>input_sequence_80182
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--------------------------------------------------------------ATGGAAGGGTTGCAGAGA
TCGTCCTCGACTTTCAGACGGTCCGGCTCGTCGGGCCTGGTGTGGGACGAGCGGTTCCTGACCGAGGGCGCCGAGGCGCA
GGCCGCCGGCGAGGGCGGCGCCGATGACGCCCAGCCGGAGATGCGGCGCTCCCGGAGCACCGGCGGCGTCGGGATGATGC
TGCGCCGGGGCGGCGACGACAAGAAGCAGCAGCAGCAGCAGCAGAAAAAGAAGGAGCAACAAGGCCAGAAGAAGAAGGAC
GAGGAGCGCGATCCCCAGGTGTTCCGGACCAAGGAGGTGGCCCCGGACGTGGACCCGCCGTCGCCGAGGGTGTCCGGCTG
CATCCTCTGCGCCATCTTCGGGGGCTCCGGCTCCGGCTCCGGCTCCAGCCCCGCGGCGCGCCGAGGCCGCGCCAAGCCGA
AGAGGAAGCAACGGCCGGCGGCGTGA------------------------------------------------------
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>chr7A_1_TraesCS7A01G373600
ACTGGGGATAATGAGGATGGAAAGGAAGGAGAGCCTGGAGTTTATGTAATAGAGAAATGCTACCAGGGACAAAGACATGA
GCGGATAGCCGGATATAGGGGTGAAAGAAATTGGAAGAAAAATGTTGGCAGTCTGTAT----CATCTATTCTTAGATGAT
ATAGCCAGT------------------------GGATTGTACACATCTCTTTATTGACAATCTTCCGGCCACCTT---CC
ACTCTACCCAGCGTAATGATGATTGGTAGTTCGCTGATGCTGACTGGAGCCGAAATACAATTGCATTTTCCCTTGGCTGG
CTTTGCTTTCTCTTGGGCCCTCTGCACTTCTTATTCAGACGCACCGTTTCTTCATCGACAGAGTTATGGTGGCGATCGCC
GTCCATATGAAAGGTAAGATTCCTGCTACACTATTTTCTCTGCTATGTTCAT----------------------------
------------------CATCTTTATTATGCCGACGCATATCATACATACACCATAAACCTCTTTGTGGATCCTCTT--
------GTGTTGACACATCACTTGCAC-TTCACATCAGATCAGGGCCAACTAGTGCATCCATTTGCGCAGGTCGCTCTCT
GCGAATTATCTTGGCCCTGTAGTGGGTTTGGTGATGCTTACCGGTTGCTCATGGGCACAGTTGGGCTCTCTTCCCTCCAC
ATGCCCGTGATGGAAAAGTATTACCGGCGCATGTGGATCAGAATAGTAGTTTAATCTGACAGCTCTTGTCCTGTTTTAAC
TGAACGTAGACTAATCTCTCCATAGGTTTGTTAGTAGTAGTAGTAGGTTATGGGAGGAGACAGGCCCTGGTAGCCCTCAG
TGCCACCGGCTGTTGACTGCTCTCCTGTCTGTACGTTAATGGCCGTCCCTTTCCCTTCACATATATACATACGCACAGGA
GGCCTGGG-AAGGCAAAGCACCAAC--CTCAGGAGACACATCCT---------CCTTGCCTCTTGTGTTCTCTTCTCCAT
AGCTTGCAGATAAGCAAAGCTTGTCCGTTGCGCGGGGAGGGGAGGTGGACAGGTGCG----GATGGAAGGGTTGCAGAGA
TCGTCCTCGACTTTCAGACGGTCCGGCTCGTCGGGCCTGGTGTGGGACGAGCGGTTCCTGACCGAGGGCGCCGAGGCGCA
GGCCGCCGGCGAGGGCGGCGCCGATGACGCCCAGCCGGAGATGCGGCGCTCCCGGAGCACCGGCGGCGTCGGGATGATGC
TGCGCCGGGGCGGCGACGACAAGAAGCAGCAGCAGCAGCAGCAGAAAAAGAAGGAGCAACAAGGCCAGAAGAAGAAGGAC
GAGGAGCGCGATCCCCAGGTGTTCCGGACCAAGGAGGTGGCCCCGGACGTGGACCCGCCGTCGCCGAGGGTGTCCGGCTG
CATCCTCTGCGCCATCTTCGGGGGCTCCGGCTCCGGCTCCGGCTCCAGCCCCGCGGCGCGCCGAGGCCGCGCCAAGCCGA
AGAGGAAGCAACGGCCGGCGGCGTGAAGCTTGATCGGGCCATGGTGGG----TGCCATGCGAGCTGTGTTTATACTGGAG
TGATGATGATGG---TATACTACTGATATTGGTTGGTTTGTATTGTACTCCGCTCTGCGTTACCGCGTAGCTAGTAGTCC
