Multiple sequence alignment - TraesCS7A01G330700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G330700 chr7A 100.000 2213 0 0 1 2213 483961248 483963460 0.000000e+00 4087.0
1 TraesCS7A01G330700 chr7A 93.510 1356 52 12 82 1415 499573275 499571934 0.000000e+00 1984.0
2 TraesCS7A01G330700 chr7A 93.458 321 18 3 1542 1861 499540434 499540116 7.150000e-130 473.0
3 TraesCS7A01G330700 chr7A 83.568 213 29 3 1000 1212 692313216 692313010 6.230000e-46 195.0
4 TraesCS7A01G330700 chr7D 88.263 639 40 8 888 1522 433013674 433014281 0.000000e+00 732.0
5 TraesCS7A01G330700 chr7D 89.130 230 18 7 381 608 433013107 433013331 1.670000e-71 279.0
6 TraesCS7A01G330700 chr7D 83.391 289 25 8 1786 2054 433014427 433014712 1.700000e-61 246.0
7 TraesCS7A01G330700 chr7D 83.214 280 29 12 620 889 433013375 433013646 7.900000e-60 241.0
8 TraesCS7A01G330700 chr7D 84.553 246 28 6 69 308 433012606 433012847 3.670000e-58 235.0
9 TraesCS7A01G330700 chr7D 100.000 36 0 0 28 63 433012543 433012578 1.420000e-07 67.6
10 TraesCS7A01G330700 chr7B 94.859 389 17 2 888 1275 449553381 449552995 2.430000e-169 604.0
11 TraesCS7A01G330700 chr7B 79.621 633 61 41 301 889 449554019 449553411 2.060000e-105 392.0
12 TraesCS7A01G330700 chr7B 84.681 235 31 4 82 311 449554444 449554210 1.710000e-56 230.0
13 TraesCS7A01G330700 chr7B 94.828 58 3 0 1306 1363 449552988 449552931 8.410000e-15 91.6
14 TraesCS7A01G330700 chr7B 90.323 62 0 4 2 63 449554537 449554482 2.360000e-10 76.8
15 TraesCS7A01G330700 chr1B 82.828 198 29 4 971 1164 639448314 639448510 2.920000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G330700 chr7A 483961248 483963460 2212 False 4087.00 4087 100.000000 1 2213 1 chr7A.!!$F1 2212
1 TraesCS7A01G330700 chr7A 499571934 499573275 1341 True 1984.00 1984 93.510000 82 1415 1 chr7A.!!$R2 1333
2 TraesCS7A01G330700 chr7D 433012543 433014712 2169 False 300.10 732 88.091833 28 2054 6 chr7D.!!$F1 2026
3 TraesCS7A01G330700 chr7B 449552931 449554537 1606 True 278.88 604 88.862400 2 1363 5 chr7B.!!$R1 1361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 178 1.535028 CTGCAATGGTTAGTGAACGCA 59.465 47.619 0.0 0.0 36.32 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 2075 0.103026 GATTCCAAGGGCGCATTTCC 59.897 55.0 10.83 0.0 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 88 7.661437 TGGTTATATGATCCATGTAGCACTTTC 59.339 37.037 0.00 0.00 0.00 2.62
67 90 8.715998 GTTATATGATCCATGTAGCACTTTCAG 58.284 37.037 0.00 0.00 0.00 3.02
121 146 6.873076 GGTTTCAATTTTCATAGCATCAACCA 59.127 34.615 0.00 0.00 31.05 3.67
143 171 3.073946 ACAAGGGTACTGCAATGGTTAGT 59.926 43.478 0.00 0.00 0.00 2.24
144 172 3.350219 AGGGTACTGCAATGGTTAGTG 57.650 47.619 0.00 0.00 0.00 2.74
149 177 1.535462 ACTGCAATGGTTAGTGAACGC 59.465 47.619 0.00 0.00 36.32 4.84
150 178 1.535028 CTGCAATGGTTAGTGAACGCA 59.465 47.619 0.00 0.00 36.32 5.24
162 190 8.609176 TGGTTAGTGAACGCAGATTATAAATTC 58.391 33.333 0.00 0.00 36.32 2.17
164 192 6.903883 AGTGAACGCAGATTATAAATTCGT 57.096 33.333 0.00 0.00 0.00 3.85
196 224 6.645827 CCAAAAATGTAATCATGTTCTGTGCA 59.354 34.615 0.00 0.00 31.00 4.57
215 250 2.223377 GCAAACGACTGAACGAGGAATT 59.777 45.455 0.00 0.00 37.03 2.17
225 260 4.651778 TGAACGAGGAATTGTGGAAGAAT 58.348 39.130 0.00 0.00 0.00 2.40
226 261 5.070001 TGAACGAGGAATTGTGGAAGAATT 58.930 37.500 0.00 0.00 43.11 2.17
227 262 5.534654 TGAACGAGGAATTGTGGAAGAATTT 59.465 36.000 0.00 0.00 40.20 1.82
260 296 8.446599 ACTTCCTTCGAATTTTCTTTCAGTAA 57.553 30.769 0.00 0.00 0.00 2.24
318 556 6.619744 TGATAAATTGCATCATGTGTCGTTT 58.380 32.000 0.00 0.00 0.00 3.60
395 641 4.100373 AGGGAATTGCTCTTCTCTGTACT 58.900 43.478 0.00 0.00 34.63 2.73
433 679 3.876309 TGAAGAACTTAAGCTGGGGTT 57.124 42.857 1.29 0.00 0.00 4.11
734 1020 7.201617 GCTACACATCAGTAACACCTATTTTCC 60.202 40.741 0.00 0.00 0.00 3.13
825 1117 9.101655 ACTACGAGTGTTAAAATTGTGTAACTT 57.898 29.630 0.00 0.00 38.04 2.66
1227 1556 4.631377 TCATCGTAGGAAAAACATGCTCTG 59.369 41.667 0.00 0.00 0.00 3.35
1276 1605 6.368243 GCTTCTAAACTAGTTACCTCACAACC 59.632 42.308 8.92 0.00 0.00 3.77
1294 1623 0.405585 CCAGAACCCAGAACCATGGT 59.594 55.000 13.00 13.00 38.81 3.55
1315 1644 8.685427 CATGGTTTGGTTTCTGTGATGATAATA 58.315 33.333 0.00 0.00 0.00 0.98
1367 1696 4.030913 TGGGTGGAGTCCAGAATTAGTAG 58.969 47.826 13.61 0.00 32.34 2.57
1374 1703 6.439375 TGGAGTCCAGAATTAGTAGTGCTTTA 59.561 38.462 8.12 0.00 0.00 1.85
1387 1719 6.765403 AGTAGTGCTTTAGTGTTTATGGTGA 58.235 36.000 0.00 0.00 0.00 4.02
1416 1748 5.992217 GGTGCCTGGAAGTTTGATATACTAG 59.008 44.000 0.00 0.00 0.00 2.57
1425 1757 9.134055 GGAAGTTTGATATACTAGTACTGGAGT 57.866 37.037 13.86 8.37 0.00 3.85
1466 1798 7.484641 CACGTTATTGCAGTTTGTTGCTATTAT 59.515 33.333 0.77 0.00 44.38 1.28
1467 1799 8.670135 ACGTTATTGCAGTTTGTTGCTATTATA 58.330 29.630 0.77 0.00 44.38 0.98
1468 1800 9.663904 CGTTATTGCAGTTTGTTGCTATTATAT 57.336 29.630 0.77 0.00 44.38 0.86
1506 1838 3.011566 TCACCAAGAACTTTGCAGGAA 57.988 42.857 0.00 0.00 0.00 3.36
1508 1840 2.689983 CACCAAGAACTTTGCAGGAACT 59.310 45.455 0.00 0.00 43.88 3.01
1522 1854 2.192263 AGGAACTCCCTGATCAACCTC 58.808 52.381 0.00 0.00 45.61 3.85
1523 1855 1.909302 GGAACTCCCTGATCAACCTCA 59.091 52.381 0.00 0.00 0.00 3.86
1524 1856 2.093235 GGAACTCCCTGATCAACCTCAG 60.093 54.545 0.00 0.00 41.93 3.35
1525 1857 2.630889 ACTCCCTGATCAACCTCAGA 57.369 50.000 0.00 0.00 44.48 3.27
1526 1858 2.183679 ACTCCCTGATCAACCTCAGAC 58.816 52.381 0.00 0.00 44.48 3.51
1527 1859 1.484240 CTCCCTGATCAACCTCAGACC 59.516 57.143 0.00 0.00 44.48 3.85
1528 1860 1.203300 TCCCTGATCAACCTCAGACCA 60.203 52.381 0.00 0.00 44.48 4.02
1529 1861 1.065854 CCCTGATCAACCTCAGACCAC 60.066 57.143 0.00 0.00 44.48 4.16
1530 1862 1.625315 CCTGATCAACCTCAGACCACA 59.375 52.381 0.00 0.00 44.48 4.17
1531 1863 2.613977 CCTGATCAACCTCAGACCACAC 60.614 54.545 0.00 0.00 44.48 3.82
1532 1864 2.301296 CTGATCAACCTCAGACCACACT 59.699 50.000 0.00 0.00 44.48 3.55
1533 1865 2.705658 TGATCAACCTCAGACCACACTT 59.294 45.455 0.00 0.00 0.00 3.16
1534 1866 2.620251 TCAACCTCAGACCACACTTG 57.380 50.000 0.00 0.00 0.00 3.16
