>input_sequence_86840
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-----------------------------------------------ATGGTGGGATTCGGTAGCCTTGCTCCCAAGACC
AAGAACCTGGTGGTGGGCGGTGGGTTGACGGGGTTCGTCTTTGGGGTGTACTATTACACCATGAGAGCAGTCGGCAGCAC
TGATGAGCTGCAGGTCGCCATCGACAAGTTTGAAGACCTGAAGAAGAAGGACGCCGACGCCACCCCCGCTGCAAACCCCT
CCACCCCAGGCTCATCGTAG------------------------------------------------------------
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>chr7A_1_TraesCS7A01G330700
AAGGAAGGAGACAAAATATTTTGTACTGTATATAATTTCTGGTTATATGATCCATGTAGCACT-----------------
-----TTCAGTGACTCCATGACATGCAATTGCAAATAGGGTTTC-AATTTTCATAGCATCA-ACCACAAGGGTAC---TG
CAATGGTTAGTGAACGCAGATTATAAATTCGTGAGCTCCCAAAAATGTAATCATGTTCTGTGCAA-------ACGACTGA
ACGAGGAATTGTGGAAGAATTT-TTTTCTAACTTCCTTCGAATTTTCTTTCAGTAAGTCACCATGTCAGAATGCCAATTA
TCAGCGCTATGATAAATTGCATC---------------------------------------------------------
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-----------------------------------------------------------------ATGTGTCGTTTACAC
ATTTCAGCACAGTGGTCTATATAGA--------TTCAACTTACATGTGCTCTATCGAAAGGGAATTGCTCTTCTCTGTAC
TTAGCATATGGAGAAACATGAAGAACTTAAGCTGGGGTTTCGAGTGCTTCATTTAGTCTTAAAAAGTTCACCCAACAAAT
CTCACACATGGCCCAGGTGAAGCTTTGAAACAGCATGTACAGTATTATTTAGTTTCCCTCTCGACTCATTTGATCCTTGT
TGCTGACAAGTTCCAACACTATTTTTCACTCTGAAGTTGCTAACAAAGTAACAAGTAGACAGAC----------------
------------------------CTTGTTAGAGTGCTCTGTACTGTATACACGAAAGCTGTTTCAGTAGTTCCTGTTTT
GATGTACAAATAATATTTGTTTTATCTGGAAAGGCTACACATCAGTAACACCTATTTTCCTTCGATAAAACAGAA-----
TA-TTTTTTTAGGGTAACACTGACTGAAGTCACATTTGAGTTGCTGCAGAACTACGAGTGTTAAAATTGTGTAACTTCTA
GAGGGGAGCCAG----AAGAAGGAAACCGAAGTCATGTGCTTGAATCTCTATGTTTATACTGTCACACATT---------
-----------------------TACATAGCCTTTGCATTTTGAATTGATATCAACATGTCCCACAAGTTGCCATAACAT
TTCCATATCTGTGTCCTGCATGCAGCAGCGCCGAGTTGCCGGAGCAGATGGTGGGATTCGGTAGCCTTGCTCCCAAGACC
AAGAACCTGGTGGTGGGCGGTGGGTTGACGGGGTTCGTCTTTGGGGTGTACTATTACACCATGAGAGCAGTCGGCAGCAC
TGATGAGCTGCAGGTCGCCATCGACAAGTTTGAAGACCTGAAGAAGAAGGACGCCGACGCCACCCCCGCTGCAAACCCCT
CCACCCCAGGCTCATCGTAGGAAAAA-CATGCTCTGAAACTTTTGTTTACCCGTACCGAGCTTCTAAACTAGTTACCTCA
CAACCAGAACCCAGAACCATGGTTTGGTTTCTGTGATGATAATAGGTCATGTTAGATAGAGCTTTTTATGGCATGGGTGG
AGTCCAGAATTAGTAGTGCTTTAGTGTT---TATGGTGACCGCGGTGCCTGGAAGTTTGATATACTAGTACTGGAGTAGA
TTTTTTGGAGGCACGTTATTGCAGTTTGTTGCTATTATATATTCATTCCGTTCTTGATCACCAAGAACTTTGCAGGAACT
CCCTGATCAACCTCAGACCACACTTGCACGGGAGCAAGCATCGGATAGAAAAGTGTTCCACCTCCATGAAACAAAGCTCG
CCACGTGCAAAGAAGTCTTTTGGAGATCCATTTCCTCTCCAACATGCAAACACTCCTAACGCACTGACCAGAGGATTCAC
GCCAAAGCCTCGTCAAGAAGATCTTCAAGAAACCTCCTACGATCTTCAAAGGTTTGTCATGCAGCTCATCCTGGGGAAAT
GCGCCCTTGGAATCCATGGCGGAAAGTTCTTGCTTTTCTTGGTAATGAAGCAAAGAATTGAGGCCAGTCCTGAGAAGATC
CATACCATACTTGCTAT-AGCAGCAATGCTAAGTCAAAGATGTGA---------------AGGATGGCCGCCTTGTCAGG
TTCAGTCTATCTCTGAACCCTGATCGCTGCAGCACACACTAATTTGAACAGAAATGGATGGATTTCGGAGGAGATT----
TAGCTAGGGTTTGACCACTGGTAGATGCGCATATATGGCCAGCCGGAACACAAGGGCTAGGGTTTAACCTGATTACAAAA
