAATTTCCTCGTC 59.473 52.381 0.00 0.00 43.70 4.20
1867 2043 2.135933 CTATGGCGAATTTCCTCGTCC 58.864 52.381 0.00 0.00 42.76 4.79
1868 2044 0.541863 ATGGCGAATTTCCTCGTCCT 59.458 50.000 0.00 0.00 42.76 3.85
1869 2045 0.323629 TGGCGAATTTCCTCGTCCTT 59.676 50.000 0.00 0.00 42.76 3.36
1870 2046 0.727398 GGCGAATTTCCTCGTCCTTG 59.273 55.000 0.00 0.00 40.99 3.61
1871 2047 0.097150 GCGAATTTCCTCGTCCTTGC 59.903 55.000 0.00 0.00 40.99 4.01
1872 2048 1.726853 CGAATTTCCTCGTCCTTGCT 58.273 50.000 0.00 0.00 34.08 3.91
1873 2049 2.076863 CGAATTTCCTCGTCCTTGCTT 58.923 47.619 0.00 0.00 34.08 3.91
1874 2050 2.484264 CGAATTTCCTCGTCCTTGCTTT 59.516 45.455 0.00 0.00 34.08 3.51
1876 2052 1.604604 TTTCCTCGTCCTTGCTTTGG 58.395 50.000 0.00 0.00 0.00 3.28
1877 2053 0.762418 TTCCTCGTCCTTGCTTTGGA 59.238 50.000 0.00 0.00 0.00 3.53
1879 2055 1.351017 TCCTCGTCCTTGCTTTGGAAT 59.649 47.619 0.00 0.00 35.10 3.01
1880 2056 1.740025 CCTCGTCCTTGCTTTGGAATC 59.260 52.381 0.00 0.00 35.10 2.52
1881 2057 2.616510 CCTCGTCCTTGCTTTGGAATCT 60.617 50.000 0.00 0.00 35.10 2.40
1882 2058 3.077359 CTCGTCCTTGCTTTGGAATCTT 58.923 45.455 0.00 0.00 35.10 2.40
1883 2059 3.486383 TCGTCCTTGCTTTGGAATCTTT 58.514 40.909 0.00 0.00 35.10 2.52
1884 2060 3.888930 TCGTCCTTGCTTTGGAATCTTTT 59.111 39.130 0.00 0.00 35.10 2.27
1885 2061 4.023193 TCGTCCTTGCTTTGGAATCTTTTC 60.023 41.667 0.00 0.00 35.10 2.29
1886 2062 4.022849 CGTCCTTGCTTTGGAATCTTTTCT 60.023 41.667 0.00 0.00 35.10 2.52
1887 2063 5.507985 CGTCCTTGCTTTGGAATCTTTTCTT 60.508 40.000 0.00 0.00 35.10 2.52
1888 2064 6.283694 GTCCTTGCTTTGGAATCTTTTCTTT 58.716 36.000 0.00 0.00 35.10 2.52
1889 2065 6.763135 GTCCTTGCTTTGGAATCTTTTCTTTT 59.237 34.615 0.00 0.00 35.10 2.27
1890 2066 6.762661 TCCTTGCTTTGGAATCTTTTCTTTTG 59.237 34.615 0.00 0.00 32.16 2.44
1891 2067 6.539826 CCTTGCTTTGGAATCTTTTCTTTTGT 59.460 34.615 0.00 0.00 32.16 2.83
1892 2068 7.710475 CCTTGCTTTGGAATCTTTTCTTTTGTA 59.290 33.333 0.00 0.00 32.16 2.41
1893 2069 9.264719 CTTGCTTTGGAATCTTTTCTTTTGTAT 57.735 29.630 0.00 0.00 32.16 2.29
1894 2070 9.612066 TTGCTTTGGAATCTTTTCTTTTGTATT 57.388 25.926 0.00 0.00 32.16 1.89
1900 2076 9.020731 TGGAATCTTTTCTTTTGTATTACCTCC 57.979 33.333 0.00 0.00 32.16 4.30
1901 2077 9.020731 GGAATCTTTTCTTTTGTATTACCTCCA 57.979 33.333 0.00 0.00 32.16 3.86
1904 2080 8.263940 TCTTTTCTTTTGTATTACCTCCATCG 57.736 34.615 0.00 0.00 0.00 3.84
1905 2081 6.431198 TTTCTTTTGTATTACCTCCATCGC 57.569 37.500 0.00 0.00 0.00 4.58
1906 2082 5.092554 TCTTTTGTATTACCTCCATCGCA 57.907 39.130 0.00 0.00 0.00 5.10
1907 2083 5.492895 TCTTTTGTATTACCTCCATCGCAA 58.507 37.500 0.00 0.00 0.00 4.85
1908 2084 5.941058 TCTTTTGTATTACCTCCATCGCAAA 59.059 36.000 0.00 0.00 0.00 3.68
1909 2085 6.601613 TCTTTTGTATTACCTCCATCGCAAAT 59.398 34.615 0.00 0.00 0.00 2.32
1910 2086 5.749596 TTGTATTACCTCCATCGCAAATG 57.250 39.130 0.00 0.00 0.00 2.32
1911 2087 5.029807 TGTATTACCTCCATCGCAAATGA 57.970 39.130 0.00 0.00 0.00 2.57
1912 2088 5.620206 TGTATTACCTCCATCGCAAATGAT 58.380 37.500 0.00 0.00 0.00 2.45
1913 2089 6.061441 TGTATTACCTCCATCGCAAATGATT 58.939 36.000 0.00 0.00 0.00 2.57
1914 2090 6.545666 TGTATTACCTCCATCGCAAATGATTT 59.454 34.615 0.00 0.00 0.00 2.17
1915 2091 3.788333 ACCTCCATCGCAAATGATTTG 57.212 42.857 13.32 13.32 43.44 2.32
1916 2092 3.091545 ACCTCCATCGCAAATGATTTGT 58.908 40.909 18.12 0.00 42.56 2.83
1917 2093 3.511146 ACCTCCATCGCAAATGATTTGTT 59.489 39.130 18.12 2.66 42.56 2.83
1918 2094 4.107622 CCTCCATCGCAAATGATTTGTTC 58.892 43.478 18.12 3.04 42.56 3.18
1919 2095 4.380761 CCTCCATCGCAAATGATTTGTTCA 60.381 41.667 18.12 4.29 42.56 3.18
1920 2096 4.735985 TCCATCGCAAATGATTTGTTCAG 58.264 39.130 18.12 8.58 42.56 3.02
1921 2097 4.458642 TCCATCGCAAATGATTTGTTCAGA 59.541 37.500 18.12 12.81 42.56 3.27
1922 2098 4.560035 CCATCGCAAATGATTTGTTCAGAC 59.440 41.667 18.12 1.04 42.56 3.51
1923 2099 4.827304 TCGCAAATGATTTGTTCAGACA 57.173 36.364 18.12 0.00 42.56 3.41
1924 2100 4.536065 TCGCAAATGATTTGTTCAGACAC 58.464 39.130 18.12 0.00 42.56 3.67
1925 2101 3.358700 CGCAAATGATTTGTTCAGACACG 59.641 43.478 18.12 7.63 42.56 4.49
1926 2102 3.670055 GCAAATGATTTGTTCAGACACGG 59.330 43.478 18.12 0.00 42.56 4.94
1927 2103 4.556501 GCAAATGATTTGTTCAGACACGGA 60.557 41.667 18.12 0.00 42.56 4.69
1928 2104 5.702865 CAAATGATTTGTTCAGACACGGAT 58.297 37.500 9.67 0.00 37.89 4.18
1929 2105 6.622679 GCAAATGATTTGTTCAGACACGGATA 60.623 38.462 18.12 0.00 42.56 2.59
1930 2106 7.475015 CAAATGATTTGTTCAGACACGGATAT 58.525 34.615 9.67 0.00 37.89 1.63
1931 2107 8.611757 CAAATGATTTGTTCAGACACGGATATA 58.388 33.333 9.67 0.00 37.89 0.86
1932 2108 8.908786 AATGATTTGTTCAGACACGGATATAT 57.091 30.769 0.00 0.00 37.89 0.86
1933 2109 7.946655 TGATTTGTTCAGACACGGATATATC 57.053 36.000 3.96 3.96 34.98 1.63
1934 2110 7.726216 TGATTTGTTCAGACACGGATATATCT 58.274 34.615 12.42 0.00 34.98 1.98
