Multiple sequence alignment - TraesCS7A01G348400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G348400 chr7A 100.000 2249 0 0 1 2249 511053738 511055986 0.000000e+00 4154.0
1 TraesCS7A01G348400 chr7A 95.122 41 2 0 115 155 39274925 39274965 5.180000e-07 65.8
2 TraesCS7A01G348400 chr7B 86.857 1400 114 26 5 1353 438990233 438991613 0.000000e+00 1502.0
3 TraesCS7A01G348400 chr7B 84.549 233 20 6 1356 1574 438991718 438991948 1.350000e-52 217.0
4 TraesCS7A01G348400 chr7B 93.827 81 5 0 1878 1958 438992299 438992379 3.030000e-24 122.0
5 TraesCS7A01G348400 chr7D 94.669 619 23 4 736 1353 422109650 422109041 0.000000e+00 952.0
6 TraesCS7A01G348400 chr7D 85.988 521 23 17 228 699 422110166 422109647 1.540000e-141 512.0
7 TraesCS7A01G348400 chr7D 83.636 330 38 5 1878 2196 422108436 422108112 1.690000e-76 296.0
8 TraesCS7A01G348400 chr7D 82.768 354 25 11 1356 1675 422108934 422108583 1.310000e-72 283.0
9 TraesCS7A01G348400 chr7D 83.505 194 28 4 20 211 422110646 422110455 6.380000e-41 178.0
10 TraesCS7A01G348400 chr7D 94.118 51 3 0 1726 1776 422108595 422108545 6.660000e-11 78.7
11 TraesCS7A01G348400 chr2B 95.556 45 1 1 115 158 667184 667140 1.110000e-08 71.3
12 TraesCS7A01G348400 chr2B 95.556 45 1 1 115 158 69171528 69171572 1.110000e-08 71.3
13 TraesCS7A01G348400 chr6D 93.333 45 2 1 115 158 454306538 454306494 5.180000e-07 65.8
14 TraesCS7A01G348400 chr4D 95.122 41 2 0 115 155 62483717 62483677 5.180000e-07 65.8
15 TraesCS7A01G348400 chr4D 93.182 44 2 1 116 158 35687184 35687227 1.860000e-06 63.9
16 TraesCS7A01G348400 chr1A 90.196 51 4 1 110 159 580435128 580435078 5.180000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G348400 chr7A 511053738 511055986 2248 False 4154.000000 4154 100.000000 1 2249 1 chr7A.!!$F2 2248
1 TraesCS7A01G348400 chr7B 438990233 438992379 2146 False 613.666667 1502 88.411000 5 1958 3 chr7B.!!$F1 1953
2 TraesCS7A01G348400 chr7D 422108112 422110646 2534 True 383.283333 952 87.447333 20 2196 6 chr7D.!!$R1 2176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 496 0.534873 GTTGCCCCTTGTGTGTGTTT 59.465 50.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 2256 0.251608 TTTAAACCCCAGCCCTCTGC 60.252 55.0 0.0 0.0 39.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 43 4.304110 CATGAAGTCTTGTTGCAATGCTT 58.696 39.130 6.82 3.15 0.00 3.91
41 45 3.380954 TGAAGTCTTGTTGCAATGCTTCA 59.619 39.130 19.93 19.93 38.60 3.02
45 49 1.788308 CTTGTTGCAATGCTTCAACCG 59.212 47.619 6.82 0.00 41.21 4.44
58 62 3.868754 GCTTCAACCGGTAGAAAGGACAT 60.869 47.826 8.00 0.00 0.00 3.06
106 110 8.597167 CCTACAAATTCCAGATCTATACATGGA 58.403 37.037 0.00 0.00 40.04 3.41
129 133 4.354155 TGCACACGCACTTCCTAC 57.646 55.556 0.00 0.00 45.36 3.18
156 160 1.520342 GCACATCCGAGAGACTGGC 60.520 63.158 0.00 0.00 0.00 4.85
158 162 1.000993 ACATCCGAGAGACTGGCCT 59.999 57.895 3.32 0.00 0.00 5.19
159 163 1.040339 ACATCCGAGAGACTGGCCTC 61.040 60.000 3.32 0.00 0.00 4.70
196 203 6.674694 ATCTGCTAAAGATGCACTTAGTTG 57.325 37.500 11.61 6.86 44.36 3.16
212 496 0.534873 GTTGCCCCTTGTGTGTGTTT 59.465 50.000 0.00 0.00 0.00 2.83
231 515 4.899457 TGTTTCCTCTAGGTCTTCACTTCA 59.101 41.667 0.00 0.00 36.34 3.02
232 516 5.221461 TGTTTCCTCTAGGTCTTCACTTCAC 60.221 44.000 0.00 0.00 36.34 3.18
233 517 4.390129 TCCTCTAGGTCTTCACTTCACT 57.610 45.455 0.00 0.00 36.34 3.41
234 518 4.742012 TCCTCTAGGTCTTCACTTCACTT 58.258 43.478 0.00 0.00 36.34 3.16
235 519 4.767928 TCCTCTAGGTCTTCACTTCACTTC 59.232 45.833 0.00 0.00 36.34 3.01
236 520 4.770010 CCTCTAGGTCTTCACTTCACTTCT 59.230 45.833 0.00 0.00 0.00 2.85
251 535 2.050144 ACTTCTCTGCCTTGTCCTTCA 58.950 47.619 0.00 0.00 0.00 3.02
262 552 7.125811 TCTGCCTTGTCCTTCACTATATTAAGT 59.874 37.037 0.00 0.00 0.00 2.24
