>input_sequence_74188
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---------------------------------------------------------------------ATGGCGACCAT
AGCCACGATGACCATGCTCAAGCCCGCCAAGATCACGGCCAGGTCGGCGCCTTCGTCGTCACCGTCGTCCAGCACCAAGG
TGGCGTCCCCGAGCATCTCGCTGCGCAGCCTGCAGAAGAACGCGGCCAAGAAGGGGGCCCTGGCCGTGTCGCCGGCGGCC
GCGGCCATGGCGAGCGCCTTCTTCACCTCGCTGGCCTCGTCGGACGCGGCGATGGCGTCGCAGCGGATCGCGGACGTGGC
GGCGGCGGCGCCCGCGGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGGCGCCCGCGCTCGGGTGGGTGCTCTACA
ACATCCTCCAGCCGGCGCTGAACCAGCTCAACAAGATGCGGTCCGAGAAGGCGCTCGTCGCCGGGCTCGGCATCGGCGCC
GCCGCGGCCGCGGGCCTGGCCGCCGTGCCGGAGCCGGCCTCCGCCGCCGTGCAGGAGCTCGCCGCACTGGCGGCGGTAGT
GCCCGCCGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGGCGCCCGCGCTCGGGTGGGTGCTGTACAACATCCTGC
AGCCGGCGCTGAACCAGCTCAACAAAATGCGGTCCAACTGA---------------------------------------
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>chr7A_1_TraesCS7A01G314100
ATTGCATGACACTTTGCATGGCATAATATCTTAAAAGGATGTGA--GACGAGAAGAAGCGGCAAAGCAAGGACGAGCAAA
TGAAGCAATACCTAGACCTTCAAAGGAAGAAGTTTGAGATGGAGGAGGCGGCCAAGAGGAGGAAGATCAACATGAAGGAG
GCGGCCCGACAAA-------------------------------------------------------------------
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-------------------------------------------------GGCTGTGTTGTCGGCGTGGACAACTATTCAT
TTTGGAGGTTGG-------------------CTGA--TGCCGGCGATGGACGTGTA------------------------
----------GGCCGCTGGCCTGATGAACTAGGGCTTGGCTTTCAAACGTA-------TTTTTTTATTTAGACGCGGACA
GGATGGGGCAAACGGATGCGTCCGTGCGCTGGGCGCACGGCCACCGCATCCCAGGACACGCCCGGGCACGACCCCATTAC
CCTACCCAAACGGACAGAATCCGGACAAAACGAACATCTGTTTGAGGTCGCGTGGTGAAGTTGGCCTTATTGTGGGCG-T
AGACCAAGACGAAAGCGGTCAAGCT------GCGGAGCACGAAGATGAACGTCATTACCGTGAACACCTAGCGATGTTTA
AATGAAATTGCCGTAAATACCTAGCGACGTTTCAATCCAGATGATCTCCGATCTTGCCTTTTCTTGAGACGAATACGATC
TTGTCGTTCGGTACCATAGGGCATTCTAGAGTACGCTTATATTCCTACCGCGAGATATCTCAATTTTCCGACTCATTTCA
CCGCTCT--ACCCTACTTCCTCTCATCATCAAAGTCTCCATGTAAATCGTGTGGTCCCCACGTCGTTGCTCCCACAGCCA
ATGGCATTGCAAGTTGCAGGCCGCGAGATAAGCTTTCAAACCTCGATCGCACACTCGCCGCACAAGATAAGCTAGCCACA
TCGTTCCTTCTAGAAACGCAGGGGGAGGGCATTGCATTACACACCCTCGCACCTCACACCACCCCTCCATCCACCTTTTT
GCCAGCGTGAGAGCTTCTTCTTTCTTGCGAGGGAGAGAGGGTAGCGAGCAACCAGGGAGCTAGGCGTCAATGGCGACCAT
AGCCACGATGACCATGCTCAAGCCCGCCAAGATCACGGCCAGGTCGGCGCCTTCGTCGTCACCGTCGTCCAGCACCAAGG
TGGCGTCCCCGAGCATCTCGCTGCGCAGCCTGCAGAAGAACGCGGCCAAGAAGGGGGCCCTGGCCGTGTCGCCGGCGGCC
