>input_sequence_86009
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----------------------------------------------------------------ATGAAGCTAGTGATGT
GCTTGTGCATCTTCATCGTTCTCGTCATCACCTCCTCGCCTATCGCGGTCTCCGGCGACCGTCCGCTGATGCTGGGCCGA
CGGTGCCTGCAGGACACCGTGGTCATCGGCGGCGGCCCAACCCCGACAGGGGCGAGCACCACAGGGACGTTGCCGCGTGA
CGCGGCGCCGGACATATCTGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTGA-------
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>chr7A_1_TraesCS7A01G348400
ATTATTGCCGCCATTACCAT---GAAGTCTTGTTGCAATGCTTCAACCGGTAGAAAGGACATGCACATTCCATGAACCTC
GGACCTACAAATTCCAGATCTATACATGGAGTACGTGCACACGCACTTCCTACCCCTATGAGCACATCCGAGAGACTGGC
CTCGTAGATCATGAGGATCTGCTAAAGATGCACTTA---GTTGCCCCTTGTGTGTGT-----------------------
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--------------TTCCTCTAGGTCTTCACTTCACTTCTCTGCCTTGTCCTTCACTA------TATTAAGTAGGAGGAC
ATATAAGAGGCACTAATGGCAAGTGTAAAGGTGCCGACACTTGAAACACATGGATGATGATGTACGCGGAACCCAATCGG
TCAACAC-TCGAAATGCCATGTGAGTCTGATAACACGCAGAAGTAGATTAAGGTTTGCAATGCGCGATGACTTGAAAA-G
GATGTTGCTGACTGTGTATTGTATCGGATGAAATGAAATGAACATGCATGTGGATTAGGCTGCATGCGTGGATGTGTATA
--------TCCTTGATCATGTGTTGAGTTGACTTATGCCGCATCAATTTT----TAAGTTCCAACGACGACAAACTCCAT
CGTGAAGTCAACATCT------AAAACATGATAAATGCAAACTC-----------------------ACCAAGAAACACA
CTTCAAAGGAAAGATGGATACGTACGTAAGGTAAAGCATGAGATGGAGCCATGGATGGTGAGAGG----------ACGTG
TTGGAAAACTCTAGGTTTAAAATTAACTACCTAACTGGTGCCG-AAGCTCACGTACGTCGGCTAGATGCATATATTTTTG
CAATGTCTCTAAACAAATAACTGGCCAAATCAGTGGCAACTGATCCCACTACATGTGTATACAATTCAGCGTGGGCAGAA
AAAAACTTGCACGCTTGGCTTATAAATGCACGTACAAGCCGTAGGGTGCAGCTCATCATCACTGCAGATTCCACAATATC
AAGTAGCTCGA-CGCTCCTCGCAGGGAAGCCAAGTGAGCAAAGGTAGACAGAGCTGTATTAGCCATGAAGCTAGTGATGT
GCTTGTGCATCTTCATCGTTCTCGTCATCACCTCCTCGCCTATCGCGGTCTCCGGCGACCGTCCGCTGATGCTGGGCCGA
CGGTGCCTGCAGGACACCGTGGTCATCGGCGGCGGCCCAACCCCGACAGGGGCGAGCACCACAGGGACGTTGCCGCGTGA
CGCGGCGCCGGACATATCTGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTGATCTCATC
ATCGATATCAGCTTTCTGCATGCATGCCTATCTTATGCTGTCATTTGCCAACATTTCTCTACCCGACTTTCCAAACTAGA
TTCCTAACAACGGCGAAGT-------------------------------------------------------------
-------------------------------------------GATGTGATCCATTTTTCTCCAACGTGAAAGTGGATTT
GAGGTTAAGTCCCTGGTCAATAATGCACGTTTTCCGTCTGCAATTTCCTTTCTTATGTATTGCCGCGTACTTTATCTTGT
AAACGACACACATACCATAATGAGTATATTAAA--------------AAGAGTTCCCTTGAATTTATCTCCAATTGTACC
TGTCTTGACTTCCTAATTTAGACTTTGTT----TT---------------------------------------------
-------------------------------------TATTTGCAATCTCCTTCAGGTCCGATCTCAGCGATACTTTCTT
CGTTCTAAAATAC-----------------TCAACATGCAAACGTAATTTCACAATTACATTTCATTAGATTACGTTACA
GTGCATCCTAATGATGCAGAGGGCTGGGGTTTAAACCTCCTTTAAAAAACAGATCACGTCACAAAAAAGACTACAAA-GT
TACATCATGAAGCACTTTCCATTCCCTAAGAAAAGCACTTTCCATGATGATATAAGTAACAGTATGTGTTAGTTTTGTTG
AACCAATATCAGTTAACCTTTAGATATCATTTGTTAGTTGGAG------------------------------ATCTATT
TTGACAGTATAAAACAAGAAAGTCGAAATGGATATTGGACCACTAAGGATGCATATCTTGATGAAGTCAAAGTATGTTGT