270 560 8.795513 GTCCTTCACTATATTAAGTAGGAGGAC 58.204 40.741 19.77 19.77 41.19 3.85
289 579 6.365970 AGGACATATAAGAGGCACTAATGG 57.634 41.667 6.74 0.00 41.55 3.16
331 621 5.713389 ACACTTGAAACACATGGATGATGAT 59.287 36.000 0.00 0.00 35.80 2.45
332 622 6.033966 CACTTGAAACACATGGATGATGATG 58.966 40.000 0.00 0.00 35.80 3.07
339 629 1.728425 CATGGATGATGATGTACGCGG 59.272 52.381 12.47 0.00 33.31 6.46
449 741 4.005650 AGGATGTTGCTGACTGTGTATTG 58.994 43.478 0.00 0.00 0.00 1.90
467 759 9.119418 TGTGTATTGTATCGGATGAAATGAAAT 57.881 29.630 0.00 0.00 0.00 2.17
491 783 1.000607 CATGCATGTGGATTAGGCTGC 60.001 52.381 18.91 0.00 0.00 5.25
496 788 1.096967 TGTGGATTAGGCTGCATGCG 61.097 55.000 14.09 9.16 44.05 4.73
549 849 4.158394 AGTTGACTTATGCCGCATCAATTT 59.842 37.500 9.71 0.00 32.30 1.82
609 919 9.571810 GTCAACATCTAAAACATGATAAATGCA 57.428 29.630 0.00 0.00 0.00 3.96
618 951 5.981088 ACATGATAAATGCAAACTCACCA 57.019 34.783 0.00 0.00 0.00 4.17
664 997 4.920376 TGGATACGTACGTAAGGTAAAGC 58.080 43.478 29.91 11.72 41.63 3.51
707 1050 2.169769 TGAGAGGACGTGTTGGAAAACT 59.830 45.455 0.00 0.00 0.00 2.66
711 1054 3.988517 GAGGACGTGTTGGAAAACTCTAG 59.011 47.826 0.00 0.00 0.00 2.43
717 1060 6.114767 ACGTGTTGGAAAACTCTAGGTTTAA 58.885 36.000 9.01 0.40 46.18 1.52
718 1061 6.598850 ACGTGTTGGAAAACTCTAGGTTTAAA 59.401 34.615 9.01 0.00 46.18 1.52
719 1062 7.121020 ACGTGTTGGAAAACTCTAGGTTTAAAA 59.879 33.333 9.01 3.68 46.18 1.52
720 1063 8.132995 CGTGTTGGAAAACTCTAGGTTTAAAAT 58.867 33.333 9.01 0.00 46.18 1.82
721 1064 9.811995 GTGTTGGAAAACTCTAGGTTTAAAATT 57.188 29.630 9.01 0.00 46.18 1.82
833 1177 2.679837 GCAACTGATCCCACTACATGTG 59.320 50.000 9.11 0.93 45.80 3.21
896 1240 4.279659 GCTTATAAATGCACGTACAAGCC 58.720 43.478 9.37 0.00 32.88 4.35
940 1284 5.356190 CACTGCAGATTCCACAATATCAAGT 59.644 40.000 23.35 0.00 0.00 3.16
979 1324 0.600057 GGAAGCCAAGTGAGCAAAGG 59.400 55.000 0.00 0.00 0.00 3.11
1050 1395 0.809385 TCGTTCTCGTCATCACCTCC 59.191 55.000 0.00 0.00 38.33 4.30
1111 1456 4.314440 GACGGTGCCTGCAGGACA 62.314 66.667 37.21 28.21 37.39 4.02
1194 1539 4.664677 GCGGCGCCGGACATATCT 62.665 66.667 45.81 0.00 40.19 1.98
1261 1606 4.221041 AGCATCACTGATCTCATCATCGAT 59.779 41.667 0.00 0.00 38.85 3.59
1267 1612 5.744819 CACTGATCTCATCATCGATATCAGC 59.255 44.000 23.95 1.81 44.47 4.26
1268 1613 5.653330 ACTGATCTCATCATCGATATCAGCT 59.347 40.000 23.95 13.84 44.47 4.24
1269 1614 6.153170 ACTGATCTCATCATCGATATCAGCTT 59.847 38.462 23.95 10.44 44.47 3.74
1270 1615 6.932947 TGATCTCATCATCGATATCAGCTTT 58.067 36.000 0.00 0.00 33.59 3.51
1303 1648 4.276678 TGCCTATCTTATGCTGTCATTTGC 59.723 41.667 0.00 0.00 34.22 3.68
1318 1663 5.048083 TGTCATTTGCCAACATTTCTCTACC 60.048 40.000 0.00 0.00 0.00 3.18
1325 1670 4.324267 CCAACATTTCTCTACCCGACTTT 58.676 43.478 0.00 0.00 0.00 2.66
1349 1694 4.094442 CCAAACTAGATTCCTAACAACGGC 59.906 45.833 0.00 0.00 0.00 5.68
1353 1698 2.618053 AGATTCCTAACAACGGCGAAG 58.382 47.619 16.62 7.98 0.00 3.79
1354 1699 2.028385 AGATTCCTAACAACGGCGAAGT 60.028 45.455 16.62 8.75 0.00 3.01
1364 1813 0.460284 ACGGCGAAGTGATGTGATCC 60.460 55.000 16.62 0.00 0.00 3.36
1377 1826 6.071728 AGTGATGTGATCCATTTTTCTCCAAC 60.072 38.462 0.00 0.00 32.56 3.77
1395 1844 3.304659 CCAACGTGAAAGTGGATTTGAGG 60.305 47.826 0.00 0.00 0.00 3.86
1419 1868 3.004752 AGTCCCTGGTCAATAATGCAC 57.995 47.619 0.00 0.00 0.00 4.57
1425 1874 4.165779 CCTGGTCAATAATGCACGTTTTC 58.834 43.478 0.00 0.00 0.00 2.29
1442 1891 4.368315 GTTTTCCGTCTGCAATTTCCTTT 58.632 39.130 0.00 0.00 0.00 3.11
1443 1892 3.915437 TTCCGTCTGCAATTTCCTTTC 57.085 42.857 0.00 0.00 0.00 2.62
1444 1893 3.140325 TCCGTCTGCAATTTCCTTTCT 57.860 42.857 0.00 0.00 0.00 2.52
1459 1908 2.612212 CCTTTCTTATGTATTGCCGCGT 59.388 45.455 4.92 0.00 0.00 6.01