GCGGCCATGGCGAGCGCCTTCTTCACCTCGCTGGCCTCGTCGGACGCGGCGATGGCGTCGCAGCGGATCGCGGACGTGGC
GGCGGCGGCGCCCGCGGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGGCGCCCGCGCTCGGGTGGGTGCTCTACA
ACATCCTCCAGCCGGCGCTGAACCAGCTCAACAAGATGCGGTCCGAGAAGGCGCTCGTCGCCGGGCTCGGCATCGGCGCC
GCCGCGGCCGCGGGCCTGGCCGCCGTGCCGGAGCCGGCCTCCGCCGCCGTGCAGGAGCTCGCCGCACTGGCGGCGGTAGT
GCCCGCCGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGGCGCCCGCGCTCGGGTGGGTGCTGTACAACATCCTGC
AGCCGGCGCTGAACCAGCTCAACAAAATGCGGTCCAACTGAGCGTCGTCGTCGTCGTCGTCGTGGCATCGCATGCGGTCC
GGCCGAGTGGGTTCGTATGTTTGCGTTGGTCTATTAAGAGTCGTGGTAGTAGCGTGGAACGTGGTGTGAGTGCCCGCTTG
CATACTCTCTAATCTTGTTCCTTCCATTGATCAAATGCAGTACAGCTCTTCTTGTTCTCTCTTCTGCTACGTTCAGTGCA
ATGTTCTCTTCTGCTACGTTCCAATGCTGGATTGGGGTTTTAGGGCAACTCTAACCGACCCC-TAAAAAATAAGGAGGAT
CTGGCAGAGTAAAACCTTAGCAGAGTATTTTTACTCCACTTAAGGCCGCGCTTGGAATCGGTGTAAACATATACAAGTGT
ATTTTTCTTACGGGTGTATCTTACCGGCCAGGAGCGATTTGCAGGGGGAAATGAAAACGACGGATGGTGGCCTGTAACTT
TTACAAGCGTATTCAAAGTAGAAACGACATTCCAAACAGGGCCTAAGGCCGCGCTTGGAATCGGTGTAAACATATACAAG
TGTATTTTTCTTACGGGTGTATCTTACCGGCCAGGAGCGATTTGCAGGGGGAAATGAAAACGACGGATGGTGGCCTGTAA
CTTTTACAAGCGTATTCAAAGTAGAAACGACATTCCAAACAGGGCCTAAGATTTGGCCGGATCTAGCAGATCATCAATAT
ATAACGGAGTAAAGTTATTTTTTTTTGTTTATGCACTTCGTCGAACAT--------------------------------
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-----------------------------------------------------------------------------CGT
CATGCGTGTCTATGACGCTGGTGACCCATAGAAGCCCTAGGCCATCTC--------------------------------
------------------------------------CCTCGGTCATCGCCCATGCACATCTTTCTGGCCGCGTTCCTGCC
GGCCGCCGTTGTAGTTCTATACCTCAAGATGCGGCCGCGCTTCGTGTACCTTGTCGACTACGCCTGCTTCCGCACCAAGC
CCAGCCACCGCGTCCCCTTCGGCACATTCCTCAAGCACGCCAAGCTTGTCACCTTCATTGAGGGGGCCTCGATTGACAAG
CGCATCATCCGTTTCATGA
>chr7A_1
ATTGCATGACACTTTGCATGGCATGATGTCTCAAAAGGATGTGAGGGACGAGAAGAAGCGGCAAAGCAAGGACGAGCAAA
TGAAGCAATACCTAGACCTTCAAAGGAAGAAGCTTGAGATGGAGGAGGCGGCCAAGAGGAGGAAGATCGACATGGAGGAG
GCGGCGCGACAAAGGCAGCTCGACATGGAGGAGGCGGCCCGACGAAGGCAGCTCGACATCGAGGCCGACAATGTCAAGGC
CAGGCAGAGGCAGCTCGAAATCGAGGCCACCAATGCCACCACCAAAGTGAAGGAGGTGGCCCTTGTGATCATGTGCGTGG
ACTTGTCGAAGATGAGTGAGAAGACAAGGGCCTGGTTCAAGGCCAGGAAGAAGGAGATGCTCGACGCCGAAGGCCTGAAC
TAGGTCGTCCGATCGGCCGTGGCCGTTCTTTTTGGAGGCTGGCATGGGTGCCTCCCGCCCGCTGGGCCGCTGGCTGTGTG
CTGACGAGAAAAACATTCATTTTGGAGGCCGGCTGTGTTGCCGGCCGCTGGCTGTGTTGCCGGCGAGGACAACTATTCAT