GTTAACGAAAAGGGAAGGGCCATCTTGTAGAGC-----------AAGGACCGTTGAATTAATTTAAGGTATGATAACCGA
AAGGAGCTGAAGGCCAAAATGCAAGTACACATACACTAATTAAGAAACATGTTGGCCTATTAACTCGAAATCGTTACAAA
ATGTCAGATTAATTATTGCCCTGATTCGGTTACACTTCCTTTTATTTTGCTAAAAGGATCTGAACTGAGTCCATTTCATA
ACTAAGAGCACCTCCAGCCGTTGGCCCACCCAGGGGGGCGCGTAAAATCGCCGCCT
>chr7B_5
----TTGCCGCCATTATCATGAAGAAGTATGGTCGCAATCCTCTGATCAGTAGAAAGGACAGGCACACTTCATGAACCTC
CATCCTAGAAATACCAGCTCTATACATGGGGTACGCGCGCACGCACTCACTATCCCTACGAGCATATCTGAGAAAATGGG
CCGGCAGATCATGAGAATCTACTAGAGATGCACTTATTAGTTACCCTTCGTATGTGTC----------------------
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----------------CCTCTAGGTCTTCACTTCC-----TTGCCTTGTCCTTCTCTA------TATTAAGCAGGAGGAT
ATATAAGAGGAACTAATGCCTAGTGTAAATGTGTCGACACTTGAAACGCATGGATGATGACATACGCGAAACCCAATCGG
TCAACACGTCGAAATGCCATGTGAGTCTGATAACACGCAGACGTAGATTAAGGTTTGCAATGCGCGATGACTTGAAAAAG
GATGTCGCTGAC--TGTATTATATCGGATGAAATGAAAGGAACATGCATGTGGAATAGGGTGGATTCCTGGATGTGTATA
TCCTTGTCTCCTTGATCATGTGTTGAGTTGACTTATACCGCATCAAGTAT----TAAGTTCCAATGACGATAAACTCCAT
CGTGAAGTCAACATCT------AAAACATGATAAATGCGAATACATAATATCATATCATGCCAAAATACCCAGAAGCACA
CTTCAAAGGAAAGATGGATACATACGTAAGGTAACGGATGAGATGGAGCCATGGATGGTGAGTGTGAGAGGACGTACGTG
TTGGAAAACCCTAAGTTTA-----AACTACCTAACTGGTGCCGAAAGCTCACGTACGTTGGCTAGACGCATATATTTTTG
CAATGTCTCTAAACAAATGACTGGCCAAATCAGTGGCAGCTGATCCCACTATATGCATACACAATTCAGTGTCGGCAGAA
AAAA-CTCGCACGCTTGGCTTATAAATGCACGTACAAGCTGTAGGGTGCAGCTCATCATCACTGCAGATTACACAGTATC
AAGCAGCTCGACCGCTCCTCGCAGCG-AGCTAAGTGAGCAAAGCTAGACAGACCTGTATTAGCCATGAAGCTAGTGATGT
GCTTGTGCGTCTTCATCATTCTCGTCATCGCCTCGTCGCCCATCCCGGTCTCCGGCGACCGTCCGCTGATGCTGGGCCGG
CGGTGGCTGCAGGACGCCGTGGTCATCGGCGGCAGCCCGACCACGACAGCGGCGAGCACCACAGGGACGTTGCCGCGTGA
CGCGGAGCCGGACATATCGGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTGATCTCATC
ATCGAGATCAG----CTGCATGCATGCCTATCTTATGCTGTCATTTGTCAACATTTCTCTACTCGACCTCCCAAACTAGA
TTCCTAACAACGGTGAATGCTGGTCTGGAGATTAGT--TCTCTTTCTCTCTCCCTATTTTTGTTTCCTAATAAATTGATG
TCCTGCGTGTGTGCGGAGTGTCTTAACCACTATACACCTACGCGATGTGATCAATTTTTCTCCAATGTGAAAGTGGATTT
GAGTTTAAGTCCCTGGTCAATGATGCAAGTTTTTCGGCTGCAAATTTCTTA--TATGTATTGTCGCGCTCTTTATCTTGT
AAACGACACACATACCATAATGAGTGAGTGTATTAAAAAGACAAGAGAAGAGTTCCCTTGAATTTATCTTCAATTCTACA
TGTCTTGATTTCCTAATTTAGGCTTCGTTATTATTTACTCCCTCCGTTCCATAATATAAGAAAGTTTTTAACACTACACT
ATGTAAATAACGTTCTTATATTATGGGACAGAGGGAGTATTTGCAATCTCATTCAGGTATGATCTTAGCGAGACTTTCTT
CGTTCTAAAATACATGGCATTTTATAGCATTCAACATGC-AACATAATTTGACAATTACATTTCAAAAGATTACGTTG--
-------------------------------------------------------------CAAAAAAGACTACAAAAGT
TACATCATGAAGCACTTTTCATGAAAAATATACTAATAATAG-----------------------GTGTTAGTTTTGTTT
AACCAGTATCAACTAACTTTTAGATATTATTTGTCAAGTTGGAGAAGCATGTCTGCACGCTTTCTGTGCTGTCATCTAAT
TTGACAGTATATAACAAGGAAGTCGAAATGGATATTGGACCACTAAAGATGCATATCTTAATGAAGTCAAAGTA------
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>chr7D_20
-------------------T---GAAGTCTTGTTGCAATGCTCCGACTAGTAGAAAGGATGGGCACATTCCATGAACCTC
GGACCTACAAATTCCGGATCTATACATAAGGTACGTGCACATGCACTCCCTATCCCCATGAGGACATCCAAGAGACCGAG