ATACGTGTCAGGTTAGTTCCTCTTTTTTGGGTCAGTTTCTGGATTCAGATCCGTGAGCTGAGCAGCTGCTGTTGAGATCT
GTGGTGTTCTCTCTTGATCTGGTGCATGGCCTTTCCCCTCTGG----------------------AGCCGCTGGGCGTTG
GTTGCTTGATTGGTTGCATGTGAGTGTGAGGTGTTGCTACTGTTGCTGCCGT--------GTTGCATGTATGGAGTTGCA
ACCATAAACAATCGATTGGGCGGCAAAACATTGGGGCGTGGG-GCATGTGTGTTCATGCTGCCCAA--------------
---------------------GCTATGGCGAATTTCCTCGTCCTTGCTTTGGAATCTTTTCTTTTGTATTACCTCCATCG
CAAATGATTTGTTCAGACACGGATATATCTGACACTAAAACATGCCTAAATACATCGGTACATAGACAAATCTAAAACAA
ATAATTCTAGACGACGGGAGTAGCAAATAACACGCAAGAGCTTATTTCCTATTTGGGGAAGTTTTTGACTCACCAGAAGT
AAACATCTTGATATGAAGTCTATTTTTACTTTGTGCTAGACCAAAAAGAGTT----------------------------
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--------------------------------------------CTGCACCTCTTCCTTTTTCATAGCCCAAACTGGCAG
AAACATGA----------------------------------ATCATGGCGAGAGAGAAAAGTTGGAACGGCGTGCCTCC
TCCTAGCAC--GAAAAGAAGAATCAAGAAGGCTCGATCCGATTCATAATTGCGCGTGGCAGGGGCAAGACAGGCACATGA
AGGTCCCAAGTAACAGCCAGCAGAAAATAGAAACATCACATGGGCCGGCCACATGATGATCTCCTCCGTTTCATGACCCT
GTCCCCGGGTCCCGTCCCGTCTGCTCGCCGAGTTGGACGTGGACCGCCGTCCGTTCCGGCCACCGGCGCCGACACCGACA
TGCCGCA
>chr7D_1
ACTGGGGATAACGATGATGGAAAGGAGAGAGGGTCTGGAGTTTGTGTGACAGAGAAATGCTACCAGGGAGAACAACATGA
GTGGATATAG-------GGGGAGGAAGAAATTGGAAGAAAAACGTTGGCAGTCTGTATGTATCATT--TTCTGAGATGAT
ATAGCTAGTCATTCTATATATCCTTTAGCTAGTGGATTGTACACATCTCTTTATTGACAATCTTCGGGCCACCTTCCACC
ACTCTACCCCGTGTAATGATGATTGGTTGTTCGCTGATGCTGACCGGAGCCGAAATACAATTGCCATTTGCCTTTGCTTC
A-----TTTCTCTTGGGCCCTCTGCACTCCTCATTCAGACGTACTGTTTCTCCATTAACCGAATTCTGGTGGCGATT---
GTTCATATGAAAGGTAAGATCCCTGCTGCACAATTTTCTCGGCTATGTTTATCATCTTTATGCCGACGCATATCATACAT
ACACCTTACATGTTTTTCCATCTTTATTATGCCGACGCATATCATGCATACACCTTACATATTTTTCCTGGACCCTGTTG
CGTTAAGTGTTGACACATCAGTGGCAC-TTCACATCAGC-----GCCAACTAGTGCATCCATTTGTGTAGGTCGCTCTCT
GTGAATTGTCTTGGCCCTGTAGTGGGTTTGGTTATCCTTACCAGTTGCTCTTGCGCACAGCTGGGCTCTCTTCCCTCCAC
ATGCCTGTGATGGAAAAGTATTACCGGCGCATGTGGATCAGAACAGTAGTTTAATCTGACAGCCCCTGTACTGTTTTAAC
CGAACGTAGACTAATCCCTGCACAGGTTTGTTAACAG-AGTAGTAGGTTATTGGAGGGGACAGGCCCTGGTAGCTTTCAG
TGCCACCGGCTGTTGACTGCTCTCCTGTCTACACGTTAATGGCCGTCCCTTTCGGTTCACATATATACACACACGCACAA
GAGAAGGCAAAGGCAAAGCACCAACCCCTCAAGAGACACATCCTTCAGCTCATCCTTGCCTCTTGCGTTCTCTTCTCCGT
AGCTTGCAGATAAGT-AAGCTTGTCCGTTGTGCGGAGAGGGGAGGCGGATAGGTACATACACATGGAAGGGTTGCAGAGA
TCGTCCTCCACTTTCAGAAGGTCCGGCTCGTCGGGCCTGGTGTGGGACGAGCGGTTCCTGACCGAGGGCGCCGAGGCGAA
GGCCGCCGGCGAGGGCGGCACGGATGAAGCCCAGCCGGAGATGCGGCGCTCCCGGAGCACCGGCGGCGTCGGGATGATGC