1535 1867 0.947244 CAACCTCAGACCACACTTGC 59.053 55.000 0.00 0.00 0.00 4.01
1536 1868 0.546122 AACCTCAGACCACACTTGCA 59.454 50.000 0.00 0.00 0.00 4.08
1537 1869 0.179045 ACCTCAGACCACACTTGCAC 60.179 55.000 0.00 0.00 0.00 4.57
1538 1870 1.224069 CCTCAGACCACACTTGCACG 61.224 60.000 0.00 0.00 0.00 5.34
1539 1871 1.224069 CTCAGACCACACTTGCACGG 61.224 60.000 0.00 0.00 0.00 4.94
1540 1872 2.111043 AGACCACACTTGCACGGG 59.889 61.111 0.00 0.00 0.00 5.28
1541 1873 2.110213 GACCACACTTGCACGGGA 59.890 61.111 0.00 0.00 0.00 5.14
1542 1874 1.961277 GACCACACTTGCACGGGAG 60.961 63.158 0.00 0.00 0.00 4.30
1543 1875 3.357079 CCACACTTGCACGGGAGC 61.357 66.667 0.00 0.00 0.00 4.70
1544 1876 2.591429 CACACTTGCACGGGAGCA 60.591 61.111 0.00 0.00 43.99 4.26
1550 1882 2.747460 TGCACGGGAGCAAGCATC 60.747 61.111 0.00 0.00 42.46 3.91
1551 1883 3.869272 GCACGGGAGCAAGCATCG 61.869 66.667 0.00 0.00 0.00 3.84
1552 1884 3.197790 CACGGGAGCAAGCATCGG 61.198 66.667 0.00 0.00 0.00 4.18
1553 1885 3.390521 ACGGGAGCAAGCATCGGA 61.391 61.111 0.00 0.00 0.00 4.55
1554 1886 2.109799 CGGGAGCAAGCATCGGAT 59.890 61.111 0.00 0.00 0.00 4.18
1555 1887 1.367471 CGGGAGCAAGCATCGGATA 59.633 57.895 0.00 0.00 0.00 2.59
1556 1888 0.668706 CGGGAGCAAGCATCGGATAG 60.669 60.000 0.00 0.00 0.00 2.08
1557 1889 0.681733 GGGAGCAAGCATCGGATAGA 59.318 55.000 0.00 0.00 0.00 1.98
1561 1893 3.249559 GGAGCAAGCATCGGATAGAAAAG 59.750 47.826 0.00 0.00 0.00 2.27
1572 1904 3.933332 CGGATAGAAAAGTGTTCCACCTC 59.067 47.826 0.00 0.00 34.49 3.85
1588 1920 2.095567 CACCTCCATGAAACAAAGCTCG 60.096 50.000 0.00 0.00 0.00 5.03
1589 1921 1.135575 CCTCCATGAAACAAAGCTCGC 60.136 52.381 0.00 0.00 0.00 5.03
1590 1922 0.881118 TCCATGAAACAAAGCTCGCC 59.119 50.000 0.00 0.00 0.00 5.54
1591 1923 0.597568 CCATGAAACAAAGCTCGCCA 59.402 50.000 0.00 0.00 0.00 5.69
1592 1924 1.666888 CCATGAAACAAAGCTCGCCAC 60.667 52.381 0.00 0.00 0.00 5.01
1593 1925 0.238289 ATGAAACAAAGCTCGCCACG 59.762 50.000 0.00 0.00 0.00 4.94
1594 1926 1.092921 TGAAACAAAGCTCGCCACGT 61.093 50.000 0.00 0.00 0.00 4.49
1595 1927 0.657368 GAAACAAAGCTCGCCACGTG 60.657 55.000 9.08 9.08 0.00 4.49
1596 1928 2.662091 AAACAAAGCTCGCCACGTGC 62.662 55.000 10.91 4.89 44.90 5.34
1597 1929 3.648982 CAAAGCTCGCCACGTGCA 61.649 61.111 10.91 0.00 46.56 4.57
1598 1930 2.899838 AAAGCTCGCCACGTGCAA 60.900 55.556 10.91 0.00 46.56 4.08
1599 1931 2.477176 AAAGCTCGCCACGTGCAAA 61.477 52.632 10.91 0.00 46.56 3.68
1600 1932 2.392613 AAAGCTCGCCACGTGCAAAG 62.393 55.000 10.91 7.46 46.56 2.77
1601 1933 3.345808 GCTCGCCACGTGCAAAGA 61.346 61.111 10.91 5.24 44.15 2.52
1602 1934 2.892334 GCTCGCCACGTGCAAAGAA 61.892 57.895 10.91 0.00 44.15 2.52
1603 1935 1.205064 CTCGCCACGTGCAAAGAAG 59.795 57.895 10.91 0.00 41.33 2.85
1604 1936 1.498865 CTCGCCACGTGCAAAGAAGT 61.499 55.000 10.91 0.00 41.33 3.01
1605 1937 1.082756 CGCCACGTGCAAAGAAGTC 60.083 57.895 10.91 0.00 41.33 3.01
1606 1938 1.498865 CGCCACGTGCAAAGAAGTCT 61.499 55.000 10.91 0.00 41.33 3.24
1607 1939 0.663153 GCCACGTGCAAAGAAGTCTT 59.337 50.000 10.91 0.00 40.77 3.01
1608 1940 1.065551 GCCACGTGCAAAGAAGTCTTT 59.934 47.619 10.91 0.31 46.23 2.52
1609 1941 2.479560 GCCACGTGCAAAGAAGTCTTTT 60.480 45.455 10.91 0.00 43.07 2.27
1610 1942 3.108144 CCACGTGCAAAGAAGTCTTTTG 58.892 45.455 10.91 0.42 43.07 2.44
1611 1943 3.108144 CACGTGCAAAGAAGTCTTTTGG 58.892 45.455 0.82 0.00 43.07 3.28
1612 1944 3.013921 ACGTGCAAAGAAGTCTTTTGGA 58.986 40.909 3.51 0.00 43.07 3.53
1613 1945 3.065371 ACGTGCAAAGAAGTCTTTTGGAG 59.935 43.478 3.51 0.41 43.07 3.86
1614 1946 3.312421 CGTGCAAAGAAGTCTTTTGGAGA 59.688 43.478 3.51 0.00 43.07 3.71
1615 1947 4.023707 CGTGCAAAGAAGTCTTTTGGAGAT 60.024 41.667 3.51 0.00 43.07 2.75
1616 1948 5.456265 GTGCAAAGAAGTCTTTTGGAGATC 58.544 41.667 3.51 0.00 43.07 2.75
1617 1949 4.520492 TGCAAAGAAGTCTTTTGGAGATCC 59.480 41.667 3.51 0.00 43.07 3.36
1618 1950 4.520492 GCAAAGAAGTCTTTTGGAGATCCA 59.480 41.667 3.51 0.00 43.07 3.41
1619 1951 5.184671 GCAAAGAAGTCTTTTGGAGATCCAT 59.815 40.000 1.61 0.00 43.07 3.41
1620 1952 6.294955 GCAAAGAAGTCTTTTGGAGATCCATT 60.295 38.462 1.61 0.00 43.07 3.16
1621 1953 7.664758 CAAAGAAGTCTTTTGGAGATCCATTT 58.335 34.615 1.61 0.00 43.07 2.32
1622 1954 7.459795 AAGAAGTCTTTTGGAGATCCATTTC 57.540 36.000 1.61 1.66 46.97 2.17
1623 1955 5.948758 AGAAGTCTTTTGGAGATCCATTTCC 59.051 40.000 1.61 0.00 46.97 3.13
1624 1956 5.527026 AGTCTTTTGGAGATCCATTTCCT 57.473 39.130 1.61 0.00 46.97 3.36
1625 1957 5.504853 AGTCTTTTGGAGATCCATTTCCTC 58.495 41.667 1.61 0.00 46.97 3.71
1635 1967 2.726821 TCCATTTCCTCTCCAACATGC 58.273 47.619 0.00 0.00 0.00 4.06
1639 1971 4.240096 CATTTCCTCTCCAACATGCAAAC 58.760 43.478 0.00 0.00 0.00 2.93
1644 1976 2.227388 CTCTCCAACATGCAAACACTCC 59.773 50.000 0.00 0.00 0.00 3.85
1648 1980 3.568007 TCCAACATGCAAACACTCCTAAC 59.432 43.478 0.00 0.00 0.00 2.34
1650 1982 1.535462 ACATGCAAACACTCCTAACGC 59.465 47.619 0.00 0.00 0.00 4.84
1677 2009 0.678048 AGAGGATTCACGCCAAAGCC 60.678 55.000 0.00 0.00 34.57 4.35
1683 2015 2.652382 TTCACGCCAAAGCCTCGTCA 62.652 55.000 0.00 0.00 33.84 4.35
1707 2039 7.235606 TCAAGAAGATCTTCAAGAAACCTCCTA 59.764 37.037 31.79 6.74 41.84 2.94
1709 2041 5.331876 AGATCTTCAAGAAACCTCCTACG 57.668 43.478 0.00 0.00 0.00 3.51
1725 2057 5.223449 TCCTACGATCTTCAAAGGTTTGT 57.777 39.130 2.49 0.00 39.18 2.83
1743 2075 0.818445 GTCATGCAGCTCATCCTGGG 60.818 60.000 0.00 0.00 31.79 4.45
1744 2076 1.528542 CATGCAGCTCATCCTGGGG 60.529 63.158 0.00 0.00 31.79 4.96
1745 2077 1.695239 ATGCAGCTCATCCTGGGGA 60.695 57.895 0.00 0.00 35.55 4.81
1746 2078 1.284111 ATGCAGCTCATCCTGGGGAA 61.284 55.000 0.00 0.00 34.34 3.97
1747 2079 1.304282 GCAGCTCATCCTGGGGAAA 59.696 57.895 0.00 0.00 34.34 3.13
1748 2080 0.106318 GCAGCTCATCCTGGGGAAAT 60.106 55.000 0.00 0.00 34.34 2.17
1749 2081 1.688772 CAGCTCATCCTGGGGAAATG 58.311 55.000 0.00 0.00 34.34 2.32
1750 2082 0.106318 AGCTCATCCTGGGGAAATGC 60.106 55.000 0.00 0.00 34.34 3.56
1751 2083 1.450531 GCTCATCCTGGGGAAATGCG 61.451 60.000 0.00 0.00 34.34 4.73
1752 2084 1.450531 CTCATCCTGGGGAAATGCGC 61.451 60.000 0.00 0.00 34.34 6.09
