Multiple sequence alignment - TraesCS7A01G293700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G293700 chr7A 100.000 3102 0 0 1 3102 376868867 376871968 0.000000e+00 5729.0
1 TraesCS7A01G293700 chr7A 89.441 161 14 2 645 802 102293277 102293437 1.890000e-47 200.0
2 TraesCS7A01G293700 chr4A 92.506 814 60 1 1757 2569 418662760 418663573 0.000000e+00 1164.0
3 TraesCS7A01G293700 chr4A 94.444 468 21 3 2634 3101 418663574 418664036 0.000000e+00 715.0
4 TraesCS7A01G293700 chr4A 90.275 473 44 2 1291 1762 418645183 418645654 4.400000e-173 617.0
5 TraesCS7A01G293700 chr4A 89.151 424 44 1 832 1253 418644756 418645179 7.620000e-146 527.0
6 TraesCS7A01G293700 chr7D 89.385 650 53 3 1698 2331 89293028 89293677 0.000000e+00 804.0
7 TraesCS7A01G293700 chr7D 87.050 556 66 5 1 553 348997330 348996778 9.450000e-175 623.0
8 TraesCS7A01G293700 chr7D 89.109 303 18 10 1421 1708 89292696 89292998 2.270000e-96 363.0
9 TraesCS7A01G293700 chr7D 88.793 116 12 1 2461 2575 6923806 6923921 1.160000e-29 141.0
10 TraesCS7A01G293700 chr1D 88.129 556 60 5 1 553 278490096 278490648 0.000000e+00 656.0
11 TraesCS7A01G293700 chr1D 88.136 118 10 3 2461 2575 38749934 38750050 1.500000e-28 137.0
12 TraesCS7A01G293700 chr6D 87.433 557 61 6 1 553 138878657 138879208 1.570000e-177 632.0
13 TraesCS7A01G293700 chr6D 87.074 557 63 7 1 553 359231268 359231819 3.400000e-174 621.0
14 TraesCS7A01G293700 chr6D 87.097 558 61 7 1 552 450217389 450216837 3.400000e-174 621.0
15 TraesCS7A01G293700 chr6D 78.506 549 79 27 2567 3095 21373524 21372995 1.070000e-84 324.0
16 TraesCS7A01G293700 chr6D 77.408 571 64 21 2563 3095 20950662 20951205 2.360000e-71 279.0
17 TraesCS7A01G293700 chr6D 89.565 115 12 0 2461 2575 121282432 121282546 2.490000e-31 147.0
18 TraesCS7A01G293700 chr6D 88.696 115 13 0 2461 2575 426526231 426526117 1.160000e-29 141.0
19 TraesCS7A01G293700 chr6D 83.962 106 13 3 553 654 212675155 212675260 7.080000e-17 99.0
20 TraesCS7A01G293700 chr1A 87.276 558 60 10 1 553 433762668 433762117 7.300000e-176 627.0
21 TraesCS7A01G293700 chr1A 86.823 554 70 3 1 553 141428572 141428021 1.580000e-172 616.0
22 TraesCS7A01G293700 chr2D 86.918 558 66 6 1 555 300538667 300538114 1.220000e-173 619.0
23 TraesCS7A01G293700 chr2D 78.080 552 86 23 2567 3095 24685806 24685267 1.800000e-82 316.0
24 TraesCS7A01G293700 chr2D 87.826 115 14 0 2461 2575 502963315 502963429 5.400000e-28 135.0
25 TraesCS7A01G293700 chr1B 87.027 555 64 7 3 553 378281144 378281694 1.220000e-173 619.0
26 TraesCS7A01G293700 chr3D 90.052 191 13 4 619 803 80954876 80955066 3.090000e-60 243.0
27 TraesCS7A01G293700 chr3D 88.696 115 13 0 2461 2575 23560408 23560294 1.160000e-29 141.0
28 TraesCS7A01G293700 chr3D 87.826 115 14 0 2461 2575 448526691 448526805 5.400000e-28 135.0
29 TraesCS7A01G293700 chr3D 90.000 50 1 4 2399 2444 597922482 597922433 9.290000e-06 62.1
30 TraesCS7A01G293700 chr3D 94.737 38 2 0 2399 2436 429043548 429043511 3.340000e-05 60.2
31 TraesCS7A01G293700 chr6B 78.962 366 62 14 2567 2926 36054823 36054467 5.170000e-58 235.0
32 TraesCS7A01G293700 chr6B 94.737 38 2 0 2399 2436 440581377 440581414 3.340000e-05 60.2
33 TraesCS7A01G293700 chr4D 89.565 115 12 0 2461 2575 460961834 460961948 2.490000e-31 147.0
34 TraesCS7A01G293700 chr4D 100.000 29 0 0 2408 2436 67277380 67277408 2.000000e-03 54.7
35 TraesCS7A01G293700 chr4B 77.289 273 33 14 549 801 591501358 591501621 1.940000e-27 134.0
36 TraesCS7A01G293700 chr2A 78.238 193 34 8 614 802 606805889 606805701 1.950000e-22 117.0
37 TraesCS7A01G293700 chr2A 94.595 37 2 0 2400 2436 488857292 488857328 1.200000e-04 58.4
38 TraesCS7A01G293700 chr3B 76.336 262 35 12 2688 2928 586433350 586433095 7.030000e-22 115.0
39 TraesCS7A01G293700 chr7B 75.373 268 40 11 2681 2927 723391369 723391631 4.230000e-19 106.0
40 TraesCS7A01G293700 chr5B 98.000 50 1 0 554 603 430285088 430285039 1.530000e-13 87.9
41 TraesCS7A01G293700 chr5D 94.872 39 2 0 2398 2436 11299564 11299526 9.290000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G293700 chr7A 376868867 376871968 3101 False 5729.0 5729 100.000 1 3102 1 chr7A.!!$F2 3101
1 TraesCS7A01G293700 chr4A 418662760 418664036 1276 False 939.5 1164 93.475 1757 3101 2 chr4A.!!$F2 1344
2 TraesCS7A01G293700 chr4A 418644756 418645654 898 False 572.0 617 89.713 832 1762 2 chr4A.!!$F1 930
3 TraesCS7A01G293700 chr7D 348996778 348997330 552 True 623.0 623 87.050 1 553 1 chr7D.!!$R1 552
4 TraesCS7A01G293700 chr7D 89292696 89293677 981 False 583.5 804 89.247 1421 2331 2 chr7D.!!$F2 910
5 TraesCS7A01G293700 chr1D 278490096 278490648 552 False 656.0 656 88.129 1 553 1 chr1D.!!$F2 552
6 TraesCS7A01G293700 chr6D 138878657 138879208 551 False 632.0 632 87.433 1 553 1 chr6D.!!$F3 552
7 TraesCS7A01G293700 chr6D 359231268 359231819 551 False 621.0 621 87.074 1 553 1 chr6D.!!$F5 552
8 TraesCS7A01G293700 chr6D 450216837 450217389 552 True 621.0 621 87.097 1 552 1 chr6D.!!$R3 551
9 TraesCS7A01G293700 chr6D 21372995 21373524 529 True 324.0 324 78.506 2567 3095 1 chr6D.!!$R1 528
10 TraesCS7A01G293700 chr6D 20950662 20951205 543 False 279.0 279 77.408 2563 3095 1 chr6D.!!$F1 532
11 TraesCS7A01G293700 chr1A 433762117 433762668 551 True 627.0 627 87.276 1 553 1 chr1A.!!$R2 552
12 TraesCS7A01G293700 chr1A 141428021 141428572 551 True 616.0 616 86.823 1 553 1 chr1A.!!$R1 552
13 TraesCS7A01G293700 chr2D 300538114 300538667 553 True 619.0 619 86.918 1 555 1 chr2D.!!$R2 554
14 TraesCS7A01G293700 chr2D 24685267 24685806 539 True 316.0 316 78.080 2567 3095 1 chr2D.!!$R1 528
15 TraesCS7A01G293700 chr1B 378281144 378281694 550 False 619.0 619 87.027 3 553 1 chr1B.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 638 0.032615 TCCACCACTTTTGCTGGGTT 60.033 50.0 0.0 0.0 32.45 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2571 2658 0.250858 TGCAAAGCAAGCTAGGAGCA 60.251 50.0 0.64 0.96 37.38 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 42 2.455032 GCTAGCTACATCTCACACACG 58.545 52.381 7.70 0.00 0.00 4.49
