Multiple sequence alignment - TraesCS7A01G314100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G314100 chr7A 100.000 2612 0 0 1 2612 448099067 448101678 0.000000e+00 4824
1 TraesCS7A01G314100 chr7A 89.796 245 22 3 212 454 512748429 512748186 7.020000e-81 311
2 TraesCS7A01G314100 chr7A 100.000 167 0 0 2094 2260 448100997 448101163 2.520000e-80 309
3 TraesCS7A01G314100 chr7A 100.000 167 0 0 1931 2097 448101160 448101326 2.520000e-80 309
4 TraesCS7A01G314100 chr7A 94.886 176 7 1 1 174 620843081 620842906 9.210000e-70 274
5 TraesCS7A01G314100 chr7A 87.552 241 23 5 215 450 620842456 620842218 3.310000e-69 272
6 TraesCS7A01G314100 chr7A 95.783 166 7 0 1933 2098 138380630 138380795 4.280000e-68 268
7 TraesCS7A01G314100 chr7A 96.296 162 6 0 2096 2257 138380630 138380791 1.540000e-67 267
8 TraesCS7A01G314100 chr7A 87.864 206 25 0 2407 2612 167904594 167904389 2.600000e-60 243
9 TraesCS7A01G314100 chr7A 92.754 138 8 2 1470 1606 448100305 448100441 5.700000e-47 198
10 TraesCS7A01G314100 chr7A 92.754 138 8 2 1239 1375 448100536 448100672 5.700000e-47 198
11 TraesCS7A01G314100 chr7A 93.421 76 5 0 172 247 84711982 84712057 2.120000e-21 113
12 TraesCS7A01G314100 chr7D 96.114 1364 40 9 530 1891 394830615 394831967 0.000000e+00 2213
13 TraesCS7A01G314100 chr7D 94.318 176 8 1 1 174 203331632 203331807 4.280000e-68 268
14 TraesCS7A01G314100 chr7D 88.208 212 25 0 2401 2612 166514228 166514017 1.200000e-63 254
15 TraesCS7A01G314100 chr7D 92.899 169 12 0 2092 2260 622227551 622227719 2.010000e-61 246
16 TraesCS7A01G314100 chr7D 92.398 171 13 0 1927 2097 622227549 622227719 7.220000e-61 244
17 TraesCS7A01G314100 chr7D 91.304 138 10 2 1470 1606 394831316 394831452 1.230000e-43 187
18 TraesCS7A01G314100 chr7D 92.969 128 9 0 1248 1375 394831556 394831683 1.230000e-43 187
19 TraesCS7A01G314100 chr7D 91.566 83 6 1 1928 2009 549684688 549684770 2.120000e-21 113
20 TraesCS7A01G314100 chr7D 92.405 79 6 0 2094 2172 549684692 549684770 2.120000e-21 113
21 TraesCS7A01G314100 chr7B 93.288 1460 60 23 442 1891 394401939 394403370 0.000000e+00 2119
22 TraesCS7A01G314100 chr7B 100.000 166 0 0 1931 2096 679494537 679494702 9.080000e-80 307
23 TraesCS7A01G314100 chr7B 100.000 166 0 0 2094 2259 679494537 679494702 9.080000e-80 307
24 TraesCS7A01G314100 chr7B 88.341 223 25 1 2390 2612 394403780 394404001 1.540000e-67 267
25 TraesCS7A01G314100 chr7B 88.679 212 24 0 2401 2612 130747242 130747031 2.580000e-65 259
26 TraesCS7A01G314100 chr7B 91.463 164 14 0 1935 2098 452963746 452963583 2.620000e-55 226
27 TraesCS7A01G314100 chr7B 91.411 163 14 0 2098 2260 452963746 452963584 9.410000e-55 224
28 TraesCS7A01G314100 chr7B 90.533 169 15 1 1927 2094 580857464 580857632 3.380000e-54 222
29 TraesCS7A01G314100 chr7B 90.909 165 15 0 2093 2257 580857468 580857632 3.380000e-54 222
30 TraesCS7A01G314100 chr7B 92.754 138 8 2 1470 1606 394402724 394402860 5.700000e-47 198
31 TraesCS7A01G314100 chr7B 92.754 138 8 2 1239 1375 394402955 394403091 5.700000e-47 198
32 TraesCS7A01G314100 chr3B 100.000 167 0 0 2094 2260 595291187 595291021 2.520000e-80 309
33 TraesCS7A01G314100 chr3B 100.000 167 0 0 1931 2097 595291187 595291021 2.520000e-80 309
34 TraesCS7A01G314100 chr3B 100.000 162 0 0 2096 2257 785459144 785458983 1.520000e-77 300
35 TraesCS7A01G314100 chr3B 100.000 162 0 0 1933 2094 785459144 785458983 1.520000e-77 300
36 TraesCS7A01G314100 chr2A 99.412 170 1 0 1927 2096 36232861 36232692 2.520000e-80 309
37 TraesCS7A01G314100 chr2A 99.408 169 1 0 2094 2262 36232857 36232689 9.080000e-80 307
38 TraesCS7A01G314100 chr1D 86.926 283 26 7 174 447 436122027 436121747 9.080000e-80 307
39 TraesCS7A01G314100 chr1D 94.318 176 8 1 1 174 389543604 389543429 4.280000e-68 268
40 TraesCS7A01G314100 chr1D 92.814 167 12 0 2094 2260 399188172 399188006 2.600000e-60 243
41 TraesCS7A01G314100 chr1D 92.814 167 12 0 1931 2097 399188172 399188006 2.600000e-60 243
42 TraesCS7A01G314100 chr1A 89.712 243 19 4 214 450 308947214 308947456 3.270000e-79 305
43 TraesCS7A01G314100 chr1A 83.566 286 37 9 172 449 580418242 580418525 2.580000e-65 259
44 TraesCS7A01G314100 chr4D 100.000 162 0 0 2096 2257 211742106 211741945 1.520000e-77 300
45 TraesCS7A01G314100 chr4D 100.000 162 0 0 1933 2094 211742106 211741945 1.520000e-77 300
46 TraesCS7A01G314100 chr4D 88.889 243 17 7 215 449 362723658 362723418 9.140000e-75 291
47 TraesCS7A01G314100 chr4D 94.886 176 7 1 1 174 468276116 468275941 9.210000e-70 274
48 TraesCS7A01G314100 chr4D 94.318 176 8 1 1 174 362724285 362724110 4.280000e-68 268
49 TraesCS7A01G314100 chr4D 86.640 247 22 8 212 449 468275528 468275284 1.990000e-66 263
50 TraesCS7A01G314100 chr4D 86.831 243 21 8 215 449 319330133 319330372 7.170000e-66 261
51 TraesCS7A01G314100 chr4D 89.412 170 17 1 2096 2264 231978423 231978254 2.040000e-51 213
52 TraesCS7A01G314100 chr4D 89.412 170 16 2 1929 2097 231978426 231978258 2.040000e-51 213
53 TraesCS7A01G314100 chr4D 90.588 85 5 2 172 253 7041710 7041626 2.750000e-20 110
54 TraesCS7A01G314100 chr6D 94.886 176 7 1 1 174 370844415 370844240 9.210000e-70 274
55 TraesCS7A01G314100 chr3D 94.886 176 7 1 1 174 535490833 535491008 9.210000e-70 274
56 TraesCS7A01G314100 chr3D 90.960 177 14 2 1918 2094 467281029 467281203 1.210000e-58 237
57 TraesCS7A01G314100 chr3D 91.329 173 14 1 2092 2264 467281038 467281209 4.350000e-58 235
58 TraesCS7A01G314100 chr2D 94.886 176 7 1 1 174 87419497 87419322 9.210000e-70 274
59 TraesCS7A01G314100 chr2D 87.448 239 22 5 215 447 627136689 627136453 4.280000e-68 268
60 TraesCS7A01G314100 chr5D 94.318 176 8 1 1 174 332431096 332431271 4.280000e-68 268
61 TraesCS7A01G314100 chr4A 95.181 166 8 0 2092 2257 377271606 377271771 1.990000e-66 263
62 TraesCS7A01G314100 chr4A 94.706 170 8 1 1929 2098 377271607 377271775 1.990000e-66 263
63 TraesCS7A01G314100 chr6A 94.578 166 9 0 2093 2258 556981543 556981378 9.280000e-65 257
64 TraesCS7A01G314100 chr6A 95.062 162 8 0 1934 2095 556981539 556981378 3.340000e-64 255
65 TraesCS7A01G314100 chr6A 78.033 305 36 9 172 445 96812724 96813028 2.080000e-36 163
66 TraesCS7A01G314100 chr2B 82.394 284 50 0 1935 2218 197721222 197721505 5.580000e-62 248
67 TraesCS7A01G314100 chr2B 90.361 83 7 1 172 253 71374985 71374903 9.880000e-20 108
68 TraesCS7A01G314100 chr5A 92.814 167 12 0 2093 2259 390364876 390364710 2.600000e-60 243
69 TraesCS7A01G314100 chr5A 92.771 166 12 0 1931 2096 390364875 390364710 9.340000e-60 241
70 TraesCS7A01G314100 chr6B 92.727 165 12 0 2093 2257 20716842 20717006 3.360000e-59 239
71 TraesCS7A01G314100 chr6B 93.210 162 11 0 1933 2094 20716845 20717006 3.360000e-59 239
72 TraesCS7A01G314100 chr5B 91.716 169 14 0 2092 2260 502500375 502500207 4.350000e-58 235
73 TraesCS7A01G314100 chr5B 91.716 169 13 1 1929 2097 502500374 502500207 1.560000e-57 233
74 TraesCS7A01G314100 chr1B 79.935 309 33 11 172 451 478821870 478822178 1.590000e-47 200
75 TraesCS7A01G314100 chr3A 80.000 270 25 14 172 412 87966167 87965898 3.460000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G314100 chr7A 448099067 448101678 2611 False 1167.600000 4824 97.101600 1 2612 5 chr7A.!!$F3 2611
1 TraesCS7A01G314100 chr7A 620842218 620843081 863 True 273.000000 274 91.219000 1 450 2 chr7A.!!$R3 449
2 TraesCS7A01G314100 chr7D 394830615 394831967 1352 False 862.333333 2213 93.462333 530 1891 3 chr7D.!!$F2 1361
3 TraesCS7A01G314100 chr7B 394401939 394404001 2062 False 695.500000 2119 91.784250 442 2612 4 chr7B.!!$F1 2170
4 TraesCS7A01G314100 chr4D 362723418 362724285 867 True 279.500000 291 91.603500 1 449 2 chr4D.!!$R4 448
5 TraesCS7A01G314100 chr4D 468275284 468276116 832 True 268.500000 274 90.763000 1 449 2 chr4D.!!$R5 448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 956 0.108804 ACCGTGAACACCTAGCGATG 60.109 55.0 0.0 0.0 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2416 0.033642 GCTCCTGGCCGGTAAGATAC 59.966 60.0 11.58 0.0 34.27 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.159212 GCATGACACTTTGCATGGCATA 60.159 45.455 6.80 0.00 44.28 3.14
27 28 5.736777 GCATGACACTTTGCATGGCATAATA 60.737 40.000 6.80 0.00 44.28 0.98
31 32 6.321945 TGACACTTTGCATGGCATAATATCTT 59.678 34.615 0.00 0.00 38.76 2.40
146 149 1.207791 GGCCAAGAGGAGGAAGATCA 58.792 55.000 0.00 0.00 36.89 2.92
152 155 4.080695 CCAAGAGGAGGAAGATCAACATGA 60.081 45.833 0.00 0.00 36.89 3.07
181 540 1.101049 CCCGACAAAGGCTGTGTTGT 61.101 55.000 21.11 12.81 38.84 3.32
187 546 3.750373 AAGGCTGTGTTGTCGGCGT 62.750 57.895 6.85 0.00 40.26 5.68
210 569 5.476945 GTGGACAACTATTCATTTTGGAGGT 59.523 40.000 0.00 0.00 0.00 3.85