1935 2111 7.653311 TGATTTGTTCAGACACGGATATATCTG 59.347 37.037 18.34 18.34 39.99 2.90
1936 2112 6.709018 TTGTTCAGACACGGATATATCTGA 57.291 37.500 25.28 12.08 44.46 3.27
1937 2113 6.073327 TGTTCAGACACGGATATATCTGAC 57.927 41.667 25.28 15.81 45.49 3.51
1938 2114 5.592688 TGTTCAGACACGGATATATCTGACA 59.407 40.000 25.28 14.91 45.49 3.58
1939 2115 5.690997 TCAGACACGGATATATCTGACAC 57.309 43.478 25.28 15.24 41.99 3.67
1940 2116 5.377478 TCAGACACGGATATATCTGACACT 58.623 41.667 25.28 16.82 41.99 3.55
1941 2117 6.531021 TCAGACACGGATATATCTGACACTA 58.469 40.000 25.28 6.01 41.99 2.74
1942 2118 6.996282 TCAGACACGGATATATCTGACACTAA 59.004 38.462 25.28 6.89 41.99 2.24
1943 2119 7.501225 TCAGACACGGATATATCTGACACTAAA 59.499 37.037 25.28 10.63 41.99 1.85
1944 2120 8.135529 CAGACACGGATATATCTGACACTAAAA 58.864 37.037 25.28 0.00 40.92 1.52
1945 2121 8.136165 AGACACGGATATATCTGACACTAAAAC 58.864 37.037 25.28 8.01 36.97 2.43
1946 2122 7.778083 ACACGGATATATCTGACACTAAAACA 58.222 34.615 25.28 0.00 36.97 2.83
1947 2123 8.421784 ACACGGATATATCTGACACTAAAACAT 58.578 33.333 25.28 0.00 36.97 2.71
1948 2124 8.703336 CACGGATATATCTGACACTAAAACATG 58.297 37.037 25.28 7.15 36.97 3.21
1949 2125 7.385205 ACGGATATATCTGACACTAAAACATGC 59.615 37.037 25.28 0.00 36.97 4.06
1950 2126 7.148573 CGGATATATCTGACACTAAAACATGCC 60.149 40.741 15.44 0.00 35.13 4.40
1951 2127 7.880195 GGATATATCTGACACTAAAACATGCCT 59.120 37.037 12.42 0.00 0.00 4.75
1952 2128 9.929180 GATATATCTGACACTAAAACATGCCTA 57.071 33.333 5.42 0.00 0.00 3.93
1955 2131 7.944729 ATCTGACACTAAAACATGCCTAAAT 57.055 32.000 0.00 0.00 0.00 1.40
1957 2133 8.263940 TCTGACACTAAAACATGCCTAAATAC 57.736 34.615 0.00 0.00 0.00 1.89
1958 2134 7.880713 TCTGACACTAAAACATGCCTAAATACA 59.119 33.333 0.00 0.00 0.00 2.29
1959 2135 8.574251 TGACACTAAAACATGCCTAAATACAT 57.426 30.769 0.00 0.00 0.00 2.29
1960 2136 8.673711 TGACACTAAAACATGCCTAAATACATC 58.326 33.333 0.00 0.00 0.00 3.06
1961 2137 7.693952 ACACTAAAACATGCCTAAATACATCG 58.306 34.615 0.00 0.00 0.00 3.84
1962 2138 7.132213 CACTAAAACATGCCTAAATACATCGG 58.868 38.462 0.00 0.00 0.00 4.18
1963 2139 6.826741 ACTAAAACATGCCTAAATACATCGGT 59.173 34.615 0.00 0.00 0.00 4.69
1964 2140 7.988599 ACTAAAACATGCCTAAATACATCGGTA 59.011 33.333 0.00 0.00 0.00 4.02
1965 2141 6.613755 AAACATGCCTAAATACATCGGTAC 57.386 37.500 0.00 0.00 30.94 3.34
1966 2142 5.284861 ACATGCCTAAATACATCGGTACA 57.715 39.130 0.00 0.00 30.94 2.90
1967 2143 5.865085 ACATGCCTAAATACATCGGTACAT 58.135 37.500 0.00 0.00 30.94 2.29
1968 2144 6.999950 ACATGCCTAAATACATCGGTACATA 58.000 36.000 0.00 0.00 30.94 2.29
1969 2145 7.097192 ACATGCCTAAATACATCGGTACATAG 58.903 38.462 0.00 0.00 30.94 2.23
1970 2146 6.904463 TGCCTAAATACATCGGTACATAGA 57.096 37.500 0.00 0.00 30.94 1.98
1971 2147 6.684686 TGCCTAAATACATCGGTACATAGAC 58.315 40.000 0.00 0.00 30.94 2.59
1972 2148 6.265876 TGCCTAAATACATCGGTACATAGACA 59.734 38.462 0.00 0.00 30.94 3.41
1973 2149 7.149973 GCCTAAATACATCGGTACATAGACAA 58.850 38.462 0.00 0.00 30.94 3.18
1974 2150 7.654520 GCCTAAATACATCGGTACATAGACAAA 59.345 37.037 0.00 0.00 30.94 2.83
1975 2151 9.706691 CCTAAATACATCGGTACATAGACAAAT 57.293 33.333 0.00 0.00 30.94 2.32
1982 2158 9.095065 ACATCGGTACATAGACAAATCTAAAAC 57.905 33.333 0.00 0.00 40.88 2.43
1983 2159 9.093970 CATCGGTACATAGACAAATCTAAAACA 57.906 33.333 0.00 0.00 40.88 2.83
1984 2160 9.661563 ATCGGTACATAGACAAATCTAAAACAA 57.338 29.630 0.00 0.00 40.88 2.83
1985 2161 9.491675 TCGGTACATAGACAAATCTAAAACAAA 57.508 29.630 0.00 0.00 40.88 2.83
2001 2177 9.079833 TCTAAAACAAATAATTCTAGACGACGG 57.920 33.333 0.00 0.00 0.00 4.79
2002 2178 6.657836 AAACAAATAATTCTAGACGACGGG 57.342 37.500 0.00 0.00 0.00 5.28
2003 2179 5.587388 ACAAATAATTCTAGACGACGGGA 57.413 39.130 0.00 0.00 0.00 5.14
2004 2180 5.589192 ACAAATAATTCTAGACGACGGGAG 58.411 41.667 0.00 0.00 0.00 4.30
2018 2194 2.613691 ACGGGAGTAGCAAATAACACG 58.386 47.619 0.00 0.00 44.60 4.49
2019 2195 1.326548 CGGGAGTAGCAAATAACACGC 59.673 52.381 0.00 0.00 0.00 5.34
2020 2196 2.352388 GGGAGTAGCAAATAACACGCA 58.648 47.619 0.00 0.00 0.00 5.24
2021 2197 2.745281 GGGAGTAGCAAATAACACGCAA 59.255 45.455 0.00 0.00 0.00 4.85
2023 2199 3.682858 GGAGTAGCAAATAACACGCAAGA 59.317 43.478 0.00 0.00 43.62 3.02
2024 2200 4.201724 GGAGTAGCAAATAACACGCAAGAG 60.202 45.833 0.00 0.00 43.62 2.85
2025 2201 2.619013 AGCAAATAACACGCAAGAGC 57.381 45.000 0.00 0.00 43.62 4.09
2026 2202 2.154462 AGCAAATAACACGCAAGAGCT 58.846 42.857 0.00 0.00 43.62 4.09
2027 2203 2.554032 AGCAAATAACACGCAAGAGCTT 59.446 40.909 0.00 0.00 43.62 3.74
2028 2204 3.751175 AGCAAATAACACGCAAGAGCTTA 59.249 39.130 0.00 0.00 43.62 3.09
2029 2205 4.396166 AGCAAATAACACGCAAGAGCTTAT 59.604 37.500 0.00 0.00 43.62 1.73
2030 2206 5.095490 GCAAATAACACGCAAGAGCTTATT 58.905 37.500 0.00 0.00 43.62 1.40
2031 2207 5.572896 GCAAATAACACGCAAGAGCTTATTT 59.427 36.000 0.00 0.00 43.62 1.40