40 43 2.097629 GCTAGCTACATCTCACACACGA 59.902 50.000 7.70 0.00 0.00 4.35
63 67 3.933332 GGGTTTGATCGACTTCAGTAAGG 59.067 47.826 0.00 0.00 37.01 2.69
115 119 2.284112 AAGGAGTCGGCCGGGTTA 60.284 61.111 27.83 1.61 0.00 2.85
126 130 0.675522 GCCGGGTTAAGTTAGCAGCA 60.676 55.000 2.18 0.00 0.00 4.41
174 178 3.991999 GCAGCAGGCAATCACTCA 58.008 55.556 0.00 0.00 43.97 3.41
181 185 2.507484 CAGGCAATCACTCAGGTTCAA 58.493 47.619 0.00 0.00 0.00 2.69
185 190 4.702131 AGGCAATCACTCAGGTTCAATAAC 59.298 41.667 0.00 0.00 34.66 1.89
211 216 1.137825 CTCTCGCTCGGGTTCAGTC 59.862 63.158 0.00 0.00 0.00 3.51
234 239 4.961511 GACACGGCTCGCACCACA 62.962 66.667 0.00 0.00 0.00 4.17
237 242 4.314440 ACGGCTCGCACCACATGT 62.314 61.111 0.00 0.00 0.00 3.21
496 509 8.233868 TGTTTTTGTCACAATTATCGTCATAGG 58.766 33.333 0.00 0.00 0.00 2.57
555 569 7.715657 TGGCCAAAATTTCATAGATGTGTATC 58.284 34.615 0.61 0.00 0.00 2.24
556 570 7.560991 TGGCCAAAATTTCATAGATGTGTATCT 59.439 33.333 0.61 0.00 45.45 1.98
557 571 8.078596 GGCCAAAATTTCATAGATGTGTATCTC 58.921 37.037 0.00 0.00 42.60 2.75
558 572 8.844244 GCCAAAATTTCATAGATGTGTATCTCT 58.156 33.333 0.00 0.00 42.60 3.10
564 578 9.821240 ATTTCATAGATGTGTATCTCTACTCCT 57.179 33.333 0.00 0.00 42.60 3.69
570 584 8.630054 AGATGTGTATCTCTACTCCTAATGTC 57.370 38.462 0.00 0.00 39.46 3.06
571 585 7.668052 AGATGTGTATCTCTACTCCTAATGTCC 59.332 40.741 0.00 0.00 39.46 4.02
572 586 5.763698 TGTGTATCTCTACTCCTAATGTCCG 59.236 44.000 0.00 0.00 0.00 4.79
573 587 5.996513 GTGTATCTCTACTCCTAATGTCCGA 59.003 44.000 0.00 0.00 0.00 4.55
574 588 6.148150 GTGTATCTCTACTCCTAATGTCCGAG 59.852 46.154 0.00 0.00 0.00 4.63
575 589 4.774660 TCTCTACTCCTAATGTCCGAGT 57.225 45.455 0.00 0.00 40.00 4.18
576 590 5.113446 TCTCTACTCCTAATGTCCGAGTT 57.887 43.478 0.00 0.00 37.93 3.01
577 591 4.882427 TCTCTACTCCTAATGTCCGAGTTG 59.118 45.833 0.00 0.00 37.93 3.16
578 592 3.952323 TCTACTCCTAATGTCCGAGTTGG 59.048 47.826 0.00 0.00 37.93 3.77
579 593 2.537143 ACTCCTAATGTCCGAGTTGGT 58.463 47.619 0.00 0.00 39.52 3.67
580 594 2.233922 ACTCCTAATGTCCGAGTTGGTG 59.766 50.000 0.00 0.00 39.52 4.17
581 595 2.496070 CTCCTAATGTCCGAGTTGGTGA 59.504 50.000 0.00 0.00 39.52 4.02
582 596 2.901192 TCCTAATGTCCGAGTTGGTGAA 59.099 45.455 0.00 0.00 39.52 3.18
583 597 3.517901 TCCTAATGTCCGAGTTGGTGAAT 59.482 43.478 0.00 0.00 39.52 2.57
584 598 4.712829 TCCTAATGTCCGAGTTGGTGAATA 59.287 41.667 0.00 0.00 39.52 1.75
585 599 5.050490 CCTAATGTCCGAGTTGGTGAATAG 58.950 45.833 0.00 0.00 39.52 1.73
586 600 2.380084 TGTCCGAGTTGGTGAATAGC 57.620 50.000 0.00 0.00 39.52 2.97
587 601 1.066430 TGTCCGAGTTGGTGAATAGCC 60.066 52.381 0.00 0.00 39.52 3.93
588 602 1.207329 GTCCGAGTTGGTGAATAGCCT 59.793 52.381 0.00 0.00 39.52 4.58
589 603 1.480954 TCCGAGTTGGTGAATAGCCTC 59.519 52.381 0.00 0.00 39.52 4.70
590 604 1.473434 CCGAGTTGGTGAATAGCCTCC 60.473 57.143 0.00 0.00 0.00 4.30
591 605 1.207089 CGAGTTGGTGAATAGCCTCCA 59.793 52.381 0.00 0.00 0.00 3.86
592 606 2.158900 CGAGTTGGTGAATAGCCTCCAT 60.159 50.000 0.00 0.00 30.78 3.41
593 607 3.209410 GAGTTGGTGAATAGCCTCCATG 58.791 50.000 0.00 0.00 30.78 3.66
594 608 2.092212 AGTTGGTGAATAGCCTCCATGG 60.092 50.000 4.97 4.97 39.35 3.66
595 609 1.595311 TGGTGAATAGCCTCCATGGT 58.405 50.000 12.58 0.00 38.35 3.55
596 610 1.922447 TGGTGAATAGCCTCCATGGTT 59.078 47.619 12.58 0.00 38.35 3.67
597 611 2.311542 TGGTGAATAGCCTCCATGGTTT 59.688 45.455 12.58 0.00 38.35 3.27
598 612 3.525609 TGGTGAATAGCCTCCATGGTTTA 59.474 43.478 12.58 0.88 38.35 2.01
599 613 4.167892 TGGTGAATAGCCTCCATGGTTTAT 59.832 41.667 12.58 3.25 38.35 1.40
600 614 5.140454 GGTGAATAGCCTCCATGGTTTATT 58.860 41.667 12.58 11.18 38.35 1.40
601 615 5.598417 GGTGAATAGCCTCCATGGTTTATTT 59.402 40.000 12.58 0.02 38.35 1.40
602 616 6.098266 GGTGAATAGCCTCCATGGTTTATTTT 59.902 38.462 12.58 0.56 38.35 1.82
603 617 7.364673 GGTGAATAGCCTCCATGGTTTATTTTT 60.365 37.037 12.58 0.00 38.35 1.94
604 618 7.492344 GTGAATAGCCTCCATGGTTTATTTTTG 59.508 37.037 12.58 0.00 38.35 2.44
605 619 7.180051 TGAATAGCCTCCATGGTTTATTTTTGT 59.820 33.333 12.58 0.00 38.35 2.83
606 620 5.405935 AGCCTCCATGGTTTATTTTTGTC 57.594 39.130 12.58 0.00 38.35 3.18
607 621 4.222810 AGCCTCCATGGTTTATTTTTGTCC 59.777 41.667 12.58 0.00 38.35 4.02
608 622 4.020662 GCCTCCATGGTTTATTTTTGTCCA 60.021 41.667 12.58 0.00 38.35 4.02
609 623 5.478407 CCTCCATGGTTTATTTTTGTCCAC 58.522 41.667 12.58 0.00 0.00 4.02
610 624 5.476091 TCCATGGTTTATTTTTGTCCACC 57.524 39.130 12.58 0.00 0.00 4.61
611 625 4.901849 TCCATGGTTTATTTTTGTCCACCA 59.098 37.500 12.58 0.00 38.64 4.17
612 626 4.994217 CCATGGTTTATTTTTGTCCACCAC 59.006 41.667 2.57 0.00 37.13 4.16
613 627 5.221621 CCATGGTTTATTTTTGTCCACCACT 60.222 40.000 2.57 0.00 37.13 4.00
614 628 5.941555 TGGTTTATTTTTGTCCACCACTT 57.058 34.783 0.00 0.00 29.11 3.16
615 629 6.301169 TGGTTTATTTTTGTCCACCACTTT 57.699 33.333 0.00 0.00 29.11 2.66
616 630 6.712276 TGGTTTATTTTTGTCCACCACTTTT 58.288 32.000 0.00 0.00 29.11 2.27
617 631 6.595716 TGGTTTATTTTTGTCCACCACTTTTG 59.404 34.615 0.00 0.00 29.11 2.44
618 632 6.457663 GGTTTATTTTTGTCCACCACTTTTGC 60.458 38.462 0.00 0.00 0.00 3.68
619 633 3.971245 TTTTTGTCCACCACTTTTGCT 57.029 38.095 0.00 0.00 0.00 3.91
620 634 2.957491 TTTGTCCACCACTTTTGCTG 57.043 45.000 0.00 0.00 0.00 4.41
621 635 1.110442 TTGTCCACCACTTTTGCTGG 58.890 50.000 0.00 0.00 34.62 4.85
622 636 0.754957 TGTCCACCACTTTTGCTGGG 60.755 55.000 0.00 0.00 32.45 4.45
623 637 0.755327 GTCCACCACTTTTGCTGGGT 60.755 55.000 0.00 0.00 32.45 4.51
624 638 0.032615 TCCACCACTTTTGCTGGGTT 60.033 50.000 0.00 0.00 32.45 4.11
625 639 0.829990 CCACCACTTTTGCTGGGTTT 59.170 50.000 0.00 0.00 32.45 3.27
626 640 1.209261 CCACCACTTTTGCTGGGTTTT 59.791 47.619 0.00 0.00 32.45 2.43
627 641 2.355615 CCACCACTTTTGCTGGGTTTTT 60.356 45.455 0.00 0.00 32.45 1.94
642 656 3.543112 TTTTTGTCCCCCTCCCAAC 57.457 52.632 0.00 0.00 0.00 3.77
643 657 0.637195 TTTTTGTCCCCCTCCCAACA 59.363 50.000 0.00 0.00 0.00 3.33
644 658 0.105913 TTTTGTCCCCCTCCCAACAC 60.106 55.000 0.00 0.00 0.00 3.32