TGCGCCGTGGCGGCGACGACAAGAAGCAGCAGCAGCAG---------AAAAAGGAGCAGCAAGGCCAGAAGAAGAAGGAC
GAGGAGCGCGATCCCCAGGTGTTCCGGACCAAGGAGGTGGCCCCGGACGTGGACCCGCCGTCGCCGAGGGTGTCCGGCTG
CATCCTCTGCGCCATCTTCGGGGGCTCCGGCTCCGGCTCTG------GCCCGGCGGCGCGCCGAGGCCGCGCCAAGCCGA
AGAGGAGGCAACGGTCGGCGGCGTAAAGTTTGATCGGGCCTTGGCGGATGGATGTCATGCGAGCTGTGTTTATACTGGAG
TGACGATGATGATGATATACTACTGATATTGGTTGGTTTGTATTGTACTCTGCTCTGCGTTACTGCGTAC---GTAGTCT
ATACGTGTCAGGTTAGTTCCTCTTTTTTTGGTTAGTTTCTGGGTTCAGATCCGTGAGC--AGCAGCAGCTGCTGAGATCT
GCGATGTTCTTTCTTGATCTGGCGCATGATTTTTTCCCCGTCCCTTTCTTGAGCTGTTGAGCAGCAGCCGCTGGGTGTTG
GTTGC--------TTGCATGTGAGTGTGAGGTGTTGGCAC-----------T--------GTTGCATGTATGGAGCTGCA
ACCATAAACAATCAATTGGGCGGCAAAACATTTGGGCATGGCCGCATGTGTGCTCATGCTGCCGGTGCGCGTTCTGTTCT
GGCTCGTGAGGCGGTGCCGACGCTATGGTGCG------------------------------------------------
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--------------AAG-----TTTTTTTACTTTGCTAGGCAGAAAAGAGTTATAAATTTCTCTGCCTCGCACACAGCCC
GTTCTTATGAAATTCATGTGCTCCAAACTCTGTTAGCCGAGCGTAGTTCTATTGGGTCGGTCCGGTGACCGGAACATGCA
CCGGTCGGCTCAAGAAACTGATCCCGGGGTGGCAACTCTGTTAGCTGGACCTCCTCCTTTTTCGTAGCCCAAACAGGTGA
AACATGACTCATCATGGAGGTTCTCAAAAAAACAAAAAAATCATCATGGAGAGAGAAAAAAGTTGCAAGGGCGTGCTTCC
T---AGCAC--ACAAAGTAGAATCAAGAAGGATCGATCCCGTTCATAATTGCGCGTGACGCGGGCAAGACAGGCACATGG
AGGTCCG-AGTAACAGCCAGCAGACAATAGAAACACCACATGGGCCGGCCACATGATGATCTCCTCCGTTTCATGACTCT
GTCGCCGG-----GTCCCGTCTGCTCGCCGAGTTGGACGTGGACCATCGTCCGTTCCTGCCACCGGTGCCGACATTGACA
TGC----
>chr7B_7
------GATAATGATGATGGAAAGGAGGGAGAGTCTGGAGTTTGTGTGACAGAGAAATGCTACCAGGGAGAACGACATGA
GCGGATATAGAGGA------------------GGAAGAAATATGTTGGCAGTCTGTAT----CATT--TTCTTTGATGAT
ATAGCTAGTGATTATACATATCCTTCAGCTAGTGGATTGTACACATCTCTTTATTGACAATCTTCCGGCCACCTTCCACC
ACTCTACCTCGTGTAATGATGATTGGTTGTTCGCTGATGCTGACCGGAGCCGAAATACAATTGCTATTTGCCTTTGCTTC
A-----TTTCTCTTGGGCCCTCTGCACTCCTTATTCAGACGTACTGTTTCTCCATTAACCGAATTCGGGTGGCGACT---
GTTCATATGAAAGGTAAGATTCCTGCCGCACAATTTTCTCACCTATGTTTATCATCTTTATGCCGACGCATATCATACAT
ACACCTTGCATATTTTTCCATCTTTAT---GCCGATGCATATCATACATACACCTTACATATTTTTCCTGGACCC----G
CGTCGAGTGTTGACACATCAGTGACAG-TTCACATCAGC-----GCCAACTAGTGCATCCATTTGTGTAGGTCGCTCTCT
GTGAATTGTCTTGGCCCTGTAGTGGGTTTGGTGATGCTTACCAGTTGCTCATGCGCATAGTTGGACTCTCTTTCCTCCAC
ATGCCTGTGATGGAAAAGTATTACCGGGGCATGTGGATCAGAATAGTAGTTTAATCTGACAGCCCCTGTACTGTTTTAAC
CGAACGTAGACTAATCCCTGCACAGGTTTGTTAA---------TAGGTTATTGGAGGAGACAGGCCCTGGTAGCTTTCAG
TGGCACCGGCTGTTGACTGCTCTCCTGTCTGCACGTTAATGGCCGTCCCTTTCGGTTCACATATATACACA--CGCACAA