267 681 1.211457 CTGATGAACTAGGGCTTGGCT 59.789 52.381 0.00 0.00 0.00 4.75
270 684 2.200373 TGAACTAGGGCTTGGCTTTC 57.800 50.000 0.00 0.00 0.00 2.62
271 685 1.423541 TGAACTAGGGCTTGGCTTTCA 59.576 47.619 0.00 0.00 0.00 2.69
274 688 2.239400 ACTAGGGCTTGGCTTTCAAAC 58.761 47.619 0.00 0.00 34.56 2.93
277 691 0.955905 GGGCTTGGCTTTCAAACGTA 59.044 50.000 0.00 0.00 34.56 3.57
412 833 2.409975 GACAGAATCCGGACAAAACGA 58.590 47.619 6.12 0.00 0.00 3.85
415 836 2.546368 CAGAATCCGGACAAAACGAACA 59.454 45.455 6.12 0.00 0.00 3.18
418 839 2.536761 TCCGGACAAAACGAACATCT 57.463 45.000 0.00 0.00 0.00 2.90
424 845 4.495019 CGGACAAAACGAACATCTGTTTGA 60.495 41.667 15.54 0.00 40.94 2.69
437 858 1.593209 GTTTGAGGTCGCGTGGTGA 60.593 57.895 5.77 0.00 0.00 4.02
453 874 2.890311 TGGTGAAGTTGGCCTTATTGTG 59.110 45.455 3.32 0.00 32.03 3.33
475 897 0.982673 CGTAGACCAAGACGAAAGCG 59.017 55.000 0.00 0.00 41.60 4.68
479 901 0.599204 GACCAAGACGAAAGCGGTCA 60.599 55.000 0.00 0.00 44.55 4.02
481 903 0.512952 CCAAGACGAAAGCGGTCAAG 59.487 55.000 0.00 0.00 43.17 3.02
482 904 0.110644 CAAGACGAAAGCGGTCAAGC 60.111 55.000 0.00 0.00 43.17 4.01
511 939 3.241995 GCACGAAGATGAACGTCATTACC 60.242 47.826 0.00 0.00 37.20 2.85
512 940 3.001070 CACGAAGATGAACGTCATTACCG 60.001 47.826 0.00 2.64 37.20 4.02
513 941 3.176708 CGAAGATGAACGTCATTACCGT 58.823 45.455 0.00 0.00 37.20 4.83
514 942 3.001070 CGAAGATGAACGTCATTACCGTG 60.001 47.826 0.00 0.00 37.20 4.94
516 944 4.182693 AGATGAACGTCATTACCGTGAA 57.817 40.909 0.00 0.00 37.20 3.18
517 945 3.924686 AGATGAACGTCATTACCGTGAAC 59.075 43.478 0.00 0.00 37.20 3.18
518 946 3.095102 TGAACGTCATTACCGTGAACA 57.905 42.857 0.00 0.00 38.77 3.18
519 947 2.796031 TGAACGTCATTACCGTGAACAC 59.204 45.455 0.00 0.00 38.77 3.32
520 948 1.787012 ACGTCATTACCGTGAACACC 58.213 50.000 0.00 0.00 37.12 4.16
521 949 1.342174 ACGTCATTACCGTGAACACCT 59.658 47.619 0.00 0.00 37.12 4.00
522 950 2.557924 ACGTCATTACCGTGAACACCTA 59.442 45.455 0.00 0.00 37.12 3.08
523 951 3.176708 CGTCATTACCGTGAACACCTAG 58.823 50.000 0.00 0.00 0.00 3.02
524 952 2.928116 GTCATTACCGTGAACACCTAGC 59.072 50.000 0.00 0.00 0.00 3.42
525 953 1.924524 CATTACCGTGAACACCTAGCG 59.075 52.381 0.00 0.00 0.00 4.26
526 954 1.246649 TTACCGTGAACACCTAGCGA 58.753 50.000 0.00 0.00 0.00 4.93
527 955 1.466856 TACCGTGAACACCTAGCGAT 58.533 50.000 0.00 0.00 0.00 4.58
528 956 0.108804 ACCGTGAACACCTAGCGATG 60.109 55.000 0.00 0.00 0.00 3.84
534 962 4.150980 CGTGAACACCTAGCGATGTTTAAA 59.849 41.667 6.68 0.00 39.13 1.52
541 969 7.826690 ACACCTAGCGATGTTTAAATGAAATT 58.173 30.769 0.00 0.00 38.98 1.82
589 1017 2.298446 TCCAGATGATCTCCGATCTTGC 59.702 50.000 0.00 0.00 0.00 4.01
679 1107 5.010719 TCCTACCGCGAGATATCTCAATTTT 59.989 40.000 27.97 12.91 43.00 1.82
695 1123 4.083537 TCAATTTTCCGACTCATTTCACCG 60.084 41.667 0.00 0.00 0.00 4.94
871 1301 2.942710 TCGTTCCTTCTAGAAACGCAG 58.057 47.619 18.88 2.88 0.00 5.18
872 1302 1.993370 CGTTCCTTCTAGAAACGCAGG 59.007 52.381 13.54 7.95 0.00 4.85
1084 1514 4.337060 CGTCACCGTCGTCCAGCA 62.337 66.667 0.00 0.00 0.00 4.41
1098 1528 4.643387 AGCACCAAGGTGGCGTCC 62.643 66.667 20.02 3.77 42.67 4.79
1618 2048 2.338984 GGTCCAACTGAGCGTCGT 59.661 61.111 0.00 0.00 0.00 4.34
1619 2049 1.733399 GGTCCAACTGAGCGTCGTC 60.733 63.158 0.00 0.00 0.00 4.20
1620 2050 2.081212 GTCCAACTGAGCGTCGTCG 61.081 63.158 0.00 0.00 40.37 5.12
1621 2051 2.050351 CCAACTGAGCGTCGTCGT 60.050 61.111 3.66 0.00 39.49 4.34
1671 2101 0.390735 GCCGAGTGGGTTCGTATGTT 60.391 55.000 0.00 0.00 38.88 2.71
1674 2104 1.127951 CGAGTGGGTTCGTATGTTTGC 59.872 52.381 0.00 0.00 35.91 3.68
1678 2108 1.264557 TGGGTTCGTATGTTTGCGTTG 59.735 47.619 0.00 0.00 32.33 4.10
1787 2217 3.393800 TGCAGTACAGCTCTTCTTGTTC 58.606 45.455 11.81 0.00 34.99 3.18
1834 2264 3.069016 TGTTCTCTTCTGCTACGTTCCAA 59.931 43.478 0.00 0.00 0.00 3.53
1867 2297 2.745821 GGTTTTAGGGCAACTCTAACCG 59.254 50.000 0.00 0.00 34.84 4.44
1869 2299 3.323751 TTTAGGGCAACTCTAACCGAC 57.676 47.619 0.00 0.00 31.71 4.79
1872 2302 1.078637 GGCAACTCTAACCGACCCC 60.079 63.158 0.00 0.00 0.00 4.95
1897 2328 5.456921 AAAAATAAGGAGGATCTGGCAGA 57.543 39.130 21.19 21.19 33.73 4.26
1898 2329 4.703379 AAATAAGGAGGATCTGGCAGAG 57.297 45.455 23.24 0.00 33.73 3.35
1899 2330 2.856760 TAAGGAGGATCTGGCAGAGT 57.143 50.000 23.24 9.87 33.73 3.24
1900 2331 2.856760 AAGGAGGATCTGGCAGAGTA 57.143 50.000 23.24 0.00 33.73 2.59
1901 2332 2.856760 AGGAGGATCTGGCAGAGTAA 57.143 50.000 23.24 0.00 33.73 2.24
1902 2333 3.121929 AGGAGGATCTGGCAGAGTAAA 57.878 47.619 23.24 0.00 33.73 2.01
1903 2334 3.454858 AGGAGGATCTGGCAGAGTAAAA 58.545 45.455 23.24 0.00 33.73 1.52
1904 2335 3.198853 AGGAGGATCTGGCAGAGTAAAAC 59.801 47.826 23.24 10.95 33.73 2.43
1905 2336 3.536570 GAGGATCTGGCAGAGTAAAACC 58.463 50.000 23.24 16.60 0.00 3.27
1906 2337 3.185455 AGGATCTGGCAGAGTAAAACCT 58.815 45.455 23.24 18.29 0.00 3.50
1907 2338 3.589288 AGGATCTGGCAGAGTAAAACCTT 59.411 43.478 23.24 1.91 0.00 3.50
1908 2339 4.783227 AGGATCTGGCAGAGTAAAACCTTA 59.217 41.667 23.24 0.00 0.00 2.69
1909 2340 5.104735 AGGATCTGGCAGAGTAAAACCTTAG 60.105 44.000 23.24 0.00 0.00 2.18
1910 2341 3.939066 TCTGGCAGAGTAAAACCTTAGC 58.061 45.455 14.43 0.00 0.00 3.09
1911 2342 3.326588 TCTGGCAGAGTAAAACCTTAGCA 59.673 43.478 14.43 0.00 0.00 3.49
1912 2343 3.674997 TGGCAGAGTAAAACCTTAGCAG 58.325 45.455 0.00 0.00 0.00 4.24
1913 2344 3.326588 TGGCAGAGTAAAACCTTAGCAGA 59.673 43.478 0.00 0.00 0.00 4.26
1914 2345 3.935828 GGCAGAGTAAAACCTTAGCAGAG 59.064 47.826 0.00 0.00 0.00 3.35
1915 2346 4.563786 GGCAGAGTAAAACCTTAGCAGAGT 60.564 45.833 0.00 0.00 0.00 3.24
1916 2347 5.337330 GGCAGAGTAAAACCTTAGCAGAGTA 60.337 44.000 0.00 0.00 0.00 2.59
1917 2348 6.342111 GCAGAGTAAAACCTTAGCAGAGTAT 58.658 40.000 0.00 0.00 0.00 2.12
1918 2349 6.819146 GCAGAGTAAAACCTTAGCAGAGTATT 59.181 38.462 0.00 0.00 0.00 1.89
1919 2350 7.334671 GCAGAGTAAAACCTTAGCAGAGTATTT 59.665 37.037 0.00 0.00 0.00 1.40
1920 2351 9.220767 CAGAGTAAAACCTTAGCAGAGTATTTT 57.779 33.333 0.00 0.00 0.00 1.82
1921 2352 9.794719 AGAGTAAAACCTTAGCAGAGTATTTTT 57.205 29.630 0.00 0.00 0.00 1.94
1926 2357 8.563123 AAACCTTAGCAGAGTATTTTTACTCC 57.437 34.615 9.03 0.00 45.66 3.85
1927 2358 7.253905 ACCTTAGCAGAGTATTTTTACTCCA 57.746 36.000 9.03 0.00 45.66 3.86
1928 2359 7.104290 ACCTTAGCAGAGTATTTTTACTCCAC 58.896 38.462 9.03 3.19 45.66 4.02
1929 2360 7.038231 ACCTTAGCAGAGTATTTTTACTCCACT 60.038 37.037 9.03 9.16 45.66 4.00
1930 2361 7.824779 CCTTAGCAGAGTATTTTTACTCCACTT 59.175 37.037 9.03 0.00 45.66 3.16
1931 2362 9.871238 CTTAGCAGAGTATTTTTACTCCACTTA 57.129 33.333 9.03 2.20 45.66 2.24
1933 2364 8.779354 AGCAGAGTATTTTTACTCCACTTAAG 57.221 34.615 0.00 0.00 45.66 1.85
1934 2365 7.824779 AGCAGAGTATTTTTACTCCACTTAAGG 59.175 37.037 7.53 0.00 45.66 2.69
1935 2366 7.414208 GCAGAGTATTTTTACTCCACTTAAGGC 60.414 40.741 7.53 0.00 45.66 4.35
1936 2367 7.065923 CAGAGTATTTTTACTCCACTTAAGGCC 59.934 40.741 7.53 0.00 45.66 5.19
1937 2368 5.878669 AGTATTTTTACTCCACTTAAGGCCG 59.121 40.000 7.53 0.00 0.00 6.13
1938 2369 2.103537 TTTACTCCACTTAAGGCCGC 57.896 50.000 7.53 0.00 0.00 6.53
1939 2370 0.108520 TTACTCCACTTAAGGCCGCG 60.109 55.000 7.53 0.00 0.00 6.46
1940 2371 2.567564 TACTCCACTTAAGGCCGCGC 62.568 60.000 7.53 0.00 0.00 6.86
1941 2372 3.665675 CTCCACTTAAGGCCGCGCT 62.666 63.158 5.56 0.00 0.00 5.92
1942 2373 2.746277 CCACTTAAGGCCGCGCTT 60.746 61.111 5.56 1.72 0.00 4.68
1943 2374 2.480555 CACTTAAGGCCGCGCTTG 59.519 61.111 5.56 0.00 0.00 4.01
1944 2375 2.746277 ACTTAAGGCCGCGCTTGG 60.746 61.111 5.56 0.18 0.00 3.61
1945 2376 2.435938 CTTAAGGCCGCGCTTGGA 60.436 61.111 5.56 0.00 0.00 3.53
1946 2377 2.032834 TTAAGGCCGCGCTTGGAA 59.967 55.556 5.56 0.00 0.00 3.53
1947 2378 1.376609 CTTAAGGCCGCGCTTGGAAT 61.377 55.000 5.56 0.00 0.00 3.01
1948 2379 1.373590 TTAAGGCCGCGCTTGGAATC 61.374 55.000 5.56 0.00 0.00 2.52
1952 2383 3.864686 CCGCGCTTGGAATCGGTG 61.865 66.667 5.56 0.00 37.33 4.94
1953 2384 3.118454 CGCGCTTGGAATCGGTGT 61.118 61.111 5.56 0.00 0.00 4.16
1954 2385 1.807981 CGCGCTTGGAATCGGTGTA 60.808 57.895 5.56 0.00 0.00 2.90
1955 2386 1.355796 CGCGCTTGGAATCGGTGTAA 61.356 55.000 5.56 0.00 0.00 2.41
1956 2387 0.800012 GCGCTTGGAATCGGTGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
1957 2388 1.465187 GCGCTTGGAATCGGTGTAAAC 60.465 52.381 0.00 0.00 0.00 2.01
1958 2389 1.801771 CGCTTGGAATCGGTGTAAACA 59.198 47.619 0.00 0.00 0.00 2.83
1959 2390 2.418628 CGCTTGGAATCGGTGTAAACAT 59.581 45.455 0.00 0.00 0.00 2.71
1960 2391 3.619483 CGCTTGGAATCGGTGTAAACATA 59.381 43.478 0.00 0.00 0.00 2.29
1961 2392 4.272504 CGCTTGGAATCGGTGTAAACATAT 59.727 41.667 0.00 0.00 0.00 1.78
1962 2393 5.464057 CGCTTGGAATCGGTGTAAACATATA 59.536 40.000 0.00 0.00 0.00 0.86