1460 1909 3.805422 CCTTTCTTATGTATTGCCGCGTA 59.195 43.478 4.92 0.00 0.00 4.42
1497 1946 6.459670 ACGACACACATACCATAATGAGTA 57.540 37.500 0.00 0.00 30.78 2.59
1498 1947 7.050970 ACGACACACATACCATAATGAGTAT 57.949 36.000 0.00 0.00 30.78 2.12
1499 1948 8.173542 ACGACACACATACCATAATGAGTATA 57.826 34.615 0.00 0.00 30.78 1.47
1501 1950 9.639601 CGACACACATACCATAATGAGTATATT 57.360 33.333 0.00 0.00 30.78 1.28
1533 1996 8.071177 AGTTCCCTTGAATTTATCTCCAATTG 57.929 34.615 0.00 0.00 31.98 2.32
1537 2000 7.559897 TCCCTTGAATTTATCTCCAATTGTACC 59.440 37.037 4.43 0.00 0.00 3.34
1546 2009 4.894784 TCTCCAATTGTACCTGTCTTGAC 58.105 43.478 4.43 0.00 0.00 3.18
1563 2026 9.495572 CTGTCTTGACTTCCTAATTTAGACTTT 57.504 33.333 4.96 0.00 33.67 2.66
1590 2139 6.515272 TTTATTTGCAATCTCCTTCAGGTC 57.485 37.500 0.00 0.00 36.34 3.85
1591 2140 2.496899 TTGCAATCTCCTTCAGGTCC 57.503 50.000 0.00 0.00 36.34 4.46
1597 2146 2.060050 TCTCCTTCAGGTCCGATCTC 57.940 55.000 0.00 0.00 36.34 2.75
1603 2152 0.466372 TCAGGTCCGATCTCAGCGAT 60.466 55.000 0.00 0.00 34.25 4.58
1634 2200 7.386573 TCTTCGTTCTAAAATACTCAACATGCA 59.613 33.333 0.00 0.00 0.00 3.96
1645 2211 8.447787 AATACTCAACATGCAAACGTAATTTC 57.552 30.769 0.00 0.00 0.00 2.17
1678 2244 8.388103 ACATTTCATTAGATTACGTTACAGTGC 58.612 33.333 0.00 0.00 0.00 4.40
1679 2245 7.892778 TTTCATTAGATTACGTTACAGTGCA 57.107 32.000 0.00 0.00 0.00 4.57
1680 2246 8.487313 TTTCATTAGATTACGTTACAGTGCAT 57.513 30.769 0.00 0.00 0.00 3.96
1681 2247 7.694388 TCATTAGATTACGTTACAGTGCATC 57.306 36.000 0.00 0.00 0.00 3.91
1682 2248 6.700081 TCATTAGATTACGTTACAGTGCATCC 59.300 38.462 0.00 0.00 0.00 3.51
1683 2249 4.737855 AGATTACGTTACAGTGCATCCT 57.262 40.909 0.00 0.00 0.00 3.24
1684 2250 5.847111 AGATTACGTTACAGTGCATCCTA 57.153 39.130 0.00 0.00 0.00 2.94
1685 2251 6.216801 AGATTACGTTACAGTGCATCCTAA 57.783 37.500 0.00 0.00 0.00 2.69
1686 2252 6.817184 AGATTACGTTACAGTGCATCCTAAT 58.183 36.000 0.00 0.00 0.00 1.73
1687 2253 6.701841 AGATTACGTTACAGTGCATCCTAATG 59.298 38.462 0.00 0.00 35.87 1.90
1688 2254 4.465632 ACGTTACAGTGCATCCTAATGA 57.534 40.909 0.00 0.00 34.61 2.57
1689 2255 5.023533 ACGTTACAGTGCATCCTAATGAT 57.976 39.130 0.00 0.00 34.61 2.45
1698 2264 2.434428 CATCCTAATGATGCAGAGGGC 58.566 52.381 0.00 0.00 44.16 5.19
1699 2265 1.811778 TCCTAATGATGCAGAGGGCT 58.188 50.000 0.00 0.00 45.15 5.19
1700 2266 1.419012 TCCTAATGATGCAGAGGGCTG 59.581 52.381 0.00 0.00 45.15 4.85
1701 2267 1.544982 CCTAATGATGCAGAGGGCTGG 60.545 57.143 0.00 0.00 45.15 4.85
1702 2268 0.475475 TAATGATGCAGAGGGCTGGG 59.525 55.000 0.00 0.00 45.15 4.45
1703 2269 2.294170 AATGATGCAGAGGGCTGGGG 62.294 60.000 0.00 0.00 45.15 4.96
1704 2270 3.415087 GATGCAGAGGGCTGGGGT 61.415 66.667 0.00 0.00 45.15 4.95
1705 2271 2.943265 ATGCAGAGGGCTGGGGTT 60.943 61.111 0.00 0.00 45.15 4.11
1706 2272 2.505364 GATGCAGAGGGCTGGGGTTT 62.505 60.000 0.00 0.00 45.15 3.27
1707 2273 1.214305 ATGCAGAGGGCTGGGGTTTA 61.214 55.000 0.00 0.00 45.15 2.01
1708 2274 1.382629 GCAGAGGGCTGGGGTTTAA 59.617 57.895 0.00 0.00 42.53 1.52
1709 2275 0.251608 GCAGAGGGCTGGGGTTTAAA 60.252 55.000 0.00 0.00 42.53 1.52
1710 2276 1.545841 CAGAGGGCTGGGGTTTAAAC 58.454 55.000 9.98 9.98 38.51 2.01
1711 2277 1.891011 CAGAGGGCTGGGGTTTAAACC 60.891 57.143 26.45 26.45 39.69 3.27
1712 2278 4.228649 CAGAGGGCTGGGGTTTAAACCT 62.229 54.545 31.25 14.01 40.95 3.50
1772 2339 7.141363 ACAAAGTTACATCATGAAGCACTTTC 58.859 34.615 18.84 1.14 32.07 2.62
1776 2343 6.435277 AGTTACATCATGAAGCACTTTCCATT 59.565 34.615 0.00 0.00 34.77 3.16
1777 2344 5.320549 ACATCATGAAGCACTTTCCATTC 57.679 39.130 0.00 0.00 34.77 2.67
1778 2345 4.159135 ACATCATGAAGCACTTTCCATTCC 59.841 41.667 0.00 0.00 34.77 3.01