1758 2090 3.460868 GGGGAAATGCGCCCTTGG 61.461 66.667 4.18 0.00 45.30 3.61
1759 2091 2.362375 GGGAAATGCGCCCTTGGA 60.362 61.111 4.18 0.00 42.56 3.53
1760 2092 1.981853 GGGAAATGCGCCCTTGGAA 60.982 57.895 4.18 0.00 42.56 3.53
1761 2093 1.329913 GGGAAATGCGCCCTTGGAAT 61.330 55.000 4.18 0.00 42.56 3.01
1762 2094 0.103026 GGAAATGCGCCCTTGGAATC 59.897 55.000 4.18 0.00 0.00 2.52
1763 2095 0.103026 GAAATGCGCCCTTGGAATCC 59.897 55.000 4.18 0.00 0.00 3.01
1764 2096 0.614415 AAATGCGCCCTTGGAATCCA 60.614 50.000 4.18 0.00 0.00 3.41
1765 2097 0.397535 AATGCGCCCTTGGAATCCAT 60.398 50.000 1.39 0.00 31.53 3.41
1766 2098 1.111116 ATGCGCCCTTGGAATCCATG 61.111 55.000 1.39 5.38 31.53 3.66
1767 2099 2.492773 GCGCCCTTGGAATCCATGG 61.493 63.158 23.19 23.19 45.17 3.66
1768 2100 2.492773 CGCCCTTGGAATCCATGGC 61.493 63.158 25.09 25.09 44.51 4.40
1769 2101 2.492773 GCCCTTGGAATCCATGGCG 61.493 63.158 24.35 18.75 44.51 5.69
1770 2102 1.829533 CCCTTGGAATCCATGGCGG 60.830 63.158 24.35 12.87 44.51 6.13
1780 2112 1.533625 TCCATGGCGGAAAGTTCTTG 58.466 50.000 6.96 0.00 42.52 3.02
1781 2113 0.109132 CCATGGCGGAAAGTTCTTGC 60.109 55.000 0.00 0.00 36.56 4.01
1782 2114 0.883833 CATGGCGGAAAGTTCTTGCT 59.116 50.000 8.13 0.00 0.00 3.91
1783 2115 1.270550 CATGGCGGAAAGTTCTTGCTT 59.729 47.619 8.13 0.00 0.00 3.91
1784 2116 1.398692 TGGCGGAAAGTTCTTGCTTT 58.601 45.000 8.13 0.00 40.94 3.51
1785 2117 1.754226 TGGCGGAAAGTTCTTGCTTTT 59.246 42.857 8.13 0.00 38.64 2.27
1786 2118 2.223711 TGGCGGAAAGTTCTTGCTTTTC 60.224 45.455 8.13 0.00 38.64 2.29
1787 2119 2.034685 GGCGGAAAGTTCTTGCTTTTCT 59.965 45.455 8.13 0.00 38.64 2.52
1788 2120 3.490933 GGCGGAAAGTTCTTGCTTTTCTT 60.491 43.478 8.13 0.00 38.64 2.52
1789 2121 3.487207 GCGGAAAGTTCTTGCTTTTCTTG 59.513 43.478 0.00 0.00 38.64 3.02
1790 2122 4.044426 CGGAAAGTTCTTGCTTTTCTTGG 58.956 43.478 0.00 0.00 38.64 3.61
1802 2134 5.911752 TGCTTTTCTTGGTAATGAAGCAAA 58.088 33.333 6.15 0.00 44.58 3.68
1843 2175 5.604231 TGAGAAGATCCATACCATACTTGCT 59.396 40.000 0.00 0.00 0.00 3.91
1844 2176 6.782494 TGAGAAGATCCATACCATACTTGCTA 59.218 38.462 0.00 0.00 0.00 3.49
1867 2200 3.415212 AGCAGCAATGCTAAGTCAAAGA 58.585 40.909 7.70 0.00 44.28 2.52
1871 2204 5.093457 CAGCAATGCTAAGTCAAAGATGTG 58.907 41.667 7.70 0.00 36.40 3.21
1879 2227 5.065731 GCTAAGTCAAAGATGTGAAGGATGG 59.934 44.000 0.00 0.00 0.00 3.51
1898 2246 1.071471 CCGCCTTGTCAGGTTCAGT 59.929 57.895 0.00 0.00 43.18 3.41
1900 2248 0.034059 CGCCTTGTCAGGTTCAGTCT 59.966 55.000 0.00 0.00 43.18 3.24
1907 2255 5.394005 CCTTGTCAGGTTCAGTCTATCTCTG 60.394 48.000 0.00 0.00 35.06 3.35
1950 2298 7.424803 CACACACTAATTTGAACAGAAATGGA 58.575 34.615 0.00 0.00 0.00 3.41
1959 2307 5.565592 TGAACAGAAATGGATGGATTTCG 57.434 39.130 0.00 0.00 44.03 3.46
1966 2314 2.174685 TGGATGGATTTCGGAGGAGA 57.825 50.000 0.00 0.00 0.00 3.71
1993 2345 2.112279 AGGGTTTGACCACTGGTAGA 57.888 50.000 0.00 0.00 41.02 2.59
1994 2346 2.632537 AGGGTTTGACCACTGGTAGAT 58.367 47.619 0.00 0.00 41.02 1.98
1995 2347 2.305927 AGGGTTTGACCACTGGTAGATG 59.694 50.000 0.00 0.00 41.02 2.90
2014 2366 2.108514 CGCATATATGGCCAGCCGG 61.109 63.158 13.05 0.00 39.42 6.13
2020 2372 1.920734 ATATGGCCAGCCGGAACACA 61.921 55.000 13.05 0.00 39.42 3.72
2021 2373 2.130821 TATGGCCAGCCGGAACACAA 62.131 55.000 13.05 0.00 39.42 3.33
2022 2374 3.365265 GGCCAGCCGGAACACAAG 61.365 66.667 5.05 0.00 0.00 3.16
2023 2375 3.365265 GCCAGCCGGAACACAAGG 61.365 66.667 5.05 0.00 0.00 3.61
2024 2376 2.672996 CCAGCCGGAACACAAGGG 60.673 66.667 5.05 0.00 0.00 3.95
2035 2387 3.499021 GGAACACAAGGGCTAGGGTTTAA 60.499 47.826 0.00 0.00 0.00 1.52
2048 2400 6.434965 GGCTAGGGTTTAACCTGATTACAAAA 59.565 38.462 14.27 0.00 42.02 2.44
2054 2406 7.449395 GGGTTTAACCTGATTACAAAAGTAGGT 59.551 37.037 14.27 0.00 38.64 3.08
2055 2407 8.294577 GGTTTAACCTGATTACAAAAGTAGGTG 58.705 37.037 6.92 0.00 35.91 4.00
2056 2408 9.059260 GTTTAACCTGATTACAAAAGTAGGTGA 57.941 33.333 0.00 0.00 35.91 4.02
2057 2409 8.842358 TTAACCTGATTACAAAAGTAGGTGAG 57.158 34.615 0.00 0.00 35.91 3.51
2058 2410 5.246307 ACCTGATTACAAAAGTAGGTGAGC 58.754 41.667 0.00 0.00 34.99 4.26
2059 2411 4.636206 CCTGATTACAAAAGTAGGTGAGCC 59.364 45.833 0.00 0.00 0.00 4.70
2061 2413 5.488341 TGATTACAAAAGTAGGTGAGCCTC 58.512 41.667 0.00 0.00 45.64 4.70
2062 2414 4.967084 TTACAAAAGTAGGTGAGCCTCA 57.033 40.909 0.00 0.00 45.64 3.86
2063 2415 3.409026 ACAAAAGTAGGTGAGCCTCAG 57.591 47.619 0.00 0.00 45.64 3.35
2064 2416 2.039084 ACAAAAGTAGGTGAGCCTCAGG 59.961 50.000 0.00 0.00 45.64 3.86
2074 2426 3.005539 GCCTCAGGCTCCCACTCA 61.006 66.667 9.09 0.00 46.69 3.41
2075 2427 2.985456 CCTCAGGCTCCCACTCAC 59.015 66.667 0.00 0.00 0.00 3.51
2076 2428 1.611851 CCTCAGGCTCCCACTCACT 60.612 63.158 0.00 0.00 0.00 3.41
2077 2429 1.595882 CTCAGGCTCCCACTCACTG 59.404 63.158 0.00 0.00 0.00 3.66
2078 2430 1.152247 TCAGGCTCCCACTCACTGT 60.152 57.895 0.00 0.00 0.00 3.55
2079 2431 1.188219 TCAGGCTCCCACTCACTGTC 61.188 60.000 0.00 0.00 0.00 3.51
2080 2432 1.157276 AGGCTCCCACTCACTGTCT 59.843 57.895 0.00 0.00 0.00 3.41
2081 2433 0.902516 AGGCTCCCACTCACTGTCTC 60.903 60.000 0.00 0.00 0.00 3.36
2082 2434 0.902516 GGCTCCCACTCACTGTCTCT 60.903 60.000 0.00 0.00 0.00 3.10
2083 2435 0.972883 GCTCCCACTCACTGTCTCTT 59.027 55.000 0.00 0.00 0.00 2.85
2084 2436 1.337635 GCTCCCACTCACTGTCTCTTG 60.338 57.143 0.00 0.00 0.00 3.02
2085 2437 1.967066 CTCCCACTCACTGTCTCTTGT 59.033 52.381 0.00 0.00 0.00 3.16
2086 2438 3.157881 CTCCCACTCACTGTCTCTTGTA 58.842 50.000 0.00 0.00 0.00 2.41
2087 2439 3.157881 TCCCACTCACTGTCTCTTGTAG 58.842 50.000 0.00 0.00 0.00 2.74
2088 2440 2.232452 CCCACTCACTGTCTCTTGTAGG 59.768 54.545 0.00 0.00 0.00 3.18
2089 2441 3.157881 CCACTCACTGTCTCTTGTAGGA 58.842 50.000 0.00 0.00 0.00 2.94
2090 2442 3.766591 CCACTCACTGTCTCTTGTAGGAT 59.233 47.826 0.00 0.00 0.00 3.24
2091 2443 4.221703 CCACTCACTGTCTCTTGTAGGATT 59.778 45.833 0.00 0.00 0.00 3.01
2092 2444 5.167121 CACTCACTGTCTCTTGTAGGATTG 58.833 45.833 0.00 0.00 0.00 2.67
2093 2445 4.180057 CTCACTGTCTCTTGTAGGATTGC 58.820 47.826 0.00 0.00 0.00 3.56
2094 2446 3.578282 TCACTGTCTCTTGTAGGATTGCA 59.422 43.478 0.00 0.00 0.00 4.08