TTTGGAGGCTGGCTGTGTTGCCGGCCACTGGCTGA--TGCCGGCGATGGACGTGTAGGCCGCTGGCTCTGTTGCCGGCGT
GATGAACTGGGGCCGCTGGCCTGATGAACTAGGGCTTGGCATTTGAAAGTTG---C-TTTTTTTTAAATAGACGCGGACA
GGATGGGGCAAACGGATGCGGCAGCGCGCTGGGCGCATGGCCACCGCATCCCAGGACACGCCCGGACACGACCCCATTGC
CCTACCCAAACGGATAGAATCCGGACAAAATGGACGTCCGTTTGGGGTCGCGCGGTGGAGTTGGCCTTAT----------
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>chr4D_1
ATTGCATGACACTTTGCATGGCATGATGTCTCAAAAGGATGTGAGGGACGAGAAGAAGCGGCAAAGCAAGGACGAGAAAA
TGAAGCAATACCTAGACCTTCAAAGGAAGAAGCTTGAGATGGAGGAGGCGGCCAAGAGGAGGAAGATCGACATGGAGGAG
GCGGCCCGGCAAAGGCAGCTCGACATGGAGGAGGCGGCCCGGCAAAGGCAGCTCGACATCGAGGCCGAGAACGTCAAGGC
CAGGCAGAGGCAGCTCGACATCGAGGCCACCAATGTCGCCACCAAAGCGAAGGAGGTGGCCCTTGCGATCATGAGCGTGG
ACTTGTCGAAGATGAGCGAGAAGACGAGGGCCTGGTTCGAGGCCAGGCAGAAGGAGATGCTCGACGCCGACGGCCTGAAC
TAGGTCGTCCGATCGGCCGTGGCCGTTCTATTTGGAGGCTGGCATGGGTGCCGCCCGCCCGCTGGGCTGCTGGCTGTGTG
CCGGCGAGAAAAACATTCATTTTGGAGGCCGGCTGTGTTGCCGGCTGCTGGTTGTGTTGCCGGCGAGGACAACTATTCAT
TTTGGAGGCTGGCTGTGTTGCTGGCCACTGGCTGAGTTGCCGGTGATGGACGTGTAGGCCGCTGGCTCTGTTGCCGGCGT
GATGAACTGGGGCCGCTGGCCTGATGAACTAGGGCTTGGCATTTCAAACATTGCTC-TTTTTTTAAAATAGACGCGGACA
GGATGGGGCAAACGGATGCGGCCACGCGCTGGGCGCACGGTCACCGCATCCCAGGACACGCCCGGACACGACCCCATTGC
CCTACCCAAACGGACAGAATCCGGACAAAACGGACGTCCGTTTGGGGTCGCGTGGTGGAGTTGGCCTTA-----------
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>chr4D_1
ATTGCATGACACTTTGCATGGCATGATGTCTCAAAAGGATGTGAGGGACGAGAAGAAGCGGCAAAGCAAGGACGAGCAAA
TGAAGCAATACCTAGACTTTCAAAGGAAGAAGCTTGAGATGGAGGAGGCGGCCAAGAGGAGGAAGATCGACATGGAGGAG
GCGGCCCGACAAAGGCAGCTCGACATGGAGAAGGCGGCCCGGCAAAGGCAGCTCGACATCGAGGCCGACAATGTCAAGGC
CAGGCAGAGGCAACTCTACATCGAGGCCACCAATGCCGCCACCAAAGCGAAGGAGGTGGCCTTTGCGATCATGAGCGTGG
ACTTGTCCAAGATGAGCGAGAAGACGAGGGCCTGGTTCGAGGCCAGGCAGAAGGAGATGCTCGACGCCGACGGCCTGAAC
TAGGTCGTCCGATCGGCCGTGGCCGTTCTTTTTGGAGGCTGACATGGGTGCCGCCCGCCCGCTGGGCCGCTGGCTGTGTG
CCGGCGAGAAAAACATTCATTTTGGAGGCCGGCTATGTTGCCGGCCGCTGGCTGTGTTGCCGGCGAGGACAACTATTCAT
TTTGGAGGCTGGCTGTGTTGCCGGTCGCTGGCTGAGTTGCCGGCAATGG-------------------------------
-----ACTGGGGCCGCTGGCCTGATGAACTAGGGCTTGGCATTTGAAACGTTGCTCTTTTTTTTTAAATAGACGCGGACA
GGATAGGGCAAACGAATGCGGTCGCGCGCTAGGCGCACGGCCACCGCATCCCAGGACACGCCCGGACACGACCCCATTGT
TCTACCCAAACGGACAGAATCCGGACAAAACGGACGTCCGTTTGGGATCGCGCGGTGGAGTTGGCCTTA-----------
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>chr7B_442