1779 2346 3.091545 TCATGAAGCACTTTCCATTCCC 58.908 45.455 0.00 0.00 34.77 3.97
1780 2347 2.978156 TGAAGCACTTTCCATTCCCT 57.022 45.000 0.00 0.00 34.77 4.20
1782 2349 4.380843 TGAAGCACTTTCCATTCCCTAA 57.619 40.909 0.00 0.00 34.77 2.69
1783 2350 4.335416 TGAAGCACTTTCCATTCCCTAAG 58.665 43.478 0.00 0.00 34.77 2.18
1784 2351 4.042809 TGAAGCACTTTCCATTCCCTAAGA 59.957 41.667 0.00 0.00 34.77 2.10
1786 2353 4.998051 AGCACTTTCCATTCCCTAAGAAA 58.002 39.130 0.00 0.00 38.21 2.52
1787 2354 5.393866 AGCACTTTCCATTCCCTAAGAAAA 58.606 37.500 0.00 0.00 38.21 2.29
1788 2355 5.478332 AGCACTTTCCATTCCCTAAGAAAAG 59.522 40.000 0.00 0.00 38.21 2.27
1789 2356 5.714047 CACTTTCCATTCCCTAAGAAAAGC 58.286 41.667 0.00 0.00 38.21 3.51
1790 2357 5.243730 CACTTTCCATTCCCTAAGAAAAGCA 59.756 40.000 0.00 0.00 38.21 3.91
1791 2358 5.243954 ACTTTCCATTCCCTAAGAAAAGCAC 59.756 40.000 0.00 0.00 38.21 4.40
1792 2359 4.657814 TCCATTCCCTAAGAAAAGCACT 57.342 40.909 0.00 0.00 38.21 4.40
1794 2361 5.393866 TCCATTCCCTAAGAAAAGCACTTT 58.606 37.500 0.00 0.00 38.21 2.66
1795 2362 5.476945 TCCATTCCCTAAGAAAAGCACTTTC 59.523 40.000 0.00 3.70 43.36 2.62
1796 2363 5.336770 CCATTCCCTAAGAAAAGCACTTTCC 60.337 44.000 7.47 0.00 43.98 3.13
1797 2364 4.447138 TCCCTAAGAAAAGCACTTTCCA 57.553 40.909 7.47 0.00 43.98 3.53
1798 2365 4.998051 TCCCTAAGAAAAGCACTTTCCAT 58.002 39.130 7.47 1.68 43.98 3.41
1799 2366 4.766891 TCCCTAAGAAAAGCACTTTCCATG 59.233 41.667 7.47 0.00 43.98 3.66
1800 2367 4.766891 CCCTAAGAAAAGCACTTTCCATGA 59.233 41.667 0.00 0.00 43.98 3.07
1801 2368 5.420104 CCCTAAGAAAAGCACTTTCCATGAT 59.580 40.000 0.00 0.00 43.98 2.45
1802 2369 6.327934 CCTAAGAAAAGCACTTTCCATGATG 58.672 40.000 0.00 0.00 43.98 3.07
1803 2370 6.151648 CCTAAGAAAAGCACTTTCCATGATGA 59.848 38.462 0.00 0.00 43.98 2.92
1804 2371 6.600882 AAGAAAAGCACTTTCCATGATGAT 57.399 33.333 0.00 0.00 43.98 2.45
1805 2372 7.707624 AAGAAAAGCACTTTCCATGATGATA 57.292 32.000 0.00 0.00 43.98 2.15
1806 2373 7.893124 AGAAAAGCACTTTCCATGATGATAT 57.107 32.000 0.00 0.00 43.98 1.63
1807 2374 8.985315 AGAAAAGCACTTTCCATGATGATATA 57.015 30.769 0.00 0.00 43.98 0.86
1808 2375 9.412460 AGAAAAGCACTTTCCATGATGATATAA 57.588 29.630 0.00 0.00 43.98 0.98
1809 2376 9.674824 GAAAAGCACTTTCCATGATGATATAAG 57.325 33.333 0.00 0.00 37.98 1.73
1810 2377 8.757982 AAAGCACTTTCCATGATGATATAAGT 57.242 30.769 0.00 0.00 0.00 2.24
1811 2378 9.851686 AAAGCACTTTCCATGATGATATAAGTA 57.148 29.630 0.00 0.00 0.00 2.24
1812 2379 9.851686 AAGCACTTTCCATGATGATATAAGTAA 57.148 29.630 0.00 0.00 0.00 2.24
1813 2380 9.277783 AGCACTTTCCATGATGATATAAGTAAC 57.722 33.333 0.00 0.00 0.00 2.50
1814 2381 9.056005 GCACTTTCCATGATGATATAAGTAACA 57.944 33.333 0.00 0.00 0.00 2.41
1839 2406 7.971168 CAGTATGTGTTAGTTTTGTTGAACCAA 59.029 33.333 0.00 0.00 0.00 3.67
1845 2412 9.180678 GTGTTAGTTTTGTTGAACCAATATCAG 57.819 33.333 0.00 0.00 0.00 2.90
1846 2413 8.908903 TGTTAGTTTTGTTGAACCAATATCAGT 58.091 29.630 0.00 0.00 0.00 3.41
1851 2418 8.974408 GTTTTGTTGAACCAATATCAGTTAACC 58.026 33.333 0.88 0.00 0.00 2.85
1930 2527 6.202954 GTCGAAATGGATATTGGACCACTAAG 59.797 42.308 0.00 0.00 39.06 2.18
1959 2556 8.833493 TGCATATCTTGATGAAGTCAAAGTATG 58.167 33.333 12.74 12.74 45.74 2.39
1975 2572 8.730427 GTCAAAGTATGTTGTGTTAACGAAAAG 58.270 33.333 0.26 0.00 0.00 2.27
1979 2576 5.838531 ATGTTGTGTTAACGAAAAGGGAA 57.161 34.783 0.26 0.00 0.00 3.97
1980 2577 5.238006 TGTTGTGTTAACGAAAAGGGAAG 57.762 39.130 0.26 0.00 0.00 3.46
1982 2579 3.215975 TGTGTTAACGAAAAGGGAAGGG 58.784 45.455 0.26 0.00 0.00 3.95
1983 2580 2.030540 GTGTTAACGAAAAGGGAAGGGC 60.031 50.000 0.26 0.00 0.00 5.19
1985 2582 0.772384 TAACGAAAAGGGAAGGGCCA 59.228 50.000 6.18 0.00 38.95 5.36
1986 2583 0.114364 AACGAAAAGGGAAGGGCCAT 59.886 50.000 6.18 0.00 38.95 4.40