1970 2401 9.304731 GAATCGGTGTAAACATATACAAGTGTA 57.695 33.333 0.00 0.00 37.52 2.90
1984 2415 9.895138 ATATACAAGTGTATTTTTCTTACGGGT 57.105 29.630 9.15 0.00 41.18 5.28
1985 2416 6.308371 ACAAGTGTATTTTTCTTACGGGTG 57.692 37.500 0.00 0.00 0.00 4.61
1986 2417 5.824097 ACAAGTGTATTTTTCTTACGGGTGT 59.176 36.000 0.00 0.00 0.00 4.16
1987 2418 6.991531 ACAAGTGTATTTTTCTTACGGGTGTA 59.008 34.615 0.00 0.00 0.00 2.90
1988 2419 7.662669 ACAAGTGTATTTTTCTTACGGGTGTAT 59.337 33.333 0.00 0.00 0.00 2.29
1989 2420 7.838771 AGTGTATTTTTCTTACGGGTGTATC 57.161 36.000 0.00 0.00 0.00 2.24
1990 2421 7.618137 AGTGTATTTTTCTTACGGGTGTATCT 58.382 34.615 0.00 0.00 0.00 1.98
1991 2422 8.098912 AGTGTATTTTTCTTACGGGTGTATCTT 58.901 33.333 0.00 0.00 0.00 2.40
1992 2423 9.369904 GTGTATTTTTCTTACGGGTGTATCTTA 57.630 33.333 0.00 0.00 0.00 2.10
1993 2424 9.369904 TGTATTTTTCTTACGGGTGTATCTTAC 57.630 33.333 0.00 0.00 0.00 2.34
1994 2425 7.854557 ATTTTTCTTACGGGTGTATCTTACC 57.145 36.000 0.00 0.00 37.48 2.85
1997 2428 4.744316 CGGGTGTATCTTACCGGC 57.256 61.111 0.00 0.00 42.48 6.13
1998 2429 1.068585 CGGGTGTATCTTACCGGCC 59.931 63.158 0.00 0.00 42.48 6.13
1999 2430 1.678598 CGGGTGTATCTTACCGGCCA 61.679 60.000 0.00 0.00 42.48 5.36
2000 2431 0.106149 GGGTGTATCTTACCGGCCAG 59.894 60.000 0.00 0.00 39.14 4.85
2002 2433 1.117150 GTGTATCTTACCGGCCAGGA 58.883 55.000 18.74 0.00 45.00 3.86
2003 2434 1.068741 GTGTATCTTACCGGCCAGGAG 59.931 57.143 18.74 8.01 45.00 3.69
2004 2435 0.033642 GTATCTTACCGGCCAGGAGC 59.966 60.000 18.74 0.00 45.00 4.70
2005 2436 1.461091 TATCTTACCGGCCAGGAGCG 61.461 60.000 18.74 7.32 45.17 5.03
2006 2437 3.458163 CTTACCGGCCAGGAGCGA 61.458 66.667 18.74 0.72 45.17 4.93
2007 2438 2.762459 TTACCGGCCAGGAGCGAT 60.762 61.111 18.74 0.62 45.17 4.58
2008 2439 2.311688 CTTACCGGCCAGGAGCGATT 62.312 60.000 18.74 0.00 45.17 3.34
2009 2440 1.906105 TTACCGGCCAGGAGCGATTT 61.906 55.000 18.74 0.00 45.17 2.17
2010 2441 2.587322 TACCGGCCAGGAGCGATTTG 62.587 60.000 18.74 0.00 45.17 2.32
2011 2442 3.880846 CGGCCAGGAGCGATTTGC 61.881 66.667 2.24 0.00 45.17 3.68
2020 2451 3.693411 GCGATTTGCAGGGGGAAA 58.307 55.556 0.00 0.00 45.45 3.13
2021 2452 2.201927 GCGATTTGCAGGGGGAAAT 58.798 52.632 0.00 0.00 46.17 2.17
2022 2453 0.179103 GCGATTTGCAGGGGGAAATG 60.179 55.000 0.00 0.00 43.93 2.32
2023 2454 1.473258 CGATTTGCAGGGGGAAATGA 58.527 50.000 0.00 0.00 43.93 2.57
2024 2455 1.824230 CGATTTGCAGGGGGAAATGAA 59.176 47.619 0.00 0.00 43.93 2.57
2025 2456 2.233431 CGATTTGCAGGGGGAAATGAAA 59.767 45.455 0.00 0.00 43.93 2.69
2026 2457 3.306641 CGATTTGCAGGGGGAAATGAAAA 60.307 43.478 0.00 0.00 43.93 2.29
2027 2458 3.483808 TTTGCAGGGGGAAATGAAAAC 57.516 42.857 0.00 0.00 28.60 2.43
2028 2459 0.965439 TGCAGGGGGAAATGAAAACG 59.035 50.000 0.00 0.00 0.00 3.60
2029 2460 1.253100 GCAGGGGGAAATGAAAACGA 58.747 50.000 0.00 0.00 0.00 3.85
2030 2461 1.067846 GCAGGGGGAAATGAAAACGAC 60.068 52.381 0.00 0.00 0.00 4.34
2031 2462 1.199097 CAGGGGGAAATGAAAACGACG 59.801 52.381 0.00 0.00 0.00 5.12
2032 2463 0.524414 GGGGGAAATGAAAACGACGG 59.476 55.000 0.00 0.00 0.00 4.79
2033 2464 1.525941 GGGGAAATGAAAACGACGGA 58.474 50.000 0.00 0.00 0.00 4.69
2034 2465 2.089201 GGGGAAATGAAAACGACGGAT 58.911 47.619 0.00 0.00 0.00 4.18
2035 2466 2.159435 GGGGAAATGAAAACGACGGATG 60.159 50.000 0.00 0.00 0.00 3.51
2036 2467 2.159435 GGGAAATGAAAACGACGGATGG 60.159 50.000 0.00 0.00 0.00 3.51
2037 2468 2.486592 GGAAATGAAAACGACGGATGGT 59.513 45.455 0.00 0.00 0.00 3.55
2038 2469 3.488489 GAAATGAAAACGACGGATGGTG 58.512 45.455 0.00 0.00 0.00 4.17
2039 2470 1.448985 ATGAAAACGACGGATGGTGG 58.551 50.000 0.00 0.00 0.00 4.61
2040 2471 1.231958 TGAAAACGACGGATGGTGGC 61.232 55.000 0.00 0.00 0.00 5.01
2041 2472 1.918868 GAAAACGACGGATGGTGGCC 61.919 60.000 0.00 0.00 0.00 5.36
2042 2473 2.406002 AAAACGACGGATGGTGGCCT 62.406 55.000 3.32 0.00 0.00 5.19
2043 2474 3.605749 AACGACGGATGGTGGCCTG 62.606 63.158 3.32 0.00 0.00 4.85
2044 2475 4.082523 CGACGGATGGTGGCCTGT 62.083 66.667 3.32 0.00 0.00 4.00
2045 2476 2.717044 CGACGGATGGTGGCCTGTA 61.717 63.158 3.32 0.00 0.00 2.74
2046 2477 1.600107 GACGGATGGTGGCCTGTAA 59.400 57.895 3.32 0.00 0.00 2.41
2047 2478 0.743345 GACGGATGGTGGCCTGTAAC 60.743 60.000 3.32 0.00 0.00 2.50
2048 2479 1.198759 ACGGATGGTGGCCTGTAACT 61.199 55.000 3.32 0.00 0.00 2.24
2049 2480 0.035439 CGGATGGTGGCCTGTAACTT 60.035 55.000 3.32 0.00 0.00 2.66
2050 2481 1.613255 CGGATGGTGGCCTGTAACTTT 60.613 52.381 3.32 0.00 0.00 2.66
2051 2482 2.525368 GGATGGTGGCCTGTAACTTTT 58.475 47.619 3.32 0.00 0.00 2.27
2052 2483 3.692690 GGATGGTGGCCTGTAACTTTTA 58.307 45.455 3.32 0.00 0.00 1.52
2053 2484 3.442625 GGATGGTGGCCTGTAACTTTTAC 59.557 47.826 3.32 0.00 0.00 2.01
2054 2485 3.579534 TGGTGGCCTGTAACTTTTACA 57.420 42.857 3.32 0.00 0.00 2.41
2055 2486 3.899726 TGGTGGCCTGTAACTTTTACAA 58.100 40.909 3.32 0.00 0.00 2.41
2056 2487 3.886505 TGGTGGCCTGTAACTTTTACAAG 59.113 43.478 3.32 0.00 35.92 3.16
2057 2488 3.305131 GGTGGCCTGTAACTTTTACAAGC 60.305 47.826 3.32 10.06 34.94 4.01
2058 2489 2.550606 TGGCCTGTAACTTTTACAAGCG 59.449 45.455 3.32 0.56 36.14 4.68
2059 2490 2.551032 GGCCTGTAACTTTTACAAGCGT 59.449 45.455 11.61 0.00 36.14 5.07
2060 2491 3.747529 GGCCTGTAACTTTTACAAGCGTA 59.252 43.478 11.61 0.00 36.14 4.42
2061 2492 4.393990 GGCCTGTAACTTTTACAAGCGTAT 59.606 41.667 11.61 0.00 36.14 3.06
2062 2493 5.106436 GGCCTGTAACTTTTACAAGCGTATT 60.106 40.000 11.61 0.00 36.14 1.89
2063 2494 6.019762 GCCTGTAACTTTTACAAGCGTATTC 58.980 40.000 4.38 0.00 32.57 1.75
2064 2495 6.347888 GCCTGTAACTTTTACAAGCGTATTCA 60.348 38.462 4.38 0.00 32.57 2.57
2065 2496 7.577979 CCTGTAACTTTTACAAGCGTATTCAA 58.422 34.615 0.74 0.00 32.57 2.69
2066 2497 8.071368 CCTGTAACTTTTACAAGCGTATTCAAA 58.929 33.333 0.74 0.00 32.57 2.69
2067 2498 8.996988 TGTAACTTTTACAAGCGTATTCAAAG 57.003 30.769 0.00 0.00 32.66 2.77
2068 2499 8.614346 TGTAACTTTTACAAGCGTATTCAAAGT 58.386 29.630 0.00 0.00 37.60 2.66
2071 2502 8.597662 ACTTTTACAAGCGTATTCAAAGTAGA 57.402 30.769 0.00 0.00 35.71 2.59
2072 2503 9.048446 ACTTTTACAAGCGTATTCAAAGTAGAA 57.952 29.630 0.00 0.00 35.71 2.10
2073 2504 9.872757 CTTTTACAAGCGTATTCAAAGTAGAAA 57.127 29.630 0.00 0.00 0.00 2.52
2074 2505 9.654417 TTTTACAAGCGTATTCAAAGTAGAAAC 57.346 29.630 0.00 0.00 0.00 2.78
2075 2506 5.912528 ACAAGCGTATTCAAAGTAGAAACG 58.087 37.500 0.00 0.00 36.28 3.60
2076 2507 5.693104 ACAAGCGTATTCAAAGTAGAAACGA 59.307 36.000 0.00 0.00 35.78 3.85
2077 2508 5.758570 AGCGTATTCAAAGTAGAAACGAC 57.241 39.130 0.00 0.00 35.78 4.34
2078 2509 5.224888 AGCGTATTCAAAGTAGAAACGACA 58.775 37.500 0.00 0.00 35.78 4.35
2079 2510 5.867716 AGCGTATTCAAAGTAGAAACGACAT 59.132 36.000 0.00 0.00 35.78 3.06
2080 2511 6.367969 AGCGTATTCAAAGTAGAAACGACATT 59.632 34.615 0.00 0.00 35.78 2.71
2081 2512 6.677411 GCGTATTCAAAGTAGAAACGACATTC 59.323 38.462 0.00 0.00 35.78 2.67
2082 2513 7.171434 CGTATTCAAAGTAGAAACGACATTCC 58.829 38.462 0.00 0.00 35.78 3.01
2083 2514 7.148705 CGTATTCAAAGTAGAAACGACATTCCA 60.149 37.037 0.00 0.00 35.78 3.53
2084 2515 6.928979 TTCAAAGTAGAAACGACATTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
2085 2516 6.928979 TCAAAGTAGAAACGACATTCCAAA 57.071 33.333 0.00 0.00 0.00 3.28
2086 2517 6.721321 TCAAAGTAGAAACGACATTCCAAAC 58.279 36.000 0.00 0.00 0.00 2.93
2087 2518 6.316640 TCAAAGTAGAAACGACATTCCAAACA 59.683 34.615 0.00 0.00 0.00 2.83
2088 2519 5.924475 AGTAGAAACGACATTCCAAACAG 57.076 39.130 0.00 0.00 0.00 3.16
2089 2520 4.755123 AGTAGAAACGACATTCCAAACAGG 59.245 41.667 0.00 0.00 39.47 4.00
2090 2521 2.884639 AGAAACGACATTCCAAACAGGG 59.115 45.455 0.00 0.00 38.24 4.45
2091 2522 0.958822 AACGACATTCCAAACAGGGC 59.041 50.000 0.00 0.00 38.24 5.19
2092 2523 0.893727 ACGACATTCCAAACAGGGCC 60.894 55.000 0.00 0.00 38.24 5.80
2093 2524 0.609131 CGACATTCCAAACAGGGCCT 60.609 55.000 0.00 0.00 38.24 5.19
2094 2525 1.339631 CGACATTCCAAACAGGGCCTA 60.340 52.381 5.28 0.00 38.24 3.93
2095 2526 2.802719 GACATTCCAAACAGGGCCTAA 58.197 47.619 5.28 0.00 38.24 2.69
2096 2527 2.755103 GACATTCCAAACAGGGCCTAAG 59.245 50.000 5.28 0.00 38.24 2.18
2097 2528 2.102578 CATTCCAAACAGGGCCTAAGG 58.897 52.381 5.28 6.03 38.24 2.69
2108 2539 4.467084 CCTAAGGCCGCGCTTGGA 62.467 66.667 5.56 0.00 0.00 3.53
2109 2540 2.435938 CTAAGGCCGCGCTTGGAA 60.436 61.111 5.56 0.00 0.00 3.53
2110 2541 1.819632 CTAAGGCCGCGCTTGGAAT 60.820 57.895 5.56 0.00 0.00 3.01
2111 2542 1.776034 CTAAGGCCGCGCTTGGAATC 61.776 60.000 5.56 0.00 0.00 2.52
2115 2546 3.864686 CCGCGCTTGGAATCGGTG 61.865 66.667 5.56 0.00 37.33 4.94
2116 2547 3.118454 CGCGCTTGGAATCGGTGT 61.118 61.111 5.56 0.00 0.00 4.16
2117 2548 1.807981 CGCGCTTGGAATCGGTGTA 60.808 57.895 5.56 0.00 0.00 2.90