2032 2208 6.237306 GCAAATAACACGCAAGAGCTTATTTC 60.237 38.462 0.00 0.00 43.62 2.17
2033 2209 3.831715 AACACGCAAGAGCTTATTTCC 57.168 42.857 0.00 0.00 43.62 3.13
2034 2210 3.059352 ACACGCAAGAGCTTATTTCCT 57.941 42.857 0.00 0.00 43.62 3.36
2035 2211 4.202245 ACACGCAAGAGCTTATTTCCTA 57.798 40.909 0.00 0.00 43.62 2.94
2036 2212 4.770795 ACACGCAAGAGCTTATTTCCTAT 58.229 39.130 0.00 0.00 43.62 2.57
2037 2213 5.186198 ACACGCAAGAGCTTATTTCCTATT 58.814 37.500 0.00 0.00 43.62 1.73
2041 2217 5.506317 CGCAAGAGCTTATTTCCTATTTGGG 60.506 44.000 0.00 0.00 43.02 4.12
2045 2221 6.368805 AGAGCTTATTTCCTATTTGGGGAAG 58.631 40.000 0.00 0.00 42.79 3.46
2049 2225 7.457852 AGCTTATTTCCTATTTGGGGAAGTTTT 59.542 33.333 0.00 0.00 42.79 2.43
2052 2228 7.625498 ATTTCCTATTTGGGGAAGTTTTTGA 57.375 32.000 0.00 0.00 42.79 2.69
2068 2244 7.085052 AGTTTTTGACTCACCAGAAGTAAAC 57.915 36.000 0.00 0.00 31.20 2.01
2069 2245 6.657541 AGTTTTTGACTCACCAGAAGTAAACA 59.342 34.615 0.00 0.00 31.20 2.83
2074 2250 5.991606 TGACTCACCAGAAGTAAACATCTTG 59.008 40.000 0.00 0.00 0.00 3.02
2075 2251 6.174720 ACTCACCAGAAGTAAACATCTTGA 57.825 37.500 0.00 0.00 0.00 3.02
2077 2253 7.907389 ACTCACCAGAAGTAAACATCTTGATA 58.093 34.615 0.00 0.00 0.00 2.15
2078 2254 8.543774 ACTCACCAGAAGTAAACATCTTGATAT 58.456 33.333 0.00 0.00 0.00 1.63
2079 2255 8.722480 TCACCAGAAGTAAACATCTTGATATG 57.278 34.615 0.00 0.00 0.00 1.78
2081 2257 9.166173 CACCAGAAGTAAACATCTTGATATGAA 57.834 33.333 0.00 0.00 0.00 2.57
2082 2258 9.388506 ACCAGAAGTAAACATCTTGATATGAAG 57.611 33.333 0.00 0.00 0.00 3.02
2083 2259 9.388506 CCAGAAGTAAACATCTTGATATGAAGT 57.611 33.333 1.69 0.00 0.00 3.01
2104 2280 9.772973 TGAAGTCTATTTTTACTTTGTGCTAGA 57.227 29.630 0.00 0.00 36.10 2.43
2106 2282 8.549338 AGTCTATTTTTACTTTGTGCTAGACC 57.451 34.615 0.00 0.00 36.23 3.85
2120 2448 3.815401 TGCTAGACCAAAAAGAGTTCTGC 59.185 43.478 0.00 0.00 0.00 4.26
2136 2464 3.576078 TCTGCACCTCTTCCTTTTTCA 57.424 42.857 0.00 0.00 0.00 2.69
2159 2487 2.443887 CCCAAACTGGCAGAAACATG 57.556 50.000 23.66 11.45 35.79 3.21
2168 2530 2.166870 TGGCAGAAACATGAATCATGGC 59.833 45.455 24.99 17.70 45.16 4.40
2175 2537 3.109044 ACATGAATCATGGCGAGAGAG 57.891 47.619 24.99 0.00 45.16 3.20
2184 2546 2.169832 TGGCGAGAGAGAAAAGTTGG 57.830 50.000 0.00 0.00 0.00 3.77
2187 2549 2.480802 GGCGAGAGAGAAAAGTTGGAAC 59.519 50.000 0.00 0.00 0.00 3.62
2195 2557 2.344521 AAAAGTTGGAACGGCGTGCC 62.345 55.000 30.38 30.38 0.00 5.01
2208 2572 2.496817 GTGCCTCCTCCTAGCACG 59.503 66.667 0.00 0.00 46.43 5.34
2209 2573 2.052690 GTGCCTCCTCCTAGCACGA 61.053 63.158 0.00 0.00 46.43 4.35
2214 2578 1.825474 CCTCCTCCTAGCACGAAAAGA 59.175 52.381 0.00 0.00 0.00 2.52
2228 2592 5.149977 CACGAAAAGAAGAATCAAGAAGGC 58.850 41.667 0.00 0.00 0.00 4.35
2236 2600 2.131183 GAATCAAGAAGGCTCGATCCG 58.869 52.381 0.00 0.00 0.00 4.18
2237 2601 1.403814 ATCAAGAAGGCTCGATCCGA 58.596 50.000 0.00 0.00 0.00 4.55
2254 2618 1.660052 CCGATTCATAATTGCGCGTGG 60.660 52.381 8.43 0.00 0.00 4.94
2283 2647 0.678048 GACAGGCACATGAAGGTCCC 60.678 60.000 0.00 0.00 0.00 4.46
2284 2648 1.379916 CAGGCACATGAAGGTCCCA 59.620 57.895 0.00 0.00 0.00 4.37
2312 2676 4.768968 ACAGCCAGCAGAAAATAGAAACAT 59.231 37.500 0.00 0.00 0.00 2.71
2354 2718 2.168521 TGATCTCCTCCGTTTCATGACC 59.831 50.000 0.00 0.00 0.00 4.02
2360 2724 0.323629 TCCGTTTCATGACCCTGTCC 59.676 55.000 0.00 0.00 0.00 4.02
2402 2766 2.430244 CGAGTTGGACGTGGACCG 60.430 66.667 0.00 0.00 44.03 4.79
2403 2767 2.737376 GAGTTGGACGTGGACCGC 60.737 66.667 0.00 0.00 41.42 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.133945 GGCTCTCCTTCCTTTCCATCC 60.134 57.143 0.00 0.00 0.00 3.51
26 27 2.839228 ACATAAACTCCAGGCTCTCCT 58.161 47.619 0.00 0.00 45.66 3.69
33 34 8.778358 GCATTTCTCTATTACATAAACTCCAGG 58.222 37.037 0.00 0.00 0.00 4.45
43 44 6.558775 TCCCTGGTAGCATTTCTCTATTACAT 59.441 38.462 0.00 0.00 0.00 2.29
47 48 4.721776 TGTCCCTGGTAGCATTTCTCTATT 59.278 41.667 0.00 0.00 0.00 1.73
49 50 3.719871 TGTCCCTGGTAGCATTTCTCTA 58.280 45.455 0.00 0.00 0.00 2.43
69 70 1.869767 GGCTATCCGCTCATGTCTTTG 59.130 52.381 0.00 0.00 39.13 2.77
87 88 1.975680 TCTTTCACCCCTATATCCGGC 59.024 52.381 0.00 0.00 0.00 6.13
88 89 4.699925 TTTCTTTCACCCCTATATCCGG 57.300 45.455 0.00 0.00 0.00 5.14
89 90 5.473504 CCAATTTCTTTCACCCCTATATCCG 59.526 44.000 0.00 0.00 0.00 4.18
90 91 6.610830 TCCAATTTCTTTCACCCCTATATCC 58.389 40.000 0.00 0.00 0.00 2.59
92 93 7.882755 TCTTCCAATTTCTTTCACCCCTATAT 58.117 34.615 0.00 0.00 0.00 0.86
93 94 7.278724 TCTTCCAATTTCTTTCACCCCTATA 57.721 36.000 0.00 0.00 0.00 1.31
94 95 6.152638 TCTTCCAATTTCTTTCACCCCTAT 57.847 37.500 0.00 0.00 0.00 2.57
95 96 5.592587 TCTTCCAATTTCTTTCACCCCTA 57.407 39.130 0.00 0.00 0.00 3.53
96 97 4.469469 TCTTCCAATTTCTTTCACCCCT 57.531 40.909 0.00 0.00 0.00 4.79
101 102 8.891720 CCAACATTTTTCTTCCAATTTCTTTCA 58.108 29.630 0.00 0.00 0.00 2.69