2095 2447 3.931468 CACTGTCTCTTGTAGGATTGCAG 59.069 47.826 0.00 0.00 0.00 4.41
2096 2448 3.834813 ACTGTCTCTTGTAGGATTGCAGA 59.165 43.478 0.00 0.00 0.00 4.26
2097 2449 4.469227 ACTGTCTCTTGTAGGATTGCAGAT 59.531 41.667 0.00 0.00 0.00 2.90
2098 2450 4.763073 TGTCTCTTGTAGGATTGCAGATG 58.237 43.478 0.00 0.00 0.00 2.90
2099 2451 4.467438 TGTCTCTTGTAGGATTGCAGATGA 59.533 41.667 0.00 0.00 0.00 2.92
2100 2452 5.049167 GTCTCTTGTAGGATTGCAGATGAG 58.951 45.833 0.00 0.00 0.00 2.90
2101 2453 4.958581 TCTCTTGTAGGATTGCAGATGAGA 59.041 41.667 0.00 0.00 0.00 3.27
2102 2454 5.423290 TCTCTTGTAGGATTGCAGATGAGAA 59.577 40.000 0.00 0.00 0.00 2.87
2103 2455 6.053632 TCTTGTAGGATTGCAGATGAGAAA 57.946 37.500 0.00 0.00 0.00 2.52
2104 2456 6.475504 TCTTGTAGGATTGCAGATGAGAAAA 58.524 36.000 0.00 0.00 0.00 2.29
2105 2457 6.596888 TCTTGTAGGATTGCAGATGAGAAAAG 59.403 38.462 0.00 0.00 0.00 2.27
2106 2458 5.188434 TGTAGGATTGCAGATGAGAAAAGG 58.812 41.667 0.00 0.00 0.00 3.11
2107 2459 4.313020 AGGATTGCAGATGAGAAAAGGT 57.687 40.909 0.00 0.00 0.00 3.50
2108 2460 4.015084 AGGATTGCAGATGAGAAAAGGTG 58.985 43.478 0.00 0.00 0.00 4.00
2109 2461 3.760684 GGATTGCAGATGAGAAAAGGTGT 59.239 43.478 0.00 0.00 0.00 4.16
2110 2462 4.219288 GGATTGCAGATGAGAAAAGGTGTT 59.781 41.667 0.00 0.00 0.00 3.32
2111 2463 5.415701 GGATTGCAGATGAGAAAAGGTGTTA 59.584 40.000 0.00 0.00 0.00 2.41
2112 2464 5.947228 TTGCAGATGAGAAAAGGTGTTAG 57.053 39.130 0.00 0.00 0.00 2.34
2113 2465 4.973168 TGCAGATGAGAAAAGGTGTTAGT 58.027 39.130 0.00 0.00 0.00 2.24
2114 2466 6.109156 TGCAGATGAGAAAAGGTGTTAGTA 57.891 37.500 0.00 0.00 0.00 1.82
2115 2467 6.530120 TGCAGATGAGAAAAGGTGTTAGTAA 58.470 36.000 0.00 0.00 0.00 2.24
2116 2468 6.995686 TGCAGATGAGAAAAGGTGTTAGTAAA 59.004 34.615 0.00 0.00 0.00 2.01
2117 2469 7.041372 TGCAGATGAGAAAAGGTGTTAGTAAAC 60.041 37.037 0.00 0.00 36.07 2.01
2118 2470 7.041372 GCAGATGAGAAAAGGTGTTAGTAAACA 60.041 37.037 0.00 0.00 43.32 2.83
2119 2471 8.499162 CAGATGAGAAAAGGTGTTAGTAAACAG 58.501 37.037 0.00 0.00 46.06 3.16
2120 2472 8.211629 AGATGAGAAAAGGTGTTAGTAAACAGT 58.788 33.333 0.00 0.00 46.06 3.55
2121 2473 9.485206 GATGAGAAAAGGTGTTAGTAAACAGTA 57.515 33.333 0.00 0.00 46.06 2.74
2122 2474 8.882415 TGAGAAAAGGTGTTAGTAAACAGTAG 57.118 34.615 0.00 0.00 46.06 2.57
2123 2475 8.698210 TGAGAAAAGGTGTTAGTAAACAGTAGA 58.302 33.333 0.00 0.00 46.06 2.59
2124 2476 9.538508 GAGAAAAGGTGTTAGTAAACAGTAGAA 57.461 33.333 0.00 0.00 46.06 2.10
2125 2477 9.543783 AGAAAAGGTGTTAGTAAACAGTAGAAG 57.456 33.333 0.00 0.00 46.06 2.85
2126 2478 9.538508 GAAAAGGTGTTAGTAAACAGTAGAAGA 57.461 33.333 0.00 0.00 46.06 2.87
2127 2479 9.895138 AAAAGGTGTTAGTAAACAGTAGAAGAA 57.105 29.630 0.00 0.00 46.06 2.52
2128 2480 8.883954 AAGGTGTTAGTAAACAGTAGAAGAAC 57.116 34.615 0.00 0.00 46.06 3.01
2129 2481 7.144000 AGGTGTTAGTAAACAGTAGAAGAACG 58.856 38.462 0.00 0.00 46.06 3.95
2130 2482 6.920210 GGTGTTAGTAAACAGTAGAAGAACGT 59.080 38.462 0.00 0.00 46.06 3.99
2131 2483 7.096312 GGTGTTAGTAAACAGTAGAAGAACGTG 60.096 40.741 0.00 0.00 46.06 4.49
2132 2484 6.418819 TGTTAGTAAACAGTAGAAGAACGTGC 59.581 38.462 0.00 0.00 40.69 5.34
2133 2485 5.197682 AGTAAACAGTAGAAGAACGTGCT 57.802 39.130 0.00 0.00 0.00 4.40
2134 2486 6.323203 AGTAAACAGTAGAAGAACGTGCTA 57.677 37.500 0.00 0.00 0.00 3.49
2135 2487 6.921914 AGTAAACAGTAGAAGAACGTGCTAT 58.078 36.000 0.00 0.00 0.00 2.97
2136 2488 7.376615 AGTAAACAGTAGAAGAACGTGCTATT 58.623 34.615 0.00 0.00 0.00 1.73
2137 2489 6.467723 AAACAGTAGAAGAACGTGCTATTG 57.532 37.500 0.00 3.04 0.00 1.90
2138 2490 5.135508 ACAGTAGAAGAACGTGCTATTGT 57.864 39.130 0.00 3.65 32.46 2.71
2139 2491 5.162075 ACAGTAGAAGAACGTGCTATTGTC 58.838 41.667 0.00 0.00 31.97 3.18
2140 2492 4.263209 CAGTAGAAGAACGTGCTATTGTCG 59.737 45.833 0.00 0.00 0.00 4.35
2141 2493 3.299340 AGAAGAACGTGCTATTGTCGT 57.701 42.857 0.00 0.00 39.49 4.34
2142 2494 4.430137 AGAAGAACGTGCTATTGTCGTA 57.570 40.909 0.00 0.00 36.80 3.43
2143 2495 4.801891 AGAAGAACGTGCTATTGTCGTAA 58.198 39.130 0.00 0.00 36.80 3.18
2144 2496 5.408356 AGAAGAACGTGCTATTGTCGTAAT 58.592 37.500 0.00 0.00 36.80 1.89
2145 2497 5.867716 AGAAGAACGTGCTATTGTCGTAATT 59.132 36.000 0.00 0.00 36.80 1.40
2146 2498 5.697848 AGAACGTGCTATTGTCGTAATTC 57.302 39.130 0.00 0.00 36.80 2.17
2147 2499 5.165676 AGAACGTGCTATTGTCGTAATTCA 58.834 37.500 0.00 0.00 36.80 2.57
2148 2500 5.636121 AGAACGTGCTATTGTCGTAATTCAA 59.364 36.000 0.00 0.00 36.80 2.69
2149 2501 5.849357 ACGTGCTATTGTCGTAATTCAAA 57.151 34.783 0.00 0.00 36.05 2.69
2150 2502 6.417191 ACGTGCTATTGTCGTAATTCAAAT 57.583 33.333 0.00 0.00 36.05 2.32
2151 2503 7.528481 ACGTGCTATTGTCGTAATTCAAATA 57.472 32.000 0.00 0.00 36.05 1.40
2152 2504 7.618442 ACGTGCTATTGTCGTAATTCAAATAG 58.382 34.615 0.00 0.00 36.05 1.73
2153 2505 6.570058 CGTGCTATTGTCGTAATTCAAATAGC 59.430 38.462 15.40 15.40 34.85 2.97
2154 2506 6.570058 GTGCTATTGTCGTAATTCAAATAGCG 59.430 38.462 16.54 0.00 35.75 4.26
2155 2507 6.256975 TGCTATTGTCGTAATTCAAATAGCGT 59.743 34.615 16.54 0.00 35.75 5.07
2156 2508 6.786103 GCTATTGTCGTAATTCAAATAGCGTC 59.214 38.462 9.25 0.00 0.00 5.19
2157 2509 6.656314 ATTGTCGTAATTCAAATAGCGTCA 57.344 33.333 0.00 0.00 0.00 4.35
2158 2510 5.444586 TGTCGTAATTCAAATAGCGTCAC 57.555 39.130 0.00 0.00 0.00 3.67
2159 2511 4.030865 TGTCGTAATTCAAATAGCGTCACG 59.969 41.667 0.00 0.00 0.00 4.35
2170 2522 3.842126 CGTCACGCCGATGCACAG 61.842 66.667 0.00 0.00 37.32 3.66
2171 2523 3.490759 GTCACGCCGATGCACAGG 61.491 66.667 4.99 4.99 37.32 4.00
2172 2524 3.690280 TCACGCCGATGCACAGGA 61.690 61.111 12.99 0.00 37.32 3.86
2173 2525 3.190849 CACGCCGATGCACAGGAG 61.191 66.667 12.99 11.78 37.32 3.69
2177 2529 3.790437 CCGATGCACAGGAGCCCT 61.790 66.667 3.30 0.00 0.00 5.19
2178 2530 2.270205 CGATGCACAGGAGCCCTT 59.730 61.111 0.00 0.00 0.00 3.95
2179 2531 2.110967 CGATGCACAGGAGCCCTTG 61.111 63.158 0.00 0.00 0.00 3.61
2180 2532 1.751927 GATGCACAGGAGCCCTTGG 60.752 63.158 0.00 0.00 0.00 3.61
2181 2533 2.202236 GATGCACAGGAGCCCTTGGA 62.202 60.000 0.00 0.00 0.00 3.53
2182 2534 1.578215 ATGCACAGGAGCCCTTGGAT 61.578 55.000 0.00 0.00 0.00 3.41