2118 2549 1.355796 CGCGCTTGGAATCGGTGTAA 61.356 55.000 5.56 0.00 0.00 2.41
2119 2550 0.800012 GCGCTTGGAATCGGTGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
2120 2551 1.465187 GCGCTTGGAATCGGTGTAAAC 60.465 52.381 0.00 0.00 0.00 2.01
2121 2552 1.801771 CGCTTGGAATCGGTGTAAACA 59.198 47.619 0.00 0.00 0.00 2.83
2122 2553 2.418628 CGCTTGGAATCGGTGTAAACAT 59.581 45.455 0.00 0.00 0.00 2.71
2123 2554 3.619483 CGCTTGGAATCGGTGTAAACATA 59.381 43.478 0.00 0.00 0.00 2.29
2124 2555 4.272504 CGCTTGGAATCGGTGTAAACATAT 59.727 41.667 0.00 0.00 0.00 1.78
2125 2556 5.464057 CGCTTGGAATCGGTGTAAACATATA 59.536 40.000 0.00 0.00 0.00 0.86
2126 2557 6.563381 CGCTTGGAATCGGTGTAAACATATAC 60.563 42.308 0.00 0.00 0.00 1.47
2127 2558 6.259167 GCTTGGAATCGGTGTAAACATATACA 59.741 38.462 0.00 0.00 33.52 2.29
2128 2559 7.201661 GCTTGGAATCGGTGTAAACATATACAA 60.202 37.037 0.00 0.00 37.52 2.41
2129 2560 7.780008 TGGAATCGGTGTAAACATATACAAG 57.220 36.000 0.00 0.00 37.52 3.16
2130 2561 7.332557 TGGAATCGGTGTAAACATATACAAGT 58.667 34.615 0.00 0.00 37.52 3.16
2131 2562 7.279090 TGGAATCGGTGTAAACATATACAAGTG 59.721 37.037 0.00 0.00 37.52 3.16
2132 2563 7.279313 GGAATCGGTGTAAACATATACAAGTGT 59.721 37.037 0.00 0.00 37.52 3.55
2133 2564 9.304731 GAATCGGTGTAAACATATACAAGTGTA 57.695 33.333 0.00 0.00 37.52 2.90
2134 2565 9.826574 AATCGGTGTAAACATATACAAGTGTAT 57.173 29.630 8.88 8.88 43.15 2.29
2135 2566 9.826574 ATCGGTGTAAACATATACAAGTGTATT 57.173 29.630 9.15 0.00 41.18 1.89
2136 2567 9.656040 TCGGTGTAAACATATACAAGTGTATTT 57.344 29.630 9.15 0.00 41.18 1.40
2147 2578 9.895138 ATATACAAGTGTATTTTTCTTACGGGT 57.105 29.630 9.15 0.00 41.18 5.28
2148 2579 6.308371 ACAAGTGTATTTTTCTTACGGGTG 57.692 37.500 0.00 0.00 0.00 4.61
2149 2580 5.824097 ACAAGTGTATTTTTCTTACGGGTGT 59.176 36.000 0.00 0.00 0.00 4.16
2150 2581 6.991531 ACAAGTGTATTTTTCTTACGGGTGTA 59.008 34.615 0.00 0.00 0.00 2.90
2151 2582 7.662669 ACAAGTGTATTTTTCTTACGGGTGTAT 59.337 33.333 0.00 0.00 0.00 2.29
2152 2583 7.838771 AGTGTATTTTTCTTACGGGTGTATC 57.161 36.000 0.00 0.00 0.00 2.24
2153 2584 7.618137 AGTGTATTTTTCTTACGGGTGTATCT 58.382 34.615 0.00 0.00 0.00 1.98
2154 2585 8.098912 AGTGTATTTTTCTTACGGGTGTATCTT 58.901 33.333 0.00 0.00 0.00 2.40
2155 2586 9.369904 GTGTATTTTTCTTACGGGTGTATCTTA 57.630 33.333 0.00 0.00 0.00 2.10
2156 2587 9.369904 TGTATTTTTCTTACGGGTGTATCTTAC 57.630 33.333 0.00 0.00 0.00 2.34
2157 2588 7.854557 ATTTTTCTTACGGGTGTATCTTACC 57.145 36.000 0.00 0.00 37.48 2.85
2160 2591 4.744316 CGGGTGTATCTTACCGGC 57.256 61.111 0.00 0.00 42.48 6.13
2161 2592 1.068585 CGGGTGTATCTTACCGGCC 59.931 63.158 0.00 0.00 42.48 6.13
2162 2593 1.678598 CGGGTGTATCTTACCGGCCA 61.679 60.000 0.00 0.00 42.48 5.36
2163 2594 0.106149 GGGTGTATCTTACCGGCCAG 59.894 60.000 0.00 0.00 39.14 4.85
2165 2596 1.117150 GTGTATCTTACCGGCCAGGA 58.883 55.000 18.74 0.00 45.00 3.86
2166 2597 1.068741 GTGTATCTTACCGGCCAGGAG 59.931 57.143 18.74 8.01 45.00 3.69
2167 2598 0.033642 GTATCTTACCGGCCAGGAGC 59.966 60.000 18.74 0.00 45.00 4.70
2168 2599 1.461091 TATCTTACCGGCCAGGAGCG 61.461 60.000 18.74 7.32 45.17 5.03
2169 2600 3.458163 CTTACCGGCCAGGAGCGA 61.458 66.667 18.74 0.72 45.17 4.93
2170 2601 2.762459 TTACCGGCCAGGAGCGAT 60.762 61.111 18.74 0.62 45.17 4.58
2171 2602 2.311688 CTTACCGGCCAGGAGCGATT 62.312 60.000 18.74 0.00 45.17 3.34
2172 2603 1.906105 TTACCGGCCAGGAGCGATTT 61.906 55.000 18.74 0.00 45.17 2.17
2173 2604 2.587322 TACCGGCCAGGAGCGATTTG 62.587 60.000 18.74 0.00 45.17 2.32
2174 2605 3.880846 CGGCCAGGAGCGATTTGC 61.881 66.667 2.24 0.00 45.17 3.68
2183 2614 3.693411 GCGATTTGCAGGGGGAAA 58.307 55.556 0.00 0.00 45.45 3.13
2184 2615 2.201927 GCGATTTGCAGGGGGAAAT 58.798 52.632 0.00 0.00 46.17 2.17
2185 2616 0.179103 GCGATTTGCAGGGGGAAATG 60.179 55.000 0.00 0.00 43.93 2.32
2186 2617 1.473258 CGATTTGCAGGGGGAAATGA 58.527 50.000 0.00 0.00 43.93 2.57
2187 2618 1.824230 CGATTTGCAGGGGGAAATGAA 59.176 47.619 0.00 0.00 43.93 2.57
2188 2619 2.233431 CGATTTGCAGGGGGAAATGAAA 59.767 45.455 0.00 0.00 43.93 2.69
2189 2620 3.306641 CGATTTGCAGGGGGAAATGAAAA 60.307 43.478 0.00 0.00 43.93 2.29
2190 2621 3.483808 TTTGCAGGGGGAAATGAAAAC 57.516 42.857 0.00 0.00 28.60 2.43
2191 2622 0.965439 TGCAGGGGGAAATGAAAACG 59.035 50.000 0.00 0.00 0.00 3.60
2192 2623 1.253100 GCAGGGGGAAATGAAAACGA 58.747 50.000 0.00 0.00 0.00 3.85
2193 2624 1.067846 GCAGGGGGAAATGAAAACGAC 60.068 52.381 0.00 0.00 0.00 4.34
2194 2625 1.199097 CAGGGGGAAATGAAAACGACG 59.801 52.381 0.00 0.00 0.00 5.12
2195 2626 0.524414 GGGGGAAATGAAAACGACGG 59.476 55.000 0.00 0.00 0.00 4.79
2196 2627 1.525941 GGGGAAATGAAAACGACGGA 58.474 50.000 0.00 0.00 0.00 4.69
2197 2628 2.089201 GGGGAAATGAAAACGACGGAT 58.911 47.619 0.00 0.00 0.00 4.18
2198 2629 2.159435 GGGGAAATGAAAACGACGGATG 60.159 50.000 0.00 0.00 0.00 3.51
2199 2630 2.159435 GGGAAATGAAAACGACGGATGG 60.159 50.000 0.00 0.00 0.00 3.51
2200 2631 2.486592 GGAAATGAAAACGACGGATGGT 59.513 45.455 0.00 0.00 0.00 3.55
2201 2632 3.488489 GAAATGAAAACGACGGATGGTG 58.512 45.455 0.00 0.00 0.00 4.17
2202 2633 1.448985 ATGAAAACGACGGATGGTGG 58.551 50.000 0.00 0.00 0.00 4.61
2203 2634 1.231958 TGAAAACGACGGATGGTGGC 61.232 55.000 0.00 0.00 0.00 5.01
2204 2635 1.918868 GAAAACGACGGATGGTGGCC 61.919 60.000 0.00 0.00 0.00 5.36
2205 2636 2.406002 AAAACGACGGATGGTGGCCT 62.406 55.000 3.32 0.00 0.00 5.19
2206 2637 3.605749 AACGACGGATGGTGGCCTG 62.606 63.158 3.32 0.00 0.00 4.85
2207 2638 4.082523 CGACGGATGGTGGCCTGT 62.083 66.667 3.32 0.00 0.00 4.00
2208 2639 2.717044 CGACGGATGGTGGCCTGTA 61.717 63.158 3.32 0.00 0.00 2.74
2209 2640 1.600107 GACGGATGGTGGCCTGTAA 59.400 57.895 3.32 0.00 0.00 2.41
2210 2641 0.743345 GACGGATGGTGGCCTGTAAC 60.743 60.000 3.32 0.00 0.00 2.50
2211 2642 1.198759 ACGGATGGTGGCCTGTAACT 61.199 55.000 3.32 0.00 0.00 2.24
2212 2643 0.035439 CGGATGGTGGCCTGTAACTT 60.035 55.000 3.32 0.00 0.00 2.66
2213 2644 1.613255 CGGATGGTGGCCTGTAACTTT 60.613 52.381 3.32 0.00 0.00 2.66
2214 2645 2.525368 GGATGGTGGCCTGTAACTTTT 58.475 47.619 3.32 0.00 0.00 2.27
2215 2646 3.692690 GGATGGTGGCCTGTAACTTTTA 58.307 45.455 3.32 0.00 0.00 1.52
2216 2647 3.442625 GGATGGTGGCCTGTAACTTTTAC 59.557 47.826 3.32 0.00 0.00 2.01
2217 2648 3.579534 TGGTGGCCTGTAACTTTTACA 57.420 42.857 3.32 0.00 0.00 2.41
2218 2649 3.899726 TGGTGGCCTGTAACTTTTACAA 58.100 40.909 3.32 0.00 0.00 2.41
2219 2650 3.886505 TGGTGGCCTGTAACTTTTACAAG 59.113 43.478 3.32 0.00 35.92 3.16
2220 2651 3.305131 GGTGGCCTGTAACTTTTACAAGC 60.305 47.826 3.32 10.06 34.94 4.01
2221 2652 2.550606 TGGCCTGTAACTTTTACAAGCG 59.449 45.455 3.32 0.56 36.14 4.68
2222 2653 2.551032 GGCCTGTAACTTTTACAAGCGT 59.449 45.455 11.61 0.00 36.14 5.07
2223 2654 3.747529 GGCCTGTAACTTTTACAAGCGTA 59.252 43.478 11.61 0.00 36.14 4.42
2224 2655 4.393990 GGCCTGTAACTTTTACAAGCGTAT 59.606 41.667 11.61 0.00 36.14 3.06
2225 2656 5.106436 GGCCTGTAACTTTTACAAGCGTATT 60.106 40.000 11.61 0.00 36.14 1.89
2226 2657 6.019762 GCCTGTAACTTTTACAAGCGTATTC 58.980 40.000 4.38 0.00 32.57 1.75
2227 2658 6.347888 GCCTGTAACTTTTACAAGCGTATTCA 60.348 38.462 4.38 0.00 32.57 2.57
2228 2659 7.577979 CCTGTAACTTTTACAAGCGTATTCAA 58.422 34.615 0.74 0.00 32.57 2.69
2229 2660 8.071368 CCTGTAACTTTTACAAGCGTATTCAAA 58.929 33.333 0.74 0.00 32.57 2.69
2230 2661 8.996988 TGTAACTTTTACAAGCGTATTCAAAG 57.003 30.769 0.00 0.00 32.66 2.77
2231 2662 8.614346 TGTAACTTTTACAAGCGTATTCAAAGT 58.386 29.630 0.00 0.00 37.60 2.66
2234 2665 8.597662 ACTTTTACAAGCGTATTCAAAGTAGA 57.402 30.769 0.00 0.00 35.71 2.59
2235 2666 9.048446 ACTTTTACAAGCGTATTCAAAGTAGAA 57.952 29.630 0.00 0.00 35.71 2.10
2236 2667 9.872757 CTTTTACAAGCGTATTCAAAGTAGAAA 57.127 29.630 0.00 0.00 0.00 2.52
2237 2668 9.654417 TTTTACAAGCGTATTCAAAGTAGAAAC 57.346 29.630 0.00 0.00 0.00 2.78
2238 2669 5.912528 ACAAGCGTATTCAAAGTAGAAACG 58.087 37.500 0.00 0.00 36.28 3.60
2239 2670 5.693104 ACAAGCGTATTCAAAGTAGAAACGA 59.307 36.000 0.00 0.00 35.78 3.85
2240 2671 5.758570 AGCGTATTCAAAGTAGAAACGAC 57.241 39.130 0.00 0.00 35.78 4.34
2241 2672 5.224888 AGCGTATTCAAAGTAGAAACGACA 58.775 37.500 0.00 0.00 35.78 4.35
2242 2673 5.867716 AGCGTATTCAAAGTAGAAACGACAT 59.132 36.000 0.00 0.00 35.78 3.06
2243 2674 6.367969 AGCGTATTCAAAGTAGAAACGACATT 59.632 34.615 0.00 0.00 35.78 2.71
2244 2675 6.677411 GCGTATTCAAAGTAGAAACGACATTC 59.323 38.462 0.00 0.00 35.78 2.67
2245 2676 7.171434 CGTATTCAAAGTAGAAACGACATTCC 58.829 38.462 0.00 0.00 35.78 3.01
2246 2677 7.148705 CGTATTCAAAGTAGAAACGACATTCCA 60.149 37.037 0.00 0.00 35.78 3.53
2247 2678 6.928979 TTCAAAGTAGAAACGACATTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
2248 2679 6.928979 TCAAAGTAGAAACGACATTCCAAA 57.071 33.333 0.00 0.00 0.00 3.28