GAGAAGGCAAAGGCAAAGCACCAACCCCTCAAGAGACACATCCTTGCC--------TGCCTCTTGCGTTCTCTTCTCCGT
AGCTTGCAGATAAGT-AAGCTTGTCCGTTGCGCGGAGAGGGGAGGCGGATAGGTACATACAGATGGAAGGGTTGCAGAGA
TCGTCCTCCACTTTCAGAAGGTCCGGCTCGTCGGGCCTGGTGTGGGACGAGCGGTTCCTGACCGAGGGCGCCGAGGCGAA
GGCCGCCGGCGAGGGCGGCACCGATGAAGCCCAACCGGAGATGCGGCGCTCCCGGAGCACAGGCGGCGTCGGGATGATGT
TGCGCCGCGGTGGCGATGATA------AGAAGCAGCAGCAGCAGAAAAAGAAGGAGCAACAAGGCCAGAA---GAAGGAC
GAGGAGCGCGATCCCCAGGTGTTCCGGACCAAGGAGGTGGCCCCGGACGTGGACCCTCCGTCGCCGAGGGTGTCCGGCTG
CATCCTCTGTGCCATCTTCGGCGGCTCCAGCTCCGGCCCGGGAG------CCGCGGCGCGCCGAGGCCGCGCCAAGCCGA
AGAGGAGGCAACGGTCGGCGGTGTAAAGGTTGATCGGGCCATGG----TGGATGTCATGCGAGCTGTGTTTATACTGGAG
TGACGATG---ATGATATACTACTGATATTGGTTGGTTTGTATTGTACTCTGCTCTGCGTTACTGCGTAC---GTAGTCT
ATACGTGTCAGGTTAGTTCCTCTTTTTTGGGTTAGTTTCTGGGTTCAGATCCGTGAGC--AGCAGCAGCTGCTGAGATCT
GTGATGTTCTTTCTTGATCTTGCGCATGAATTTTTTCCCGTCCTTTTCTTGAGCTGTTGAGCAGCTGCCGCTGGGTGTTG
GTTGC--------TTGCATGTGAGTGTGAGGTGTTGGCAC-----------TGTTGCTGGGTTGCATGTATGGAGTTGCA
ACCATAAACAATCAATTGGGCGGCAAAACATTTGGGCATGGCCGCATGTGTAGGTGTGCTGCCGCTGCGTGTGCTGTTCT
GGCCCATGAGGCGGTGCCGACGCTATGGTGATTTTTTTTTTTTGAAACAAGTTA--------------------------
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-----------------------------------------------------TGGTGAAATTTGTGGCTCACCAGAAGT
AAATCTCTTCGTGCAAG-----TTTATTTACTTTGCTAGGCAAAAAAGAGTTACAAATTTCTCTGCCTTGCACACTGCCC
GTTCTTATGAAATTCATGTGCTCCAAACTCCGTTAGCCGAGCGTAGTTCTATCGGGTCGGTCCGGTCACCGGAACATGCG
CCGGTTGGCTCAAGAAACCGATCCCGGGGTGGCAACTCTGTTAGCTGGACCTCTTCCTTTTTCGTAGCCCAAACTGGTGA
AACATGAATCATCATGGAGAT-------------------------TGGAGAGAGAAAAAAGTTGCAAGGGCGTGCTTCC
T---AGCACACACAAAGTAGAATGAAGAAGGATCGATCCCGTTCATAATTGCGCGTGACGCGGGTAAGACAGGCACATGA
AGGTCCG-AGTAACAACCAGCAGAAAATAGAAACACCACATGGGCCGGCCACATGATGATCTCCTCCATTTCATAACTCT
GTCGCCGG-----GTCCCGTCTGCTCGCCGAGTTGGACGTGGACCATCGTCCGTTCCTGCCACCGGTGCCGACATTGACA
TGC----
>chr6D_434
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------------------------------GCTGATGCAAATCATACATACACCTTACATATTTTTCCTG-------TTG
CGTCGAGTGTTGACACATCAGTGGCAGGTTCACATCAGC-----GCCAACTAGTGCATCCATTTGTGTAGGTCGCTCTCT
GTGAATTGTCTTGGCCCTGTAGTGGGTTTGGTGATGCTTACCAGTTGCTCATGCGCATAGTTAGACTCTCTTTCCTCCAC
ATGCCTGTGATGGAAAAGTATTACCGGGGCATGTGGATCAGAATATTAGTTTAATCTGACAGCCCCTGTACTGTTTTAAC
CGAACGTAGACTAATCCCTGCACAGGTTTGTTAATAG-AGTAGTAGGTTATTGGAGGAGACAGGCCCTGGTAGCTTTCAG
TGGCACCGGCTGTTGACTGCTCTCCTGTCTGCACGTTAATGGCCGTCCCTTTCGGTTCACATATATACACA--CGCACAA