2183 2535 1.452833 GCACAGGAGCCCTTGGATC 60.453 63.158 0.00 0.00 37.39 3.36
2184 2536 1.153289 CACAGGAGCCCTTGGATCG 60.153 63.158 0.00 0.00 39.27 3.69
2185 2537 2.370445 ACAGGAGCCCTTGGATCGG 61.370 63.158 0.00 0.00 39.27 4.18
2186 2538 2.066393 CAGGAGCCCTTGGATCGGA 61.066 63.158 0.00 0.00 39.27 4.55
2187 2539 1.764054 AGGAGCCCTTGGATCGGAG 60.764 63.158 0.00 0.00 39.27 4.63
2188 2540 1.762460 GGAGCCCTTGGATCGGAGA 60.762 63.158 0.00 0.00 39.27 3.71
2189 2541 1.124477 GGAGCCCTTGGATCGGAGAT 61.124 60.000 0.00 0.00 45.12 2.75
2190 2542 0.320050 GAGCCCTTGGATCGGAGATC 59.680 60.000 1.63 1.63 45.12 2.75
2191 2543 0.399091 AGCCCTTGGATCGGAGATCA 60.399 55.000 11.53 0.00 45.12 2.92
2192 2544 0.469917 GCCCTTGGATCGGAGATCAA 59.530 55.000 11.53 0.00 45.12 2.57
2193 2545 1.811941 GCCCTTGGATCGGAGATCAAC 60.812 57.143 11.53 0.00 45.12 3.18
2194 2546 1.486310 CCCTTGGATCGGAGATCAACA 59.514 52.381 11.53 0.00 45.12 3.33
2195 2547 2.105477 CCCTTGGATCGGAGATCAACAT 59.895 50.000 11.53 0.00 45.12 2.71
2196 2548 3.136763 CCTTGGATCGGAGATCAACATG 58.863 50.000 11.53 0.00 45.12 3.21
2197 2549 2.916702 TGGATCGGAGATCAACATGG 57.083 50.000 11.53 0.00 45.12 3.66
2198 2550 1.417517 TGGATCGGAGATCAACATGGG 59.582 52.381 11.53 0.00 45.12 4.00
2199 2551 1.517242 GATCGGAGATCAACATGGGC 58.483 55.000 0.00 0.00 45.12 5.36
2200 2552 1.071385 GATCGGAGATCAACATGGGCT 59.929 52.381 0.00 0.00 45.12 5.19
2201 2553 0.178767 TCGGAGATCAACATGGGCTG 59.821 55.000 0.00 0.00 0.00 4.85
2202 2554 1.442526 CGGAGATCAACATGGGCTGC 61.443 60.000 0.00 0.00 0.00 5.25
2203 2555 1.442526 GGAGATCAACATGGGCTGCG 61.443 60.000 0.00 0.00 0.00 5.18
2204 2556 0.462581 GAGATCAACATGGGCTGCGA 60.463 55.000 0.00 0.00 0.00 5.10
2205 2557 0.745845 AGATCAACATGGGCTGCGAC 60.746 55.000 0.00 0.00 0.00 5.19
2206 2558 2.040213 GATCAACATGGGCTGCGACG 62.040 60.000 0.00 0.00 0.00 5.12
2207 2559 2.803155 ATCAACATGGGCTGCGACGT 62.803 55.000 0.00 0.00 0.00 4.34
2208 2560 2.742372 AACATGGGCTGCGACGTC 60.742 61.111 5.18 5.18 0.00 4.34
2209 2561 3.240134 AACATGGGCTGCGACGTCT 62.240 57.895 14.70 0.00 0.00 4.18
2210 2562 2.887568 CATGGGCTGCGACGTCTC 60.888 66.667 14.70 6.24 0.00 3.36
2211 2563 4.148825 ATGGGCTGCGACGTCTCC 62.149 66.667 14.70 8.99 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 88 2.103537 TGCATGTCATGGAGTCACTG 57.896 50.000 14.64 0.00 0.00 3.66
67 90 3.766151 CAATTGCATGTCATGGAGTCAC 58.234 45.455 14.64 0.00 0.00 3.67
91 114 8.980596 TGATGCTATGAAAATTGAAACCCTATT 58.019 29.630 0.00 0.00 0.00 1.73
121 146 2.675658 AACCATTGCAGTACCCTTGT 57.324 45.000 0.00 0.00 0.00 3.16
128 153 2.739913 GCGTTCACTAACCATTGCAGTA 59.260 45.455 0.00 0.00 31.46 2.74
129 154 1.535462 GCGTTCACTAACCATTGCAGT 59.465 47.619 0.00 0.00 31.46 4.40
130 155 1.535028 TGCGTTCACTAACCATTGCAG 59.465 47.619 0.00 0.00 31.46 4.41
136 164 8.500753 AATTTATAATCTGCGTTCACTAACCA 57.499 30.769 0.00 0.00 31.46 3.67
143 171 6.509517 GCTCACGAATTTATAATCTGCGTTCA 60.510 38.462 0.00 0.00 0.00 3.18
144 172 5.841296 GCTCACGAATTTATAATCTGCGTTC 59.159 40.000 0.00 0.00 0.00 3.95
149 177 5.991606 TGGGAGCTCACGAATTTATAATCTG 59.008 40.000 17.19 0.00 0.00 2.90
150 178 6.174720 TGGGAGCTCACGAATTTATAATCT 57.825 37.500 17.19 0.00 0.00 2.40
162 190 4.155826 TGATTACATTTTTGGGAGCTCACG 59.844 41.667 17.19 0.00 0.00 4.35
164 192 5.716228 ACATGATTACATTTTTGGGAGCTCA 59.284 36.000 17.19 0.00 34.15 4.26
196 224 3.247648 CACAATTCCTCGTTCAGTCGTTT 59.752 43.478 0.00 0.00 0.00 3.60
260 296 1.352017 TGGCATTCTGACATGGTGACT 59.648 47.619 0.00 0.00 24.43 3.41
318 556 3.138304 GACCACTGTGCTGAAATGTGTA 58.862 45.455 1.29 0.00 0.00 2.90
395 641 8.049117 AGTTCTTCATGTTTCTCCATATGCTAA 58.951 33.333 0.00 0.00 0.00 3.09
433 679 7.956420 TTTAAGACTAAATGAAGCACTCGAA 57.044 32.000 0.00 0.00 0.00 3.71
693 979 6.374333 TGATGTGTAGCCTTTCCAGATAAAAC 59.626 38.462 0.00 0.00 0.00 2.43
770 1062 4.274459 AGCAACTCAAATGTGACTTCAGTC 59.726 41.667 0.00 0.00 44.97 3.51
771 1063 4.036027 CAGCAACTCAAATGTGACTTCAGT 59.964 41.667 0.00 0.00 0.00 3.41
772 1064 4.534168 CAGCAACTCAAATGTGACTTCAG 58.466 43.478 0.00 0.00 0.00 3.02
773 1065 3.243168 GCAGCAACTCAAATGTGACTTCA 60.243 43.478 0.00 0.00 0.00 3.02
825 1117 1.309876 TCTTCTGGCTCCCCTCTAGA 58.690 55.000 0.00 0.00 0.00 2.43
1182 1510 3.909651 GGGGTGGAGGGGTTTGCA 61.910 66.667 0.00 0.00 0.00 4.08
1276 1605 2.292828 AACCATGGTTCTGGGTTCTG 57.707 50.000 24.86 0.00 40.82 3.02
1294 1623 8.106462 TGACCTATTATCATCACAGAAACCAAA 58.894 33.333 0.00 0.00 0.00 3.28
1315 1644 9.553064 CATAAAAAGCTCTATCTAACATGACCT 57.447 33.333 0.00 0.00 0.00 3.85
1367 1696 4.378046 CGGTCACCATAAACACTAAAGCAC 60.378 45.833 0.00 0.00 0.00 4.40
1374 1703 0.672401 CCGCGGTCACCATAAACACT 60.672 55.000 19.50 0.00 0.00 3.55
1466 1798 7.505258 TGGTGATCAAGAACGGAATGAATATA 58.495 34.615 0.00 0.00 0.00 0.86
1467 1799 6.356556 TGGTGATCAAGAACGGAATGAATAT 58.643 36.000 0.00 0.00 0.00 1.28
1468 1800 5.739959 TGGTGATCAAGAACGGAATGAATA 58.260 37.500 0.00 0.00 0.00 1.75
1488 1820 2.952310 GAGTTCCTGCAAAGTTCTTGGT 59.048 45.455 0.00 0.00 0.00 3.67
1506 1838 2.183679 GTCTGAGGTTGATCAGGGAGT 58.816 52.381 0.00 0.00 45.60 3.85
1508 1840 1.203300 TGGTCTGAGGTTGATCAGGGA 60.203 52.381 0.00 0.00 45.60 4.20
1522 1854 2.253758 CCCGTGCAAGTGTGGTCTG 61.254 63.158 0.00 0.00 0.00 3.51
1523 1855 2.111043 CCCGTGCAAGTGTGGTCT 59.889 61.111 0.00 0.00 0.00 3.85
1524 1856 1.961277 CTCCCGTGCAAGTGTGGTC 60.961 63.158 0.00 0.00 0.00 4.02
1525 1857 2.111043 CTCCCGTGCAAGTGTGGT 59.889 61.111 0.00 0.00 0.00 4.16
1526 1858 3.357079 GCTCCCGTGCAAGTGTGG 61.357 66.667 0.00 0.00 0.00 4.17
1527 1859 2.186160 TTGCTCCCGTGCAAGTGTG 61.186 57.895 0.00 0.00 46.43 3.82
1528 1860 2.191908 TTGCTCCCGTGCAAGTGT 59.808 55.556 0.00 0.00 46.43 3.55
1533 1865 2.747460 GATGCTTGCTCCCGTGCA 60.747 61.111 0.00 0.00 41.65 4.57
1534 1866 3.869272 CGATGCTTGCTCCCGTGC 61.869 66.667 0.00 0.00 0.00 5.34
1535 1867 2.930385 ATCCGATGCTTGCTCCCGTG 62.930 60.000 0.00 0.00 0.00 4.94
1536 1868 1.399744 TATCCGATGCTTGCTCCCGT 61.400 55.000 0.00 0.00 0.00 5.28
1537 1869 0.668706 CTATCCGATGCTTGCTCCCG 60.669 60.000 0.00 0.00 0.00 5.14