2249 2680 6.721321 TCAAAGTAGAAACGACATTCCAAAC 58.279 36.000 0.00 0.00 0.00 2.93
2250 2681 6.316640 TCAAAGTAGAAACGACATTCCAAACA 59.683 34.615 0.00 0.00 0.00 2.83
2251 2682 5.924475 AGTAGAAACGACATTCCAAACAG 57.076 39.130 0.00 0.00 0.00 3.16
2252 2683 4.755123 AGTAGAAACGACATTCCAAACAGG 59.245 41.667 0.00 0.00 39.47 4.00
2253 2684 2.884639 AGAAACGACATTCCAAACAGGG 59.115 45.455 0.00 0.00 38.24 4.45
2254 2685 0.958822 AACGACATTCCAAACAGGGC 59.041 50.000 0.00 0.00 38.24 5.19
2255 2686 0.893727 ACGACATTCCAAACAGGGCC 60.894 55.000 0.00 0.00 38.24 5.80
2256 2687 0.609131 CGACATTCCAAACAGGGCCT 60.609 55.000 0.00 0.00 38.24 5.19
2257 2688 1.339631 CGACATTCCAAACAGGGCCTA 60.340 52.381 5.28 0.00 38.24 3.93
2270 2701 4.977393 GCCTAAGATTTGGCCGGA 57.023 55.556 5.05 0.00 42.17 5.14
2271 2702 3.421567 GCCTAAGATTTGGCCGGAT 57.578 52.632 5.05 0.00 42.17 4.18
2273 2704 1.202818 GCCTAAGATTTGGCCGGATCT 60.203 52.381 5.05 13.37 42.17 2.75
2277 2708 1.131638 AGATTTGGCCGGATCTAGCA 58.868 50.000 16.63 0.00 31.09 3.49
2300 2731 9.190317 AGCAGATCATCAATATATAACGGAGTA 57.810 33.333 0.00 0.00 45.00 2.59
2337 2768 3.743911 TGTTTATGCACTTCGTCGAACAT 59.256 39.130 2.90 8.94 0.00 2.71
2345 2965 0.989164 TTCGTCGAACATCGTCATGC 59.011 50.000 2.90 0.00 41.35 4.06
2351 2971 1.350193 GAACATCGTCATGCGTGTCT 58.650 50.000 5.68 5.32 42.13 3.41
2352 2972 2.526077 GAACATCGTCATGCGTGTCTA 58.474 47.619 5.68 0.00 42.13 2.59
2353 2973 2.871182 ACATCGTCATGCGTGTCTAT 57.129 45.000 5.68 0.00 42.13 1.98
2355 2975 2.099098 ACATCGTCATGCGTGTCTATGA 59.901 45.455 19.42 7.39 42.13 2.15
2367 2987 0.179108 GTCTATGACGCTGGTGACCC 60.179 60.000 0.00 0.00 0.00 4.46
2368 2988 0.613572 TCTATGACGCTGGTGACCCA 60.614 55.000 0.00 0.00 38.87 4.51
2369 2989 0.465705 CTATGACGCTGGTGACCCAT 59.534 55.000 0.00 0.00 40.90 4.00
2370 2990 1.686587 CTATGACGCTGGTGACCCATA 59.313 52.381 0.00 0.00 40.90 2.74
2371 2991 0.465705 ATGACGCTGGTGACCCATAG 59.534 55.000 0.00 0.00 40.90 2.23
2372 2992 0.613572 TGACGCTGGTGACCCATAGA 60.614 55.000 0.00 0.00 40.90 1.98
2374 2994 0.537188 ACGCTGGTGACCCATAGAAG 59.463 55.000 0.00 0.00 40.90 2.85
2375 2995 0.811616 CGCTGGTGACCCATAGAAGC 60.812 60.000 0.00 0.00 40.90 3.86
2376 2996 0.464554 GCTGGTGACCCATAGAAGCC 60.465 60.000 0.00 0.00 40.90 4.35
2378 2998 0.253160 TGGTGACCCATAGAAGCCCT 60.253 55.000 0.00 0.00 35.17 5.19
2379 2999 1.009060 TGGTGACCCATAGAAGCCCTA 59.991 52.381 0.00 0.00 35.17 3.53
2380 3000 1.694696 GGTGACCCATAGAAGCCCTAG 59.305 57.143 0.00 0.00 0.00 3.02
2395 3083 1.152440 CTAGGCCATCTCCCTCGGT 60.152 63.158 5.01 0.00 33.88 4.69
2410 3098 2.438254 GGTCATCGCCCATGCACA 60.438 61.111 0.00 0.00 37.32 4.57
2415 3103 0.742505 CATCGCCCATGCACATCTTT 59.257 50.000 0.00 0.00 37.32 2.52
2418 3106 0.099968 CGCCCATGCACATCTTTCTG 59.900 55.000 0.00 0.00 37.32 3.02
2424 3112 2.787249 CACATCTTTCTGGCCGCG 59.213 61.111 0.00 0.00 0.00 6.46
2451 3139 1.216178 GGCCGCCGTTGTAGTTCTA 59.784 57.895 0.00 0.00 0.00 2.10
2458 3146 3.065786 CGCCGTTGTAGTTCTATACCTCA 59.934 47.826 0.00 0.00 0.00 3.86
2459 3147 4.439153 CGCCGTTGTAGTTCTATACCTCAA 60.439 45.833 0.00 0.00 0.00 3.02
2464 3152 6.418226 CGTTGTAGTTCTATACCTCAAGATGC 59.582 42.308 0.00 0.00 0.00 3.91
2465 3153 6.073327 TGTAGTTCTATACCTCAAGATGCG 57.927 41.667 0.00 0.00 0.00 4.73
2484 3172 2.431942 CCGCGCTTCGTGTACCTT 60.432 61.111 5.56 0.00 35.46 3.50
2496 3184 0.523072 TGTACCTTGTCGACTACGCC 59.477 55.000 17.92 1.18 39.58 5.68
2504 3192 2.579787 CGACTACGCCTGCTTCCG 60.580 66.667 0.00 0.00 0.00 4.30
2545 3233 1.299648 CCCTTCGGCACATTCCTCA 59.700 57.895 0.00 0.00 0.00 3.86
2579 3267 0.681243 GTCACCTTCATTGAGGGGGC 60.681 60.000 18.12 7.58 40.80 5.80
2590 3278 2.285368 AGGGGGCCTCGATTGACA 60.285 61.111 0.84 0.00 0.00 3.58
2597 3285 1.709147 GCCTCGATTGACAAGCGCAT 61.709 55.000 20.42 0.00 40.65 4.73
2599 3287 1.001624 CTCGATTGACAAGCGCATCA 58.998 50.000 20.42 7.65 40.65 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.696374 TCTCGTCTCACATCCTTTTAAGATATT 58.304 33.333 0.00 0.00 0.00 1.28
27 28 6.531503 TCTCGTCTCACATCCTTTTAAGAT 57.468 37.500 0.00 0.00 0.00 2.40
31 32 5.977489 TCTTCTCGTCTCACATCCTTTTA 57.023 39.130 0.00 0.00 0.00 1.52
110 113 1.907739 CCGCCTCCTCCATCTCAAA 59.092 57.895 0.00 0.00 0.00 2.69
146 149 2.044946 GGCCGCCTCCTTCATGTT 60.045 61.111 0.71 0.00 0.00 2.71
181 540 0.604073 TGAATAGTTGTCCACGCCGA 59.396 50.000 0.00 0.00 0.00 5.54
187 546 5.640147 ACCTCCAAAATGAATAGTTGTCCA 58.360 37.500 0.00 0.00 0.00 4.02
286 707 0.174845 CCATCCTGTCCGCGTCTAAA 59.825 55.000 4.92 0.00 0.00 1.85
287 708 1.672854 CCCATCCTGTCCGCGTCTAA 61.673 60.000 4.92 0.00 0.00 2.10
365 786 0.179065 GTAGGGTAATGGGGTCGTGC 60.179 60.000 0.00 0.00 0.00 5.34
378 799 0.472352 TCTGTCCGTTTGGGTAGGGT 60.472 55.000 0.00 0.00 37.00 4.34
412 833 1.148310 CGCGACCTCAAACAGATGTT 58.852 50.000 0.00 0.00 40.50 2.71
415 836 0.670546 CCACGCGACCTCAAACAGAT 60.671 55.000 15.93 0.00 0.00 2.90
418 839 1.885388 CACCACGCGACCTCAAACA 60.885 57.895 15.93 0.00 0.00 2.83
424 845 1.594293 CAACTTCACCACGCGACCT 60.594 57.895 15.93 0.00 0.00 3.85
437 858 1.266178 GCCCACAATAAGGCCAACTT 58.734 50.000 5.01 0.00 43.76 2.66
453 874 0.037975 TTTCGTCTTGGTCTACGCCC 60.038 55.000 0.00 0.00 38.94 6.13
463 885 0.110644 GCTTGACCGCTTTCGTCTTG 60.111 55.000 0.00 0.00 0.00 3.02
468 890 2.174349 GCAGCTTGACCGCTTTCG 59.826 61.111 0.00 0.00 38.41 3.46
482 904 0.737367 TTCATCTTCGTGCTCCGCAG 60.737 55.000 0.00 0.00 40.08 5.18
483 905 1.014044 GTTCATCTTCGTGCTCCGCA 61.014 55.000 0.00 0.00 36.19 5.69
511 939 1.710013 AACATCGCTAGGTGTTCACG 58.290 50.000 0.00 0.00 33.53 4.35
512 940 5.600908 TTTAAACATCGCTAGGTGTTCAC 57.399 39.130 0.00 0.00 37.56 3.18
513 941 5.935206 TCATTTAAACATCGCTAGGTGTTCA 59.065 36.000 0.00 0.00 37.56 3.18
514 942 6.417191 TCATTTAAACATCGCTAGGTGTTC 57.583 37.500 0.00 0.00 37.56 3.18
516 944 6.811253 TTTCATTTAAACATCGCTAGGTGT 57.189 33.333 0.00 0.00 0.00 4.16
517 945 7.253750 GCAATTTCATTTAAACATCGCTAGGTG 60.254 37.037 0.00 0.00 0.00 4.00
518 946 6.751888 GCAATTTCATTTAAACATCGCTAGGT 59.248 34.615 0.00 0.00 0.00 3.08
519 947 6.198966 GGCAATTTCATTTAAACATCGCTAGG 59.801 38.462 0.00 0.00 0.00 3.02
520 948 6.075415 CGGCAATTTCATTTAAACATCGCTAG 60.075 38.462 0.00 0.00 0.00 3.42
521 949 5.741510 CGGCAATTTCATTTAAACATCGCTA 59.258 36.000 0.00 0.00 0.00 4.26
522 950 4.562394 CGGCAATTTCATTTAAACATCGCT 59.438 37.500 0.00 0.00 0.00 4.93
523 951 4.326009 ACGGCAATTTCATTTAAACATCGC 59.674 37.500 0.00 0.00 0.00 4.58
524 952 7.499438 TTACGGCAATTTCATTTAAACATCG 57.501 32.000 0.00 0.00 0.00 3.84
527 955 9.141400 GGTATTTACGGCAATTTCATTTAAACA 57.859 29.630 0.00 0.00 0.00 2.83
528 956 9.361315 AGGTATTTACGGCAATTTCATTTAAAC 57.639 29.630 0.00 0.00 0.00 2.01
534 962 5.049680 CGCTAGGTATTTACGGCAATTTCAT 60.050 40.000 0.00 0.00 0.00 2.57
541 969 1.268692 CGTCGCTAGGTATTTACGGCA 60.269 52.381 0.00 0.00 0.00 5.69
589 1017 6.037098 AGATCGTATTCGTCTCAAGAAAAGG 58.963 40.000 0.00 0.00 38.33 3.11
621 1049 3.162666 TCTAGAATGCCCTATGGTACCG 58.837 50.000 7.57 0.00 0.00 4.02
679 1107 0.108804 GAGCGGTGAAATGAGTCGGA 60.109 55.000 0.00 0.00 0.00 4.55
695 1123 3.300239 TGAGAGGAAGTAGGGTAGAGC 57.700 52.381 0.00 0.00 0.00 4.09
871 1301 1.115326 GTAATGCAATGCCCTCCCCC 61.115 60.000 1.53 0.00 0.00 5.40
872 1302 0.396974 TGTAATGCAATGCCCTCCCC 60.397 55.000 1.53 0.00 0.00 4.81
1069 1499 3.986006 GGTGCTGGACGACGGTGA 61.986 66.667 0.00 0.00 0.00 4.02
1070 1500 3.800685 TTGGTGCTGGACGACGGTG 62.801 63.158 0.00 0.00 0.00 4.94
1071 1501 3.515316 CTTGGTGCTGGACGACGGT 62.515 63.158 0.00 0.00 0.00 4.83
1542 1972 3.702048 TACAGCACCCACCCGAGC 61.702 66.667 0.00 0.00 0.00 5.03
1548 1978 1.165270 GGATGTTGTACAGCACCCAC 58.835 55.000 17.78 8.44 35.97 4.61
1557 1987 1.369091 CCGGCTGCAGGATGTTGTAC 61.369 60.000 17.12 0.00 39.31 2.90
1620 2050 3.940975 ATGCCACGACGACGACGAC 62.941 63.158 25.15 14.15 42.66 4.34
1621 2051 3.656243 GATGCCACGACGACGACGA 62.656 63.158 25.15 4.05 42.66 4.20
1671 2101 4.171005 CGACTCTTAATAGACCAACGCAA 58.829 43.478 0.00 0.00 0.00 4.85
1674 2104 4.103357 CCACGACTCTTAATAGACCAACG 58.897 47.826 0.00 0.00 0.00 4.10
1678 2108 6.293353 GCTACTACCACGACTCTTAATAGACC 60.293 46.154 0.00 0.00 0.00 3.85
1787 2217 3.497118 CACTGAACGTAGCAGAAGAGAG 58.503 50.000 21.04 0.00 36.86 3.20
1834 2264 2.626683 CCCTAAAACCCCAATCCAGCAT 60.627 50.000 0.00 0.00 0.00 3.79
1847 2277 3.434641 GTCGGTTAGAGTTGCCCTAAAAC 59.565 47.826 0.00 0.00 0.00 2.43
1879 2310 3.342926 ACTCTGCCAGATCCTCCTTAT 57.657 47.619 0.00 0.00 0.00 1.73
1880 2311 2.856760 ACTCTGCCAGATCCTCCTTA 57.143 50.000 0.00 0.00 0.00 2.69
1891 2322 3.326588 TCTGCTAAGGTTTTACTCTGCCA 59.673 43.478 0.00 0.00 0.00 4.92
1892 2323 3.935828 CTCTGCTAAGGTTTTACTCTGCC 59.064 47.826 0.00 0.00 0.00 4.85