103 104 7.338957 TGCCAACATTTTTCTTCCAATTTCTTT 59.661 29.630 0.00 0.00 0.00 2.52
141 146 9.194972 TCCACTGGCTATATCATCTAAGAATAG 57.805 37.037 0.00 0.00 0.00 1.73
142 147 9.720874 ATCCACTGGCTATATCATCTAAGAATA 57.279 33.333 0.00 0.00 0.00 1.75
143 148 8.621126 ATCCACTGGCTATATCATCTAAGAAT 57.379 34.615 0.00 0.00 0.00 2.40
161 166 8.393366 CAATAAAGAGATGTGTACAATCCACTG 58.607 37.037 0.00 0.00 33.92 3.66
218 250 4.745125 CGAACTACCAATCATCATTACGCT 59.255 41.667 0.00 0.00 0.00 5.07
220 252 4.745125 AGCGAACTACCAATCATCATTACG 59.255 41.667 0.00 0.00 0.00 3.18
253 285 2.441410 TGCAATTGTATTTCGGCTCCA 58.559 42.857 7.40 0.00 0.00 3.86
273 305 1.348696 CAAAGCCAGCCAAGGGAAAAT 59.651 47.619 0.00 0.00 0.00 1.82
274 306 0.758123 CAAAGCCAGCCAAGGGAAAA 59.242 50.000 0.00 0.00 0.00 2.29
278 310 1.761500 AAAGCAAAGCCAGCCAAGGG 61.761 55.000 0.00 0.00 0.00 3.95
283 315 0.964700 AAGAGAAAGCAAAGCCAGCC 59.035 50.000 0.00 0.00 0.00 4.85
287 319 0.037882 GCCCAAGAGAAAGCAAAGCC 60.038 55.000 0.00 0.00 0.00 4.35
288 320 0.037882 GGCCCAAGAGAAAGCAAAGC 60.038 55.000 0.00 0.00 0.00 3.51
289 321 0.605083 GGGCCCAAGAGAAAGCAAAG 59.395 55.000 19.95 0.00 0.00 2.77
290 322 0.188342 AGGGCCCAAGAGAAAGCAAA 59.812 50.000 27.56 0.00 0.00 3.68
291 323 0.251341 GAGGGCCCAAGAGAAAGCAA 60.251 55.000 27.56 0.00 0.00 3.91
292 324 1.136329 AGAGGGCCCAAGAGAAAGCA 61.136 55.000 27.56 0.00 0.00 3.91
293 325 0.679321 CAGAGGGCCCAAGAGAAAGC 60.679 60.000 27.56 0.93 0.00 3.51
294 326 0.679321 GCAGAGGGCCCAAGAGAAAG 60.679 60.000 27.56 5.57 36.11 2.62
317 349 2.736144 AACGGTGCGTCTGAATAAGA 57.264 45.000 0.00 0.00 39.99 2.10
330 362 2.663602 CTCTGTCGATGAAGAAACGGTG 59.336 50.000 0.00 0.00 0.00 4.94
333 365 5.004821 CCATAACTCTGTCGATGAAGAAACG 59.995 44.000 0.00 0.00 0.00 3.60
340 372 2.159099 GCCACCATAACTCTGTCGATGA 60.159 50.000 0.00 0.00 0.00 2.92
344 376 0.172578 TCGCCACCATAACTCTGTCG 59.827 55.000 0.00 0.00 0.00 4.35
345 377 2.474816 GATCGCCACCATAACTCTGTC 58.525 52.381 0.00 0.00 0.00 3.51
348 380 0.249489 GCGATCGCCACCATAACTCT 60.249 55.000 29.48 0.00 34.56 3.24
365 397 2.519377 TACCTTTCATATGGACGGCG 57.481 50.000 4.80 4.80 0.00 6.46
366 398 4.067972 TCTTACCTTTCATATGGACGGC 57.932 45.455 6.44 0.00 0.00 5.68
367 399 5.701290 GGAATCTTACCTTTCATATGGACGG 59.299 44.000 4.96 4.96 0.00 4.79
368 400 6.425114 CAGGAATCTTACCTTTCATATGGACG 59.575 42.308 2.13 0.00 35.35 4.79
371 403 6.302269 AGCAGGAATCTTACCTTTCATATGG 58.698 40.000 2.13 0.00 35.35 2.74
396 428 8.043113 TGATGAACATAGCAGAGAAAATAGTGT 58.957 33.333 0.00 0.00 0.00 3.55
400 432 9.842775 AAGATGATGAACATAGCAGAGAAAATA 57.157 29.630 0.00 0.00 39.56 1.40
409 441 8.733458 GGCATAATAAAGATGATGAACATAGCA 58.267 33.333 0.00 0.00 39.56 3.49
418 450 4.152223 TGCGTCGGCATAATAAAGATGATG 59.848 41.667 0.00 0.00 46.21 3.07
457 535 6.183347 CAAGAGGATCCACAAAGAGGTTTAT 58.817 40.000 15.82 0.00 33.66 1.40
460 538 3.395941 ACAAGAGGATCCACAAAGAGGTT 59.604 43.478 15.82 0.00 33.66 3.50
462 540 3.244700 ACACAAGAGGATCCACAAAGAGG 60.245 47.826 15.82 0.00 33.66 3.69
463 541 4.013267 ACACAAGAGGATCCACAAAGAG 57.987 45.455 15.82 3.29 33.66 2.85
465 543 4.023707 GTCAACACAAGAGGATCCACAAAG 60.024 45.833 15.82 4.33 33.66 2.77
469 547 2.808543 GTGTCAACACAAGAGGATCCAC 59.191 50.000 15.82 8.01 45.75 4.02
470 548 3.126001 GTGTCAACACAAGAGGATCCA 57.874 47.619 15.82 0.00 45.75 3.41
495 581 3.374367 CCTGATCTGATGTGAAGTGCAAG 59.626 47.826 0.38 0.00 0.00 4.01
497 583 2.355412 CCCTGATCTGATGTGAAGTGCA 60.355 50.000 0.38 0.00 0.00 4.57
512 599 0.921896 ATGCACTAGTTGGCCCTGAT 59.078 50.000 0.00 0.00 0.00 2.90
513 600 0.253044 GATGCACTAGTTGGCCCTGA 59.747 55.000 0.00 0.00 0.00 3.86
514 601 0.749454 GGATGCACTAGTTGGCCCTG 60.749 60.000 0.00 0.00 0.00 4.45
515 602 1.207488 TGGATGCACTAGTTGGCCCT 61.207 55.000 0.00 0.00 0.00 5.19
516 603 0.106519 ATGGATGCACTAGTTGGCCC 60.107 55.000 0.00 0.00 0.00 5.80
517 604 1.767759 AATGGATGCACTAGTTGGCC 58.232 50.000 0.00 0.00 0.00 5.36
555 642 3.809832 CACTACAGGGCCAAGATAATTCG 59.190 47.826 6.18 0.00 0.00 3.34
561 648 2.311287 CCCACTACAGGGCCAAGAT 58.689 57.895 6.18 0.00 43.10 2.40
596 683 1.181098 AACTGTGCCCATGAGCAACC 61.181 55.000 2.39 0.00 46.19 3.77
607 694 0.957888 GAAGAGAGCCCAACTGTGCC 60.958 60.000 0.00 0.00 0.00 5.01
639 726 3.001939 GCCGGTAATACTTTTCCATCACG 59.998 47.826 1.90 0.00 0.00 4.35
697 784 5.180271 ACGTTCAGTTAAAACAGGACAAGA 58.820 37.500 0.00 0.00 0.00 3.02
699 786 6.256321 GTCTACGTTCAGTTAAAACAGGACAA 59.744 38.462 0.00 0.00 0.00 3.18
703 790 7.935338 TTAGTCTACGTTCAGTTAAAACAGG 57.065 36.000 0.00 0.00 0.00 4.00
714 801 6.711194 CCTATGGAGAGATTAGTCTACGTTCA 59.289 42.308 0.00 0.00 33.97 3.18
730 817 9.624373 CTACTACTACTAACAAACCTATGGAGA 57.376 37.037 0.00 0.00 0.00 3.71
747 834 7.017056 TCTCCTCCCATAACCTACTACTACTAC 59.983 44.444 0.00 0.00 0.00 2.73
751 838 5.673574 TGTCTCCTCCCATAACCTACTACTA 59.326 44.000 0.00 0.00 0.00 1.82