CCGACATATTATGAGGATCTTCTAGATATGCACTTA---CTCACCTCTTGTGTGTGTCCCATTTGGCGGAGGATGAAAAA
AAAACTGAGGTAGGGCGAACTCTAATCTAAATCATAAAAAAGTTTGATGCAAAACATTGTGCTACACATAAATGGTGAGC
ACTAATACTAATATATTTATGTGATCTAAACATAAAAGTACAAGATGAATGATGAGAGCTAGATGATTTCTCAAATATTA
CAAGTATGAATGCACATCTTGAGAAAAAACTAAATATACGATCTACAATCCAAGTACTGTCTTGAAACAATATATATGCT
TAGGAATACTTAACTGCCTCTGGCTCTTAACTGCC-----CTGCCTTGTCCTTCTCCGTACTACTATTAAGCAGGAGGAT
ATATAAGAGGCACTAATGCCTAGTGTAAAGGTGCCGACACTTGAAGCACATGGATGATGACATACGCGAAACCCAATCGG
TCAACATGTCGAAATGCCATGTGAGTCTGATAACACGCAGAAGTAGATTAAGGTTTGCAATGCGCGATGACTTGAAAAAG
GATTATGCTGAGTGTGTATTATATCGGATGAA-TGAAAGGAACATGCATGTGGATTAGGCTGGATGCCTGGATGTGTAGA
TCCTTGTCTCCTTGATCATGTGTTGAGTTGACTTATGCCACATCAATTAATTTCTAAGTTCCAACTACGACAAACTCCAT
CGTGAAGTCAACATCTAAATCCAAAACATGATAAATGTGAATACATAATATCATATCATGCCAAATCAACCAGAAACACA
CTTCAAAGGAAAGATGGATACGTACGTAAGGTAAAGGATGAGATGGAGCCATGGATGGTGAGAGG----------ACGTG
T----------------------------------------CG-AAGCTCACGTACGTCGGCTAGATGCACATATTTTTG
CAATGTCTCGAAACAAATAACTGGCCAAATCAGTGGCAGCTGATCCCACTACATGTATATACAATTCAGCGTGGGCAG-A
AAAA-CTTGCACGCTTGGCTTATAAATGGACGTACAAGC---AGGCTGCAGCTCATCATCACTGCAGATTCCACAATATC
AAGCAGCTCGACCGCTCCTCGCAGGGAAGCCAAGTGAGCAAAGCTAGACAGAGCTGTATTAGCCATGAAGCTAGTGATGT
GCTTGTGCATCTTCATCGTTCTCGTCATCACCGCGTCGCCTATCGCGGTCTCCGGTGACCGTCCGCTGATGCTGGGCCGA
CGGTGCCTGCAGGACGCCGTGGTCATCGGCGGCAGCCCAACCCCAACAGGGGCGAGCACCACAGGGACGTTGCCGCGTGA
CGCGGAGCCGGACATATCGGTTGATAGGTCGAAGAGGCTCAGCCCCGGGGGATCTAACCCCCAGCATCACTGATCTCATC
ATCGAGATCAG----CTGCATGCATGCCTATCTTATGGTGTCATTTGTCAACATTTCTCTACTCGACTTCCCAAACTAGA
TTCCTAACAACGGTGAATGCTGGTCCGGAGATTAATTCTCTCTTTCTCTCTCCCTATTTTTGTTTCCTAATAAATTGATG
TTCTGCGTGTGTGCAGAGTGTCTTAACCACTATACACCTACGCGATGTGATCAATTTTTCTCCAATATGAAAGTGGATTT
GAGTTTAAGTCCCTGGTCAATAATGCAAGTTTTTCGTCTGCAATTTTCTTA--TATGTATTGCCGCGCTCTTTATCTTGT
AAACGACACACATACCATAATGAGTGAGTGTACTAAAAACAGGAGAGAAGAGTTCCCTTGAATTTATCTTCAATTCTACA
TGTCTTGATTTCCTAATCTAGACTTGGTTATTATT---------------------------------------------
-------------------------------------TATTTGCAATCTCCTTCAGGTATGATCTTAGCTAGACTTTCTT
CGTTCTAAAATACATGGCATTTTATAGCATTCAACATGC-AACGTAATTTGACAATTACATTTCATAAGATTACGTTA--
-------------------------------------------------------------CAAAAAAGACTACAAA-GT
TACATCATGAAGCACTTTTCATGAAAAATATACTAATAA-----------------------TATGTGTTAGTTTTGTTT
AACCAGTATCAACTAACTTTTAGAAATTGTTTGTCAAGTTGGAGAAGCATGTCTGCACGCTTTCTGTGCCGTCATCTAAC
TTGACATTATATAACAAGAAAGTCGAAATAGATATTGGACCACTAAAGATGCATATCTTGATGAAGTCAAAGTATATTGT
GTTAACGAAAAAGGACCGTTCCCTGCCCAAAAAAAAAAACGAAAAAGGACCGTTGAATTAATTTAAGGCATGAT-----A
AAGGAGCTGAAGGCCAAAATGCAACTACACATACAATAATTAAGAAACATGTTGCCCTATTAACAAGGTATCGTTACAAA
ATGTCGGCTTAATTATTGCCCTGACTTGATTACACTTCCTTTTGTTTTGGGAAAAGGATCTGTACCGAGTCTATTCCATA
ACT-----------------------------------------------------
>SNPs
SSSS------------S-------------------------S-S---S------------S------------------
-----------------------------S-----------------S----S--------------------------S
-SS-S---------------S---S-----------------S-------------------------------------