1538 1870 0.681733 TCTATCCGATGCTTGCTCCC 59.318 55.000 0.00 0.00 0.00 4.30
1539 1871 2.533266 TTCTATCCGATGCTTGCTCC 57.467 50.000 0.00 0.00 0.00 4.70
1540 1872 3.873952 ACTTTTCTATCCGATGCTTGCTC 59.126 43.478 0.00 0.00 0.00 4.26
1541 1873 3.624861 CACTTTTCTATCCGATGCTTGCT 59.375 43.478 0.00 0.00 0.00 3.91
1542 1874 3.375299 ACACTTTTCTATCCGATGCTTGC 59.625 43.478 0.00 0.00 0.00 4.01
1543 1875 5.447818 GGAACACTTTTCTATCCGATGCTTG 60.448 44.000 0.00 0.00 0.00 4.01
1544 1876 4.636206 GGAACACTTTTCTATCCGATGCTT 59.364 41.667 0.00 0.00 0.00 3.91
1545 1877 4.192317 GGAACACTTTTCTATCCGATGCT 58.808 43.478 0.00 0.00 0.00 3.79
1546 1878 3.938963 TGGAACACTTTTCTATCCGATGC 59.061 43.478 0.00 0.00 32.72 3.91
1572 1904 0.597568 TGGCGAGCTTTGTTTCATGG 59.402 50.000 0.00 0.00 0.00 3.66
1588 1920 0.663153 AAGACTTCTTTGCACGTGGC 59.337 50.000 18.88 10.30 45.13 5.01
1589 1921 3.108144 CAAAAGACTTCTTTGCACGTGG 58.892 45.455 18.88 0.00 44.69 4.94
1590 1922 3.108144 CCAAAAGACTTCTTTGCACGTG 58.892 45.455 12.28 12.28 44.69 4.49
1591 1923 3.013921 TCCAAAAGACTTCTTTGCACGT 58.986 40.909 4.99 0.00 44.69 4.49
1592 1924 3.312421 TCTCCAAAAGACTTCTTTGCACG 59.688 43.478 4.99 0.00 44.69 5.34
1593 1925 4.900635 TCTCCAAAAGACTTCTTTGCAC 57.099 40.909 4.99 0.00 44.69 4.57
1594 1926 4.520492 GGATCTCCAAAAGACTTCTTTGCA 59.480 41.667 4.99 0.00 44.69 4.08
1595 1927 4.520492 TGGATCTCCAAAAGACTTCTTTGC 59.480 41.667 4.99 0.00 44.69 3.68
1611 1943 4.494091 TGTTGGAGAGGAAATGGATCTC 57.506 45.455 0.00 0.00 39.00 2.75
1612 1944 4.789807 CATGTTGGAGAGGAAATGGATCT 58.210 43.478 0.00 0.00 0.00 2.75
1613 1945 3.317430 GCATGTTGGAGAGGAAATGGATC 59.683 47.826 0.00 0.00 0.00 3.36
1614 1946 3.294214 GCATGTTGGAGAGGAAATGGAT 58.706 45.455 0.00 0.00 0.00 3.41
1615 1947 2.041485 TGCATGTTGGAGAGGAAATGGA 59.959 45.455 0.00 0.00 0.00 3.41
1616 1948 2.449464 TGCATGTTGGAGAGGAAATGG 58.551 47.619 0.00 0.00 0.00 3.16
1617 1949 4.240096 GTTTGCATGTTGGAGAGGAAATG 58.760 43.478 0.00 0.00 0.00 2.32
1618 1950 3.896888 TGTTTGCATGTTGGAGAGGAAAT 59.103 39.130 0.00 0.00 0.00 2.17
1619 1951 3.068024 GTGTTTGCATGTTGGAGAGGAAA 59.932 43.478 0.00 0.00 0.00 3.13
1620 1952 2.622942 GTGTTTGCATGTTGGAGAGGAA 59.377 45.455 0.00 0.00 0.00 3.36
1621 1953 2.158623 AGTGTTTGCATGTTGGAGAGGA 60.159 45.455 0.00 0.00 0.00 3.71
1622 1954 2.227388 GAGTGTTTGCATGTTGGAGAGG 59.773 50.000 0.00 0.00 0.00 3.69
1623 1955 2.227388 GGAGTGTTTGCATGTTGGAGAG 59.773 50.000 0.00 0.00 0.00 3.20
1624 1956 2.158623 AGGAGTGTTTGCATGTTGGAGA 60.159 45.455 0.00 0.00 0.00 3.71
1625 1957 2.233271 AGGAGTGTTTGCATGTTGGAG 58.767 47.619 0.00 0.00 0.00 3.86
1635 1967 2.221055 GTCAGTGCGTTAGGAGTGTTTG 59.779 50.000 0.00 0.00 39.72 2.93
1639 1971 0.317160 TGGTCAGTGCGTTAGGAGTG 59.683 55.000 0.00 0.00 40.05 3.51
1644 1976 0.888619 TCCTCTGGTCAGTGCGTTAG 59.111 55.000 0.00 0.00 0.00 2.34
1648 1980 0.247460 TGAATCCTCTGGTCAGTGCG 59.753 55.000 0.00 0.00 0.00 5.34
1650 1982 2.001812 CGTGAATCCTCTGGTCAGTG 57.998 55.000 0.00 0.00 0.00 3.66
1677 2009 6.128688 GGTTTCTTGAAGATCTTCTTGACGAG 60.129 42.308 30.45 16.63 36.73 4.18
1683 2015 6.446909 AGGAGGTTTCTTGAAGATCTTCTT 57.553 37.500 30.45 1.55 39.87 2.52
1707 2039 4.320494 GCATGACAAACCTTTGAAGATCGT 60.320 41.667 0.00 0.00 40.55 3.73
1709 2041 5.125100 TGCATGACAAACCTTTGAAGATC 57.875 39.130 0.00 0.00 40.55 2.75
1725 2057 1.530283 CCCAGGATGAGCTGCATGA 59.470 57.895 1.02 0.00 39.69 3.07
1743 2075 0.103026 GATTCCAAGGGCGCATTTCC 59.897 55.000 10.83 0.00 0.00 3.13
1744 2076 0.103026 GGATTCCAAGGGCGCATTTC 59.897 55.000 10.83 0.00 0.00 2.17
1745 2077 0.614415 TGGATTCCAAGGGCGCATTT 60.614 50.000 10.83 0.00 0.00 2.32
1746 2078 0.397535 ATGGATTCCAAGGGCGCATT 60.398 50.000 10.83 0.00 36.95 3.56
1747 2079 1.111116 CATGGATTCCAAGGGCGCAT 61.111 55.000 10.83 0.00 36.95 4.73
1748 2080 1.753848 CATGGATTCCAAGGGCGCA 60.754 57.895 10.83 0.00 36.95 6.09
1749 2081 2.492773 CCATGGATTCCAAGGGCGC 61.493 63.158 17.60 0.00 38.58 6.53
1750 2082 2.492773 GCCATGGATTCCAAGGGCG 61.493 63.158 26.56 7.03 44.09 6.13
1751 2083 3.542304 GCCATGGATTCCAAGGGC 58.458 61.111 26.56 26.56 45.72 5.19
1752 2084 1.829533 CCGCCATGGATTCCAAGGG 60.830 63.158 24.57 21.16 42.10 3.95
1753 2085 1.227102 TCCGCCATGGATTCCAAGG 59.773 57.895 20.42 20.42 43.74 3.61
1754 2086 4.984194 TCCGCCATGGATTCCAAG 57.016 55.556 18.40 5.08 43.74 3.61
1762 2094 0.109132 GCAAGAACTTTCCGCCATGG 60.109 55.000 7.63 7.63 40.09 3.66
1763 2095 0.883833 AGCAAGAACTTTCCGCCATG 59.116 50.000 0.00 0.00 0.00 3.66
1764 2096 1.620822 AAGCAAGAACTTTCCGCCAT 58.379 45.000 0.00 0.00 0.00 4.40
1765 2097 1.398692 AAAGCAAGAACTTTCCGCCA 58.601 45.000 0.00 0.00 34.84 5.69
1766 2098 2.034685 AGAAAAGCAAGAACTTTCCGCC 59.965 45.455 0.00 0.00 38.92 6.13
1767 2099 3.355626 AGAAAAGCAAGAACTTTCCGC 57.644 42.857 0.00 0.00 38.92 5.54
1768 2100 4.044426 CCAAGAAAAGCAAGAACTTTCCG 58.956 43.478 0.00 0.00 38.92 4.30
1769 2101 5.011090 ACCAAGAAAAGCAAGAACTTTCC 57.989 39.130 0.00 0.00 38.92 3.13
1770 2102 7.920682 TCATTACCAAGAAAAGCAAGAACTTTC 59.079 33.333 0.00 0.00 38.92 2.62
1771 2103 7.781056 TCATTACCAAGAAAAGCAAGAACTTT 58.219 30.769 0.00 0.00 41.60 2.66
1772 2104 7.346751 TCATTACCAAGAAAAGCAAGAACTT 57.653 32.000 0.00 0.00 0.00 2.66
1773 2105 6.959639 TCATTACCAAGAAAAGCAAGAACT 57.040 33.333 0.00 0.00 0.00 3.01
1774 2106 6.144563 GCTTCATTACCAAGAAAAGCAAGAAC 59.855 38.462 0.00 0.00 39.07 3.01
1775 2107 6.183360 TGCTTCATTACCAAGAAAAGCAAGAA 60.183 34.615 5.21 0.00 44.22 2.52
1776 2108 5.301551 TGCTTCATTACCAAGAAAAGCAAGA 59.698 36.000 5.21 0.00 44.22 3.02
1777 2109 5.531634 TGCTTCATTACCAAGAAAAGCAAG 58.468 37.500 5.21 0.00 44.22 4.01
1778 2110 5.528043 TGCTTCATTACCAAGAAAAGCAA 57.472 34.783 5.21 0.00 44.22 3.91
1779 2111 5.528043 TTGCTTCATTACCAAGAAAAGCA 57.472 34.783 3.65 3.65 45.15 3.91
1780 2112 6.215845 TCTTTGCTTCATTACCAAGAAAAGC 58.784 36.000 7.71 0.00 42.76 3.51
1781 2113 8.822652 ATTCTTTGCTTCATTACCAAGAAAAG 57.177 30.769 6.57 6.57 43.76 2.27
1782 2114 9.044150 CAATTCTTTGCTTCATTACCAAGAAAA 57.956 29.630 0.00 0.00 29.32 2.29