765 852 3.086600 CAGGGCCTGTCTCCTCCC 61.087 72.222 25.74 0.00 39.05 4.30
825 912 0.903942 AAGGGACGGCCATTAACGTA 59.096 50.000 4.75 0.00 44.24 3.57
847 934 6.531594 CCTGTGCGTATGTATATATGTGAAGG 59.468 42.308 0.00 2.40 0.00 3.46
848 935 7.312899 TCCTGTGCGTATGTATATATGTGAAG 58.687 38.462 0.00 0.00 0.00 3.02
876 963 2.278330 GGTGCTTTGCCTTCCCAGG 61.278 63.158 0.00 0.00 44.28 4.45
878 965 1.075674 TTGGTGCTTTGCCTTCCCA 60.076 52.632 0.00 0.00 0.00 4.37
881 968 0.315251 GAGGTTGGTGCTTTGCCTTC 59.685 55.000 0.00 0.00 0.00 3.46
927 1026 3.261643 TGCAAGCTATGGAGAAGAGAACA 59.738 43.478 0.00 0.00 0.00 3.18
956 1055 2.010817 GCGCAACGGACAAGCTTTG 61.011 57.895 0.30 0.00 0.00 2.77
957 1056 2.331451 GCGCAACGGACAAGCTTT 59.669 55.556 0.30 0.00 0.00 3.51
977 1076 2.689034 CCTGTCCACCTCCCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
987 1086 2.184020 CTTCCATCCGCACCTGTCCA 62.184 60.000 0.00 0.00 0.00 4.02
991 1090 2.124570 CCCTTCCATCCGCACCTG 60.125 66.667 0.00 0.00 0.00 4.00
996 1095 2.361104 TGCAACCCTTCCATCCGC 60.361 61.111 0.00 0.00 0.00 5.54
998 1097 0.620556 TCTCTGCAACCCTTCCATCC 59.379 55.000 0.00 0.00 0.00 3.51
1026 1129 1.737008 GCCGGACCGTCTGAAAGTC 60.737 63.158 13.94 0.83 33.76 3.01
1442 1545 1.450531 CCATGGCCCGATCAAGCTTC 61.451 60.000 0.00 0.00 0.00 3.86
1446 1549 1.825191 CCACCATGGCCCGATCAAG 60.825 63.158 13.04 0.00 0.00 3.02
1465 1568 2.133742 AAACACAGCTCGCATGGCAC 62.134 55.000 0.00 0.00 0.00 5.01
1468 1575 3.001634 CAGTATAAACACAGCTCGCATGG 59.998 47.826 0.00 0.00 0.00 3.66
1497 1604 9.547279 ACCAATATCAGTAGTATACCATCATCA 57.453 33.333 0.00 0.00 44.47 3.07
1505 1612 9.609346 ACAAACCAACCAATATCAGTAGTATAC 57.391 33.333 0.00 0.00 43.47 1.47
1554 1664 2.159867 CGTATGGACTACTAGCTACGCG 60.160 54.545 3.53 3.53 0.00 6.01
1560 1670 3.003482 CCTGACACGTATGGACTACTAGC 59.997 52.174 0.00 0.00 0.00 3.42
1561 1671 4.197750 ACCTGACACGTATGGACTACTAG 58.802 47.826 0.00 0.00 0.00 2.57
1562 1672 4.226427 ACCTGACACGTATGGACTACTA 57.774 45.455 0.00 0.00 0.00 1.82
1563 1673 3.083122 ACCTGACACGTATGGACTACT 57.917 47.619 0.00 0.00 0.00 2.57
1570 1680 4.158025 AGAGGAACTAACCTGACACGTATG 59.842 45.833 0.00 0.00 41.55 2.39
1613 1723 1.202510 GCTCAGCTCACGGATCTGAAT 60.203 52.381 9.00 0.00 34.98 2.57
1637 1747 1.417517 ACACCACAGATCTCAACAGCA 59.582 47.619 0.00 0.00 0.00 4.41
1642 1752 4.155709 AGAGAGAACACCACAGATCTCAA 58.844 43.478 0.00 0.00 40.57 3.02
1654 1764 2.999355 GCACCAGATCAAGAGAGAACAC 59.001 50.000 0.00 0.00 0.00 3.32
1661 1771 1.022735 GCCATGCACCAGATCAAGAG 58.977 55.000 0.00 0.00 0.00 2.85
1673 1783 2.240918 AGAGGGGAAAGGCCATGCA 61.241 57.895 5.01 0.00 38.95 3.96
1704 1836 2.126467 CAACCAATCAAGCAACCAACG 58.874 47.619 0.00 0.00 0.00 4.10
1714 1846 2.957680 ACACTCACATGCAACCAATCAA 59.042 40.909 0.00 0.00 0.00 2.57
1715 1847 2.293955 CACACTCACATGCAACCAATCA 59.706 45.455 0.00 0.00 0.00 2.57
1716 1848 2.553602 TCACACTCACATGCAACCAATC 59.446 45.455 0.00 0.00 0.00 2.67
1717 1849 2.555325 CTCACACTCACATGCAACCAAT 59.445 45.455 0.00 0.00 0.00 3.16
1718 1850 1.948834 CTCACACTCACATGCAACCAA 59.051 47.619 0.00 0.00 0.00 3.67
1719 1851 1.596603 CTCACACTCACATGCAACCA 58.403 50.000 0.00 0.00 0.00 3.67
1720 1852 0.877071 CCTCACACTCACATGCAACC 59.123 55.000 0.00 0.00 0.00 3.77
1721 1853 1.265095 CACCTCACACTCACATGCAAC 59.735 52.381 0.00 0.00 0.00 4.17
1745 1877 0.235665 CAACACGGCAGCAACAGTAG 59.764 55.000 0.00 0.00 0.00 2.57
1746 1878 1.781025 GCAACACGGCAGCAACAGTA 61.781 55.000 0.00 0.00 0.00 2.74
1749 1881 3.136791 TGCAACACGGCAGCAACA 61.137 55.556 0.00 0.00 39.25 3.33
1756 1888 0.378257 CTCCATACATGCAACACGGC 59.622 55.000 0.00 0.00 0.00 5.68
1757 1889 1.737838 ACTCCATACATGCAACACGG 58.262 50.000 0.00 0.00 0.00 4.94
1758 1890 2.728846 GCAACTCCATACATGCAACACG 60.729 50.000 0.00 0.00 38.63 4.49
1759 1891 2.228582 TGCAACTCCATACATGCAACAC 59.771 45.455 0.00 0.00 45.04 3.32
1794 1934 1.077915 CAATGTTTTGCCGCCCAATC 58.922 50.000 0.00 0.00 32.49 2.67
1818 1958 0.244450 CATGAACACACATGCCCCAC 59.756 55.000 0.00 0.00 40.54 4.61
1843 1984 2.032549 CGAGGAAATTCGCCATAGCTTG 60.033 50.000 0.00 0.00 36.60 4.01
1844 1985 2.213499 CGAGGAAATTCGCCATAGCTT 58.787 47.619 0.00 0.00 36.60 3.74
1845 1986 1.139058 ACGAGGAAATTCGCCATAGCT 59.861 47.619 0.00 0.00 44.15 3.32
1853 2029 1.726853 AGCAAGGACGAGGAAATTCG 58.273 50.000 0.00 0.00 45.70 3.34
1856 2032 2.162681 CCAAAGCAAGGACGAGGAAAT 58.837 47.619 0.00 0.00 0.00 2.17
1860 2036 1.740025 GATTCCAAAGCAAGGACGAGG 59.260 52.381 0.00 0.00 34.19 4.63
1861 2037 2.704572 AGATTCCAAAGCAAGGACGAG 58.295 47.619 0.00 0.00 34.19 4.18
1863 2039 3.923017 AAAGATTCCAAAGCAAGGACG 57.077 42.857 0.00 0.00 34.19 4.79
1864 2040 5.459536 AGAAAAGATTCCAAAGCAAGGAC 57.540 39.130 0.00 0.00 36.12 3.85
1866 2042 6.539826 ACAAAAGAAAAGATTCCAAAGCAAGG 59.460 34.615 0.00 0.00 36.12 3.61
1867 2043 7.543947 ACAAAAGAAAAGATTCCAAAGCAAG 57.456 32.000 0.00 0.00 36.12 4.01