645 659 2.014033 TTTGTCCCCCTCCCAACACC 62.014 60.000 0.00 0.00 0.00 4.16
646 660 3.658422 GTCCCCCTCCCAACACCC 61.658 72.222 0.00 0.00 0.00 4.61
649 663 3.339093 CCCCTCCCAACACCCCTC 61.339 72.222 0.00 0.00 0.00 4.30
650 664 3.339093 CCCTCCCAACACCCCTCC 61.339 72.222 0.00 0.00 0.00 4.30
651 665 3.339093 CCTCCCAACACCCCTCCC 61.339 72.222 0.00 0.00 0.00 4.30
652 666 2.531685 CTCCCAACACCCCTCCCA 60.532 66.667 0.00 0.00 0.00 4.37
653 667 2.856988 TCCCAACACCCCTCCCAC 60.857 66.667 0.00 0.00 0.00 4.61
654 668 2.858974 CCCAACACCCCTCCCACT 60.859 66.667 0.00 0.00 0.00 4.00
655 669 2.436109 CCAACACCCCTCCCACTG 59.564 66.667 0.00 0.00 0.00 3.66
656 670 2.436109 CAACACCCCTCCCACTGG 59.564 66.667 0.00 0.00 0.00 4.00
657 671 2.038762 AACACCCCTCCCACTGGT 60.039 61.111 0.00 0.00 0.00 4.00
658 672 1.699930 AACACCCCTCCCACTGGTT 60.700 57.895 0.00 0.00 0.00 3.67
659 673 1.293683 AACACCCCTCCCACTGGTTT 61.294 55.000 0.00 0.00 0.00 3.27
660 674 0.402272 ACACCCCTCCCACTGGTTTA 60.402 55.000 0.00 0.00 0.00 2.01
661 675 0.999712 CACCCCTCCCACTGGTTTAT 59.000 55.000 0.00 0.00 0.00 1.40
662 676 1.357761 CACCCCTCCCACTGGTTTATT 59.642 52.381 0.00 0.00 0.00 1.40
663 677 2.078611 ACCCCTCCCACTGGTTTATTT 58.921 47.619 0.00 0.00 0.00 1.40
664 678 2.453212 ACCCCTCCCACTGGTTTATTTT 59.547 45.455 0.00 0.00 0.00 1.82
665 679 3.096852 CCCCTCCCACTGGTTTATTTTC 58.903 50.000 0.00 0.00 0.00 2.29
666 680 3.501385 CCCCTCCCACTGGTTTATTTTCA 60.501 47.826 0.00 0.00 0.00 2.69
667 681 3.509967 CCCTCCCACTGGTTTATTTTCAC 59.490 47.826 0.00 0.00 0.00 3.18
668 682 4.148838 CCTCCCACTGGTTTATTTTCACA 58.851 43.478 0.00 0.00 0.00 3.58
669 683 4.772100 CCTCCCACTGGTTTATTTTCACAT 59.228 41.667 0.00 0.00 0.00 3.21
670 684 5.105756 CCTCCCACTGGTTTATTTTCACATC 60.106 44.000 0.00 0.00 0.00 3.06
671 685 5.389520 TCCCACTGGTTTATTTTCACATCA 58.610 37.500 0.00 0.00 0.00 3.07
672 686 5.242838 TCCCACTGGTTTATTTTCACATCAC 59.757 40.000 0.00 0.00 0.00 3.06
673 687 5.469479 CCACTGGTTTATTTTCACATCACC 58.531 41.667 0.00 0.00 0.00 4.02
674 688 5.243730 CCACTGGTTTATTTTCACATCACCT 59.756 40.000 0.00 0.00 0.00 4.00
675 689 6.381801 CACTGGTTTATTTTCACATCACCTC 58.618 40.000 0.00 0.00 0.00 3.85
676 690 6.207417 CACTGGTTTATTTTCACATCACCTCT 59.793 38.462 0.00 0.00 0.00 3.69
677 691 6.431234 ACTGGTTTATTTTCACATCACCTCTC 59.569 38.462 0.00 0.00 0.00 3.20
678 692 6.303054 TGGTTTATTTTCACATCACCTCTCA 58.697 36.000 0.00 0.00 0.00 3.27
679 693 6.206634 TGGTTTATTTTCACATCACCTCTCAC 59.793 38.462 0.00 0.00 0.00 3.51
680 694 6.206634 GGTTTATTTTCACATCACCTCTCACA 59.793 38.462 0.00 0.00 0.00 3.58
681 695 6.801539 TTATTTTCACATCACCTCTCACAC 57.198 37.500 0.00 0.00 0.00 3.82
682 696 3.836365 TTTCACATCACCTCTCACACA 57.164 42.857 0.00 0.00 0.00 3.72
683 697 3.836365 TTCACATCACCTCTCACACAA 57.164 42.857 0.00 0.00 0.00 3.33
684 698 4.356405 TTCACATCACCTCTCACACAAT 57.644 40.909 0.00 0.00 0.00 2.71
685 699 3.930336 TCACATCACCTCTCACACAATC 58.070 45.455 0.00 0.00 0.00 2.67
686 700 2.669924 CACATCACCTCTCACACAATCG 59.330 50.000 0.00 0.00 0.00 3.34
687 701 2.274437 CATCACCTCTCACACAATCGG 58.726 52.381 0.00 0.00 0.00 4.18
688 702 1.627864 TCACCTCTCACACAATCGGA 58.372 50.000 0.00 0.00 0.00 4.55
689 703 1.967779 TCACCTCTCACACAATCGGAA 59.032 47.619 0.00 0.00 0.00 4.30
690 704 2.367241 TCACCTCTCACACAATCGGAAA 59.633 45.455 0.00 0.00 0.00 3.13
691 705 3.138304 CACCTCTCACACAATCGGAAAA 58.862 45.455 0.00 0.00 0.00 2.29
692 706 3.563808 CACCTCTCACACAATCGGAAAAA 59.436 43.478 0.00 0.00 0.00 1.94
693 707 4.216257 CACCTCTCACACAATCGGAAAAAT 59.784 41.667 0.00 0.00 0.00 1.82
694 708 5.411361 CACCTCTCACACAATCGGAAAAATA 59.589 40.000 0.00 0.00 0.00 1.40
695 709 6.094048 CACCTCTCACACAATCGGAAAAATAT 59.906 38.462 0.00 0.00 0.00 1.28
696 710 7.279981 CACCTCTCACACAATCGGAAAAATATA 59.720 37.037 0.00 0.00 0.00 0.86
697 711 7.827236 ACCTCTCACACAATCGGAAAAATATAA 59.173 33.333 0.00 0.00 0.00 0.98
698 712 8.673711 CCTCTCACACAATCGGAAAAATATAAA 58.326 33.333 0.00 0.00 0.00 1.40
699 713 9.490663 CTCTCACACAATCGGAAAAATATAAAC 57.509 33.333 0.00 0.00 0.00 2.01
700 714 9.004717 TCTCACACAATCGGAAAAATATAAACA 57.995 29.630 0.00 0.00 0.00 2.83
701 715 9.277565 CTCACACAATCGGAAAAATATAAACAG 57.722 33.333 0.00 0.00 0.00 3.16
702 716 9.004717 TCACACAATCGGAAAAATATAAACAGA 57.995 29.630 0.00 0.00 0.00 3.41
703 717 9.787532 CACACAATCGGAAAAATATAAACAGAT 57.212 29.630 0.00 0.00 0.00 2.90
710 724 9.667107 TCGGAAAAATATAAACAGATCAGAACT 57.333 29.630 0.00 0.00 0.00 3.01
720 734 6.981762 AACAGATCAGAACTTTCTATGCAG 57.018 37.500 0.00 0.00 35.34 4.41
721 735 5.426504 ACAGATCAGAACTTTCTATGCAGG 58.573 41.667 0.00 0.00 35.34 4.85
722 736 5.046014 ACAGATCAGAACTTTCTATGCAGGT 60.046 40.000 0.00 0.00 35.34 4.00
723 737 5.293814 CAGATCAGAACTTTCTATGCAGGTG 59.706 44.000 0.00 0.00 35.34 4.00
724 738 3.338249 TCAGAACTTTCTATGCAGGTGC 58.662 45.455 0.00 0.00 37.38 5.01
725 739 3.076621 CAGAACTTTCTATGCAGGTGCA 58.923 45.455 7.19 7.19 45.38 4.57
726 740 3.503363 CAGAACTTTCTATGCAGGTGCAA 59.497 43.478 9.06 0.00 44.83 4.08
727 741 4.614535 CAGAACTTTCTATGCAGGTGCAAC 60.615 45.833 9.06 0.00 44.83 4.17
728 742 6.772452 CAGAACTTTCTATGCAGGTGCAACT 61.772 44.000 9.06 0.00 44.83 3.16
729 743 8.173410 CAGAACTTTCTATGCAGGTGCAACTT 62.173 42.308 0.00 0.00 44.83 2.66
730 744 8.908436 CAGAACTTTCTATGCAGGTGCAACTTA 61.908 40.741 0.00 0.00 44.83 2.24
741 755 6.852664 GCAGGTGCAACTTATTTAGTAATGT 58.147 36.000 0.00 0.00 41.59 2.71
742 756 6.967199 GCAGGTGCAACTTATTTAGTAATGTC 59.033 38.462 0.00 0.00 41.59 3.06
743 757 7.148239 GCAGGTGCAACTTATTTAGTAATGTCT 60.148 37.037 0.00 0.00 41.59 3.41
744 758 8.730680 CAGGTGCAACTTATTTAGTAATGTCTT 58.269 33.333 0.00 0.00 35.54 3.01
745 759 9.297037 AGGTGCAACTTATTTAGTAATGTCTTT 57.703 29.630 0.00 0.00 35.54 2.52
765 779 9.108284 TGTCTTTATATGCGAAAGAATCAATCA 57.892 29.630 1.56 0.00 42.88 2.57
766 780 9.374960 GTCTTTATATGCGAAAGAATCAATCAC 57.625 33.333 1.56 0.00 42.88 3.06
767 781 9.108284 TCTTTATATGCGAAAGAATCAATCACA 57.892 29.630 0.00 0.00 39.40 3.58
768 782 9.720667 CTTTATATGCGAAAGAATCAATCACAA 57.279 29.630 0.00 0.00 36.22 3.33