1987 2584 0.323451 ACGAAAAGGGAAGGGCCATC 60.323 55.000 6.18 2.19 38.95 3.51
1988 2585 0.034089 CGAAAAGGGAAGGGCCATCT 60.034 55.000 6.18 0.00 38.95 2.90
1989 2586 1.616994 CGAAAAGGGAAGGGCCATCTT 60.617 52.381 6.18 0.00 38.95 2.40
1990 2587 1.827344 GAAAAGGGAAGGGCCATCTTG 59.173 52.381 6.18 0.00 38.95 3.02
1991 2588 0.786435 AAAGGGAAGGGCCATCTTGT 59.214 50.000 6.18 0.00 38.95 3.16
1993 2590 1.216990 AGGGAAGGGCCATCTTGTAG 58.783 55.000 6.18 0.00 38.95 2.74
1995 2592 1.141858 GGGAAGGGCCATCTTGTAGAG 59.858 57.143 6.18 0.00 38.95 2.43
1996 2593 1.475930 GGAAGGGCCATCTTGTAGAGC 60.476 57.143 6.18 0.00 36.34 4.09
2021 2629 7.599171 CAAGGACCGTTGAATTAATTTAAGGT 58.401 34.615 18.41 18.33 0.00 3.50
2057 2665 1.001633 AGCTGAAGGCCAAAATGCAAG 59.998 47.619 5.01 0.00 43.05 4.01
2068 2676 4.621034 GCCAAAATGCAAGTACACATACAC 59.379 41.667 0.00 0.00 33.30 2.90
2097 2705 8.644374 TTAAGAAACATGTTGGCCTATTAACT 57.356 30.769 12.82 0.00 0.00 2.24
2098 2706 6.759497 AGAAACATGTTGGCCTATTAACTC 57.241 37.500 12.82 1.08 0.00 3.01
2100 2708 4.481368 ACATGTTGGCCTATTAACTCGA 57.519 40.909 3.32 0.00 0.00 4.04
2101 2709 4.839121 ACATGTTGGCCTATTAACTCGAA 58.161 39.130 3.32 0.00 0.00 3.71
2118 2726 6.533819 ACTCGAAATCGTTACAAAATGTCA 57.466 33.333 2.41 0.00 40.80 3.58
2120 2728 6.422701 ACTCGAAATCGTTACAAAATGTCAGA 59.577 34.615 2.41 0.00 40.80 3.27
2137 2745 8.716674 AATGTCAGATTAATTATTGCCCTGAT 57.283 30.769 4.61 0.00 32.72 2.90
2139 2747 8.169977 TGTCAGATTAATTATTGCCCTGATTC 57.830 34.615 4.61 0.00 32.72 2.52
2141 2749 6.430925 TCAGATTAATTATTGCCCTGATTCGG 59.569 38.462 0.00 0.00 0.00 4.30
2156 2764 5.935789 CCTGATTCGGTTACACTTCCTTTTA 59.064 40.000 0.00 0.00 0.00 1.52
2162 2770 6.440436 TCGGTTACACTTCCTTTTATTTTGC 58.560 36.000 0.00 0.00 0.00 3.68
2163 2771 6.263617 TCGGTTACACTTCCTTTTATTTTGCT 59.736 34.615 0.00 0.00 0.00 3.91
2184 2792 4.873259 GCTAAAAGGATCTGAACTGAGTCC 59.127 45.833 0.00 0.00 0.00 3.85
2188 2796 5.511386 AAGGATCTGAACTGAGTCCATTT 57.489 39.130 0.00 0.00 0.00 2.32
2196 2804 8.134202 TCTGAACTGAGTCCATTTCATAACTA 57.866 34.615 0.00 0.00 39.94 2.24
2197 2805 8.593679 TCTGAACTGAGTCCATTTCATAACTAA 58.406 33.333 0.00 0.00 39.94 2.24
2198 2806 8.777865 TGAACTGAGTCCATTTCATAACTAAG 57.222 34.615 0.00 0.00 37.14 2.18
2199 2807 8.593679 TGAACTGAGTCCATTTCATAACTAAGA 58.406 33.333 0.00 0.00 37.14 2.10
2200 2808 9.092876 GAACTGAGTCCATTTCATAACTAAGAG 57.907 37.037 0.00 0.00 33.64 2.85
2201 2809 7.044798 ACTGAGTCCATTTCATAACTAAGAGC 58.955 38.462 0.00 0.00 0.00 4.09
2202 2810 6.946340 TGAGTCCATTTCATAACTAAGAGCA 58.054 36.000 0.00 0.00 0.00 4.26
2203 2811 6.818644 TGAGTCCATTTCATAACTAAGAGCAC 59.181 38.462 0.00 0.00 0.00 4.40
2204 2812 6.116126 AGTCCATTTCATAACTAAGAGCACC 58.884 40.000 0.00 0.00 0.00 5.01
2205 2813 6.069963 AGTCCATTTCATAACTAAGAGCACCT 60.070 38.462 0.00 0.00 0.00 4.00
2206 2814 6.258947 GTCCATTTCATAACTAAGAGCACCTC 59.741 42.308 0.00 0.00 0.00 3.85
2207 2815 5.529060 CCATTTCATAACTAAGAGCACCTCC 59.471 44.000 0.00 0.00 0.00 4.30
2208 2816 5.755409 TTTCATAACTAAGAGCACCTCCA 57.245 39.130 0.00 0.00 0.00 3.86
2209 2817 5.344743 TTCATAACTAAGAGCACCTCCAG 57.655 43.478 0.00 0.00 0.00 3.86
2210 2818 3.133003 TCATAACTAAGAGCACCTCCAGC 59.867 47.826 0.00 0.00 0.00 4.85
2211 2819 0.615850 AACTAAGAGCACCTCCAGCC 59.384 55.000 0.00 0.00 0.00 4.85
2212 2820 1.142748 CTAAGAGCACCTCCAGCCG 59.857 63.158 0.00 0.00 0.00 5.52
2213 2821 1.608717 CTAAGAGCACCTCCAGCCGT 61.609 60.000 0.00 0.00 0.00 5.68
2214 2822 1.192146 TAAGAGCACCTCCAGCCGTT 61.192 55.000 0.00 0.00 0.00 4.44
2215 2823 2.738213 AAGAGCACCTCCAGCCGTTG 62.738 60.000 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.495331 TCATGGTAATGGCGGCAATAAT 58.505 40.909 18.31 5.42 34.30 1.28