1868 2044 9.612066 AATACAAAAGAAAAGATTCCAAAGCAA 57.388 25.926 0.00 0.00 36.12 3.91
1874 2050 9.020731 GGAGGTAATACAAAAGAAAAGATTCCA 57.979 33.333 0.00 0.00 36.12 3.53
1879 2055 7.148306 GCGATGGAGGTAATACAAAAGAAAAGA 60.148 37.037 0.00 0.00 0.00 2.52
1880 2056 6.967199 GCGATGGAGGTAATACAAAAGAAAAG 59.033 38.462 0.00 0.00 0.00 2.27
1881 2057 6.431543 TGCGATGGAGGTAATACAAAAGAAAA 59.568 34.615 0.00 0.00 0.00 2.29
1882 2058 5.941058 TGCGATGGAGGTAATACAAAAGAAA 59.059 36.000 0.00 0.00 0.00 2.52
1883 2059 5.492895 TGCGATGGAGGTAATACAAAAGAA 58.507 37.500 0.00 0.00 0.00 2.52
1884 2060 5.092554 TGCGATGGAGGTAATACAAAAGA 57.907 39.130 0.00 0.00 0.00 2.52
1885 2061 5.811399 TTGCGATGGAGGTAATACAAAAG 57.189 39.130 0.00 0.00 0.00 2.27
1886 2062 6.375736 TCATTTGCGATGGAGGTAATACAAAA 59.624 34.615 0.00 0.00 30.47 2.44
1887 2063 5.883115 TCATTTGCGATGGAGGTAATACAAA 59.117 36.000 0.00 0.00 0.00 2.83
1888 2064 5.432645 TCATTTGCGATGGAGGTAATACAA 58.567 37.500 0.00 0.00 0.00 2.41
1889 2065 5.029807 TCATTTGCGATGGAGGTAATACA 57.970 39.130 0.00 0.00 0.00 2.29
1890 2066 6.560253 AATCATTTGCGATGGAGGTAATAC 57.440 37.500 0.00 0.00 0.00 1.89
1891 2067 6.545666 ACAAATCATTTGCGATGGAGGTAATA 59.454 34.615 10.21 0.00 44.39 0.98
1892 2068 5.360714 ACAAATCATTTGCGATGGAGGTAAT 59.639 36.000 10.21 0.00 44.39 1.89
1893 2069 4.704540 ACAAATCATTTGCGATGGAGGTAA 59.295 37.500 10.21 0.00 44.39 2.85
1894 2070 4.269183 ACAAATCATTTGCGATGGAGGTA 58.731 39.130 10.21 0.00 44.39 3.08
1895 2071 3.091545 ACAAATCATTTGCGATGGAGGT 58.908 40.909 10.21 0.00 44.39 3.85
1896 2072 3.788333 ACAAATCATTTGCGATGGAGG 57.212 42.857 10.21 0.00 44.39 4.30
1897 2073 4.735985 TGAACAAATCATTTGCGATGGAG 58.264 39.130 10.21 0.00 44.39 3.86
1898 2074 4.458642 TCTGAACAAATCATTTGCGATGGA 59.541 37.500 10.21 0.46 44.39 3.41
1899 2075 4.560035 GTCTGAACAAATCATTTGCGATGG 59.440 41.667 10.21 0.00 44.39 3.51
1900 2076 5.060077 GTGTCTGAACAAATCATTTGCGATG 59.940 40.000 10.21 0.00 44.39 3.84
1901 2077 5.156355 GTGTCTGAACAAATCATTTGCGAT 58.844 37.500 10.21 0.00 44.39 4.58
1902 2078 4.536065 GTGTCTGAACAAATCATTTGCGA 58.464 39.130 10.21 0.00 44.39 5.10
1903 2079 3.358700 CGTGTCTGAACAAATCATTTGCG 59.641 43.478 10.21 0.00 44.39 4.85
1904 2080 3.670055 CCGTGTCTGAACAAATCATTTGC 59.330 43.478 10.21 0.00 44.39 3.68
1905 2081 5.107109 TCCGTGTCTGAACAAATCATTTG 57.893 39.130 8.67 8.67 45.95 2.32
1906 2082 5.964958 ATCCGTGTCTGAACAAATCATTT 57.035 34.783 0.00 0.00 37.44 2.32
1907 2083 8.908786 ATATATCCGTGTCTGAACAAATCATT 57.091 30.769 0.00 0.00 37.44 2.57
1908 2084 8.370940 AGATATATCCGTGTCTGAACAAATCAT 58.629 33.333 9.18 0.00 37.44 2.45
1909 2085 7.653311 CAGATATATCCGTGTCTGAACAAATCA 59.347 37.037 9.18 0.00 40.30 2.57
1910 2086 7.867909 TCAGATATATCCGTGTCTGAACAAATC 59.132 37.037 9.18 0.00 42.81 2.17
1911 2087 7.653713 GTCAGATATATCCGTGTCTGAACAAAT 59.346 37.037 9.18 0.00 45.98 2.32
1912 2088 6.978659 GTCAGATATATCCGTGTCTGAACAAA 59.021 38.462 9.18 0.00 45.98 2.83
1913 2089 6.096282 TGTCAGATATATCCGTGTCTGAACAA 59.904 38.462 9.18 0.00 45.98 2.83
1914 2090 5.592688 TGTCAGATATATCCGTGTCTGAACA 59.407 40.000 9.18 5.02 45.98 3.18
1915 2091 5.915758 GTGTCAGATATATCCGTGTCTGAAC 59.084 44.000 9.18 4.45 45.98 3.18
1916 2092 5.828328 AGTGTCAGATATATCCGTGTCTGAA 59.172 40.000 9.18 0.00 45.98 3.02
1917 2093 5.377478 AGTGTCAGATATATCCGTGTCTGA 58.623 41.667 9.18 3.43 43.34 3.27
1918 2094 5.697473 AGTGTCAGATATATCCGTGTCTG 57.303 43.478 9.18 0.99 39.47 3.51
1919 2095 7.818997 TTTAGTGTCAGATATATCCGTGTCT 57.181 36.000 9.18 5.98 0.00 3.41
1920 2096 7.919091 TGTTTTAGTGTCAGATATATCCGTGTC 59.081 37.037 9.18 1.43 0.00 3.67
1921 2097 7.778083 TGTTTTAGTGTCAGATATATCCGTGT 58.222 34.615 9.18 0.00 0.00 4.49
1922 2098 8.703336 CATGTTTTAGTGTCAGATATATCCGTG 58.297 37.037 9.18 2.60 0.00 4.94
1923 2099 7.385205 GCATGTTTTAGTGTCAGATATATCCGT 59.615 37.037 9.18 0.00 0.00 4.69
1924 2100 7.148573 GGCATGTTTTAGTGTCAGATATATCCG 60.149 40.741 9.18 0.00 0.00 4.18
1925 2101 7.880195 AGGCATGTTTTAGTGTCAGATATATCC 59.120 37.037 9.18 0.00 0.00 2.59
1926 2102 8.839310 AGGCATGTTTTAGTGTCAGATATATC 57.161 34.615 4.42 4.42 0.00 1.63
1929 2105 9.632638 ATTTAGGCATGTTTTAGTGTCAGATAT 57.367 29.630 0.00 0.00 0.00 1.63
1931 2107 7.944729 ATTTAGGCATGTTTTAGTGTCAGAT 57.055 32.000 0.00 0.00 0.00 2.90
1932 2108 7.880713 TGTATTTAGGCATGTTTTAGTGTCAGA 59.119 33.333 0.00 0.00 0.00 3.27
1933 2109 8.039603 TGTATTTAGGCATGTTTTAGTGTCAG 57.960 34.615 0.00 0.00 0.00 3.51
1934 2110 7.987750 TGTATTTAGGCATGTTTTAGTGTCA 57.012 32.000 0.00 0.00 0.00 3.58
1935 2111 7.850982 CGATGTATTTAGGCATGTTTTAGTGTC 59.149 37.037 0.00 0.00 0.00 3.67
1936 2112 7.201696 CCGATGTATTTAGGCATGTTTTAGTGT 60.202 37.037 0.00 0.00 0.00 3.55
1937 2113 7.132213 CCGATGTATTTAGGCATGTTTTAGTG 58.868 38.462 0.00 0.00 0.00 2.74
1938 2114 6.826741 ACCGATGTATTTAGGCATGTTTTAGT 59.173 34.615 0.00 0.00 0.00 2.24