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---------------S------------------SSSSSS--------------S----------------S-------S
------------------S-S---------------------------------------SS------S-----------
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--------------------S-----------------S-----------------------S----S------------
------------------------------------------------S-------------------------------
--------------------------------------S--SS---------------------------S---------
------------------------------------S-------------------------------------------
---------S---S-----SSSSS--------------------------------------------------------
--------------------------------------S-----------------S-----------------------
----S----------------------------------S----------------------------------------
---S---------------------------------------S------------------------------------
----------------------------------S---------------------------------------------
---------------S-----------------S----------------------------------------------
-----S------------S-------------------------------------------------------------
-----S-----SSSS--------------------------------S--------------S------S----------
-------------S---SS-------------------------------------------------------------
----------------------------------------------------S------------S--------------
---S-----------------------S-----S------------S---SSS--------------SS-----------
-------------------------SSS-SS-S------------------------------------S-----S---S
--------S----------------S------------------------------------------------------
----------------------------------------------------------SS-----S-----S--------
---------------------------------------S----------S---------------S-----------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
------------------S---SSSSS-SSS-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSS-----------------S
-----S-----SS----S---------S------S-SS-S-SS-----------------------------------S-
-----------S----------------------------------S----------------------------S----
-----------S---SS-SS-SSSSSSS-S-SS-----------------------------------S-----SSSSS-
------------------------S----------S------------------S---------SS-SS-----------
-----S-S----------------S-S-S--------------S-----SS-----------S--S-----S---S----
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_496
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----------------------------------------------------------------------------GTTG
CCCCTTGTGTGTGTTT----------------------------------------------------------------
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>reverse_2256
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---------------GCAGAGGGCTGGGGTTTAAA---------------------------------------------
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