1783 2115 8.420222 TCAATTCTTTGCTTCATTACCAAGAAA 58.580 29.630 0.00 0.00 32.61 2.52
1784 2116 7.950512 TCAATTCTTTGCTTCATTACCAAGAA 58.049 30.769 0.00 0.00 32.61 2.52
1785 2117 7.309377 CCTCAATTCTTTGCTTCATTACCAAGA 60.309 37.037 0.00 0.00 32.61 3.02
1786 2118 6.810182 CCTCAATTCTTTGCTTCATTACCAAG 59.190 38.462 0.00 0.00 32.61 3.61
1787 2119 6.690530 CCTCAATTCTTTGCTTCATTACCAA 58.309 36.000 0.00 0.00 32.61 3.67
1788 2120 5.336690 GCCTCAATTCTTTGCTTCATTACCA 60.337 40.000 0.00 0.00 32.61 3.25
1789 2121 5.105063 GCCTCAATTCTTTGCTTCATTACC 58.895 41.667 0.00 0.00 32.61 2.85
1790 2122 5.105063 GGCCTCAATTCTTTGCTTCATTAC 58.895 41.667 0.00 0.00 32.61 1.89
1802 2134 1.558756 CTCAGGACTGGCCTCAATTCT 59.441 52.381 0.00 0.00 46.97 2.40
1821 2153 7.805083 ATAGCAAGTATGGTATGGATCTTCT 57.195 36.000 0.17 0.00 45.87 2.85
1849 2182 5.005740 TCACATCTTTGACTTAGCATTGCT 58.994 37.500 16.63 16.63 43.41 3.91
1852 2185 6.240894 TCCTTCACATCTTTGACTTAGCATT 58.759 36.000 0.00 0.00 0.00 3.56
1859 2192 3.350833 GCCATCCTTCACATCTTTGACT 58.649 45.455 0.00 0.00 0.00 3.41
1862 2195 1.402968 CGGCCATCCTTCACATCTTTG 59.597 52.381 2.24 0.00 0.00 2.77
1867 2200 2.124151 GGCGGCCATCCTTCACAT 60.124 61.111 15.62 0.00 0.00 3.21
1871 2204 2.044946 ACAAGGCGGCCATCCTTC 60.045 61.111 23.09 0.00 41.73 3.46
1898 2246 2.887783 GCGATCAGGGTTCAGAGATAGA 59.112 50.000 0.00 0.00 0.00 1.98
1900 2248 2.625314 CAGCGATCAGGGTTCAGAGATA 59.375 50.000 0.00 0.00 0.00 1.98
1907 2255 2.467826 GCTGCAGCGATCAGGGTTC 61.468 63.158 25.23 0.00 32.41 3.62
1950 2298 4.349342 AGCTAAATCTCCTCCGAAATCCAT 59.651 41.667 0.00 0.00 0.00 3.41
1959 2307 4.409247 TCAAACCCTAGCTAAATCTCCTCC 59.591 45.833 0.00 0.00 0.00 4.30
1966 2314 4.567747 CCAGTGGTCAAACCCTAGCTAAAT 60.568 45.833 0.00 0.00 37.50 1.40
1993 2345 1.033746 GGCTGGCCATATATGCGCAT 61.034 55.000 28.23 28.23 35.81 4.73
1994 2346 1.675310 GGCTGGCCATATATGCGCA 60.675 57.895 14.96 14.96 35.81 6.09
1995 2347 2.753966 CGGCTGGCCATATATGCGC 61.754 63.158 5.51 3.60 35.37 6.09
2014 2366 2.287977 AAACCCTAGCCCTTGTGTTC 57.712 50.000 0.00 0.00 0.00 3.18
2020 2372 2.639487 TCAGGTTAAACCCTAGCCCTT 58.361 47.619 0.00 0.00 39.75 3.95
2021 2373 2.354261 TCAGGTTAAACCCTAGCCCT 57.646 50.000 0.00 0.00 39.75 5.19
2022 2374 3.664551 AATCAGGTTAAACCCTAGCCC 57.335 47.619 0.00 0.00 39.75 5.19
2023 2375 5.106876 TGTAATCAGGTTAAACCCTAGCC 57.893 43.478 0.00 0.00 39.75 3.93
2024 2376 7.176165 ACTTTTGTAATCAGGTTAAACCCTAGC 59.824 37.037 0.00 0.00 39.75 3.42
2026 2378 9.729281 CTACTTTTGTAATCAGGTTAAACCCTA 57.271 33.333 0.00 0.00 34.88 3.53
2035 2387 5.246307 GCTCACCTACTTTTGTAATCAGGT 58.754 41.667 0.00 0.00 34.06 4.00
2058 2410 1.611851 AGTGAGTGGGAGCCTGAGG 60.612 63.158 0.00 0.00 0.00 3.86
2059 2411 1.190833 ACAGTGAGTGGGAGCCTGAG 61.191 60.000 0.00 0.00 0.00 3.35
2060 2412 1.152247 ACAGTGAGTGGGAGCCTGA 60.152 57.895 0.00 0.00 0.00 3.86
2061 2413 1.190833 AGACAGTGAGTGGGAGCCTG 61.191 60.000 0.00 0.00 0.00 4.85
2062 2414 0.902516 GAGACAGTGAGTGGGAGCCT 60.903 60.000 0.00 0.00 0.00 4.58
2063 2415 0.902516 AGAGACAGTGAGTGGGAGCC 60.903 60.000 0.00 0.00 0.00 4.70
2064 2416 0.972883 AAGAGACAGTGAGTGGGAGC 59.027 55.000 0.00 0.00 0.00 4.70
2065 2417 1.967066 ACAAGAGACAGTGAGTGGGAG 59.033 52.381 0.00 0.00 0.00 4.30
2066 2418 2.088104 ACAAGAGACAGTGAGTGGGA 57.912 50.000 0.00 0.00 0.00 4.37
2067 2419 2.232452 CCTACAAGAGACAGTGAGTGGG 59.768 54.545 0.00 0.00 0.00 4.61
2068 2420 3.157881 TCCTACAAGAGACAGTGAGTGG 58.842 50.000 0.00 0.00 0.00 4.00
2069 2421 5.167121 CAATCCTACAAGAGACAGTGAGTG 58.833 45.833 0.00 0.00 0.00 3.51
2070 2422 4.322349 GCAATCCTACAAGAGACAGTGAGT 60.322 45.833 0.00 0.00 0.00 3.41
2071 2423 4.180057 GCAATCCTACAAGAGACAGTGAG 58.820 47.826 0.00 0.00 0.00 3.51
2072 2424 3.578282 TGCAATCCTACAAGAGACAGTGA 59.422 43.478 0.00 0.00 0.00 3.41
2073 2425 3.930336 TGCAATCCTACAAGAGACAGTG 58.070 45.455 0.00 0.00 0.00 3.66
2074 2426 3.834813 TCTGCAATCCTACAAGAGACAGT 59.165 43.478 0.00 0.00 0.00 3.55
2075 2427 4.462508 TCTGCAATCCTACAAGAGACAG 57.537 45.455 0.00 0.00 0.00 3.51
2076 2428 4.467438 TCATCTGCAATCCTACAAGAGACA 59.533 41.667 0.00 0.00 0.00 3.41
2077 2429 5.016051 TCATCTGCAATCCTACAAGAGAC 57.984 43.478 0.00 0.00 0.00 3.36
2078 2430 4.958581 TCTCATCTGCAATCCTACAAGAGA 59.041 41.667 0.00 0.00 0.00 3.10
2079 2431 5.273674 TCTCATCTGCAATCCTACAAGAG 57.726 43.478 0.00 0.00 0.00 2.85
2080 2432 5.682234 TTCTCATCTGCAATCCTACAAGA 57.318 39.130 0.00 0.00 0.00 3.02
2081 2433 6.183360 CCTTTTCTCATCTGCAATCCTACAAG 60.183 42.308 0.00 0.00 0.00 3.16
2082 2434 5.649395 CCTTTTCTCATCTGCAATCCTACAA 59.351 40.000 0.00 0.00 0.00 2.41
2083 2435 5.188434 CCTTTTCTCATCTGCAATCCTACA 58.812 41.667 0.00 0.00 0.00 2.74
2084 2436 5.065731 CACCTTTTCTCATCTGCAATCCTAC 59.934 44.000 0.00 0.00 0.00 3.18
2085 2437 5.188434 CACCTTTTCTCATCTGCAATCCTA 58.812 41.667 0.00 0.00 0.00 2.94
2086 2438 4.015084 CACCTTTTCTCATCTGCAATCCT 58.985 43.478 0.00 0.00 0.00 3.24
2087 2439 3.760684 ACACCTTTTCTCATCTGCAATCC 59.239 43.478 0.00 0.00 0.00 3.01
2088 2440 5.382618 AACACCTTTTCTCATCTGCAATC 57.617 39.130 0.00 0.00 0.00 2.67
2089 2441 6.006449 ACTAACACCTTTTCTCATCTGCAAT 58.994 36.000 0.00 0.00 0.00 3.56
2090 2442 5.376625 ACTAACACCTTTTCTCATCTGCAA 58.623 37.500 0.00 0.00 0.00 4.08
2091 2443 4.973168 ACTAACACCTTTTCTCATCTGCA 58.027 39.130 0.00 0.00 0.00 4.41
2092 2444 7.041372 TGTTTACTAACACCTTTTCTCATCTGC 60.041 37.037 0.00 0.00 39.29 4.26
2093 2445 8.378172 TGTTTACTAACACCTTTTCTCATCTG 57.622 34.615 0.00 0.00 39.29 2.90
2094 2446 8.211629 ACTGTTTACTAACACCTTTTCTCATCT 58.788 33.333 0.00 0.00 39.29 2.90
2095 2447 8.379457 ACTGTTTACTAACACCTTTTCTCATC 57.621 34.615 0.00 0.00 39.29 2.92
2096 2448 9.490379 CTACTGTTTACTAACACCTTTTCTCAT 57.510 33.333 0.00 0.00 39.29 2.90
2097 2449 8.698210 TCTACTGTTTACTAACACCTTTTCTCA 58.302 33.333 0.00 0.00 39.29 3.27
2098 2450 9.538508 TTCTACTGTTTACTAACACCTTTTCTC 57.461 33.333 0.00 0.00 39.29 2.87
2099 2451 9.543783 CTTCTACTGTTTACTAACACCTTTTCT 57.456 33.333 0.00 0.00 39.29 2.52
2100 2452 9.538508 TCTTCTACTGTTTACTAACACCTTTTC 57.461 33.333 0.00 0.00 39.29 2.29