GAGCAGGCAAAGGCAAAGCACCAACCCCTCAAGAGACACATCCTTGCC--------TGCCTCTTGCGTTCTCTTCTCCGT
AGCTTGCAGATAAGT-AAGCT-----------------------------------------------------------
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>chr3D_434
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------------------------------GCTGATGCAAATCATACATACACCTTACATATTTTTCCTG-------TTG
CGTCGAGTGTTGACACATCAGTGGCAGGTTCACATCAGT-----GCCAACTAGTGCATCCATTTGTGTAGGTCGCTTTCT
GTGAATTGTCTTGGCCCTGTAGTGGGTTTGGTGATGCTTACCAGTTGCTCATGCGCATAGTTGGACTCTCTTTCCTCCAC
ATGCCTGTGATGGAAAAGTATTACCGGGGCATGTGGATCAGAATATTAGTTTAATCTGACAGCCCCTGTACTGTTTTAAC
CGAACGTAGACTAATCCCTGCACAGGTTTGTTAATAG-AGTAGTAGGTTATTGGAGGAGATAGGCCCTGGTAGCTTTCAG
TGGCACCGGCTGTTGACTGCTCTCCTGTCTACACGTTAATGGCCGGCCCTTTCGGTTCACATATATACACA--CGCACAA
GAGAAGGCAAAGGCAAAGCACCAACCCCTCAAGAGACACATCCTTGCC--------TGCCTCTTGCGTTCTCTTCTCCGT
AGCTGGCAGATAAGT-AAGCT-----------------------------------------------------------
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>chrUn_440
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------------------------------------GCAAATCATACATACACCTTACATATTTTTCCTG-------TTG
CGTCGAGTGTTGACACATCAGTGGCAGGTTCACATCATC-----GCCAACTAGTGCATCCATTTGTGTAGGTCACTCTCT
GTGAATTGTCTTGGCCCTGTAGTGGGTTTGGTGATGCTTACCAGTTGCTCATGCGCATAGTTGGACTCTCTTTCCTCCAC
ATGCCTGTGATGGAAAAGTATTACCGGGGCATGTGGATCAGAATATTAGTTTAATCTGATAGCCCGTGTACTGTTTTAAC
CAAATGTAGACTAATCCCTACACAGGTTTGTTAATAG-AGTAGTAGGTTATTGGAGGAGACAGGCCCTGGTAGCTTTCAG
TGGCACCGGCTGTTGACTGCTCTCCTGGCTGCACGTTAATGGCCGTCCCTTTCGGTTCACATATATACACA--CGCACAA
GAGAAGGCAAAGGCAAAGCACCAACCCCTCAAGAGACACATCCTTGCC--------TGCCTCTTGCGTTCTCTTCTCCGT
AGCTTGCAGATAAGT-AAGCT-----------------------------------------------------------
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>SNPs
--------------S-----------S------S---------S---S-S-------------------S--S-------
-------SSSS-SSSSS----S-S-----------------------------------------SSS------------
-----S--------------------------------------------------------------------------
---------S-S---------------S----------------S-------------------SS---S----S---SS
SSSSSS----------------------S------------S--S------S---SS--S--S--S----------SSSS
--S------------------------S---S--------S--------S------------------------------
------------------------------------------------------S--S-SS-S---SSS-SS--SSS---
--------------------S-S---------------SSSSSS---------------------S-S------------