774 788 8.619146 TGCGAAAGAATCAATCACAATAAATC 57.381 30.769 0.00 0.00 0.00 2.17
775 789 8.461222 TGCGAAAGAATCAATCACAATAAATCT 58.539 29.630 0.00 0.00 0.00 2.40
776 790 9.294030 GCGAAAGAATCAATCACAATAAATCTT 57.706 29.630 0.00 0.00 0.00 2.40
785 799 9.513906 TCAATCACAATAAATCTTTGTAGACCA 57.486 29.630 0.00 0.00 35.61 4.02
822 836 9.559958 AATTAACAATTCGTTCAATCACATCTC 57.440 29.630 0.00 0.00 39.14 2.75
823 837 6.808008 AACAATTCGTTCAATCACATCTCT 57.192 33.333 0.00 0.00 29.27 3.10
824 838 7.905604 AACAATTCGTTCAATCACATCTCTA 57.094 32.000 0.00 0.00 29.27 2.43
825 839 7.295952 ACAATTCGTTCAATCACATCTCTAC 57.704 36.000 0.00 0.00 0.00 2.59
826 840 7.099764 ACAATTCGTTCAATCACATCTCTACT 58.900 34.615 0.00 0.00 0.00 2.57
827 841 8.251026 ACAATTCGTTCAATCACATCTCTACTA 58.749 33.333 0.00 0.00 0.00 1.82
828 842 8.535592 CAATTCGTTCAATCACATCTCTACTAC 58.464 37.037 0.00 0.00 0.00 2.73
829 843 6.132791 TCGTTCAATCACATCTCTACTACC 57.867 41.667 0.00 0.00 0.00 3.18
830 844 5.886474 TCGTTCAATCACATCTCTACTACCT 59.114 40.000 0.00 0.00 0.00 3.08
837 851 9.653287 CAATCACATCTCTACTACCTAAAAACA 57.347 33.333 0.00 0.00 0.00 2.83
856 870 3.074412 ACACGTAGCATTCCTTTTCCTG 58.926 45.455 0.00 0.00 0.00 3.86
878 892 4.821589 GCGTCCTGCCTCCCTTCG 62.822 72.222 0.00 0.00 37.76 3.79
895 909 3.225061 GTCGATCGTCCCCCTCCC 61.225 72.222 15.94 0.00 0.00 4.30
910 924 0.600255 CTCCCGCACACGAGAAAAGT 60.600 55.000 0.00 0.00 43.93 2.66
946 960 1.683938 CCCATACCGTTTTCTTCCCCC 60.684 57.143 0.00 0.00 0.00 5.40
954 968 2.701107 GTTTTCTTCCCCCTCTCTTCG 58.299 52.381 0.00 0.00 0.00 3.79
956 970 0.252284 TTCTTCCCCCTCTCTTCGCT 60.252 55.000 0.00 0.00 0.00 4.93
959 973 0.629596 TTCCCCCTCTCTTCGCTCTA 59.370 55.000 0.00 0.00 0.00 2.43
963 977 2.104170 CCCCTCTCTTCGCTCTAGTTT 58.896 52.381 0.00 0.00 0.00 2.66
991 1005 1.383109 ACCAGATCAGATCCCGCCA 60.383 57.895 6.80 0.00 0.00 5.69
993 1007 1.070445 CAGATCAGATCCCGCCACC 59.930 63.158 6.80 0.00 0.00 4.61
1052 1068 3.411517 ACCCATCGCCCTCCCTTG 61.412 66.667 0.00 0.00 0.00 3.61
1062 1078 0.820871 CCCTCCCTTGTTCTCTCTCG 59.179 60.000 0.00 0.00 0.00 4.04
1067 1083 1.480137 CCCTTGTTCTCTCTCGCTCAT 59.520 52.381 0.00 0.00 0.00 2.90
1108 1124 1.407258 CTCCTTCTCCCGTGATCTCAC 59.593 57.143 0.07 0.07 43.15 3.51
1116 1132 2.951745 GTGATCTCACGCTCGCCG 60.952 66.667 0.00 0.00 44.21 6.46
1117 1133 4.854784 TGATCTCACGCTCGCCGC 62.855 66.667 0.00 0.00 41.76 6.53
1146 1162 1.208293 CCTTTCTTTCCCTCCCTCTCG 59.792 57.143 0.00 0.00 0.00 4.04
1149 1165 1.219393 CTTTCCCTCCCTCTCGCAC 59.781 63.158 0.00 0.00 0.00 5.34
1150 1166 1.535444 TTTCCCTCCCTCTCGCACA 60.535 57.895 0.00 0.00 0.00 4.57
1173 1189 1.450312 CCGGTGAGATGGAGCCAAC 60.450 63.158 0.00 0.00 0.00 3.77
1174 1190 1.450312 CGGTGAGATGGAGCCAACC 60.450 63.158 0.00 0.00 0.00 3.77
1177 1193 0.326264 GTGAGATGGAGCCAACCTGT 59.674 55.000 0.00 0.00 0.00 4.00
1180 1196 2.642311 TGAGATGGAGCCAACCTGTTAA 59.358 45.455 0.00 0.00 0.00 2.01
1182 1198 3.421844 AGATGGAGCCAACCTGTTAAAC 58.578 45.455 0.00 0.00 0.00 2.01
1183 1199 3.074538 AGATGGAGCCAACCTGTTAAACT 59.925 43.478 0.00 0.00 0.00 2.66
1195 1211 4.468153 ACCTGTTAAACTGGAGGAGATCTC 59.532 45.833 14.75 14.75 39.29 2.75
1208 1224 2.415168 GGAGATCTCTATCGCGAGTCTG 59.585 54.545 21.81 5.27 37.19 3.51
1222 1238 1.373497 GTCTGTGCGACCCAGTCAG 60.373 63.158 0.00 0.00 36.62 3.51
1227 1243 0.737715 GTGCGACCCAGTCAGACATC 60.738 60.000 2.66 0.00 32.09 3.06
1234 1250 1.212751 CAGTCAGACATCGCCACGA 59.787 57.895 2.66 0.00 41.13 4.35
1238 1254 0.101219 TCAGACATCGCCACGATCAG 59.899 55.000 0.00 0.00 45.19 2.90
1244 1260 1.387295 ATCGCCACGATCAGCTCTCA 61.387 55.000 0.00 0.00 43.45 3.27
1253 1269 1.071857 GATCAGCTCTCATGGGCATCA 59.928 52.381 0.00 0.00 0.00 3.07
1265 1281 2.190313 GCATCATGCACGGGAGGA 59.810 61.111 4.20 0.00 44.26 3.71
1266 1282 1.228063 GCATCATGCACGGGAGGAT 60.228 57.895 4.20 0.00 44.26 3.24
1267 1283 1.233285 GCATCATGCACGGGAGGATC 61.233 60.000 4.20 0.00 44.26 3.36
1268 1284 0.107268 CATCATGCACGGGAGGATCA 59.893 55.000 0.00 0.00 36.25 2.92
1269 1285 0.107456 ATCATGCACGGGAGGATCAC 59.893 55.000 0.00 0.00 36.25 3.06
1270 1286 1.524621 CATGCACGGGAGGATCACC 60.525 63.158 0.00 0.00 32.04 4.02
1271 1287 1.995066 ATGCACGGGAGGATCACCA 60.995 57.895 9.76 0.00 32.04 4.17
1272 1288 1.561769 ATGCACGGGAGGATCACCAA 61.562 55.000 9.76 0.00 32.04 3.67
1273 1289 1.224592 GCACGGGAGGATCACCAAT 59.775 57.895 9.76 0.00 32.04 3.16
1274 1290 0.815615 GCACGGGAGGATCACCAATC 60.816 60.000 9.76 0.00 32.04 2.67
1275 1291 0.833287 CACGGGAGGATCACCAATCT 59.167 55.000 9.76 0.00 32.04 2.40
1276 1292 0.833287 ACGGGAGGATCACCAATCTG 59.167 55.000 9.76 0.00 32.04 2.90
1277 1293 0.107456 CGGGAGGATCACCAATCTGG 59.893 60.000 9.76 0.00 45.02 3.86
1278 1294 0.179006 GGGAGGATCACCAATCTGGC 60.179 60.000 9.76 0.00 42.67 4.85
1279 1295 0.548031 GGAGGATCACCAATCTGGCA 59.452 55.000 0.00 0.00 42.67 4.92
1280 1296 1.476471 GGAGGATCACCAATCTGGCAG 60.476 57.143 8.58 8.58 42.67 4.85
1281 1297 1.487976 GAGGATCACCAATCTGGCAGA 59.512 52.381 21.19 21.19 42.67 4.26
1282 1298 1.211457 AGGATCACCAATCTGGCAGAC 59.789 52.381 21.37 4.01 42.67 3.51
1283 1299 1.211457 GGATCACCAATCTGGCAGACT 59.789 52.381 21.37 5.81 42.67 3.24
1284 1300 2.356535 GGATCACCAATCTGGCAGACTT 60.357 50.000 21.37 12.35 42.67 3.01
1285 1301 2.479566 TCACCAATCTGGCAGACTTC 57.520 50.000 21.37 0.00 42.67 3.01
1286 1302 1.980765 TCACCAATCTGGCAGACTTCT 59.019 47.619 21.37 0.00 42.67 2.85
1287 1303 2.082231 CACCAATCTGGCAGACTTCTG 58.918 52.381 21.37 14.07 42.67 3.02
1288 1304 1.004044 ACCAATCTGGCAGACTTCTGG 59.996 52.381 21.37 23.31 42.67 3.86
1289 1305 1.004044 CCAATCTGGCAGACTTCTGGT 59.996 52.381 21.37 0.00 43.94 4.00
1298 1314 2.739379 GCAGACTTCTGGTTGTTCTAGC 59.261 50.000 8.32 0.00 43.94 3.42
1299 1315 3.803715 GCAGACTTCTGGTTGTTCTAGCA 60.804 47.826 8.32 0.00 43.94 3.49
1302 1318 4.816925 AGACTTCTGGTTGTTCTAGCAAAC 59.183 41.667 0.00 0.00 36.65 2.93
1308 1324 4.020543 TGGTTGTTCTAGCAAACAAGGTT 58.979 39.130 9.38 0.00 46.66 3.50