1893 2324 4.570930 ACTCTGCTAAGGTTTTACTCTGC 58.429 43.478 0.00 0.00 0.00 4.26
1894 2325 8.779354 AAATACTCTGCTAAGGTTTTACTCTG 57.221 34.615 0.00 0.00 0.00 3.35
1895 2326 9.794719 AAAAATACTCTGCTAAGGTTTTACTCT 57.205 29.630 0.00 0.00 0.00 3.24
1900 2331 9.011095 GGAGTAAAAATACTCTGCTAAGGTTTT 57.989 33.333 13.86 0.00 44.35 2.43
1901 2332 8.161425 TGGAGTAAAAATACTCTGCTAAGGTTT 58.839 33.333 13.86 0.00 44.35 3.27
1902 2333 7.606839 GTGGAGTAAAAATACTCTGCTAAGGTT 59.393 37.037 13.86 0.00 44.35 3.50
1903 2334 7.038231 AGTGGAGTAAAAATACTCTGCTAAGGT 60.038 37.037 13.86 0.00 44.35 3.50
1904 2335 7.331791 AGTGGAGTAAAAATACTCTGCTAAGG 58.668 38.462 13.86 0.00 44.35 2.69
1905 2336 8.779354 AAGTGGAGTAAAAATACTCTGCTAAG 57.221 34.615 13.86 0.00 44.35 2.18
1907 2338 9.871238 CTTAAGTGGAGTAAAAATACTCTGCTA 57.129 33.333 13.86 1.75 44.35 3.49
1908 2339 7.824779 CCTTAAGTGGAGTAAAAATACTCTGCT 59.175 37.037 13.86 10.00 44.35 4.24
1909 2340 7.414208 GCCTTAAGTGGAGTAAAAATACTCTGC 60.414 40.741 13.86 8.36 44.35 4.26
1910 2341 7.065923 GGCCTTAAGTGGAGTAAAAATACTCTG 59.934 40.741 13.86 0.39 44.35 3.35
1911 2342 7.110810 GGCCTTAAGTGGAGTAAAAATACTCT 58.889 38.462 13.86 0.01 44.35 3.24
1912 2343 6.036844 CGGCCTTAAGTGGAGTAAAAATACTC 59.963 42.308 0.00 7.34 44.23 2.59
1913 2344 5.878669 CGGCCTTAAGTGGAGTAAAAATACT 59.121 40.000 0.00 0.00 0.00 2.12
1914 2345 5.448225 GCGGCCTTAAGTGGAGTAAAAATAC 60.448 44.000 0.00 0.00 0.00 1.89
1915 2346 4.637091 GCGGCCTTAAGTGGAGTAAAAATA 59.363 41.667 0.00 0.00 0.00 1.40
1916 2347 3.442625 GCGGCCTTAAGTGGAGTAAAAAT 59.557 43.478 0.00 0.00 0.00 1.82
1917 2348 2.815503 GCGGCCTTAAGTGGAGTAAAAA 59.184 45.455 0.00 0.00 0.00 1.94
1918 2349 2.429478 GCGGCCTTAAGTGGAGTAAAA 58.571 47.619 0.00 0.00 0.00 1.52
1919 2350 1.673626 CGCGGCCTTAAGTGGAGTAAA 60.674 52.381 0.00 0.00 0.00 2.01
1920 2351 0.108520 CGCGGCCTTAAGTGGAGTAA 60.109 55.000 0.00 0.00 0.00 2.24
1921 2352 1.514087 CGCGGCCTTAAGTGGAGTA 59.486 57.895 0.00 0.00 0.00 2.59
1922 2353 2.264794 CGCGGCCTTAAGTGGAGT 59.735 61.111 0.00 0.00 0.00 3.85
1923 2354 3.195698 GCGCGGCCTTAAGTGGAG 61.196 66.667 8.83 0.00 0.00 3.86
1924 2355 3.248446 AAGCGCGGCCTTAAGTGGA 62.248 57.895 8.83 0.00 0.00 4.02
1925 2356 2.746277 AAGCGCGGCCTTAAGTGG 60.746 61.111 8.83 0.00 0.00 4.00
1926 2357 2.480555 CAAGCGCGGCCTTAAGTG 59.519 61.111 8.83 0.00 0.00 3.16
1927 2358 2.741486 TTCCAAGCGCGGCCTTAAGT 62.741 55.000 8.83 0.00 0.00 2.24
1928 2359 1.376609 ATTCCAAGCGCGGCCTTAAG 61.377 55.000 8.83 0.00 0.00 1.85
1929 2360 1.373590 GATTCCAAGCGCGGCCTTAA 61.374 55.000 8.83 0.00 0.00 1.85
1930 2361 1.817941 GATTCCAAGCGCGGCCTTA 60.818 57.895 8.83 0.00 0.00 2.69
1931 2362 3.134127 GATTCCAAGCGCGGCCTT 61.134 61.111 8.83 0.00 0.00 4.35
1936 2367 1.355796 TTACACCGATTCCAAGCGCG 61.356 55.000 0.00 0.00 36.32 6.86
1937 2368 0.800012 TTTACACCGATTCCAAGCGC 59.200 50.000 0.00 0.00 36.32 5.92
1938 2369 1.801771 TGTTTACACCGATTCCAAGCG 59.198 47.619 0.00 0.00 37.59 4.68
1939 2370 5.751243 ATATGTTTACACCGATTCCAAGC 57.249 39.130 0.00 0.00 0.00 4.01
1940 2371 7.780008 TGTATATGTTTACACCGATTCCAAG 57.220 36.000 0.00 0.00 0.00 3.61
1941 2372 7.825270 ACTTGTATATGTTTACACCGATTCCAA 59.175 33.333 0.00 0.00 31.98 3.53
1942 2373 7.279090 CACTTGTATATGTTTACACCGATTCCA 59.721 37.037 0.00 0.00 31.98 3.53
1943 2374 7.279313 ACACTTGTATATGTTTACACCGATTCC 59.721 37.037 0.00 0.00 31.98 3.01
1944 2375 8.193250 ACACTTGTATATGTTTACACCGATTC 57.807 34.615 0.00 0.00 31.98 2.52
1945 2376 9.826574 ATACACTTGTATATGTTTACACCGATT 57.173 29.630 0.00 0.00 39.29 3.34
1946 2377 9.826574 AATACACTTGTATATGTTTACACCGAT 57.173 29.630 2.30 0.00 40.10 4.18
1947 2378 9.656040 AAATACACTTGTATATGTTTACACCGA 57.344 29.630 2.30 0.00 40.10 4.69
1958 2389 9.895138 ACCCGTAAGAAAAATACACTTGTATAT 57.105 29.630 2.30 0.00 39.07 0.86
1959 2390 9.153721 CACCCGTAAGAAAAATACACTTGTATA 57.846 33.333 2.30 0.00 39.07 1.47
1960 2391 7.662669 ACACCCGTAAGAAAAATACACTTGTAT 59.337 33.333 0.00 0.00 40.88 2.29
1961 2392 6.991531 ACACCCGTAAGAAAAATACACTTGTA 59.008 34.615 0.00 0.00 43.02 2.41
1962 2393 5.824097 ACACCCGTAAGAAAAATACACTTGT 59.176 36.000 0.00 0.00 43.02 3.16
1970 2401 6.536224 CGGTAAGATACACCCGTAAGAAAAAT 59.464 38.462 0.00 0.00 43.02 1.82
1976 2407 2.544486 GCCGGTAAGATACACCCGTAAG 60.544 54.545 1.90 0.00 38.79 2.34
1981 2412 0.106149 CTGGCCGGTAAGATACACCC 59.894 60.000 2.29 0.00 31.96 4.61
1982 2413 0.106149 CCTGGCCGGTAAGATACACC 59.894 60.000 11.58 0.00 0.00 4.16
1983 2414 1.068741 CTCCTGGCCGGTAAGATACAC 59.931 57.143 11.58 0.00 0.00 2.90
1984 2415 1.410004 CTCCTGGCCGGTAAGATACA 58.590 55.000 11.58 0.00 0.00 2.29
1985 2416 0.033642 GCTCCTGGCCGGTAAGATAC 59.966 60.000 11.58 0.00 34.27 2.24
1986 2417 1.461091 CGCTCCTGGCCGGTAAGATA 61.461 60.000 11.58 0.00 37.74 1.98
1987 2418 2.797278 CGCTCCTGGCCGGTAAGAT 61.797 63.158 11.58 0.00 37.74 2.40
1988 2419 3.458163 CGCTCCTGGCCGGTAAGA 61.458 66.667 11.58 0.00 37.74 2.10
1989 2420 2.311688 AATCGCTCCTGGCCGGTAAG 62.312 60.000 11.58 8.83 37.74 2.34
1990 2421 1.906105 AAATCGCTCCTGGCCGGTAA 61.906 55.000 11.58 0.00 37.74 2.85
1991 2422 2.363975 AAATCGCTCCTGGCCGGTA 61.364 57.895 11.58 0.00 37.74 4.02
1992 2423 3.717294 AAATCGCTCCTGGCCGGT 61.717 61.111 11.58 0.00 37.74 5.28
1993 2424 3.204827 CAAATCGCTCCTGGCCGG 61.205 66.667 3.88 3.88 37.74 6.13
1994 2425 3.880846 GCAAATCGCTCCTGGCCG 61.881 66.667 0.00 0.00 37.77 6.13
1995 2426 2.751436 TGCAAATCGCTCCTGGCC 60.751 61.111 0.00 0.00 43.06 5.36
1996 2427 2.768492 CCTGCAAATCGCTCCTGGC 61.768 63.158 0.00 0.00 43.06 4.85
1997 2428 2.117156 CCCTGCAAATCGCTCCTGG 61.117 63.158 0.00 0.00 43.06 4.45
1998 2429 2.117156 CCCCTGCAAATCGCTCCTG 61.117 63.158 0.00 0.00 43.06 3.86
1999 2430 2.273449 CCCCTGCAAATCGCTCCT 59.727 61.111 0.00 0.00 43.06 3.69
2000 2431 2.830370 CCCCCTGCAAATCGCTCC 60.830 66.667 0.00 0.00 43.06 4.70
2001 2432 0.965363 TTTCCCCCTGCAAATCGCTC 60.965 55.000 0.00 0.00 43.06 5.03
2002 2433 0.324645 ATTTCCCCCTGCAAATCGCT 60.325 50.000 0.00 0.00 43.06 4.93
2003 2434 0.179103 CATTTCCCCCTGCAAATCGC 60.179 55.000 0.00 0.00 42.89 4.58
2004 2435 1.473258 TCATTTCCCCCTGCAAATCG 58.527 50.000 0.00 0.00 0.00 3.34
2005 2436 3.979101 TTTCATTTCCCCCTGCAAATC 57.021 42.857 0.00 0.00 0.00 2.17
2006 2437 3.556843 CGTTTTCATTTCCCCCTGCAAAT 60.557 43.478 0.00 0.00 0.00 2.32
2007 2438 2.224161 CGTTTTCATTTCCCCCTGCAAA 60.224 45.455 0.00 0.00 0.00 3.68
2008 2439 1.342819 CGTTTTCATTTCCCCCTGCAA 59.657 47.619 0.00 0.00 0.00 4.08
2009 2440 0.965439 CGTTTTCATTTCCCCCTGCA 59.035 50.000 0.00 0.00 0.00 4.41
2010 2441 1.067846 GTCGTTTTCATTTCCCCCTGC 60.068 52.381 0.00 0.00 0.00 4.85
2011 2442 1.199097 CGTCGTTTTCATTTCCCCCTG 59.801 52.381 0.00 0.00 0.00 4.45
2012 2443 1.530323 CGTCGTTTTCATTTCCCCCT 58.470 50.000 0.00 0.00 0.00 4.79
2013 2444 0.524414 CCGTCGTTTTCATTTCCCCC 59.476 55.000 0.00 0.00 0.00 5.40
2014 2445 1.525941 TCCGTCGTTTTCATTTCCCC 58.474 50.000 0.00 0.00 0.00 4.81
2015 2446 2.159435 CCATCCGTCGTTTTCATTTCCC 60.159 50.000 0.00 0.00 0.00 3.97
2016 2447 2.486592 ACCATCCGTCGTTTTCATTTCC 59.513 45.455 0.00 0.00 0.00 3.13
2017 2448 3.488489 CACCATCCGTCGTTTTCATTTC 58.512 45.455 0.00 0.00 0.00 2.17
2018 2449 2.227865 CCACCATCCGTCGTTTTCATTT 59.772 45.455 0.00 0.00 0.00 2.32
2019 2450 1.810151 CCACCATCCGTCGTTTTCATT 59.190 47.619 0.00 0.00 0.00 2.57
2020 2451 1.448985 CCACCATCCGTCGTTTTCAT 58.551 50.000 0.00 0.00 0.00 2.57
2021 2452 1.231958 GCCACCATCCGTCGTTTTCA 61.232 55.000 0.00 0.00 0.00 2.69
2022 2453 1.500396 GCCACCATCCGTCGTTTTC 59.500 57.895 0.00 0.00 0.00 2.29
2023 2454 1.969589 GGCCACCATCCGTCGTTTT 60.970 57.895 0.00 0.00 0.00 2.43
2024 2455 2.359478 GGCCACCATCCGTCGTTT 60.359 61.111 0.00 0.00 0.00 3.60
2025 2456 3.319198 AGGCCACCATCCGTCGTT 61.319 61.111 5.01 0.00 0.00 3.85
2026 2457 4.082523 CAGGCCACCATCCGTCGT 62.083 66.667 5.01 0.00 0.00 4.34
2027 2458 2.233605 TTACAGGCCACCATCCGTCG 62.234 60.000 5.01 0.00 0.00 5.12
2028 2459 0.743345 GTTACAGGCCACCATCCGTC 60.743 60.000 5.01 0.00 0.00 4.79
2029 2460 1.198759 AGTTACAGGCCACCATCCGT 61.199 55.000 5.01 0.00 0.00 4.69
2030 2461 0.035439 AAGTTACAGGCCACCATCCG 60.035 55.000 5.01 0.00 0.00 4.18
2031 2462 2.215942 AAAGTTACAGGCCACCATCC 57.784 50.000 5.01 0.00 0.00 3.51
2032 2463 4.076394 TGTAAAAGTTACAGGCCACCATC 58.924 43.478 5.01 0.00 0.00 3.51
2033 2464 4.107127 TGTAAAAGTTACAGGCCACCAT 57.893 40.909 5.01 0.00 0.00 3.55
2034 2465 3.579534 TGTAAAAGTTACAGGCCACCA 57.420 42.857 5.01 0.00 0.00 4.17
2035 2466 3.305131 GCTTGTAAAAGTTACAGGCCACC 60.305 47.826 19.09 0.00 42.40 4.61
2036 2467 3.608474 CGCTTGTAAAAGTTACAGGCCAC 60.608 47.826 22.06 0.00 44.42 5.01
2037 2468 2.550606 CGCTTGTAAAAGTTACAGGCCA 59.449 45.455 22.06 1.37 44.42 5.36