2101 2453 9.895138 TTCTTCTACTGTTTACTAACACCTTTT 57.105 29.630 0.00 0.00 39.29 2.27
2102 2454 9.322773 GTTCTTCTACTGTTTACTAACACCTTT 57.677 33.333 0.00 0.00 39.29 3.11
2103 2455 7.650903 CGTTCTTCTACTGTTTACTAACACCTT 59.349 37.037 0.00 0.00 39.29 3.50
2104 2456 7.144000 CGTTCTTCTACTGTTTACTAACACCT 58.856 38.462 0.00 0.00 39.29 4.00
2105 2457 6.920210 ACGTTCTTCTACTGTTTACTAACACC 59.080 38.462 0.00 0.00 39.29 4.16
2106 2458 7.566508 GCACGTTCTTCTACTGTTTACTAACAC 60.567 40.741 0.00 0.00 39.29 3.32
2107 2459 6.418819 GCACGTTCTTCTACTGTTTACTAACA 59.581 38.462 0.00 0.00 41.82 2.41
2108 2460 6.640092 AGCACGTTCTTCTACTGTTTACTAAC 59.360 38.462 0.00 0.00 34.75 2.34
2109 2461 6.742109 AGCACGTTCTTCTACTGTTTACTAA 58.258 36.000 0.00 0.00 0.00 2.24
2110 2462 6.323203 AGCACGTTCTTCTACTGTTTACTA 57.677 37.500 0.00 0.00 0.00 1.82
2111 2463 5.197682 AGCACGTTCTTCTACTGTTTACT 57.802 39.130 0.00 0.00 0.00 2.24
2112 2464 7.115947 ACAATAGCACGTTCTTCTACTGTTTAC 59.884 37.037 0.00 0.00 0.00 2.01
2113 2465 7.149973 ACAATAGCACGTTCTTCTACTGTTTA 58.850 34.615 0.00 0.00 0.00 2.01
2114 2466 5.989777 ACAATAGCACGTTCTTCTACTGTTT 59.010 36.000 0.00 0.00 0.00 2.83
2115 2467 5.539048 ACAATAGCACGTTCTTCTACTGTT 58.461 37.500 0.00 0.00 0.00 3.16
2116 2468 5.135508 ACAATAGCACGTTCTTCTACTGT 57.864 39.130 0.00 0.00 0.00 3.55
2117 2469 4.263209 CGACAATAGCACGTTCTTCTACTG 59.737 45.833 0.00 0.00 0.00 2.74
2118 2470 4.082895 ACGACAATAGCACGTTCTTCTACT 60.083 41.667 0.00 0.00 36.91 2.57
2119 2471 4.164294 ACGACAATAGCACGTTCTTCTAC 58.836 43.478 0.00 0.00 36.91 2.59
2120 2472 4.430137 ACGACAATAGCACGTTCTTCTA 57.570 40.909 0.00 0.00 36.91 2.10
2121 2473 3.299340 ACGACAATAGCACGTTCTTCT 57.701 42.857 0.00 0.00 36.91 2.85
2122 2474 5.697848 ATTACGACAATAGCACGTTCTTC 57.302 39.130 0.00 0.00 40.61 2.87
2123 2475 5.636121 TGAATTACGACAATAGCACGTTCTT 59.364 36.000 0.00 0.00 40.61 2.52
2124 2476 5.165676 TGAATTACGACAATAGCACGTTCT 58.834 37.500 0.00 0.00 40.61 3.01
2125 2477 5.444586 TGAATTACGACAATAGCACGTTC 57.555 39.130 0.00 0.00 40.61 3.95
2126 2478 5.849357 TTGAATTACGACAATAGCACGTT 57.151 34.783 0.00 0.00 40.61 3.99
2127 2479 5.849357 TTTGAATTACGACAATAGCACGT 57.151 34.783 0.00 0.00 42.70 4.49
2128 2480 6.570058 GCTATTTGAATTACGACAATAGCACG 59.430 38.462 14.46 0.00 35.66 5.34
2129 2481 6.570058 CGCTATTTGAATTACGACAATAGCAC 59.430 38.462 17.79 0.00 35.52 4.40
2130 2482 6.256975 ACGCTATTTGAATTACGACAATAGCA 59.743 34.615 17.79 5.21 35.52 3.49
2131 2483 6.646636 ACGCTATTTGAATTACGACAATAGC 58.353 36.000 10.77 10.77 34.26 2.97
2132 2484 7.787935 GTGACGCTATTTGAATTACGACAATAG 59.212 37.037 0.00 0.00 0.00 1.73
2133 2485 7.513969 CGTGACGCTATTTGAATTACGACAATA 60.514 37.037 0.00 0.00 0.00 1.90
2134 2486 6.475207 GTGACGCTATTTGAATTACGACAAT 58.525 36.000 0.00 0.00 0.00 2.71
2135 2487 5.443562 CGTGACGCTATTTGAATTACGACAA 60.444 40.000 0.00 0.00 0.00 3.18
2136 2488 4.030865 CGTGACGCTATTTGAATTACGACA 59.969 41.667 0.00 0.00 0.00 4.35
2137 2489 4.493481 CGTGACGCTATTTGAATTACGAC 58.507 43.478 0.00 0.00 0.00 4.34
2138 2490 4.748503 CGTGACGCTATTTGAATTACGA 57.251 40.909 0.00 0.00 0.00 3.43
2153 2505 3.842126 CTGTGCATCGGCGTGACG 61.842 66.667 6.85 0.00 45.35 4.35
2154 2506 3.490759 CCTGTGCATCGGCGTGAC 61.491 66.667 6.85 6.06 45.35 3.67
2155 2507 3.647649 CTCCTGTGCATCGGCGTGA 62.648 63.158 6.85 0.00 45.35 4.35
2156 2508 3.190849 CTCCTGTGCATCGGCGTG 61.191 66.667 6.85 5.92 45.35 5.34
2160 2512 3.335356 AAGGGCTCCTGTGCATCGG 62.335 63.158 0.00 0.00 32.13 4.18
2161 2513 2.110967 CAAGGGCTCCTGTGCATCG 61.111 63.158 0.00 0.00 32.13 3.84
2162 2514 1.751927 CCAAGGGCTCCTGTGCATC 60.752 63.158 0.00 0.00 32.13 3.91
2163 2515 1.578215 ATCCAAGGGCTCCTGTGCAT 61.578 55.000 0.00 0.00 32.13 3.96
2164 2516 2.202236 GATCCAAGGGCTCCTGTGCA 62.202 60.000 0.00 0.00 32.13 4.57
2165 2517 1.452833 GATCCAAGGGCTCCTGTGC 60.453 63.158 0.00 0.00 32.13 4.57
2166 2518 1.153289 CGATCCAAGGGCTCCTGTG 60.153 63.158 0.00 0.00 32.13 3.66
2167 2519 2.370445 CCGATCCAAGGGCTCCTGT 61.370 63.158 0.00 0.00 32.13 4.00
2168 2520 2.037620 CTCCGATCCAAGGGCTCCTG 62.038 65.000 0.00 0.00 32.13 3.86
2169 2521 1.764054 CTCCGATCCAAGGGCTCCT 60.764 63.158 0.00 0.00 33.87 3.69
2170 2522 1.124477 ATCTCCGATCCAAGGGCTCC 61.124 60.000 0.00 0.00 0.00 4.70
2171 2523 0.320050 GATCTCCGATCCAAGGGCTC 59.680 60.000 0.00 0.00 0.00 4.70
2172 2524 0.399091 TGATCTCCGATCCAAGGGCT 60.399 55.000 0.00 0.00 0.00 5.19
2173 2525 0.469917 TTGATCTCCGATCCAAGGGC 59.530 55.000 0.00 0.00 0.00 5.19
2174 2526 1.486310 TGTTGATCTCCGATCCAAGGG 59.514 52.381 0.00 0.00 0.00 3.95
2175 2527 2.988010 TGTTGATCTCCGATCCAAGG 57.012 50.000 0.00 0.00 0.00 3.61
2176 2528 3.136763 CCATGTTGATCTCCGATCCAAG 58.863 50.000 0.00 0.00 0.00 3.61
2177 2529 2.158769 CCCATGTTGATCTCCGATCCAA 60.159 50.000 0.00 0.00 0.00 3.53
2178 2530 1.417517 CCCATGTTGATCTCCGATCCA 59.582 52.381 0.00 0.00 0.00 3.41
2179 2531 1.879796 GCCCATGTTGATCTCCGATCC 60.880 57.143 0.00 0.00 0.00 3.36
2180 2532 1.071385 AGCCCATGTTGATCTCCGATC 59.929 52.381 0.00 0.00 0.00 3.69
2181 2533 1.135094 AGCCCATGTTGATCTCCGAT 58.865 50.000 0.00 0.00 0.00 4.18
2182 2534 0.178767 CAGCCCATGTTGATCTCCGA 59.821 55.000 0.00 0.00 0.00 4.55
2183 2535 1.442526 GCAGCCCATGTTGATCTCCG 61.443 60.000 0.00 0.00 0.00 4.63
2184 2536 1.442526 CGCAGCCCATGTTGATCTCC 61.443 60.000 0.00 0.00 0.00 3.71
2185 2537 0.462581 TCGCAGCCCATGTTGATCTC 60.463 55.000 0.00 0.00 0.00 2.75
2186 2538 0.745845 GTCGCAGCCCATGTTGATCT 60.746 55.000 0.00 0.00 0.00 2.75
2187 2539 1.723870 GTCGCAGCCCATGTTGATC 59.276 57.895 0.00 0.00 0.00 2.92
2188 2540 2.108514 CGTCGCAGCCCATGTTGAT 61.109 57.895 0.00 0.00 0.00 2.57
2189 2541 2.741985 CGTCGCAGCCCATGTTGA 60.742 61.111 0.00 0.00 0.00 3.18
2190 2542 3.027170 GACGTCGCAGCCCATGTTG 62.027 63.158 0.00 0.00 0.00 3.33
2191 2543 2.742372 GACGTCGCAGCCCATGTT 60.742 61.111 0.00 0.00 0.00 2.71
2192 2544 3.649277 GAGACGTCGCAGCCCATGT 62.649 63.158 14.83 0.00 0.00 3.21
2193 2545 2.887568 GAGACGTCGCAGCCCATG 60.888 66.667 14.83 0.00 0.00 3.66
2194 2546 4.148825 GGAGACGTCGCAGCCCAT 62.149 66.667 21.01 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.