1319 1335 3.814268 CAAGGTTGGATGCGCCGG 61.814 66.667 4.18 0.00 40.66 6.13
1333 1349 0.882042 CGCCGGGAAGATCATCTTGG 60.882 60.000 4.06 0.95 36.73 3.61
1344 1360 1.453379 CATCTTGGAGCAGCCCCAG 60.453 63.158 0.00 0.00 34.77 4.45
1362 1378 1.272490 CAGTAACTCTTGCAGGGACGA 59.728 52.381 0.00 0.00 0.00 4.20
1366 1382 2.989253 TCTTGCAGGGACGAGCGA 60.989 61.111 0.00 0.00 37.07 4.93
1408 1424 1.829222 GGACGTACCTTGATTCTGGGA 59.171 52.381 0.00 0.00 35.41 4.37
1411 1427 4.514401 GACGTACCTTGATTCTGGGAAAT 58.486 43.478 0.00 0.00 0.00 2.17
1412 1428 4.918588 ACGTACCTTGATTCTGGGAAATT 58.081 39.130 0.00 0.00 0.00 1.82
1504 1520 2.783379 ATGAGTCTGCCATCCTCCTA 57.217 50.000 0.00 0.00 0.00 2.94
1514 1530 1.228306 ATCCTCCTACGCCTCCTCG 60.228 63.158 0.00 0.00 0.00 4.63
1526 1542 1.186200 CCTCCTCGAGATGGACAACA 58.814 55.000 15.71 0.00 0.00 3.33
1567 1595 9.846248 GTTCACATTTGTAGCTTGATTTCTAAT 57.154 29.630 0.00 0.00 0.00 1.73
1633 1663 5.103982 ACATGGACCACATCTATCCAAATCA 60.104 40.000 0.00 0.00 45.47 2.57
1754 1825 3.273434 TCAACCTGCTACATGCTGATTC 58.727 45.455 0.00 0.00 42.27 2.52
1800 1871 4.665212 TCGCGAGTTATAGTTGATTCGTT 58.335 39.130 3.71 0.00 0.00 3.85
1820 1891 4.616835 CGTTAGTTAAACCAGCTAGACGGT 60.617 45.833 0.00 0.00 36.98 4.83
1822 1893 2.895404 AGTTAAACCAGCTAGACGGTGA 59.105 45.455 4.41 0.00 43.75 4.02
1893 1978 0.678395 TGCATGTTCCGTGGCAAATT 59.322 45.000 0.00 0.00 32.54 1.82
1898 1983 3.019933 TGTTCCGTGGCAAATTTTAGC 57.980 42.857 0.00 0.00 0.00 3.09
1927 2012 7.119846 GCTAGGAAACTACTTATGCCAATATGG 59.880 40.741 0.00 0.00 43.67 2.74
2013 2098 0.615850 GGAAGGAAGTCTGGTCCCAG 59.384 60.000 7.02 7.02 44.86 4.45
2094 2179 4.159557 AGCCATAAATCCACCAACAAGTT 58.840 39.130 0.00 0.00 0.00 2.66
2147 2232 0.392998 ACTGTGCGGCCTAATCCAAG 60.393 55.000 0.00 0.00 0.00 3.61
2195 2280 6.644347 ACGATCCTGTCAGAGTGATATTTTT 58.356 36.000 0.00 0.00 0.00 1.94
2201 2286 9.739276 TCCTGTCAGAGTGATATTTTTATTTGT 57.261 29.630 0.00 0.00 0.00 2.83
2242 2328 6.610830 AGAAAATGGGAAAAGGAAGTGTAGA 58.389 36.000 0.00 0.00 0.00 2.59
2363 2450 9.325248 TCATATGATGGTGTCCATAAGAATCTA 57.675 33.333 0.00 0.00 45.26 1.98
2437 2524 6.499000 TGACAATTAATATGGATCGGAGGGTA 59.501 38.462 0.00 0.00 0.00 3.69
2438 2525 7.182026 TGACAATTAATATGGATCGGAGGGTAT 59.818 37.037 0.00 0.00 0.00 2.73
2441 2528 9.899661 CAATTAATATGGATCGGAGGGTATAAA 57.100 33.333 0.00 0.00 0.00 1.40
2449 2536 8.857694 TGGATCGGAGGGTATAAATTAATTTC 57.142 34.615 16.56 3.40 0.00 2.17
2474 2561 9.162764 TCTGTAAGTCTTTGCTAATGTAAATCC 57.837 33.333 0.00 0.00 33.76 3.01
2497 2584 1.672881 GCTGGATTCTTGACATTCCCG 59.327 52.381 0.00 0.00 0.00 5.14
2501 2588 2.683362 GGATTCTTGACATTCCCGGAAC 59.317 50.000 0.73 0.00 0.00 3.62
2519 2606 4.757149 CGGAACTTCCTCATCACTTTTCTT 59.243 41.667 6.25 0.00 33.30 2.52
2524 2611 7.269477 ACTTCCTCATCACTTTTCTTTTGAG 57.731 36.000 0.00 0.00 0.00 3.02
2528 2615 5.536161 CCTCATCACTTTTCTTTTGAGGGAA 59.464 40.000 8.56 0.00 44.15 3.97
2531 2618 7.661040 TCATCACTTTTCTTTTGAGGGAATTC 58.339 34.615 0.00 0.00 0.00 2.17
2578 2665 8.630054 AAACACTGTATATTTTGTTGCTCCTA 57.370 30.769 0.00 0.00 32.54 2.94
2586 2673 2.276732 TTGTTGCTCCTAGCTTGCTT 57.723 45.000 0.00 0.00 42.97 3.91
2587 2674 2.276732 TGTTGCTCCTAGCTTGCTTT 57.723 45.000 0.00 0.00 42.97 3.51
2595 2682 4.697514 CTCCTAGCTTGCTTTGCATACTA 58.302 43.478 0.00 0.00 38.76 1.82
2596 2683 4.697514 TCCTAGCTTGCTTTGCATACTAG 58.302 43.478 16.04 16.04 40.72 2.57
2606 2693 1.578897 TGCATACTAGGTTCCTGGCA 58.421 50.000 1.12 0.00 0.00 4.92
2607 2694 2.126882 TGCATACTAGGTTCCTGGCAT 58.873 47.619 1.12 0.00 0.00 4.40
2611 2698 1.207791 ACTAGGTTCCTGGCATGGAG 58.792 55.000 1.12 0.00 37.43 3.86
2623 2710 4.521146 CTGGCATGGAGTAGTTTCTGAAT 58.479 43.478 0.00 0.00 0.00 2.57
2789 2897 9.230122 TCTTTCATATTCATGCAAACACTTCTA 57.770 29.630 0.00 0.00 31.73 2.10
2857 2965 5.302823 GCTATTGAAATATCCCCTTGCACTT 59.697 40.000 0.00 0.00 0.00 3.16
2921 3030 7.133133 ACTTCTTGTTCTTGACTTTACCCTA 57.867 36.000 0.00 0.00 0.00 3.53
2981 3110 8.528643 GTTGGCTATGTTCCTTTAAAATAGGTT 58.471 33.333 6.16 0.00 34.29 3.50
3071 3201 0.324275 ATTACCCCCTTGCAACGCAT 60.324 50.000 0.00 0.00 38.76 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 42 3.320673 ACTGAAGTCGATCAAACCCTC 57.679 47.619 0.00 0.00 0.00 4.30
40 43 4.322801 CCTTACTGAAGTCGATCAAACCCT 60.323 45.833 0.00 0.00 0.00 4.34
108 112 1.816074 TTGCTGCTAACTTAACCCGG 58.184 50.000 0.00 0.00 0.00 5.73
115 119 2.027192 TCGATCCCTTTGCTGCTAACTT 60.027 45.455 0.00 0.00 0.00 2.66
144 148 2.419297 GCCTGCTGCTACATACTGAAGT 60.419 50.000 0.00 0.00 36.87 3.01
234 239 3.305964 CGTGTTTCTCTCGTACACACAT 58.694 45.455 10.02 0.00 41.64 3.21
237 242 1.065851 TGCGTGTTTCTCTCGTACACA 59.934 47.619 0.00 0.00 41.64 3.72
348 361 2.852714 TTCTTTGGGCCATCCATGAT 57.147 45.000 7.26 0.00 46.52 2.45
424 437 6.931840 GGGCTCCTACTTCTATGACAAAATAG 59.068 42.308 0.00 0.00 0.00 1.73
521 534 6.631971 ATGAAATTTTGGCCAAACGAAAAT 57.368 29.167 30.43 17.68 45.31 1.82
555 569 4.036971 CCAACTCGGACATTAGGAGTAGAG 59.963 50.000 0.00 0.00 39.97 2.43
556 570 3.952323 CCAACTCGGACATTAGGAGTAGA 59.048 47.826 0.00 0.00 39.97 2.59
557 571 3.700038 ACCAACTCGGACATTAGGAGTAG 59.300 47.826 0.00 0.00 39.97 2.57
558 572 3.446161 CACCAACTCGGACATTAGGAGTA 59.554 47.826 0.00 0.00 39.97 2.59
559 573 2.233922 CACCAACTCGGACATTAGGAGT 59.766 50.000 0.00 0.00 42.52 3.85
560 574 2.496070 TCACCAACTCGGACATTAGGAG 59.504 50.000 0.00 0.00 38.63 3.69
561 575 2.531771 TCACCAACTCGGACATTAGGA 58.468 47.619 0.00 0.00 38.63 2.94
562 576 3.328382 TTCACCAACTCGGACATTAGG 57.672 47.619 0.00 0.00 38.63 2.69
563 577 4.508124 GCTATTCACCAACTCGGACATTAG 59.492 45.833 0.00 0.00 38.63 1.73
564 578 4.439057 GCTATTCACCAACTCGGACATTA 58.561 43.478 0.00 0.00 38.63 1.90
565 579 3.270877 GCTATTCACCAACTCGGACATT 58.729 45.455 0.00 0.00 38.63 2.71
566 580 2.420129 GGCTATTCACCAACTCGGACAT 60.420 50.000 0.00 0.00 38.63 3.06
567 581 1.066430 GGCTATTCACCAACTCGGACA 60.066 52.381 0.00 0.00 38.63 4.02
568 582 1.207329 AGGCTATTCACCAACTCGGAC 59.793 52.381 0.00 0.00 38.63 4.79