2038 2469 2.551032 ACGCTTGTAAAAGTTACAGGCC 59.449 45.455 22.06 0.00 44.42 5.19
2039 2470 3.891056 ACGCTTGTAAAAGTTACAGGC 57.109 42.857 19.59 19.59 44.01 4.85
2040 2471 7.124347 TGAATACGCTTGTAAAAGTTACAGG 57.876 36.000 6.03 6.03 0.00 4.00
2041 2472 8.996988 TTTGAATACGCTTGTAAAAGTTACAG 57.003 30.769 1.49 0.00 0.00 2.74
2042 2473 8.614346 ACTTTGAATACGCTTGTAAAAGTTACA 58.386 29.630 0.00 0.00 34.99 2.41
2043 2474 8.998558 ACTTTGAATACGCTTGTAAAAGTTAC 57.001 30.769 0.00 0.00 34.99 2.50
2045 2476 9.048446 TCTACTTTGAATACGCTTGTAAAAGTT 57.952 29.630 8.27 0.00 37.60 2.66
2046 2477 8.597662 TCTACTTTGAATACGCTTGTAAAAGT 57.402 30.769 0.00 0.00 38.85 2.66
2047 2478 9.872757 TTTCTACTTTGAATACGCTTGTAAAAG 57.127 29.630 0.00 0.00 33.02 2.27
2048 2479 9.654417 GTTTCTACTTTGAATACGCTTGTAAAA 57.346 29.630 0.00 0.00 0.00 1.52
2049 2480 8.005466 CGTTTCTACTTTGAATACGCTTGTAAA 58.995 33.333 0.00 0.00 0.00 2.01
2050 2481 7.381948 TCGTTTCTACTTTGAATACGCTTGTAA 59.618 33.333 0.00 0.00 34.18 2.41
2051 2482 6.862608 TCGTTTCTACTTTGAATACGCTTGTA 59.137 34.615 0.00 0.00 34.18 2.41
2052 2483 5.693104 TCGTTTCTACTTTGAATACGCTTGT 59.307 36.000 0.00 0.00 34.18 3.16
2053 2484 6.007677 GTCGTTTCTACTTTGAATACGCTTG 58.992 40.000 0.00 0.00 34.18 4.01
2054 2485 5.693104 TGTCGTTTCTACTTTGAATACGCTT 59.307 36.000 0.00 0.00 34.18 4.68
2055 2486 5.224888 TGTCGTTTCTACTTTGAATACGCT 58.775 37.500 0.00 0.00 34.18 5.07
2056 2487 5.505165 TGTCGTTTCTACTTTGAATACGC 57.495 39.130 0.00 0.00 34.18 4.42
2057 2488 7.148705 TGGAATGTCGTTTCTACTTTGAATACG 60.149 37.037 0.00 0.00 34.78 3.06
2058 2489 8.025243 TGGAATGTCGTTTCTACTTTGAATAC 57.975 34.615 0.00 0.00 0.00 1.89
2059 2490 8.610248 TTGGAATGTCGTTTCTACTTTGAATA 57.390 30.769 0.00 0.00 0.00 1.75
2060 2491 7.504924 TTGGAATGTCGTTTCTACTTTGAAT 57.495 32.000 0.00 0.00 0.00 2.57
2061 2492 6.928979 TTGGAATGTCGTTTCTACTTTGAA 57.071 33.333 0.00 0.00 0.00 2.69
2062 2493 6.316640 TGTTTGGAATGTCGTTTCTACTTTGA 59.683 34.615 0.00 0.00 0.00 2.69
2063 2494 6.491394 TGTTTGGAATGTCGTTTCTACTTTG 58.509 36.000 0.00 0.00 0.00 2.77
2064 2495 6.238648 CCTGTTTGGAATGTCGTTTCTACTTT 60.239 38.462 0.00 0.00 38.35 2.66
2065 2496 5.238650 CCTGTTTGGAATGTCGTTTCTACTT 59.761 40.000 0.00 0.00 38.35 2.24
2066 2497 4.755123 CCTGTTTGGAATGTCGTTTCTACT 59.245 41.667 0.00 0.00 38.35 2.57
2067 2498 4.083484 CCCTGTTTGGAATGTCGTTTCTAC 60.083 45.833 0.00 0.00 38.35 2.59
2068 2499 4.069304 CCCTGTTTGGAATGTCGTTTCTA 58.931 43.478 0.00 0.00 38.35 2.10
2069 2500 2.884639 CCCTGTTTGGAATGTCGTTTCT 59.115 45.455 0.00 0.00 38.35 2.52
2070 2501 2.607038 GCCCTGTTTGGAATGTCGTTTC 60.607 50.000 0.00 0.00 38.35 2.78
2071 2502 1.339929 GCCCTGTTTGGAATGTCGTTT 59.660 47.619 0.00 0.00 38.35 3.60
2072 2503 0.958822 GCCCTGTTTGGAATGTCGTT 59.041 50.000 0.00 0.00 38.35 3.85
2073 2504 0.893727 GGCCCTGTTTGGAATGTCGT 60.894 55.000 0.00 0.00 38.35 4.34
2074 2505 0.609131 AGGCCCTGTTTGGAATGTCG 60.609 55.000 0.00 0.00 38.35 4.35
2075 2506 2.507407 TAGGCCCTGTTTGGAATGTC 57.493 50.000 0.00 0.00 38.35 3.06
2076 2507 2.557452 CCTTAGGCCCTGTTTGGAATGT 60.557 50.000 0.00 0.00 38.35 2.71
2077 2508 2.102578 CCTTAGGCCCTGTTTGGAATG 58.897 52.381 0.00 0.00 38.35 2.67
2078 2509 1.619704 GCCTTAGGCCCTGTTTGGAAT 60.620 52.381 13.12 0.00 44.06 3.01
2079 2510 0.251608 GCCTTAGGCCCTGTTTGGAA 60.252 55.000 13.12 0.00 44.06 3.53
2080 2511 1.382629 GCCTTAGGCCCTGTTTGGA 59.617 57.895 13.12 0.00 44.06 3.53
2081 2512 4.018409 GCCTTAGGCCCTGTTTGG 57.982 61.111 13.12 0.00 44.06 3.28
2091 2522 3.969250 TTCCAAGCGCGGCCTTAGG 62.969 63.158 8.83 8.20 0.00 2.69
2092 2523 1.776034 GATTCCAAGCGCGGCCTTAG 61.776 60.000 8.83 0.00 0.00 2.18
2093 2524 1.817941 GATTCCAAGCGCGGCCTTA 60.818 57.895 8.83 0.00 0.00 2.69
2094 2525 3.134127 GATTCCAAGCGCGGCCTT 61.134 61.111 8.83 0.00 0.00 4.35
2099 2530 1.355796 TTACACCGATTCCAAGCGCG 61.356 55.000 0.00 0.00 36.32 6.86
2100 2531 0.800012 TTTACACCGATTCCAAGCGC 59.200 50.000 0.00 0.00 36.32 5.92
2101 2532 1.801771 TGTTTACACCGATTCCAAGCG 59.198 47.619 0.00 0.00 37.59 4.68
2102 2533 5.751243 ATATGTTTACACCGATTCCAAGC 57.249 39.130 0.00 0.00 0.00 4.01
2103 2534 7.780008 TGTATATGTTTACACCGATTCCAAG 57.220 36.000 0.00 0.00 0.00 3.61
2104 2535 7.825270 ACTTGTATATGTTTACACCGATTCCAA 59.175 33.333 0.00 0.00 31.98 3.53
2105 2536 7.279090 CACTTGTATATGTTTACACCGATTCCA 59.721 37.037 0.00 0.00 31.98 3.53
2106 2537 7.279313 ACACTTGTATATGTTTACACCGATTCC 59.721 37.037 0.00 0.00 31.98 3.01
2107 2538 8.193250 ACACTTGTATATGTTTACACCGATTC 57.807 34.615 0.00 0.00 31.98 2.52
2108 2539 9.826574 ATACACTTGTATATGTTTACACCGATT 57.173 29.630 0.00 0.00 39.29 3.34
2109 2540 9.826574 AATACACTTGTATATGTTTACACCGAT 57.173 29.630 2.30 0.00 40.10 4.18
2110 2541 9.656040 AAATACACTTGTATATGTTTACACCGA 57.344 29.630 2.30 0.00 40.10 4.69
2121 2552 9.895138 ACCCGTAAGAAAAATACACTTGTATAT 57.105 29.630 2.30 0.00 39.07 0.86
2122 2553 9.153721 CACCCGTAAGAAAAATACACTTGTATA 57.846 33.333 2.30 0.00 39.07 1.47
2123 2554 7.662669 ACACCCGTAAGAAAAATACACTTGTAT 59.337 33.333 0.00 0.00 40.88 2.29
2124 2555 6.991531 ACACCCGTAAGAAAAATACACTTGTA 59.008 34.615 0.00 0.00 43.02 2.41
2125 2556 5.824097 ACACCCGTAAGAAAAATACACTTGT 59.176 36.000 0.00 0.00 43.02 3.16
2126 2557 6.308371 ACACCCGTAAGAAAAATACACTTG 57.692 37.500 0.00 0.00 43.02 3.16
2127 2558 8.098912 AGATACACCCGTAAGAAAAATACACTT 58.901 33.333 0.00 0.00 43.02 3.16
2128 2559 7.618137 AGATACACCCGTAAGAAAAATACACT 58.382 34.615 0.00 0.00 43.02 3.55
2129 2560 7.838771 AGATACACCCGTAAGAAAAATACAC 57.161 36.000 0.00 0.00 43.02 2.90
2130 2561 9.369904 GTAAGATACACCCGTAAGAAAAATACA 57.630 33.333 0.00 0.00 43.02 2.29
2131 2562 8.820933 GGTAAGATACACCCGTAAGAAAAATAC 58.179 37.037 0.00 0.00 43.02 1.89
2132 2563 7.706179 CGGTAAGATACACCCGTAAGAAAAATA 59.294 37.037 0.00 0.00 43.02 1.40
2133 2564 6.536224 CGGTAAGATACACCCGTAAGAAAAAT 59.464 38.462 0.00 0.00 43.02 1.82
2134 2565 5.868801 CGGTAAGATACACCCGTAAGAAAAA 59.131 40.000 0.00 0.00 43.02 1.94
2135 2566 5.410067 CGGTAAGATACACCCGTAAGAAAA 58.590 41.667 0.00 0.00 43.02 2.29
2136 2567 4.142182 CCGGTAAGATACACCCGTAAGAAA 60.142 45.833 0.00 0.00 38.79 2.52
2137 2568 3.381272 CCGGTAAGATACACCCGTAAGAA 59.619 47.826 0.00 0.00 38.79 2.52
2138 2569 2.951642 CCGGTAAGATACACCCGTAAGA 59.048 50.000 0.00 0.00 38.79 2.10
2139 2570 2.544486 GCCGGTAAGATACACCCGTAAG 60.544 54.545 1.90 0.00 38.79 2.34
2140 2571 1.408702 GCCGGTAAGATACACCCGTAA 59.591 52.381 1.90 0.00 38.79 3.18
2141 2572 1.032014 GCCGGTAAGATACACCCGTA 58.968 55.000 1.90 0.00 38.79 4.02
2142 2573 1.679559 GGCCGGTAAGATACACCCGT 61.680 60.000 1.90 0.00 38.79 5.28
2143 2574 1.068585 GGCCGGTAAGATACACCCG 59.931 63.158 1.90 0.00 40.12 5.28
2144 2575 0.106149 CTGGCCGGTAAGATACACCC 59.894 60.000 2.29 0.00 31.96 4.61
2145 2576 0.106149 CCTGGCCGGTAAGATACACC 59.894 60.000 11.58 0.00 0.00 4.16
2146 2577 1.068741 CTCCTGGCCGGTAAGATACAC 59.931 57.143 11.58 0.00 0.00 2.90
2147 2578 1.410004 CTCCTGGCCGGTAAGATACA 58.590 55.000 11.58 0.00 0.00 2.29
2148 2579 0.033642 GCTCCTGGCCGGTAAGATAC 59.966 60.000 11.58 0.00 34.27 2.24
2149 2580 1.461091 CGCTCCTGGCCGGTAAGATA 61.461 60.000 11.58 0.00 37.74 1.98
2150 2581 2.797278 CGCTCCTGGCCGGTAAGAT 61.797 63.158 11.58 0.00 37.74 2.40
2151 2582 3.458163 CGCTCCTGGCCGGTAAGA 61.458 66.667 11.58 0.00 37.74 2.10
2152 2583 2.311688 AATCGCTCCTGGCCGGTAAG 62.312 60.000 11.58 8.83 37.74 2.34
2153 2584 1.906105 AAATCGCTCCTGGCCGGTAA 61.906 55.000 11.58 0.00 37.74 2.85
2154 2585 2.363975 AAATCGCTCCTGGCCGGTA 61.364 57.895 11.58 0.00 37.74 4.02
2155 2586 3.717294 AAATCGCTCCTGGCCGGT 61.717 61.111 11.58 0.00 37.74 5.28
2156 2587 3.204827 CAAATCGCTCCTGGCCGG 61.205 66.667 3.88 3.88 37.74 6.13
2157 2588 3.880846 GCAAATCGCTCCTGGCCG 61.881 66.667 0.00 0.00 37.77 6.13
2158 2589 2.751436 TGCAAATCGCTCCTGGCC 60.751 61.111 0.00 0.00 43.06 5.36
2159 2590 2.768492 CCTGCAAATCGCTCCTGGC 61.768 63.158 0.00 0.00 43.06 4.85
2160 2591 2.117156 CCCTGCAAATCGCTCCTGG 61.117 63.158 0.00 0.00 43.06 4.45
2161 2592 2.117156 CCCCTGCAAATCGCTCCTG 61.117 63.158 0.00 0.00 43.06 3.86
2162 2593 2.273449 CCCCTGCAAATCGCTCCT 59.727 61.111 0.00 0.00 43.06 3.69
2163 2594 2.830370 CCCCCTGCAAATCGCTCC 60.830 66.667 0.00 0.00 43.06 4.70
2164 2595 0.965363 TTTCCCCCTGCAAATCGCTC 60.965 55.000 0.00 0.00 43.06 5.03
2165 2596 0.324645 ATTTCCCCCTGCAAATCGCT 60.325 50.000 0.00 0.00 43.06 4.93
2166 2597 0.179103 CATTTCCCCCTGCAAATCGC 60.179 55.000 0.00 0.00 42.89 4.58
2167 2598 1.473258 TCATTTCCCCCTGCAAATCG 58.527 50.000 0.00 0.00 0.00 3.34
2168 2599 3.979101 TTTCATTTCCCCCTGCAAATC 57.021 42.857 0.00 0.00 0.00 2.17
2169 2600 3.556843 CGTTTTCATTTCCCCCTGCAAAT 60.557 43.478 0.00 0.00 0.00 2.32