1939 2115 7.259290 ACCGATGTATTTAGGCATGTTTTAG 57.741 36.000 0.00 0.00 0.00 1.85
1940 2116 7.769507 TGTACCGATGTATTTAGGCATGTTTTA 59.230 33.333 0.00 0.00 0.00 1.52
1941 2117 6.600032 TGTACCGATGTATTTAGGCATGTTTT 59.400 34.615 0.00 0.00 0.00 2.43
1942 2118 6.116806 TGTACCGATGTATTTAGGCATGTTT 58.883 36.000 0.00 0.00 0.00 2.83
1943 2119 5.676552 TGTACCGATGTATTTAGGCATGTT 58.323 37.500 0.00 0.00 0.00 2.71
1944 2120 5.284861 TGTACCGATGTATTTAGGCATGT 57.715 39.130 0.00 0.00 0.00 3.21
1945 2121 7.275779 GTCTATGTACCGATGTATTTAGGCATG 59.724 40.741 0.00 0.00 0.00 4.06
1946 2122 7.039293 TGTCTATGTACCGATGTATTTAGGCAT 60.039 37.037 0.00 0.00 30.45 4.40
1947 2123 6.265876 TGTCTATGTACCGATGTATTTAGGCA 59.734 38.462 0.00 0.00 31.76 4.75
1948 2124 6.684686 TGTCTATGTACCGATGTATTTAGGC 58.315 40.000 0.00 0.00 0.00 3.93
1949 2125 9.706691 ATTTGTCTATGTACCGATGTATTTAGG 57.293 33.333 0.00 0.00 0.00 2.69
1956 2132 9.095065 GTTTTAGATTTGTCTATGTACCGATGT 57.905 33.333 0.00 0.00 0.00 3.06
1957 2133 9.093970 TGTTTTAGATTTGTCTATGTACCGATG 57.906 33.333 0.00 0.00 0.00 3.84
1958 2134 9.661563 TTGTTTTAGATTTGTCTATGTACCGAT 57.338 29.630 0.00 0.00 0.00 4.18
1959 2135 9.491675 TTTGTTTTAGATTTGTCTATGTACCGA 57.508 29.630 0.00 0.00 0.00 4.69
1975 2151 9.079833 CCGTCGTCTAGAATTATTTGTTTTAGA 57.920 33.333 0.00 0.00 0.00 2.10
1976 2152 8.325997 CCCGTCGTCTAGAATTATTTGTTTTAG 58.674 37.037 0.00 0.00 0.00 1.85
1977 2153 8.034215 TCCCGTCGTCTAGAATTATTTGTTTTA 58.966 33.333 0.00 0.00 0.00 1.52
1978 2154 6.875195 TCCCGTCGTCTAGAATTATTTGTTTT 59.125 34.615 0.00 0.00 0.00 2.43
1979 2155 6.400568 TCCCGTCGTCTAGAATTATTTGTTT 58.599 36.000 0.00 0.00 0.00 2.83
1980 2156 5.969423 TCCCGTCGTCTAGAATTATTTGTT 58.031 37.500 0.00 0.00 0.00 2.83
1981 2157 5.126707 ACTCCCGTCGTCTAGAATTATTTGT 59.873 40.000 0.00 0.00 0.00 2.83
1982 2158 5.589192 ACTCCCGTCGTCTAGAATTATTTG 58.411 41.667 0.00 0.00 0.00 2.32
1983 2159 5.848833 ACTCCCGTCGTCTAGAATTATTT 57.151 39.130 0.00 0.00 0.00 1.40
1984 2160 5.048852 GCTACTCCCGTCGTCTAGAATTATT 60.049 44.000 0.00 0.00 0.00 1.40
1985 2161 4.455190 GCTACTCCCGTCGTCTAGAATTAT 59.545 45.833 0.00 0.00 0.00 1.28
1986 2162 3.812053 GCTACTCCCGTCGTCTAGAATTA 59.188 47.826 0.00 0.00 0.00 1.40
1987 2163 2.617774 GCTACTCCCGTCGTCTAGAATT 59.382 50.000 0.00 0.00 0.00 2.17
1988 2164 2.220313 GCTACTCCCGTCGTCTAGAAT 58.780 52.381 0.00 0.00 0.00 2.40
1989 2165 1.065926 TGCTACTCCCGTCGTCTAGAA 60.066 52.381 0.00 0.00 0.00 2.10
1990 2166 0.538584 TGCTACTCCCGTCGTCTAGA 59.461 55.000 0.00 0.00 0.00 2.43
1991 2167 1.376543 TTGCTACTCCCGTCGTCTAG 58.623 55.000 0.00 0.00 0.00 2.43
1992 2168 1.825090 TTTGCTACTCCCGTCGTCTA 58.175 50.000 0.00 0.00 0.00 2.59
1993 2169 1.183549 ATTTGCTACTCCCGTCGTCT 58.816 50.000 0.00 0.00 0.00 4.18
1994 2170 2.856557 GTTATTTGCTACTCCCGTCGTC 59.143 50.000 0.00 0.00 0.00 4.20
1995 2171 2.231964 TGTTATTTGCTACTCCCGTCGT 59.768 45.455 0.00 0.00 0.00 4.34
1996 2172 2.601763 GTGTTATTTGCTACTCCCGTCG 59.398 50.000 0.00 0.00 0.00 5.12
1997 2173 2.601763 CGTGTTATTTGCTACTCCCGTC 59.398 50.000 0.00 0.00 0.00 4.79
1998 2174 2.613691 CGTGTTATTTGCTACTCCCGT 58.386 47.619 0.00 0.00 0.00 5.28
1999 2175 1.326548 GCGTGTTATTTGCTACTCCCG 59.673 52.381 0.00 0.00 0.00 5.14
2000 2176 2.352388 TGCGTGTTATTTGCTACTCCC 58.648 47.619 0.00 0.00 0.00 4.30
2001 2177 3.682858 TCTTGCGTGTTATTTGCTACTCC 59.317 43.478 0.00 0.00 0.00 3.85
2002 2178 4.725169 GCTCTTGCGTGTTATTTGCTACTC 60.725 45.833 0.00 0.00 0.00 2.59
2003 2179 3.125316 GCTCTTGCGTGTTATTTGCTACT 59.875 43.478 0.00 0.00 0.00 2.57
2004 2180 3.125316 AGCTCTTGCGTGTTATTTGCTAC 59.875 43.478 0.00 0.00 45.42 3.58
2005 2181 3.334691 AGCTCTTGCGTGTTATTTGCTA 58.665 40.909 0.00 0.00 45.42 3.49
2006 2182 2.154462 AGCTCTTGCGTGTTATTTGCT 58.846 42.857 0.00 0.00 45.42 3.91
2007 2183 2.619013 AGCTCTTGCGTGTTATTTGC 57.381 45.000 0.00 0.00 45.42 3.68
2008 2184 6.251376 GGAAATAAGCTCTTGCGTGTTATTTG 59.749 38.462 9.55 0.00 45.42 2.32
2009 2185 6.151144 AGGAAATAAGCTCTTGCGTGTTATTT 59.849 34.615 0.00 0.00 45.42 1.40
2010 2186 5.648092 AGGAAATAAGCTCTTGCGTGTTATT 59.352 36.000 0.00 0.00 45.42 1.40
2011 2187 5.186198 AGGAAATAAGCTCTTGCGTGTTAT 58.814 37.500 0.00 0.00 45.42 1.89
2012 2188 4.575885 AGGAAATAAGCTCTTGCGTGTTA 58.424 39.130 0.00 0.00 45.42 2.41
2013 2189 3.412386 AGGAAATAAGCTCTTGCGTGTT 58.588 40.909 0.00 0.00 45.42 3.32
2014 2190 3.059352 AGGAAATAAGCTCTTGCGTGT 57.941 42.857 0.00 0.00 45.42 4.49
2015 2191 5.741388 AATAGGAAATAAGCTCTTGCGTG 57.259 39.130 0.00 0.00 45.42 5.34
2016 2192 5.066505 CCAAATAGGAAATAAGCTCTTGCGT 59.933 40.000 0.00 0.00 41.91 5.24
2017 2193 5.506317 CCCAAATAGGAAATAAGCTCTTGCG 60.506 44.000 0.00 0.00 41.91 4.85
2018 2194 5.221322 CCCCAAATAGGAAATAAGCTCTTGC 60.221 44.000 0.00 0.00 41.22 4.01
2019 2195 6.129179 TCCCCAAATAGGAAATAAGCTCTTG 58.871 40.000 0.00 0.00 41.22 3.02