569 583 1.480954 GAGGCTATTCACCAACTCGGA 59.519 52.381 0.00 0.00 38.63 4.55
570 584 1.473434 GGAGGCTATTCACCAACTCGG 60.473 57.143 0.00 0.00 42.50 4.63
571 585 1.207089 TGGAGGCTATTCACCAACTCG 59.793 52.381 0.00 0.00 0.00 4.18
572 586 3.209410 CATGGAGGCTATTCACCAACTC 58.791 50.000 0.00 0.00 36.00 3.01
573 587 2.092212 CCATGGAGGCTATTCACCAACT 60.092 50.000 5.56 0.00 36.00 3.16
574 588 2.301346 CCATGGAGGCTATTCACCAAC 58.699 52.381 5.56 0.00 36.00 3.77
575 589 1.922447 ACCATGGAGGCTATTCACCAA 59.078 47.619 21.47 0.00 43.14 3.67
576 590 1.595311 ACCATGGAGGCTATTCACCA 58.405 50.000 21.47 0.00 43.14 4.17
577 591 2.736670 AACCATGGAGGCTATTCACC 57.263 50.000 21.47 0.00 43.14 4.02
578 592 6.715347 AAATAAACCATGGAGGCTATTCAC 57.285 37.500 21.47 0.00 43.14 3.18
579 593 7.180051 ACAAAAATAAACCATGGAGGCTATTCA 59.820 33.333 21.47 0.00 43.14 2.57
580 594 7.555965 ACAAAAATAAACCATGGAGGCTATTC 58.444 34.615 21.47 0.00 43.14 1.75
581 595 7.364673 GGACAAAAATAAACCATGGAGGCTATT 60.365 37.037 21.47 11.82 43.14 1.73
582 596 6.098266 GGACAAAAATAAACCATGGAGGCTAT 59.902 38.462 21.47 6.31 43.14 2.97
583 597 5.420739 GGACAAAAATAAACCATGGAGGCTA 59.579 40.000 21.47 4.05 43.14 3.93
584 598 4.222810 GGACAAAAATAAACCATGGAGGCT 59.777 41.667 21.47 1.64 43.14 4.58
585 599 4.020662 TGGACAAAAATAAACCATGGAGGC 60.021 41.667 21.47 0.00 43.14 4.70
586 600 5.478407 GTGGACAAAAATAAACCATGGAGG 58.522 41.667 21.47 0.00 45.67 4.30
587 601 5.011533 TGGTGGACAAAAATAAACCATGGAG 59.988 40.000 21.47 0.00 32.88 3.86
588 602 4.901849 TGGTGGACAAAAATAAACCATGGA 59.098 37.500 21.47 0.00 32.88 3.41
589 603 4.994217 GTGGTGGACAAAAATAAACCATGG 59.006 41.667 11.19 11.19 39.70 3.66
590 604 5.852827 AGTGGTGGACAAAAATAAACCATG 58.147 37.500 0.00 0.00 39.70 3.66
591 605 6.493189 AAGTGGTGGACAAAAATAAACCAT 57.507 33.333 0.00 0.00 39.70 3.55
592 606 5.941555 AAGTGGTGGACAAAAATAAACCA 57.058 34.783 0.00 0.00 35.39 3.67
593 607 6.457663 GCAAAAGTGGTGGACAAAAATAAACC 60.458 38.462 0.00 0.00 0.00 3.27
594 608 6.315144 AGCAAAAGTGGTGGACAAAAATAAAC 59.685 34.615 0.00 0.00 33.11 2.01
595 609 6.410540 AGCAAAAGTGGTGGACAAAAATAAA 58.589 32.000 0.00 0.00 33.11 1.40
596 610 5.983540 AGCAAAAGTGGTGGACAAAAATAA 58.016 33.333 0.00 0.00 33.11 1.40
597 611 5.606348 AGCAAAAGTGGTGGACAAAAATA 57.394 34.783 0.00 0.00 33.11 1.40
598 612 4.486125 AGCAAAAGTGGTGGACAAAAAT 57.514 36.364 0.00 0.00 33.11 1.82
599 613 3.971245 AGCAAAAGTGGTGGACAAAAA 57.029 38.095 0.00 0.00 33.11 1.94
624 638 0.637195 TGTTGGGAGGGGGACAAAAA 59.363 50.000 0.00 0.00 0.00 1.94
625 639 0.105913 GTGTTGGGAGGGGGACAAAA 60.106 55.000 0.00 0.00 0.00 2.44
626 640 1.539665 GTGTTGGGAGGGGGACAAA 59.460 57.895 0.00 0.00 0.00 2.83
627 641 2.466186 GGTGTTGGGAGGGGGACAA 61.466 63.158 0.00 0.00 0.00 3.18
628 642 2.856988 GGTGTTGGGAGGGGGACA 60.857 66.667 0.00 0.00 0.00 4.02
629 643 3.658422 GGGTGTTGGGAGGGGGAC 61.658 72.222 0.00 0.00 0.00 4.46
632 646 3.339093 GAGGGGTGTTGGGAGGGG 61.339 72.222 0.00 0.00 0.00 4.79
633 647 3.339093 GGAGGGGTGTTGGGAGGG 61.339 72.222 0.00 0.00 0.00 4.30
634 648 3.339093 GGGAGGGGTGTTGGGAGG 61.339 72.222 0.00 0.00 0.00 4.30
635 649 2.531685 TGGGAGGGGTGTTGGGAG 60.532 66.667 0.00 0.00 0.00 4.30
636 650 2.856988 GTGGGAGGGGTGTTGGGA 60.857 66.667 0.00 0.00 0.00 4.37
637 651 2.858974 AGTGGGAGGGGTGTTGGG 60.859 66.667 0.00 0.00 0.00 4.12
638 652 2.436109 CAGTGGGAGGGGTGTTGG 59.564 66.667 0.00 0.00 0.00 3.77
639 653 2.006805 AACCAGTGGGAGGGGTGTTG 62.007 60.000 15.21 0.00 38.05 3.33
640 654 1.293683 AAACCAGTGGGAGGGGTGTT 61.294 55.000 15.21 0.00 38.05 3.32
641 655 0.402272 TAAACCAGTGGGAGGGGTGT 60.402 55.000 15.21 0.00 38.05 4.16
642 656 0.999712 ATAAACCAGTGGGAGGGGTG 59.000 55.000 15.21 0.00 38.05 4.61
643 657 1.768265 AATAAACCAGTGGGAGGGGT 58.232 50.000 15.21 0.00 38.05 4.95
644 658 2.919772 AAATAAACCAGTGGGAGGGG 57.080 50.000 15.21 0.00 38.05 4.79
645 659 3.509967 GTGAAAATAAACCAGTGGGAGGG 59.490 47.826 15.21 0.00 38.05 4.30
646 660 4.148838 TGTGAAAATAAACCAGTGGGAGG 58.851 43.478 15.21 0.00 38.05 4.30
647 661 5.476599 TGATGTGAAAATAAACCAGTGGGAG 59.523 40.000 15.21 0.00 38.05 4.30
648 662 5.242838 GTGATGTGAAAATAAACCAGTGGGA 59.757 40.000 15.21 0.00 38.05 4.37
649 663 5.469479 GTGATGTGAAAATAAACCAGTGGG 58.531 41.667 15.21 0.00 41.29 4.61
650 664 5.243730 AGGTGATGTGAAAATAAACCAGTGG 59.756 40.000 7.91 7.91 0.00 4.00
651 665 6.207417 AGAGGTGATGTGAAAATAAACCAGTG 59.793 38.462 0.00 0.00 0.00 3.66
652 666 6.306987 AGAGGTGATGTGAAAATAAACCAGT 58.693 36.000 0.00 0.00 0.00 4.00
653 667 6.430925 TGAGAGGTGATGTGAAAATAAACCAG 59.569 38.462 0.00 0.00 0.00 4.00
654 668 6.206634 GTGAGAGGTGATGTGAAAATAAACCA 59.793 38.462 0.00 0.00 0.00 3.67
655 669 6.206634 TGTGAGAGGTGATGTGAAAATAAACC 59.793 38.462 0.00 0.00 0.00 3.27
656 670 7.078228 GTGTGAGAGGTGATGTGAAAATAAAC 58.922 38.462 0.00 0.00 0.00 2.01
657 671 6.770303 TGTGTGAGAGGTGATGTGAAAATAAA 59.230 34.615 0.00 0.00 0.00 1.40
658 672 6.295249 TGTGTGAGAGGTGATGTGAAAATAA 58.705 36.000 0.00 0.00 0.00 1.40
659 673 5.863965 TGTGTGAGAGGTGATGTGAAAATA 58.136 37.500 0.00 0.00 0.00 1.40
660 674 4.717877 TGTGTGAGAGGTGATGTGAAAAT 58.282 39.130 0.00 0.00 0.00 1.82
661 675 4.149511 TGTGTGAGAGGTGATGTGAAAA 57.850 40.909 0.00 0.00 0.00 2.29
662 676 3.836365 TGTGTGAGAGGTGATGTGAAA 57.164 42.857 0.00 0.00 0.00 2.69
663 677 3.836365 TTGTGTGAGAGGTGATGTGAA 57.164 42.857 0.00 0.00 0.00 3.18
664 678 3.614870 CGATTGTGTGAGAGGTGATGTGA 60.615 47.826 0.00 0.00 0.00 3.58
665 679 2.669924 CGATTGTGTGAGAGGTGATGTG 59.330 50.000 0.00 0.00 0.00 3.21
666 680 2.354103 CCGATTGTGTGAGAGGTGATGT 60.354 50.000 0.00 0.00 0.00 3.06
667 681 2.094026 TCCGATTGTGTGAGAGGTGATG 60.094 50.000 0.00 0.00 0.00 3.07
668 682 2.179427 TCCGATTGTGTGAGAGGTGAT 58.821 47.619 0.00 0.00 0.00 3.06
669 683 1.627864 TCCGATTGTGTGAGAGGTGA 58.372 50.000 0.00 0.00 0.00 4.02
670 684 2.455674 TTCCGATTGTGTGAGAGGTG 57.544 50.000 0.00 0.00 0.00 4.00
671 685 3.485463 TTTTCCGATTGTGTGAGAGGT 57.515 42.857 0.00 0.00 0.00 3.85
672 686 6.683974 ATATTTTTCCGATTGTGTGAGAGG 57.316 37.500 0.00 0.00 0.00 3.69