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-------------------------------------------------------------TGGGCTTGTTGTCGGCGTT
AGACGAAGAGGAAAGCAGTCGAATGCACGCCGCGGAGCACGAAGATGAACGTCATTACGTGCACT-----------TTTA
ACTGAAATCGCCGTAAATACCTAGCGACGTTTCAATCCAGATGATCTCCGATCTTGTCCTTTCTT-AGACGAATAAGATC
TTGTCGTTTGGTACCATAGGGCATTCTAGAGTACACTTATATTCCTAGCGCGAGATATCTCAATTT-CCGATTCATTTCA
GCACCCTCTACTCCACTTCCTCTCATCATCAAAGTCTCCATGTAAATCGTATGGTCCCCACCTCGTTGCTCGCACAGCCA
ATGGCATTGCAAGTTGCAGGCCGCGAGATAAGCTTTCAAACCTCGATCGCACACTCGCCGCACAAGATAAGCTAGCCACA
TCGTTCATTCTAGAAACTCA--GGGAGGGCATTGCATTACACACTCGCGCACCTCACAACACCCCTCCATCCACCT-TTT
GCCAGCGTGAGAGCTTCTTCTTTCTTGCGAGGGAGAGGTC--AGCGAGCAACCAGGGAGCTAGGCGTCAATGGCGACCAT
AGCCACGATGACCATGCTCAAGCCCGCCAAGATCACGGCCAGGTCGGCGCCTTCCTCG---CCGTCGTTCAGCGCCAAGG
TGGCGTCGCCGAGCATCTCGCTGCGCAGCCTGCAGAAGAACGCGGCCAAGAAGGGAGCCCTGGCCGTGTCGCCGGCGGCC
GCGGCCATGGCGAGCGCCTTCTTCACCTCGCTGGCCTCGTCGGACGCCGCGATGGCGTCGCAGCGGATCGCGGACGTGGC
GGCGGTGGCGCCCGCGGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGGCGCCCGCGCTCGGGTGGGTGCTCTACA
ACATCCTCCAGCCGGCGCTGAACCAGCTCAATAAGATGCGGTCCGAGAAGGCGCTCGTCGCCGGGCTCGGCATCAGCGCC
GCCGCGGCCGCCGGCCTGGCCGCCGCGCCGGAGCCGGCCTCCGCCGCCGTGCAGGAGCTCGCCGCGCTGGCGGCGGTAGC
GCCCGCCGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGGCGCCCGCCCTCGGATGGGTGCTCTACAACATCCTGC
AGCCGGCGCTGAACCAGCTCAACAAAATGCGGTCCAACTGAGCGT------CGTCGTCGTCGTGGCATCGCATGCGGTCC
GGCCGAGTGGGTTCGTATGTGTGTGTTCGTCTATTAAGAGTCGTGGTAGTAGCGTGGAACGTGGTGTGAGTGCCTGCTTG
CATACTCTCTAATCTTGTTCCTTCCATTGATCAAATGCAGTACAGCTCTTCTTGTTTTCTCTTCTGCTACGTTCAGTCCA
ATGTTCTCTTCTGCTACGTTGCA-TGCTGGATTGGGTTTCTAGGGCAACTCTAATCAATCCTGTAAAAATAAAGGAGGAT
CCTTAGC------------------------------------------------------------------CAAGTGT
TTTTTTTTTACTTC------------------------------------------------------------------
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------------------------------------------------AGATTTGGCCGGTCCGAGCCGATCGGCAATAT
ATAACGGAGTTAC------TTTTCTGGTTTATGCATTTCGTGGAACAGTAATGCTACACGTACAAATGAGTTACGGAGTT
TTACAAAGAAAGTTAATTTGATGGGTCAATAGATAGGGAGGCGGTCCACCCCTCCTGAAAATCAGGAGGAAGCAAGTTTG
TGATTGGTTAGTAGATGAAAAAAGTTCGTAAACTCATGTATTTGTTTGTATGTCTATCATTTTTTTTCGTGGAACACCGT
CATGTGTGTCCGCGGCGATGCTGACCATGCCGAAAACGCCGGCGTCCGCCATCGTGCTCATGCTCGGCGAGGATGGAGGG
CTGCGTTGGGGTCGTTGTAGGGCCACCCATAGAAGTCCTCGGCCATCGCCCATGCACGTCTTCCTAGCCGCATTCCTGCC