2170 2601 2.224161 CGTTTTCATTTCCCCCTGCAAA 60.224 45.455 0.00 0.00 0.00 3.68
2171 2602 1.342819 CGTTTTCATTTCCCCCTGCAA 59.657 47.619 0.00 0.00 0.00 4.08
2172 2603 0.965439 CGTTTTCATTTCCCCCTGCA 59.035 50.000 0.00 0.00 0.00 4.41
2173 2604 1.067846 GTCGTTTTCATTTCCCCCTGC 60.068 52.381 0.00 0.00 0.00 4.85
2174 2605 1.199097 CGTCGTTTTCATTTCCCCCTG 59.801 52.381 0.00 0.00 0.00 4.45
2175 2606 1.530323 CGTCGTTTTCATTTCCCCCT 58.470 50.000 0.00 0.00 0.00 4.79
2176 2607 0.524414 CCGTCGTTTTCATTTCCCCC 59.476 55.000 0.00 0.00 0.00 5.40
2177 2608 1.525941 TCCGTCGTTTTCATTTCCCC 58.474 50.000 0.00 0.00 0.00 4.81
2178 2609 2.159435 CCATCCGTCGTTTTCATTTCCC 60.159 50.000 0.00 0.00 0.00 3.97
2179 2610 2.486592 ACCATCCGTCGTTTTCATTTCC 59.513 45.455 0.00 0.00 0.00 3.13
2180 2611 3.488489 CACCATCCGTCGTTTTCATTTC 58.512 45.455 0.00 0.00 0.00 2.17
2181 2612 2.227865 CCACCATCCGTCGTTTTCATTT 59.772 45.455 0.00 0.00 0.00 2.32
2182 2613 1.810151 CCACCATCCGTCGTTTTCATT 59.190 47.619 0.00 0.00 0.00 2.57
2183 2614 1.448985 CCACCATCCGTCGTTTTCAT 58.551 50.000 0.00 0.00 0.00 2.57
2184 2615 1.231958 GCCACCATCCGTCGTTTTCA 61.232 55.000 0.00 0.00 0.00 2.69
2185 2616 1.500396 GCCACCATCCGTCGTTTTC 59.500 57.895 0.00 0.00 0.00 2.29
2186 2617 1.969589 GGCCACCATCCGTCGTTTT 60.970 57.895 0.00 0.00 0.00 2.43
2187 2618 2.359478 GGCCACCATCCGTCGTTT 60.359 61.111 0.00 0.00 0.00 3.60
2188 2619 3.319198 AGGCCACCATCCGTCGTT 61.319 61.111 5.01 0.00 0.00 3.85
2189 2620 4.082523 CAGGCCACCATCCGTCGT 62.083 66.667 5.01 0.00 0.00 4.34
2190 2621 2.233605 TTACAGGCCACCATCCGTCG 62.234 60.000 5.01 0.00 0.00 5.12
2191 2622 0.743345 GTTACAGGCCACCATCCGTC 60.743 60.000 5.01 0.00 0.00 4.79
2192 2623 1.198759 AGTTACAGGCCACCATCCGT 61.199 55.000 5.01 0.00 0.00 4.69
2193 2624 0.035439 AAGTTACAGGCCACCATCCG 60.035 55.000 5.01 0.00 0.00 4.18
2194 2625 2.215942 AAAGTTACAGGCCACCATCC 57.784 50.000 5.01 0.00 0.00 3.51
2195 2626 4.076394 TGTAAAAGTTACAGGCCACCATC 58.924 43.478 5.01 0.00 0.00 3.51
2196 2627 4.107127 TGTAAAAGTTACAGGCCACCAT 57.893 40.909 5.01 0.00 0.00 3.55
2197 2628 3.579534 TGTAAAAGTTACAGGCCACCA 57.420 42.857 5.01 0.00 0.00 4.17
2198 2629 3.305131 GCTTGTAAAAGTTACAGGCCACC 60.305 47.826 19.09 0.00 42.40 4.61
2199 2630 3.608474 CGCTTGTAAAAGTTACAGGCCAC 60.608 47.826 22.06 0.00 44.42 5.01
2200 2631 2.550606 CGCTTGTAAAAGTTACAGGCCA 59.449 45.455 22.06 1.37 44.42 5.36
2201 2632 2.551032 ACGCTTGTAAAAGTTACAGGCC 59.449 45.455 22.06 0.00 44.42 5.19
2202 2633 3.891056 ACGCTTGTAAAAGTTACAGGC 57.109 42.857 19.59 19.59 44.01 4.85
2203 2634 7.124347 TGAATACGCTTGTAAAAGTTACAGG 57.876 36.000 6.03 6.03 0.00 4.00
2204 2635 8.996988 TTTGAATACGCTTGTAAAAGTTACAG 57.003 30.769 1.49 0.00 0.00 2.74
2205 2636 8.614346 ACTTTGAATACGCTTGTAAAAGTTACA 58.386 29.630 0.00 0.00 34.99 2.41
2206 2637 8.998558 ACTTTGAATACGCTTGTAAAAGTTAC 57.001 30.769 0.00 0.00 34.99 2.50
2208 2639 9.048446 TCTACTTTGAATACGCTTGTAAAAGTT 57.952 29.630 8.27 0.00 37.60 2.66
2209 2640 8.597662 TCTACTTTGAATACGCTTGTAAAAGT 57.402 30.769 0.00 0.00 38.85 2.66
2210 2641 9.872757 TTTCTACTTTGAATACGCTTGTAAAAG 57.127 29.630 0.00 0.00 33.02 2.27
2211 2642 9.654417 GTTTCTACTTTGAATACGCTTGTAAAA 57.346 29.630 0.00 0.00 0.00 1.52
2212 2643 8.005466 CGTTTCTACTTTGAATACGCTTGTAAA 58.995 33.333 0.00 0.00 0.00 2.01
2213 2644 7.381948 TCGTTTCTACTTTGAATACGCTTGTAA 59.618 33.333 0.00 0.00 34.18 2.41
2214 2645 6.862608 TCGTTTCTACTTTGAATACGCTTGTA 59.137 34.615 0.00 0.00 34.18 2.41
2215 2646 5.693104 TCGTTTCTACTTTGAATACGCTTGT 59.307 36.000 0.00 0.00 34.18 3.16
2216 2647 6.007677 GTCGTTTCTACTTTGAATACGCTTG 58.992 40.000 0.00 0.00 34.18 4.01
2217 2648 5.693104 TGTCGTTTCTACTTTGAATACGCTT 59.307 36.000 0.00 0.00 34.18 4.68
2218 2649 5.224888 TGTCGTTTCTACTTTGAATACGCT 58.775 37.500 0.00 0.00 34.18 5.07
2219 2650 5.505165 TGTCGTTTCTACTTTGAATACGC 57.495 39.130 0.00 0.00 34.18 4.42
2220 2651 7.148705 TGGAATGTCGTTTCTACTTTGAATACG 60.149 37.037 0.00 0.00 34.78 3.06
2221 2652 8.025243 TGGAATGTCGTTTCTACTTTGAATAC 57.975 34.615 0.00 0.00 0.00 1.89
2222 2653 8.610248 TTGGAATGTCGTTTCTACTTTGAATA 57.390 30.769 0.00 0.00 0.00 1.75
2223 2654 7.504924 TTGGAATGTCGTTTCTACTTTGAAT 57.495 32.000 0.00 0.00 0.00 2.57
2224 2655 6.928979 TTGGAATGTCGTTTCTACTTTGAA 57.071 33.333 0.00 0.00 0.00 2.69
2225 2656 6.316640 TGTTTGGAATGTCGTTTCTACTTTGA 59.683 34.615 0.00 0.00 0.00 2.69
2226 2657 6.491394 TGTTTGGAATGTCGTTTCTACTTTG 58.509 36.000 0.00 0.00 0.00 2.77
2227 2658 6.238648 CCTGTTTGGAATGTCGTTTCTACTTT 60.239 38.462 0.00 0.00 38.35 2.66
2228 2659 5.238650 CCTGTTTGGAATGTCGTTTCTACTT 59.761 40.000 0.00 0.00 38.35 2.24
2229 2660 4.755123 CCTGTTTGGAATGTCGTTTCTACT 59.245 41.667 0.00 0.00 38.35 2.57
2230 2661 4.083484 CCCTGTTTGGAATGTCGTTTCTAC 60.083 45.833 0.00 0.00 38.35 2.59
2231 2662 4.069304 CCCTGTTTGGAATGTCGTTTCTA 58.931 43.478 0.00 0.00 38.35 2.10
2232 2663 2.884639 CCCTGTTTGGAATGTCGTTTCT 59.115 45.455 0.00 0.00 38.35 2.52
2233 2664 2.607038 GCCCTGTTTGGAATGTCGTTTC 60.607 50.000 0.00 0.00 38.35 2.78
2234 2665 1.339929 GCCCTGTTTGGAATGTCGTTT 59.660 47.619 0.00 0.00 38.35 3.60
2235 2666 0.958822 GCCCTGTTTGGAATGTCGTT 59.041 50.000 0.00 0.00 38.35 3.85
2236 2667 0.893727 GGCCCTGTTTGGAATGTCGT 60.894 55.000 0.00 0.00 38.35 4.34
2237 2668 0.609131 AGGCCCTGTTTGGAATGTCG 60.609 55.000 0.00 0.00 38.35 4.35
2238 2669 2.507407 TAGGCCCTGTTTGGAATGTC 57.493 50.000 0.00 0.00 38.35 3.06
2239 2670 2.378547 TCTTAGGCCCTGTTTGGAATGT 59.621 45.455 0.00 0.00 38.35 2.71
2240 2671 3.085952 TCTTAGGCCCTGTTTGGAATG 57.914 47.619 0.00 0.00 38.35 2.67
2241 2672 4.337264 AATCTTAGGCCCTGTTTGGAAT 57.663 40.909 0.00 0.00 38.35 3.01
2242 2673 3.825908 AATCTTAGGCCCTGTTTGGAA 57.174 42.857 0.00 0.00 38.35 3.53
2243 2674 3.430453 CAAATCTTAGGCCCTGTTTGGA 58.570 45.455 0.00 0.00 38.35 3.53
2244 2675 2.497273 CCAAATCTTAGGCCCTGTTTGG 59.503 50.000 16.41 16.41 39.47 3.28
2245 2676 2.094026 GCCAAATCTTAGGCCCTGTTTG 60.094 50.000 0.00 4.46 45.18 2.93
2246 2677 2.179427 GCCAAATCTTAGGCCCTGTTT 58.821 47.619 0.00 0.00 45.18 2.83
2247 2678 1.852633 GCCAAATCTTAGGCCCTGTT 58.147 50.000 0.00 0.00 45.18 3.16
2248 2679 3.596362 GCCAAATCTTAGGCCCTGT 57.404 52.632 0.00 0.00 45.18 4.00
2254 2685 2.938956 AGATCCGGCCAAATCTTAGG 57.061 50.000 10.40 0.00 0.00 2.69
2255 2686 3.244215 TGCTAGATCCGGCCAAATCTTAG 60.244 47.826 19.07 14.88 34.21 2.18
2256 2687 2.703536 TGCTAGATCCGGCCAAATCTTA 59.296 45.455 19.07 6.80 34.21 2.10
2257 2688 1.490490 TGCTAGATCCGGCCAAATCTT 59.510 47.619 19.07 6.80 34.21 2.40
2271 2702 9.408648 TCCGTTATATATTGATGATCTGCTAGA 57.591 33.333 0.00 0.00 0.00 2.43
2273 2704 9.190317 ACTCCGTTATATATTGATGATCTGCTA 57.810 33.333 0.00 0.00 0.00 3.49
2325 2756 1.007011 GCATGACGATGTTCGACGAAG 60.007 52.381 11.25 1.55 43.74 3.79
2345 2965 0.170339 TCACCAGCGTCATAGACACG 59.830 55.000 0.00 0.00 40.35 4.49
2351 2971 4.121906 TGGGTCACCAGCGTCATA 57.878 55.556 0.00 0.00 43.37 2.15
2361 2981 1.694696 CCTAGGGCTTCTATGGGTCAC 59.305 57.143 0.00 0.00 0.00 3.67
2375 2995 1.910772 CGAGGGAGATGGCCTAGGG 60.911 68.421 11.72 0.00 0.00 3.53
2376 2996 1.910772 CCGAGGGAGATGGCCTAGG 60.911 68.421 3.67 3.67 0.00 3.02
2378 2998 1.152525 GACCGAGGGAGATGGCCTA 60.153 63.158 3.32 0.00 0.00 3.93
2379 2999 2.444895 GACCGAGGGAGATGGCCT 60.445 66.667 3.32 0.00 0.00 5.19
2380 3000 2.105806 GATGACCGAGGGAGATGGCC 62.106 65.000 0.00 0.00 0.00 5.36
2382 3002 1.662608 CGATGACCGAGGGAGATGG 59.337 63.158 0.00 0.00 41.76 3.51
2384 3004 2.203771 GGCGATGACCGAGGGAGAT 61.204 63.158 0.00 0.00 41.76 2.75
2387 3007 4.770362 TGGGCGATGACCGAGGGA 62.770 66.667 0.00 0.00 41.76 4.20
2388 3008 3.550431 ATGGGCGATGACCGAGGG 61.550 66.667 0.00 0.00 41.76 4.30
2395 3083 0.107066 AAGATGTGCATGGGCGATGA 60.107 50.000 14.07 0.00 45.35 2.92
2410 3098 1.745489 GGAACGCGGCCAGAAAGAT 60.745 57.895 12.47 0.00 0.00 2.40
2437 3125 4.644103 TGAGGTATAGAACTACAACGGC 57.356 45.455 0.00 0.00 0.00 5.68
2441 3129 6.461092 CCGCATCTTGAGGTATAGAACTACAA 60.461 42.308 0.00 0.00 32.32 2.41
2442 3130 5.009710 CCGCATCTTGAGGTATAGAACTACA 59.990 44.000 0.00 0.00 32.32 2.74
2445 3133 3.243907 GCCGCATCTTGAGGTATAGAACT 60.244 47.826 0.00 0.00 39.68 3.01
2451 3139 1.069765 CGGCCGCATCTTGAGGTAT 59.930 57.895 14.67 0.00 39.68 2.73
2474 3162 1.460743 CGTAGTCGACAAGGTACACGA 59.539 52.381 19.50 0.00 39.71 4.35
2579 3267 0.302890 GATGCGCTTGTCAATCGAGG 59.697 55.000 12.73 0.00 0.00 4.63
2583 3271 1.333524 CGGATGATGCGCTTGTCAATC 60.334 52.381 9.73 2.11 0.00 2.67
2585 3273 0.673333 ACGGATGATGCGCTTGTCAA 60.673 50.000 9.73 0.00 33.30 3.18
2590 3278 1.064505 CATGAAACGGATGATGCGCTT 59.935 47.619 9.73 0.55 33.30 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.