673 687 9.490663 GTTTATATTTTTCCGATTGTGTGAGAG 57.509 33.333 0.00 0.00 0.00 3.20
674 688 9.004717 TGTTTATATTTTTCCGATTGTGTGAGA 57.995 29.630 0.00 0.00 0.00 3.27
675 689 9.277565 CTGTTTATATTTTTCCGATTGTGTGAG 57.722 33.333 0.00 0.00 0.00 3.51
676 690 9.004717 TCTGTTTATATTTTTCCGATTGTGTGA 57.995 29.630 0.00 0.00 0.00 3.58
677 691 9.787532 ATCTGTTTATATTTTTCCGATTGTGTG 57.212 29.630 0.00 0.00 0.00 3.82
684 698 9.667107 AGTTCTGATCTGTTTATATTTTTCCGA 57.333 29.630 0.00 0.00 0.00 4.55
694 708 9.107177 CTGCATAGAAAGTTCTGATCTGTTTAT 57.893 33.333 3.76 0.00 38.19 1.40
695 709 7.550551 CCTGCATAGAAAGTTCTGATCTGTTTA 59.449 37.037 3.76 0.00 38.19 2.01
696 710 6.373774 CCTGCATAGAAAGTTCTGATCTGTTT 59.626 38.462 3.76 0.00 38.19 2.83
697 711 5.879223 CCTGCATAGAAAGTTCTGATCTGTT 59.121 40.000 3.76 0.00 38.19 3.16
698 712 5.046014 ACCTGCATAGAAAGTTCTGATCTGT 60.046 40.000 3.76 0.00 38.19 3.41
699 713 5.293814 CACCTGCATAGAAAGTTCTGATCTG 59.706 44.000 3.76 0.00 38.19 2.90
700 714 5.426504 CACCTGCATAGAAAGTTCTGATCT 58.573 41.667 3.76 0.00 38.19 2.75
701 715 4.034975 GCACCTGCATAGAAAGTTCTGATC 59.965 45.833 3.76 0.00 41.59 2.92
702 716 3.944015 GCACCTGCATAGAAAGTTCTGAT 59.056 43.478 3.76 0.00 41.59 2.90
703 717 3.338249 GCACCTGCATAGAAAGTTCTGA 58.662 45.455 3.76 0.00 41.59 3.27
704 718 3.754188 GCACCTGCATAGAAAGTTCTG 57.246 47.619 3.76 0.00 41.59 3.02
717 731 6.852664 ACATTACTAAATAAGTTGCACCTGC 58.147 36.000 0.00 0.00 39.80 4.85
718 732 8.268850 AGACATTACTAAATAAGTTGCACCTG 57.731 34.615 0.00 0.00 39.80 4.00
719 733 8.863872 AAGACATTACTAAATAAGTTGCACCT 57.136 30.769 0.00 0.00 39.80 4.00
739 753 9.108284 TGATTGATTCTTTCGCATATAAAGACA 57.892 29.630 0.00 0.00 41.43 3.41
740 754 9.374960 GTGATTGATTCTTTCGCATATAAAGAC 57.625 33.333 0.00 0.00 41.43 3.01
741 755 9.108284 TGTGATTGATTCTTTCGCATATAAAGA 57.892 29.630 0.00 0.00 40.33 2.52
742 756 9.720667 TTGTGATTGATTCTTTCGCATATAAAG 57.279 29.630 4.33 0.00 35.66 1.85
748 762 9.241317 GATTTATTGTGATTGATTCTTTCGCAT 57.759 29.630 4.33 0.36 30.69 4.73
749 763 8.461222 AGATTTATTGTGATTGATTCTTTCGCA 58.539 29.630 0.00 0.47 0.00 5.10
750 764 8.847444 AGATTTATTGTGATTGATTCTTTCGC 57.153 30.769 0.00 0.00 0.00 4.70
759 773 9.513906 TGGTCTACAAAGATTTATTGTGATTGA 57.486 29.630 2.37 0.00 40.95 2.57
796 810 9.559958 GAGATGTGATTGAACGAATTGTTAATT 57.440 29.630 0.00 0.00 42.09 1.40
797 811 8.950210 AGAGATGTGATTGAACGAATTGTTAAT 58.050 29.630 0.00 0.00 42.09 1.40
798 812 8.322906 AGAGATGTGATTGAACGAATTGTTAA 57.677 30.769 0.00 0.00 42.09 2.01
799 813 7.905604 AGAGATGTGATTGAACGAATTGTTA 57.094 32.000 0.00 0.00 42.09 2.41
800 814 6.808008 AGAGATGTGATTGAACGAATTGTT 57.192 33.333 0.00 0.00 45.61 2.83
801 815 7.099764 AGTAGAGATGTGATTGAACGAATTGT 58.900 34.615 0.00 0.00 0.00 2.71
802 816 7.531280 AGTAGAGATGTGATTGAACGAATTG 57.469 36.000 0.00 0.00 0.00 2.32
803 817 7.707035 GGTAGTAGAGATGTGATTGAACGAATT 59.293 37.037 0.00 0.00 0.00 2.17
804 818 7.068839 AGGTAGTAGAGATGTGATTGAACGAAT 59.931 37.037 0.00 0.00 0.00 3.34
805 819 6.377429 AGGTAGTAGAGATGTGATTGAACGAA 59.623 38.462 0.00 0.00 0.00 3.85
806 820 5.886474 AGGTAGTAGAGATGTGATTGAACGA 59.114 40.000 0.00 0.00 0.00 3.85
807 821 6.137794 AGGTAGTAGAGATGTGATTGAACG 57.862 41.667 0.00 0.00 0.00 3.95
808 822 9.871238 TTTTAGGTAGTAGAGATGTGATTGAAC 57.129 33.333 0.00 0.00 0.00 3.18
810 824 9.871238 GTTTTTAGGTAGTAGAGATGTGATTGA 57.129 33.333 0.00 0.00 0.00 2.57
811 825 9.653287 TGTTTTTAGGTAGTAGAGATGTGATTG 57.347 33.333 0.00 0.00 0.00 2.67
812 826 9.654663 GTGTTTTTAGGTAGTAGAGATGTGATT 57.345 33.333 0.00 0.00 0.00 2.57
813 827 7.974501 CGTGTTTTTAGGTAGTAGAGATGTGAT 59.025 37.037 0.00 0.00 0.00 3.06
814 828 7.040201 ACGTGTTTTTAGGTAGTAGAGATGTGA 60.040 37.037 0.00 0.00 0.00 3.58
815 829 7.088905 ACGTGTTTTTAGGTAGTAGAGATGTG 58.911 38.462 0.00 0.00 0.00 3.21
816 830 7.224522 ACGTGTTTTTAGGTAGTAGAGATGT 57.775 36.000 0.00 0.00 0.00 3.06
817 831 7.431668 GCTACGTGTTTTTAGGTAGTAGAGATG 59.568 40.741 0.00 0.00 39.79 2.90
818 832 7.121759 TGCTACGTGTTTTTAGGTAGTAGAGAT 59.878 37.037 0.00 0.00 39.79 2.75
819 833 6.430925 TGCTACGTGTTTTTAGGTAGTAGAGA 59.569 38.462 0.00 0.00 39.79 3.10
820 834 6.615088 TGCTACGTGTTTTTAGGTAGTAGAG 58.385 40.000 0.00 0.00 39.79 2.43
821 835 6.573664 TGCTACGTGTTTTTAGGTAGTAGA 57.426 37.500 0.00 0.00 39.79 2.59
822 836 7.009907 GGAATGCTACGTGTTTTTAGGTAGTAG 59.990 40.741 0.00 0.00 39.79 2.57
823 837 6.813152 GGAATGCTACGTGTTTTTAGGTAGTA 59.187 38.462 0.00 0.00 39.79 1.82
824 838 5.640783 GGAATGCTACGTGTTTTTAGGTAGT 59.359 40.000 0.00 0.00 39.79 2.73
825 839 5.873164 AGGAATGCTACGTGTTTTTAGGTAG 59.127 40.000 0.00 0.00 40.30 3.18
826 840 5.797051 AGGAATGCTACGTGTTTTTAGGTA 58.203 37.500 0.00 0.00 0.00 3.08
827 841 4.648651 AGGAATGCTACGTGTTTTTAGGT 58.351 39.130 0.00 0.00 0.00 3.08
828 842 5.622770 AAGGAATGCTACGTGTTTTTAGG 57.377 39.130 0.00 0.00 0.00 2.69
829 843 6.581166 GGAAAAGGAATGCTACGTGTTTTTAG 59.419 38.462 0.00 0.00 0.00 1.85
830 844 6.263617 AGGAAAAGGAATGCTACGTGTTTTTA 59.736 34.615 0.00 0.00 0.00 1.52
837 851 2.304761 TCCAGGAAAAGGAATGCTACGT 59.695 45.455 0.00 0.00 30.71 3.57
874 888 2.061182 GAGGGGGACGATCGACGAAG 62.061 65.000 24.34 1.50 45.77 3.79
878 892 3.225061 GGGAGGGGGACGATCGAC 61.225 72.222 24.34 16.38 0.00 4.20
895 909 4.496898 GCACTTTTCTCGTGTGCG 57.503 55.556 0.00 0.00 45.62 5.34
915 929 2.836360 GTATGGGAGGGCGGACGA 60.836 66.667 0.00 0.00 0.00 4.20
967 981 2.546795 CGGGATCTGATCTGGTGTAAGC 60.547 54.545 16.61 0.00 0.00 3.09
968 982 2.546795 GCGGGATCTGATCTGGTGTAAG 60.547 54.545 16.61 2.43 0.00 2.34
1005 1019 2.285024 GGGGCTTTGCTTGGATGCA 61.285 57.895 0.00 0.00 41.65 3.96
1050 1066 2.001812 GCATGAGCGAGAGAGAACAA 57.998 50.000 0.00 0.00 0.00 2.83
1116 1132 0.166161 GAAAGAAAGGCTTCGACGGC 59.834 55.000 7.44 7.44 35.24 5.68
1117 1133 0.796927 GGAAAGAAAGGCTTCGACGG 59.203 55.000 0.00 0.00 35.24 4.79
1165 1181 1.886542 CCAGTTTAACAGGTTGGCTCC 59.113 52.381 0.00 0.00 0.00 4.70
1173 1189 4.714308 AGAGATCTCCTCCAGTTTAACAGG 59.286 45.833 19.30 0.00 42.97 4.00