GTAGGTGAGCCTCAGGCTCCCACTCACTGTCTCTTGTAGGATTGCAGATGAGAAAAGGTGTTAGTAAACAGTAGAAGAAC
GTGCTATTGTCGTAATTCAAATAGCGTCACGCCGATGCACAGGAGCCCTTGGATCGGAGATCAACATGGGCTGCGACGTC
TCCC
>chr7B_2
-AGGAAGGAGACAAATATTT------TGTATATAATTTCTGGTTATATGATCCATGTAGCACTGCATCACAGGGAAGGGA
GTAAATTAAATGGCTCC---ACTTGCAATTGCATATAGGATTTCCAATTTTCATAGCATCA-ACCGCAAGAGGGACTGTT
CAACAGTTAGCCAACGTGGATTATAAATTTGCGAACTCTCAAAAATGTAATCATGTTCTGTGTGC-------ACGACTGA
ACTAGCAATCGTGGAAGAACAAAATTTCTAACTTCCTTAGAATTTTCTTTCAGTATTTCACTCTGTCAGAATGCCAATTA
TCAGCGCTATGGTAAATTGCATCGTGCATTGTTCCAAATATCGCCCAGTTAATCGGCATCTCGGTCAGTTAATCACTACT
TGGTGGGTCACCGAGTAGCTGATTAACTGATTTATTGGTTGGATAACTAATTTATTGGCCGATTAACTGGACAATTCGCC
TATTTATCCCTACTCAGCACCCTACCGGTATGGTACCAGTTAACGATATCCTGAACATTGGCATCATGTGTCGTTCACAC
ACTTCAGTGCAGTGGTCTATATAGGTTTTCTTTTTCAACGTACATGTGCTCTATC------------------TCTGTAT
GTAGCGTATGGGAAAACATGAAGAAATTAAGCTGAGGTCTCGAGTGCTGCATTTCGTTTTAAAAAGTTCACCCAACAAAT
CTCACACATGGCCCAAGTGAAGCTTGGAAACGGCATGTTCTTATTTATACTC---CCCTCTCGACTCATTGAATCCTTGT
TGCTGACAAGTTCCAACACTATTTTTCACTATGAAGTTGCTAACAA--------GTAGACAGACCTTGTGAGGTAGGTGG
CTGTTTAGATTCGATATTG---TGCTTGTTAGAGTGCCCTGACTGCACAGAA-GAAAGCTGTCTCAGTAGTTCCTGTTTT
GATGTACAAATAATATGT-TTTTAGCTGGAGAGGCTACTCATCAGTAACACCTATTTTCTTTCGAGAAAACAGCAACGCC
TATTTTTTTTAGGGTAATACG----GAAGTAACATTTTAGTTGCTGCAGAATTGCGAGTGTT-AAATTGTGTAACAGCTA
GAGGGGAGCCAGGTTGAAGGAGGAAATTGAAGCCATGTGCTCACTCTATAATATTTGTACTGTC-TAACTGCCTCCTGAT
GCCCAATGCGAGATTCACACTTCTACATAGCCTTTGCATTTTGAATTGATATCAACATGTCCC--AAGTTGCCATAACAT
TTCCATCTCTGTGTCCTGTATGCAGCAGCGCCGAGTTGCCGGAGCAGATGGTGGGATTTGGTAGCCTTGCGCCCAAGACC
AAGAACCTGGTGGTGGGCGGTGGGCTGACAGGGTTCGTCTTTGGGGTGTACTACTACACCATGAGAGCGGTTGGCAGCAC
TGATGAGCTGCAGGTCGCCATCGACAAGTTTGAAGACCTGAAGAAGAAGGACGCCGCAGCCACCCCCGCCGCAAACCCCT
CCACCCCAGGCTCATCGTAGGAAAAAACATGCTCTTAAACTTTTGTTTCCCTGTACCGAGCTTCTAAACTAGTTACCTCA
CAATTTGCA------------------------TGATGATAATGGGTCATGTTAGATAGAGCTTTTTATGGCATGGGTGA
AGTCCAGATTT---------------------------------------------------------------------
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>chr7D_28
---------------------------GTATATAATTTCTGGTTATATGATCCATGTAGCACTGCATCGCACGGAAGGGA
GTAAATTAAATGACTCCATCACTTGCAATTGCATATAGGGTTTCAAATTTTCATAGCATCAAACCGCAAGAGGGACTGTT
CAACAGTTAGCCAACTTGGATTATAAATTTGCGAGCTCCCAAAAATGTAATCATGTTCTCTGCGA-------ACGACTGA
ACTAGCAATCGTGGAAGAACAAATTTTCTAAC----TTAGAATTTTCTTTCAGTATTTCACTCTGTCAGAATGCCAATTA
TCAGCGCTATGGTAAATTGCATCGTGCATTGTTCCAAATATCGGCCAGTTAATCGGCATCTCGGTCAGTTAATCACTACT
CGGTAGGTCACCTAGTAGCTGATTAACTGATTTATCGGTCGGATAACTGATTTATTGGCCGATTAACTGCACAATTCGCC
TATTTATCCCTACTCAGCACCCGACTGGTATGTTACCAGTTATCGATATCCTGAACATTGGCATCATGTGTCGTTCACAC
ACTTCAGTGCAGTGGTCTATATAGGTTTTCCTTTTCAACTT----GTGCTCTATC------------------TCCGTAT
GTAGTGTATGGAAAAACATGAAGAAATTAAGCTGAGGTCTCGAGTGCTGCATTTCGTCTTAAAAAGTTCACCCAACAAA-
CTCACACATGGCCCAAGTGAAGCTTTGAAACAGCATGTTCTTATTTATA---TTTCCCTCTTGACTCATTGGATCCTTGT
TGCTGACAAGTTCCAACACTATTTTTCACTATGAAGTTGCTAACAA--------GTAGACAGATCTTGTGAGGTAGGTGA
CTGTTCAGATTCGATATTGCTGTGCTTGTTAGAGTGCCCTGACTGCACAGAA-GAAAGCTGTCTCAGGAGTTCCTGTTTT