GGCCTCCGCGGTGGTTCTGTACCTCGTGATGTAGCCGCGCTCCGTGTACCTCGTCGACTACGCTTGCTTCCACACCAAGC
CCAGCCACTGCGTCCCCTTCGGCACATTCCTCGAGCACGCCAAGCTTGTCACCTTCATTGAGGGGGGCTCCA-TGACGAG
CGCAGCGTCCGTTTCATGA
>chr7D_530
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----------------------------------------------------------------------------TTTA
ACTGAAATCACCGTAAATACCTAGCGACGTTTCAATCCAGATGATCTCCGATCTTGTCTTTTCTCGAGACGAATACGATC
TTGTCGTTTGGTACCATAGGGCATTCTAGAGTACGCTTATATTCCTACGGCGAGATATCTCAATTT-TCGACTCATTTCA
CCACTCT--ACCCTACTTCCTC---TCATCAAAGTCTCCATGTAAATCGTGTGGTCCCCACGTCGTTGCTCCCACAGCCA
ATGGCATTGCAAGTTGCAGGCCGCGAGATAAGCTTTCAAACCTCGATCGCACACTCGCTGCACAAGATAAGCTAGCCACA
TCGTTCCTTCTAGAAACGCACT-GGAGGGCATCGCATTACACACCCTCGCACCTCACACCACTCCTCCATCCACCTTTTT
GCCAGCGTGAGAGCTTCTTCTTTCTTGCGAGGGAGAGAGGGTAGCGAGCAACCAGGGAGCTAGGCGTCAATGGCGACCAT
AGCCACGATGACCATGCTCAAGCCCGCCAAGATCACGGCCAGGTCGGCGCCTTCGTCG---CCGTCGTCCAGCGCCAAGG
TGGCGTCGCCGAGCATCTCGCTGCGCAGCCTGCAGAAGAACGCGGCCAAGAAGGGAGCCCTGGCCGTGTCGCCGGCGGCC
GCGGCCATGGCGAGCGCCTTCTTCACCTCGCTGGCCTCGTCGGACGCGGCGATGGCGTCGCAGCGGATCGCGGACGTGGC
GGCGGCGGCCCCCGCGGACGACAACCGGGGCCTGCTCCTGCTCTTCGTGGTGGCGCCCGCGCTCGGGTGGGTGCTCTACA
ACATCCTCCAGCCGGCGCTGAACCAGCTCAACAAGATGCGGTCCGAGAAGGCGCTCGTCGCCGGGCTCGGCATCGGCGCC
GCCGCGGCCGCCGGCCTGGCCGCCGTGCCGGAGCCGGCCTCCGCTGCCGTGCAGGAGCTGGCCGCGCTGGCGGCGGTCGC
GCCGGCCGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGGCGCCCGCCCTCGGCTGGGTGCTCTACAACATCCTGC
AGCCGGCGCTGAACCAGCTCAACAAAATGCGATCCAACTGAGCGCGCGTA-CGTCGTCGTCGTGGCATCGCATGCGGTCC
GGCCGAGTGGGTTCGTATGTGTGTGTTCGTCTATTAAGAGTCGTGGTAGTAGCGTGGAACGTGGTGTGAGTGCCCGCTTG
CATACTCTCTAATCTTGTTCCTTCCATTGATCAAATGCAGTACAGCTCTTCTTGTTTTCTCTTCTGCTACGTTCAGTGCA
ATGTTCTCTTCTGCTACGTTCCA-TGCTGGATTGGGTTTTTAGGGCAACTCTAACCAATCCTGTAAAAATAAAGGACGAT
C-------------------------------------------------------------------------------
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>SNPs
------------------------S--S---S------------------------------------------------
--------------------------------S-----------------------------------S-----S-----
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-----------------------------------------------------------S-----S--------------
--------S-----------------------------------------------------------------------
----------------------------------------S--SS--S--S---------------SS------------
--------------------S---S----------------------------------------S------------S-