2020 2196 6.341408 TCCCCAAATAGGAAATAAGCTCTT 57.659 37.500 0.00 0.00 41.22 2.85
2021 2197 5.994416 TCCCCAAATAGGAAATAAGCTCT 57.006 39.130 0.00 0.00 41.22 4.09
2022 2198 6.129874 ACTTCCCCAAATAGGAAATAAGCTC 58.870 40.000 0.00 0.00 42.75 4.09
2023 2199 6.092346 ACTTCCCCAAATAGGAAATAAGCT 57.908 37.500 0.00 0.00 42.75 3.74
2024 2200 6.791867 AACTTCCCCAAATAGGAAATAAGC 57.208 37.500 0.00 0.00 42.75 3.09
2025 2201 9.435688 CAAAAACTTCCCCAAATAGGAAATAAG 57.564 33.333 0.00 0.00 42.75 1.73
2026 2202 9.160412 TCAAAAACTTCCCCAAATAGGAAATAA 57.840 29.630 0.00 0.00 42.75 1.40
2027 2203 8.590204 GTCAAAAACTTCCCCAAATAGGAAATA 58.410 33.333 0.00 0.00 42.75 1.40
2028 2204 7.292356 AGTCAAAAACTTCCCCAAATAGGAAAT 59.708 33.333 0.00 0.00 42.75 2.17
2029 2205 6.613679 AGTCAAAAACTTCCCCAAATAGGAAA 59.386 34.615 0.00 0.00 42.75 3.13
2030 2206 6.140377 AGTCAAAAACTTCCCCAAATAGGAA 58.860 36.000 0.00 0.00 41.14 3.36
2031 2207 5.711698 AGTCAAAAACTTCCCCAAATAGGA 58.288 37.500 0.00 0.00 34.90 2.94
2032 2208 5.538433 TGAGTCAAAAACTTCCCCAAATAGG 59.462 40.000 0.00 0.00 38.74 2.57
2033 2209 6.447162 GTGAGTCAAAAACTTCCCCAAATAG 58.553 40.000 0.00 0.00 38.74 1.73
2034 2210 5.303333 GGTGAGTCAAAAACTTCCCCAAATA 59.697 40.000 0.00 0.00 38.74 1.40
2035 2211 4.100963 GGTGAGTCAAAAACTTCCCCAAAT 59.899 41.667 0.00 0.00 38.74 2.32
2036 2212 3.449377 GGTGAGTCAAAAACTTCCCCAAA 59.551 43.478 0.00 0.00 38.74 3.28
2037 2213 3.028130 GGTGAGTCAAAAACTTCCCCAA 58.972 45.455 0.00 0.00 38.74 4.12
2041 2217 4.640647 ACTTCTGGTGAGTCAAAAACTTCC 59.359 41.667 0.00 0.00 38.74 3.46
2045 2221 6.848451 TGTTTACTTCTGGTGAGTCAAAAAC 58.152 36.000 0.00 0.00 0.00 2.43
2049 2225 6.174720 AGATGTTTACTTCTGGTGAGTCAA 57.825 37.500 0.00 0.00 0.00 3.18
2052 2228 6.174720 TCAAGATGTTTACTTCTGGTGAGT 57.825 37.500 0.00 0.00 31.71 3.41
2078 2254 9.772973 TCTAGCACAAAGTAAAAATAGACTTCA 57.227 29.630 0.00 0.00 34.81 3.02
2081 2257 8.154856 TGGTCTAGCACAAAGTAAAAATAGACT 58.845 33.333 8.45 0.00 38.48 3.24
2082 2258 8.319143 TGGTCTAGCACAAAGTAAAAATAGAC 57.681 34.615 0.00 0.00 37.98 2.59
2083 2259 8.911918 TTGGTCTAGCACAAAGTAAAAATAGA 57.088 30.769 0.00 0.00 0.00 1.98
2084 2260 9.959749 TTTTGGTCTAGCACAAAGTAAAAATAG 57.040 29.630 10.26 0.00 37.80 1.73
2086 2262 9.313118 CTTTTTGGTCTAGCACAAAGTAAAAAT 57.687 29.630 10.97 0.00 37.80 1.82
2092 2268 5.193679 ACTCTTTTTGGTCTAGCACAAAGT 58.806 37.500 16.17 1.73 37.80 2.66
2093 2269 5.757850 ACTCTTTTTGGTCTAGCACAAAG 57.242 39.130 12.37 12.37 37.80 2.77
2094 2270 5.885912 AGAACTCTTTTTGGTCTAGCACAAA 59.114 36.000 7.35 7.35 35.01 2.83
2095 2271 5.296780 CAGAACTCTTTTTGGTCTAGCACAA 59.703 40.000 0.00 0.00 0.00 3.33
2097 2273 4.319839 GCAGAACTCTTTTTGGTCTAGCAC 60.320 45.833 0.00 0.00 0.00 4.40
2104 2280 2.952310 GAGGTGCAGAACTCTTTTTGGT 59.048 45.455 5.90 0.00 0.00 3.67
2120 2448 3.696548 GGGCTATGAAAAAGGAAGAGGTG 59.303 47.826 0.00 0.00 0.00 4.00
2150 2478 3.624410 TCTCGCCATGATTCATGTTTCTG 59.376 43.478 21.95 9.86 39.94 3.02
2151 2479 3.875727 CTCTCGCCATGATTCATGTTTCT 59.124 43.478 21.95 0.00 39.94 2.52
2152 2480 3.873361 TCTCTCGCCATGATTCATGTTTC 59.127 43.478 21.95 11.57 39.94 2.78
2155 2483 2.697229 TCTCTCTCGCCATGATTCATGT 59.303 45.455 21.95 0.00 39.94 3.21
2156 2484 3.382048 TCTCTCTCGCCATGATTCATG 57.618 47.619 18.00 18.00 41.10 3.07
2157 2485 4.412796 TTTCTCTCTCGCCATGATTCAT 57.587 40.909 0.00 0.00 0.00 2.57
2158 2486 3.893326 TTTCTCTCTCGCCATGATTCA 57.107 42.857 0.00 0.00 0.00 2.57
2159 2487 4.187694 ACTTTTCTCTCTCGCCATGATTC 58.812 43.478 0.00 0.00 0.00 2.52
2168 2530 2.731976 CCGTTCCAACTTTTCTCTCTCG 59.268 50.000 0.00 0.00 0.00 4.04
2175 2537 0.933047 GCACGCCGTTCCAACTTTTC 60.933 55.000 0.00 0.00 0.00 2.29
2195 2557 3.193691 TCTTCTTTTCGTGCTAGGAGGAG 59.806 47.826 6.74 0.00 0.00 3.69
2200 2562 5.639506 TCTTGATTCTTCTTTTCGTGCTAGG 59.360 40.000 0.00 0.00 0.00 3.02
2201 2563 6.712241 TCTTGATTCTTCTTTTCGTGCTAG 57.288 37.500 0.00 0.00 0.00 3.42
2202 2564 6.147821 CCTTCTTGATTCTTCTTTTCGTGCTA 59.852 38.462 0.00 0.00 0.00 3.49
2208 2572 5.409826 TCGAGCCTTCTTGATTCTTCTTTTC 59.590 40.000 0.00 0.00 0.00 2.29
2209 2573 5.308825 TCGAGCCTTCTTGATTCTTCTTTT 58.691 37.500 0.00 0.00 0.00 2.27
2214 2578 3.739519 CGGATCGAGCCTTCTTGATTCTT 60.740 47.826 19.08 0.00 42.20 2.52
2228 2592 3.482598 GCGCAATTATGAATCGGATCGAG 60.483 47.826 0.30 0.00 39.91 4.04
2236 2600 1.398595 GCCACGCGCAATTATGAATC 58.601 50.000 5.73 0.00 37.47 2.52
2237 2601 3.549997 GCCACGCGCAATTATGAAT 57.450 47.368 5.73 0.00 37.47 2.57
2254 2618 4.666253 TGCCTGTCTTGCCCCTGC 62.666 66.667 0.00 0.00 38.26 4.85
2256 2620 2.541907 ATGTGCCTGTCTTGCCCCT 61.542 57.895 0.00 0.00 0.00 4.79
2257 2621 2.036256 ATGTGCCTGTCTTGCCCC 59.964 61.111 0.00 0.00 0.00 5.80
2283 2647 3.988379 TTTTCTGCTGGCTGTTACTTG 57.012 42.857 0.00 0.00 0.00 3.16
2284 2648 5.560724 TCTATTTTCTGCTGGCTGTTACTT 58.439 37.500 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.