-S-----S----------------------------------S----------S--------------------------
-----S---------------------------------------------------------S-S---S----------
S---------------S--S--S----------S---S-------------S----------------------SS----
-------------------------------S---------------------SS--------------S--S-S--SS-
-SS-S--S-----------------------S---------------------------------S------------S-
--------------SS-------------------S---------S---S----S-S-----------------------
--------S---------S-----------------------------------------------------------S-
-------------------S-------S----------------------------------------------------
-------S------------------------------------------------------------------------
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---------------------------------------S--SSSSS---------------------------------
------S-------S---------S---S---------------S--S------S-------------------------
---S-------S--------------------------------------S------------S-----SSSS------S
--------------------------------S---------S---------------SS------S----S--------
---S------S-----------S-----SSS---S---SS-SS--------------------------------S----
-----SSSSSSSS-----------------------SS--SSSSSSSSSSS-----------------------------
-------------S------------------S----S---S----------S----------SSS--------------
----------------------------S--S---SS-SS-SSSSSSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S---S--S------------
---SS----SS-SSS-SSSSSS-----SSSS-S------S-S--------------------------------------
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-----------------------------------------------S---------------S-------------SSS
--SSSSS------------------------------------------S------S--------S--S-------S---
-SSS-------SS----S-------------S-------SS----------------S-SS-------------------
------SS---------------------------S-----------------------------------------S--
---S----SSSSS--------------------------------SS----------S--------S-------SS----
---SSSS
>forward_935
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-----------------------------------TTAATGGCCGTCCCTTTCCC-------------------------
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>reverse_1877
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------------------------------------CTACTGTTGCTGCCGTGTTG------------------------
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