--------------------------------S--S--S-----S------------S---------------S------
----S----S------S---S-SSS---------------------------------SSSS-SSSSSSSSSSSSS----
-S------S-----------------------------------------------S-----------------------
--------S---------------------------------------------------------S-------------
--S-----------------------------------------------------------------------------
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--------------------SS----------------------------------------------------------
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----------------------------------------------------------SSS------------S------
-------S-----------------------------------------------S------------------------
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-----------S-----------------------------------------------------S-------------S
---------------------------------------------------S-----S--------S-------------
---------------------------------------------SSSSSS-----------------------------
--------------------S--S---S----------------------------------------------------
--------------------------------------------------------S-----------------------
-----------------------S------------S-------------------S-S--S-------SS---------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
S-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS-S---S----SS------
----------S-SSSSSSS----S-S---------S-----S-----S--------------------------------
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----S-----SSS-S--S--S-----SSSSSS-SSS-SSS-S-S--SS--------------------------------
------------------------------------------S--------------S----S--S-----S--------
----S---SS--S-----S------SS----SS--------S---------S-----------S-------S--------
--------S-----------------------S---------------------------------S---S-S----S--
----S-S------------
>forward_956
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--------------------------------------------------------ACCGTGAACACCTAGCGATG----
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>reverse_2416
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---------------GTATCTTACCGGCCAGGAGC---------------------------------------------
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