GATGTACAAATAATATGT-TTTTAGCTGGAGAGGCTACTCATCAGTAACACCTATTTTCTTTCGAGAAATCAGCAACCTC
TA-TTTCTTTAGGGTAATACG----GAAGTAACATTTGAGTTGCTGCAGAATTACAAGTGTT-AAATTGTGTAACCGCTA
GAGGGGAGCCAGGTTGAAGAAGGAAATTGAAGCCATGTGCTCACTCTATAATATTTGTACTGTCTTAACTGCCTCCTGAT
GCC---TGCGAGATTCGCACTTGTACATAGCCTTTGCATTTTGAATTGATATCAACATGTCCC--AAGTTGCCATAACAT
TTCCATCTCTGTGTCCTGTATGCAGCAGGGCCGAGTTGCCGGAGCAGATGGTGGGATTTGGTAGCCTCGCGCCCAAGACC
AAGAACCTGGTGGTGGGCGGCGGGCTGACAGGGTTCGTCTTTGGGGTGTACTACTACACCATGAGAGCGGTTGGCAGCAC
TGATGAGCTGCAGGTCGCCATCGACAAGTTTGAAGACCTGAAGAA---GGACGCCGCGGCCACCCCCACCGCAAACCCCT
CCACCCCAGGCTCATCGTAGGAAAAAACATGCTCTTAAACTTTTGTTTACCTGTACCGAGCTTCTAAACTAGTTACCTCA
CAATTTGTA------------------------TGATGATAATGGGTCATGTTAGATAGAGCTTTTTATGGCATGGGCGA
AGTCCAGAATTAGTAATGCTTTTGTGTTGGTTATGGTGGCTGCGGTTCCTGGAAGTTTGATATACTACTACTGGAGCAGA
ATTTTTGGAGGCACGTTATTGCAGTTTGTTGCTATTAC--ATTCATTTCGTTCTTGATCTCCAAGAACCTTGTAGGACCC
CCCTGATCAACCTTCCT--------------------------------AAATTGTTCCACCTTCATGAAACAAAGCTC-
-------------------------------------TCCAACATGGAAAAACTCGTAATGGACTGACCAGAGGATTCAC
GCCAAAGCTTCGTCCAGAAGATCTTCAAGAAACCTCCTCCAATCTTCAAAGGTTTGGCATGCAGCTCATCCTGG------
------------------------------------------TAATGAAGCAAGGAATTGAGGCCAGTCCTGGGAAGATC
CATACCATACTTGCATTGAGCGGCCATGCTAGGTAAAAGCTGTAAATCGCCTCACGAGAAAGGATGACCGCCTTGTCAGG
TTCAGGCAATCTCTAAACCCTGATCGCTGCAGCACACACTAATTTGAACAGAAATGGGTGGATTTCAGAGGAGCTTTAGC
TAGCTAGGGTTTGACCACTGGTAG---CGCATATATGGCCAGCCGCAACACGGCCACGAGGGTTTATCCTGATTACAAAT
GTAGG---------------------------------------------------------------------------
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----
>chr7A_82
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-----------------------TGCAATAGCATATTAGGTTTCAAATTTTCATAGCATCAACG-GCAAGGGGGACTGTG
CAACGGTTAACCAACGTGGATTATAAATTTGCAAGCTCCCAAAAATGTAATCATGTTCTGTGCGAAGTGCGAACGACTGA
ACGAGGAATCGTGGAAGAACAAATATTCTAACTTCCTTCAAATTTTCTTTCAGTATGTCACCATGTCAGAATGCCAATTA
TCAGCGCTATGATAAATTGCATC---------------------------------------------------------
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-----------------------------------------------------------------ATGTGTCGTTCACAC
ATTTCAGCACAGTGGTCTATATAGATTTTCTTTTTCAACTTACATGTGCTCTATCGAAAGGGAATTGCTCTTCTCTGTAC
GTAGCATATGGAGAAACATGAAGAACTTAAGCTGGGGTCTCGAGTGCTTCATTTAGTCTTAAAAAGTTCACCCAACAAAT
CTCACACATGGCCCAGGTGAAGCTTTGAAACTGCATGTACAGTATTATTTAGTTTCCCTCTCGACTCATTTGATCCTTCT
TGCTGACAAGTTCCAACACTATTTTTCACTCTGAAGTTGCTAACAAAGTAACAAGTAGACAGAC----------------
------------------------CTTGTTAGAGTGCTCTGTACTGTATACACGAAAGCTGTTTCAGTAGTTCCTGTTTT
GATGTACAAATAATATTTATTTTATCTGGAAAGGCTACACATCAGTAACACCT---------CGATAAAACAGAA-----
TA-TTCTTTTAGGGTAACACC----GAAGTCACATTTGAGTTGCTGCAGAACTACGAGTGTTAAAATTGTGTAACTGCTA
GAGGGGAGCCAG----AAGAAGGAAACCGAAGTCATGTGCTTGAATCTCTATGTTTATACTGTCACACATT---------
-----------------------TACATAGCCTTTGCATTTTGAATTGATATCAACATGTCCCACAAGTTGCCATAACAT