1 2 2.937519 TCATGGTAATGGCGGCAATAA 58.062 42.857 18.31 0.67 34.30 1.40
2 3 2.647683 TCATGGTAATGGCGGCAATA 57.352 45.000 18.31 9.75 34.30 1.90
3 4 1.682854 CTTCATGGTAATGGCGGCAAT 59.317 47.619 18.31 11.08 34.30 3.56
16 17 2.991190 GCATTGCAACAAGACTTCATGG 59.009 45.455 0.00 0.00 0.00 3.66
39 43 2.614481 GCATGTCCTTTCTACCGGTTGA 60.614 50.000 15.04 15.04 0.00 3.18
41 45 1.349688 TGCATGTCCTTTCTACCGGTT 59.650 47.619 15.04 0.00 0.00 4.44
45 49 3.378427 GGAATGTGCATGTCCTTTCTACC 59.622 47.826 0.00 0.00 0.00 3.18
58 62 1.452110 CGAGGTTCATGGAATGTGCA 58.548 50.000 0.00 0.00 46.80 4.57
124 128 2.609747 GATGTGCTCATAGGGGTAGGA 58.390 52.381 0.32 0.00 34.06 2.94
129 133 0.319728 CTCGGATGTGCTCATAGGGG 59.680 60.000 0.32 0.00 34.06 4.79
177 181 3.181496 GGGCAACTAAGTGCATCTTTAGC 60.181 47.826 12.69 9.21 46.81 3.09
181 185 1.355720 AGGGGCAACTAAGTGCATCTT 59.644 47.619 0.00 0.00 46.81 2.40
196 203 0.755327 AGGAAACACACACAAGGGGC 60.755 55.000 0.00 0.00 0.00 5.80
212 496 4.390129 AGTGAAGTGAAGACCTAGAGGA 57.610 45.455 1.60 0.00 38.94 3.71
231 515 2.050144 TGAAGGACAAGGCAGAGAAGT 58.950 47.619 0.00 0.00 0.00 3.01
232 516 2.038295 AGTGAAGGACAAGGCAGAGAAG 59.962 50.000 0.00 0.00 0.00 2.85
233 517 2.050144 AGTGAAGGACAAGGCAGAGAA 58.950 47.619 0.00 0.00 0.00 2.87
234 518 1.722034 AGTGAAGGACAAGGCAGAGA 58.278 50.000 0.00 0.00 0.00 3.10
235 519 3.902881 ATAGTGAAGGACAAGGCAGAG 57.097 47.619 0.00 0.00 0.00 3.35
236 520 5.957771 AATATAGTGAAGGACAAGGCAGA 57.042 39.130 0.00 0.00 0.00 4.26
262 552 5.340891 AGTGCCTCTTATATGTCCTCCTA 57.659 43.478 0.00 0.00 0.00 2.94
270 560 6.000219 ACTTGCCATTAGTGCCTCTTATATG 59.000 40.000 0.00 0.00 0.00 1.78
289 579 0.237498 GTCGGCACCTTTACACTTGC 59.763 55.000 0.00 0.00 0.00 4.01
291 581 1.589803 GTGTCGGCACCTTTACACTT 58.410 50.000 9.56 0.00 39.27 3.16
331 621 1.446445 CGATTGGGTTCCGCGTACA 60.446 57.895 4.92 0.00 0.00 2.90
332 622 2.169146 CCGATTGGGTTCCGCGTAC 61.169 63.158 4.92 2.25 0.00 3.67
449 741 7.113965 GCATGTTCATTTCATTTCATCCGATAC 59.886 37.037 0.00 0.00 0.00 2.24
467 759 2.689471 GCCTAATCCACATGCATGTTCA 59.311 45.455 29.48 18.62 39.39 3.18
491 783 3.930336 AGGATATACACATCCACGCATG 58.070 45.455 5.02 0.00 46.04 4.06
496 788 7.118825 CACATGATCAAGGATATACACATCCAC 59.881 40.741 0.00 0.00 46.04 4.02
549 849 4.630940 AGTTTGTCGTCGTTGGAACTTAAA 59.369 37.500 0.00 0.00 0.00 1.52
609 919 4.764823 TGAAGTGTGTTTCTTGGTGAGTTT 59.235 37.500 0.00 0.00 0.00 2.66
612 922 4.963276 TTGAAGTGTGTTTCTTGGTGAG 57.037 40.909 0.00 0.00 0.00 3.51
613 923 4.157656 CCTTTGAAGTGTGTTTCTTGGTGA 59.842 41.667 0.00 0.00 0.00 4.02
618 951 6.834168 TCTTTCCTTTGAAGTGTGTTTCTT 57.166 33.333 0.00 0.00 0.00 2.52
664 997 2.437413 CATCCATGGCTCCATCTCATG 58.563 52.381 6.96 0.00 38.30 3.07
833 1177 2.285083 TGCCCACGCTGAATTGTATAC 58.715 47.619 0.00 0.00 35.36 1.47
861 1205 2.107950 TATAAGCCAAGCGTGCAAGT 57.892 45.000 0.59 0.00 0.00 3.16
896 1240 0.105593 ATGATGAGCTGCACCCTACG 59.894 55.000 1.02 0.00 0.00 3.51
1181 1526 2.154854 ATCAACAGATATGTCCGGCG 57.845 50.000 0.00 0.00 0.00 6.46
1194 1539 2.427453 GAGCCTCTTCGACCTATCAACA 59.573 50.000 0.00 0.00 0.00 3.33
1261 1606 3.982576 CATGCATGCAGAAAGCTGATA 57.017 42.857 26.69 0.00 45.17 2.15
1303 1648 3.611766 AGTCGGGTAGAGAAATGTTGG 57.388 47.619 0.00 0.00 0.00 3.77
1318 1663 4.833390 AGGAATCTAGTTTGGAAAGTCGG 58.167 43.478 0.00 0.00 0.00 4.79
1325 1670 5.484715 CCGTTGTTAGGAATCTAGTTTGGA 58.515 41.667 0.00 0.00 0.00 3.53
1349 1694 6.187125 AGAAAAATGGATCACATCACTTCG 57.813 37.500 0.00 0.00 39.40 3.79
1353 1698 5.902613 TGGAGAAAAATGGATCACATCAC 57.097 39.130 0.00 0.00 39.40 3.06
1354 1699 5.106197 CGTTGGAGAAAAATGGATCACATCA 60.106 40.000 0.00 0.00 39.40 3.07
1364 1813 4.739716 CCACTTTCACGTTGGAGAAAAATG 59.260 41.667 0.00 1.39 33.35 2.32
1377 1826 5.238650 ACTTAACCTCAAATCCACTTTCACG 59.761 40.000 0.00 0.00 0.00 4.35
1395 1844 4.947388 TGCATTATTGACCAGGGACTTAAC 59.053 41.667 0.00 0.00 34.60 2.01
1425 1874 3.923017 AAGAAAGGAAATTGCAGACGG 57.077 42.857 0.00 0.00 0.00 4.79
1438 1887 2.612212 ACGCGGCAATACATAAGAAAGG 59.388 45.455 12.47 0.00 0.00 3.11
1442 1891 3.720949 AGTACGCGGCAATACATAAGA 57.279 42.857 12.47 0.00 0.00 2.10
1443 1892 4.789095 AAAGTACGCGGCAATACATAAG 57.211 40.909 12.47 0.00 0.00 1.73
1444 1893 6.218019 AGATAAAGTACGCGGCAATACATAA 58.782 36.000 12.47 0.00 0.00 1.90
1459 1908 8.821147 ATGTGTGTCGTTTACAAGATAAAGTA 57.179 30.769 0.00 0.00 40.63 2.24
1460 1909 7.724305 ATGTGTGTCGTTTACAAGATAAAGT 57.276 32.000 0.00 0.00 40.63 2.66
1502 1951 8.807118 GGAGATAAATTCAAGGGAACTCTTTTT 58.193 33.333 0.00 0.00 42.68 1.94
1504 1953 7.470192 TGGAGATAAATTCAAGGGAACTCTTT 58.530 34.615 0.00 0.00 42.68 2.52
1527 1990 4.455877 GGAAGTCAAGACAGGTACAATTGG 59.544 45.833 10.83 0.00 0.00 3.16
1533 1996 8.529476 TCTAAATTAGGAAGTCAAGACAGGTAC 58.471 37.037 2.72 0.00 0.00 3.34
1537 2000 9.495572 AAAGTCTAAATTAGGAAGTCAAGACAG 57.504 33.333 2.72 0.00 35.65 3.51
1563 2026 7.153985 CCTGAAGGAGATTGCAAATAAAAACA 58.846 34.615 1.71 0.00 37.39 2.83
1590 2139 3.634568 AGAAAGTATCGCTGAGATCGG 57.365 47.619 0.00 0.00 40.66 4.18
1591 2140 3.661728 CGAAGAAAGTATCGCTGAGATCG 59.338 47.826 0.00 0.00 40.66 3.69
1597 2146 6.627690 TTTAGAACGAAGAAAGTATCGCTG 57.372 37.500 0.00 0.00 42.61 5.18
1661 2227 5.847111 AGGATGCACTGTAACGTAATCTA 57.153 39.130 0.00 0.00 0.00 1.98
1679 2245 2.040012 CAGCCCTCTGCATCATTAGGAT 59.960 50.000 0.00 0.00 44.83 3.24
1680 2246 1.419012 CAGCCCTCTGCATCATTAGGA 59.581 52.381 0.00 0.00 44.83 2.94
1681 2247 1.544982 CCAGCCCTCTGCATCATTAGG 60.545 57.143 0.00 0.00 44.83 2.69
1682 2248 1.544982 CCCAGCCCTCTGCATCATTAG 60.545 57.143 0.00 0.00 44.83 1.73
1683 2249 0.475475 CCCAGCCCTCTGCATCATTA 59.525 55.000 0.00 0.00 44.83 1.90
1684 2250 1.229359 CCCAGCCCTCTGCATCATT 59.771 57.895 0.00 0.00 44.83 2.57
1685 2251 2.764737 CCCCAGCCCTCTGCATCAT 61.765 63.158 0.00 0.00 44.83 2.45
1686 2252 3.414193 CCCCAGCCCTCTGCATCA 61.414 66.667 0.00 0.00 44.83 3.07
1687 2253 2.505364 AAACCCCAGCCCTCTGCATC 62.505 60.000 0.00 0.00 44.83 3.91
1688 2254 1.214305 TAAACCCCAGCCCTCTGCAT 61.214 55.000 0.00 0.00 44.83 3.96
1689 2255 1.431195 TTAAACCCCAGCCCTCTGCA 61.431 55.000 0.00 0.00 44.83 4.41
1690 2256 0.251608 TTTAAACCCCAGCCCTCTGC 60.252 55.000 0.00 0.00 39.00 4.26
1691 2257 1.545841 GTTTAAACCCCAGCCCTCTG 58.454 55.000 7.12 0.00 40.02 3.35
1692 2258 0.408309 GGTTTAAACCCCAGCCCTCT 59.592 55.000 24.50 0.00 43.43 3.69
1693 2259 2.971676 GGTTTAAACCCCAGCCCTC 58.028 57.895 24.50 0.00 43.43 4.30
1772 2339 5.336770 GGAAAGTGCTTTTCTTAGGGAATGG 60.337 44.000 12.04 0.00 43.81 3.16
1776 2343 4.447138 TGGAAAGTGCTTTTCTTAGGGA 57.553 40.909 12.04 0.00 43.81 4.20
1777 2344 4.766891 TCATGGAAAGTGCTTTTCTTAGGG 59.233 41.667 12.04 2.25 43.81 3.53
1778 2345 5.964958 TCATGGAAAGTGCTTTTCTTAGG 57.035 39.130 12.04 6.09 43.81 2.69
1779 2346 7.149569 TCATCATGGAAAGTGCTTTTCTTAG 57.850 36.000 12.04 4.99 43.81 2.18
1780 2347 7.707624 ATCATCATGGAAAGTGCTTTTCTTA 57.292 32.000 12.04 4.99 43.81 2.10
1782 2349 7.893124 ATATCATCATGGAAAGTGCTTTTCT 57.107 32.000 12.04 0.00 43.81 2.52
1783 2350 9.674824 CTTATATCATCATGGAAAGTGCTTTTC 57.325 33.333 0.00 5.91 43.64 2.29
1784 2351 9.193806 ACTTATATCATCATGGAAAGTGCTTTT 57.806 29.630 0.00 0.00 32.11 2.27
1786 2353 9.851686 TTACTTATATCATCATGGAAAGTGCTT 57.148 29.630 0.00 0.00 0.00 3.91
1787 2354 9.277783 GTTACTTATATCATCATGGAAAGTGCT 57.722 33.333 0.00 0.00 0.00 4.40
1788 2355 9.056005 TGTTACTTATATCATCATGGAAAGTGC 57.944 33.333 0.00 0.00 0.00 4.40