TTCCATATCTGTGTCCTGCATGCAGCAGCGCCGAGTTGCCGGAGCAGATGGTGGGATTCGGTAGCCTTGCTCCCAAGACC
AAGAACCTGGTGGTGGGCGGTGGGTTGACGGGGTTCGTCTTTGGGGTGTACTATTACACCATGAGAGCAGTCGGCAGCAC
TGATGAGCTGCAGGTCGCCATCGACAAGTTCGAAGACCTGAAGAAGAAGGACGCCGACGCCAACCCCGCCGCACACCCCT
CCACCCCAGGCTCATCGTAGGAAAAAAACATGAACTTAAATTTTGTTTACCTGTACCAAGCTTGTAAACTAGTTACCTCA
CAACTAGAGCCCAGAACCATGGCTTGGTTTCTTTGATGATAATGGGTCATGTTAGATAGAGCTTTTCATGGCATGGGTGG
GGTCCAGAATTAGTAATGCTTTTGTGT---TTATGGTGGCCACGGTGCCTGGAAGTTTGATATACT--------------
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>SNPs
S--------------SSS--SSSSSS------------------------------------------------------
-------S-S---------S--S----------S-------------------------------S------SSS-----
---S------SS----SS-----------S-S-------------------------------S----------------
---------S---------SSS---------------------------------S------------------------
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---------------------------------------------------------------------------S----
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S-------------------------------------S-----------------------------------------
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------------------S----------------------------------------S--------------------
--------------------SSSSS---------------------------------------------------S---
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---------------------------------------------------------------------S----------
-----------------------------------S---------------S----------------------------
----S-----------------S---------S----------S------------------------------------
---------------S------S---------------S----------------------------S--------S---
S------------------------------------SSS-------S-----------S--------S---S----S-S
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S---------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---S----S---S-S------------------
--------S-----S-----------------------S-S---------------S-----------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S------------------S-------
--------------SS-----S--S------S--S----S---S----------------------S-------------
-----S-S------S------------------------------------------S--------S------S------
------------------------SSS------------------S-----SSSSS-S--------S------------S
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_178
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-----------------------------------------------------------------------------CTG
CAATGGTTAGTGAACGCA--------------------------------------------------------------
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>reverse_2075
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--------------------------------------------------------------------------GGAAAT
GCGCCCTTGGAATC------------------------------------------------------------------
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