1807 2374 9.997482 CAACAAAACTAACACATACTGTTACTT 57.003 29.630 0.00 0.00 41.63 2.24
1808 2375 9.386010 TCAACAAAACTAACACATACTGTTACT 57.614 29.630 0.00 0.00 41.63 2.24
1809 2376 9.991388 TTCAACAAAACTAACACATACTGTTAC 57.009 29.630 0.00 0.00 41.63 2.50
1810 2377 9.991388 GTTCAACAAAACTAACACATACTGTTA 57.009 29.630 0.00 0.00 41.63 2.41
1811 2378 7.971722 GGTTCAACAAAACTAACACATACTGTT 59.028 33.333 0.00 0.00 45.57 3.16
1812 2379 7.121463 TGGTTCAACAAAACTAACACATACTGT 59.879 33.333 0.00 0.00 32.89 3.55
1813 2380 7.476667 TGGTTCAACAAAACTAACACATACTG 58.523 34.615 0.00 0.00 0.00 2.74
1814 2381 7.633193 TGGTTCAACAAAACTAACACATACT 57.367 32.000 0.00 0.00 0.00 2.12
1815 2382 8.865590 ATTGGTTCAACAAAACTAACACATAC 57.134 30.769 0.00 0.00 33.25 2.39
1882 2479 9.710979 CGACTTTCTTGTTTTATACTGTCAAAA 57.289 29.630 0.00 0.00 0.00 2.44
1895 2492 8.028938 CCAATATCCATTTCGACTTTCTTGTTT 58.971 33.333 0.00 0.00 0.00 2.83
1930 2527 6.872628 TTGACTTCATCAAGATATGCATCC 57.127 37.500 0.19 0.00 42.62 3.51
1959 2556 4.498513 CCCTTCCCTTTTCGTTAACACAAC 60.499 45.833 6.39 0.00 0.00 3.32
1975 2572 1.141858 CTCTACAAGATGGCCCTTCCC 59.858 57.143 0.00 0.00 0.00 3.97
1979 2576 1.289160 TTGCTCTACAAGATGGCCCT 58.711 50.000 0.00 0.00 33.24 5.19
1980 2577 3.882131 TTGCTCTACAAGATGGCCC 57.118 52.632 0.00 0.00 33.24 5.80
1988 2585 1.689813 TCAACGGTCCTTGCTCTACAA 59.310 47.619 0.00 0.00 36.62 2.41
1989 2586 1.334160 TCAACGGTCCTTGCTCTACA 58.666 50.000 0.00 0.00 0.00 2.74
1990 2587 2.450609 TTCAACGGTCCTTGCTCTAC 57.549 50.000 0.00 0.00 0.00 2.59
1991 2588 3.695830 AATTCAACGGTCCTTGCTCTA 57.304 42.857 0.00 0.00 0.00 2.43
1993 2590 4.965119 ATTAATTCAACGGTCCTTGCTC 57.035 40.909 0.00 0.00 0.00 4.26
1995 2592 6.530181 CCTTAAATTAATTCAACGGTCCTTGC 59.470 38.462 0.10 0.00 0.00 4.01
1996 2593 7.599171 ACCTTAAATTAATTCAACGGTCCTTG 58.401 34.615 0.10 0.00 0.00 3.61
2021 2629 5.453339 CCTTCAGCTCCTTTCGGTTATCATA 60.453 44.000 0.00 0.00 0.00 2.15
2027 2635 0.606673 GCCTTCAGCTCCTTTCGGTT 60.607 55.000 0.00 0.00 38.99 4.44
2028 2636 1.003233 GCCTTCAGCTCCTTTCGGT 60.003 57.895 0.00 0.00 38.99 4.69
2029 2637 1.746991 GGCCTTCAGCTCCTTTCGG 60.747 63.158 0.00 0.00 43.05 4.30
2030 2638 0.606401 TTGGCCTTCAGCTCCTTTCG 60.606 55.000 3.32 0.00 43.05 3.46
2031 2639 1.620822 TTTGGCCTTCAGCTCCTTTC 58.379 50.000 3.32 0.00 43.05 2.62
2087 2695 6.817270 TGTAACGATTTCGAGTTAATAGGC 57.183 37.500 7.01 0.00 43.02 3.93
2097 2705 6.772770 TCTGACATTTTGTAACGATTTCGA 57.227 33.333 7.01 0.00 43.02 3.71
2098 2706 9.536558 TTAATCTGACATTTTGTAACGATTTCG 57.463 29.630 0.00 0.00 46.33 3.46
2118 2726 6.306987 ACCGAATCAGGGCAATAATTAATCT 58.693 36.000 0.00 0.00 35.02 2.40
2120 2728 6.976934 AACCGAATCAGGGCAATAATTAAT 57.023 33.333 0.00 0.00 35.02 1.40
2137 2745 6.919115 GCAAAATAAAAGGAAGTGTAACCGAA 59.081 34.615 0.00 0.00 37.80 4.30
2139 2747 6.443792 AGCAAAATAAAAGGAAGTGTAACCG 58.556 36.000 0.00 0.00 37.80 4.44
2156 2764 7.449704 ACTCAGTTCAGATCCTTTTAGCAAAAT 59.550 33.333 0.00 0.00 0.00 1.82
2162 2770 6.042638 TGGACTCAGTTCAGATCCTTTTAG 57.957 41.667 0.00 0.00 0.00 1.85
2163 2771 6.627087 ATGGACTCAGTTCAGATCCTTTTA 57.373 37.500 0.00 0.00 0.00 1.52
2175 2783 7.550906 GCTCTTAGTTATGAAATGGACTCAGTT 59.449 37.037 0.00 0.00 33.54 3.16
2178 2786 6.818644 GTGCTCTTAGTTATGAAATGGACTCA 59.181 38.462 0.00 0.00 0.00 3.41
2184 2792 6.115446 TGGAGGTGCTCTTAGTTATGAAATG 58.885 40.000 0.00 0.00 0.00 2.32
2188 2796 3.133003 GCTGGAGGTGCTCTTAGTTATGA 59.867 47.826 0.00 0.00 0.00 2.15
2196 2804 2.520536 AACGGCTGGAGGTGCTCTT 61.521 57.895 0.00 0.00 0.00 2.85
2197 2805 2.925170 AACGGCTGGAGGTGCTCT 60.925 61.111 0.00 0.00 0.00 4.09
2198 2806 2.743928 CAACGGCTGGAGGTGCTC 60.744 66.667 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.