1174 1190 5.930837 AGAGATCTCCTCCAGTTTAACAG 57.069 43.478 19.30 0.00 42.97 3.16
1177 1193 5.241949 GCGATAGAGATCTCCTCCAGTTTAA 59.758 44.000 19.30 0.00 42.97 1.52
1180 1196 3.153919 GCGATAGAGATCTCCTCCAGTT 58.846 50.000 19.30 1.32 42.97 3.16
1182 1198 1.737236 CGCGATAGAGATCTCCTCCAG 59.263 57.143 19.30 8.52 42.97 3.86
1183 1199 1.348036 TCGCGATAGAGATCTCCTCCA 59.652 52.381 19.30 2.88 42.97 3.86
1208 1224 0.737715 GATGTCTGACTGGGTCGCAC 60.738 60.000 9.51 0.00 34.95 5.34
1216 1232 0.179127 ATCGTGGCGATGTCTGACTG 60.179 55.000 9.51 0.46 45.24 3.51
1222 1238 1.211818 GAGCTGATCGTGGCGATGTC 61.212 60.000 8.82 0.00 47.00 3.06
1227 1243 1.067084 ATGAGAGCTGATCGTGGCG 59.933 57.895 0.00 0.00 0.00 5.69
1234 1250 1.137697 TGATGCCCATGAGAGCTGAT 58.862 50.000 0.00 0.00 0.00 2.90
1244 1260 2.520020 CCCGTGCATGATGCCCAT 60.520 61.111 15.70 0.00 44.23 4.00
1253 1269 1.561769 TTGGTGATCCTCCCGTGCAT 61.562 55.000 0.00 0.00 34.23 3.96
1255 1271 0.815615 GATTGGTGATCCTCCCGTGC 60.816 60.000 0.00 0.00 34.23 5.34
1256 1272 0.833287 AGATTGGTGATCCTCCCGTG 59.167 55.000 0.00 0.00 35.21 4.94
1257 1273 0.833287 CAGATTGGTGATCCTCCCGT 59.167 55.000 0.00 0.00 35.21 5.28
1258 1274 0.107456 CCAGATTGGTGATCCTCCCG 59.893 60.000 0.00 0.00 35.21 5.14
1259 1275 0.179006 GCCAGATTGGTGATCCTCCC 60.179 60.000 0.00 0.00 40.46 4.30
1260 1276 0.548031 TGCCAGATTGGTGATCCTCC 59.452 55.000 0.00 0.00 40.46 4.30
1261 1277 1.487976 TCTGCCAGATTGGTGATCCTC 59.512 52.381 0.00 0.00 40.46 3.71
1262 1278 1.211457 GTCTGCCAGATTGGTGATCCT 59.789 52.381 0.00 0.00 40.46 3.24
1263 1279 1.211457 AGTCTGCCAGATTGGTGATCC 59.789 52.381 0.00 0.00 40.46 3.36
1264 1280 2.706339 AGTCTGCCAGATTGGTGATC 57.294 50.000 0.00 0.00 40.46 2.92
1265 1281 2.575279 AGAAGTCTGCCAGATTGGTGAT 59.425 45.455 0.00 0.00 40.46 3.06
1266 1282 1.980765 AGAAGTCTGCCAGATTGGTGA 59.019 47.619 0.00 0.00 40.46 4.02
1267 1283 2.082231 CAGAAGTCTGCCAGATTGGTG 58.918 52.381 0.00 0.00 40.46 4.17
1268 1284 1.004044 CCAGAAGTCTGCCAGATTGGT 59.996 52.381 0.00 0.00 42.47 3.67
1269 1285 1.004044 ACCAGAAGTCTGCCAGATTGG 59.996 52.381 0.00 6.81 42.47 3.16
1270 1286 2.486472 ACCAGAAGTCTGCCAGATTG 57.514 50.000 0.00 0.00 42.47 2.67
1271 1287 2.107204 ACAACCAGAAGTCTGCCAGATT 59.893 45.455 0.00 0.00 42.47 2.40
1272 1288 1.701847 ACAACCAGAAGTCTGCCAGAT 59.298 47.619 0.00 0.00 42.47 2.90
1273 1289 1.131638 ACAACCAGAAGTCTGCCAGA 58.868 50.000 2.59 0.00 42.47 3.86
1274 1290 1.876156 GAACAACCAGAAGTCTGCCAG 59.124 52.381 2.59 0.00 42.47 4.85
1275 1291 1.490490 AGAACAACCAGAAGTCTGCCA 59.510 47.619 2.59 0.00 42.47 4.92
1276 1292 2.262423 AGAACAACCAGAAGTCTGCC 57.738 50.000 2.59 0.00 42.47 4.85
1277 1293 2.739379 GCTAGAACAACCAGAAGTCTGC 59.261 50.000 2.59 0.00 42.47 4.26
1278 1294 3.995199 TGCTAGAACAACCAGAAGTCTG 58.005 45.455 1.05 1.05 43.40 3.51
1279 1295 4.689612 TTGCTAGAACAACCAGAAGTCT 57.310 40.909 0.00 0.00 0.00 3.24
1280 1296 4.574828 TGTTTGCTAGAACAACCAGAAGTC 59.425 41.667 0.00 0.00 36.64 3.01
1281 1297 4.523083 TGTTTGCTAGAACAACCAGAAGT 58.477 39.130 0.00 0.00 36.64 3.01
1282 1298 5.499139 TTGTTTGCTAGAACAACCAGAAG 57.501 39.130 5.81 0.00 42.73 2.85
1283 1299 4.338118 CCTTGTTTGCTAGAACAACCAGAA 59.662 41.667 5.81 0.00 42.73 3.02
1284 1300 3.882888 CCTTGTTTGCTAGAACAACCAGA 59.117 43.478 5.81 0.00 42.73 3.86
1285 1301 3.632145 ACCTTGTTTGCTAGAACAACCAG 59.368 43.478 5.81 1.10 42.73 4.00
1286 1302 3.626930 ACCTTGTTTGCTAGAACAACCA 58.373 40.909 5.81 0.00 42.73 3.67
1287 1303 4.359706 CAACCTTGTTTGCTAGAACAACC 58.640 43.478 5.81 0.00 42.73 3.77
1288 1304 4.097286 TCCAACCTTGTTTGCTAGAACAAC 59.903 41.667 5.81 0.17 42.73 3.32
1289 1305 4.274147 TCCAACCTTGTTTGCTAGAACAA 58.726 39.130 8.86 8.86 44.69 2.83
1298 1314 0.667184 GGCGCATCCAACCTTGTTTG 60.667 55.000 10.83 0.00 34.01 2.93
1299 1315 1.665442 GGCGCATCCAACCTTGTTT 59.335 52.632 10.83 0.00 34.01 2.83
1302 1318 3.814268 CCGGCGCATCCAACCTTG 61.814 66.667 10.83 0.00 34.01 3.61
1308 1324 3.460672 GATCTTCCCGGCGCATCCA 62.461 63.158 10.83 0.00 34.01 3.41
1319 1335 2.220313 GCTGCTCCAAGATGATCTTCC 58.780 52.381 4.39 0.00 33.78 3.46
1333 1349 0.615850 AAGAGTTACTGGGGCTGCTC 59.384 55.000 0.00 0.00 0.00 4.26
1344 1360 1.997669 CTCGTCCCTGCAAGAGTTAC 58.002 55.000 0.00 0.00 34.07 2.50
1362 1378 1.445095 CCATAGGCAGAGCTTCGCT 59.555 57.895 8.07 0.00 43.88 4.93
1378 1394 2.345991 GTACGTCCTGCCTTGCCA 59.654 61.111 0.00 0.00 0.00 4.92
1379 1395 2.436115 GGTACGTCCTGCCTTGCC 60.436 66.667 0.00 0.00 0.00 4.52
1412 1428 4.874966 CAGCCTGTCCATTTTCAACAAAAA 59.125 37.500 0.00 0.00 40.98 1.94
1504 1520 2.122167 GTCCATCTCGAGGAGGCGT 61.122 63.158 13.56 0.00 35.42 5.68
1514 1530 1.535462 CCAAACCGTGTTGTCCATCTC 59.465 52.381 0.00 0.00 0.00 2.75
1526 1542 2.820787 TGTGAACTGAAAACCAAACCGT 59.179 40.909 0.00 0.00 0.00 4.83
1593 1623 3.640498 TCCATGTGGACAATTTTGCAGAA 59.360 39.130 0.00 0.00 39.78 3.02
1633 1663 8.985315 AACACAAGTACCATAATCATCATCAT 57.015 30.769 0.00 0.00 0.00 2.45
1674 1705 6.314917 AGTGGAAATACTCCCAAATCTTGTT 58.685 36.000 0.00 0.00 44.69 2.83
1696 1727 2.163509 ACAGCAGACTCGTCATGTAGT 58.836 47.619 0.00 0.00 0.00 2.73
1705 1776 3.248363 TCATCAAACAAACAGCAGACTCG 59.752 43.478 0.00 0.00 0.00 4.18
1800 1871 4.081406 TCACCGTCTAGCTGGTTTAACTA 58.919 43.478 0.00 0.00 35.96 2.24
1822 1893 9.807649 GTCAAGTGGCAGATTGATTTAATTAAT 57.192 29.630 15.72 0.00 37.72 1.40
1844 1915 2.353704 CGCTGAACCATAGACAGGTCAA 60.354 50.000 1.84 0.00 38.76 3.18
1893 1978 8.142551 GCATAAGTAGTTTCCTAGCTAGCTAAA 58.857 37.037 24.20 15.39 0.00 1.85
1898 1983 6.406692 TGGCATAAGTAGTTTCCTAGCTAG 57.593 41.667 14.20 14.20 0.00 3.42
1927 2012 7.064728 TGCAAGTACCAAATAAAACAAACAACC 59.935 33.333 0.00 0.00 0.00 3.77
2013 2098 1.901591 CATCTGTCCATATGTGCCCC 58.098 55.000 1.24 0.00 0.00 5.80
2147 2232 3.498927 TGCTACTGTACGGCTTACTTC 57.501 47.619 0.23 0.00 0.00 3.01
2195 2280 8.596271 TCTTCAATTACACGAGACAACAAATA 57.404 30.769 0.00 0.00 0.00 1.40
2201 2286 7.359595 CCATTTTCTTCAATTACACGAGACAA 58.640 34.615 0.00 0.00 0.00 3.18
2208 2293 8.147704 TCCTTTTCCCATTTTCTTCAATTACAC 58.852 33.333 0.00 0.00 0.00 2.90
2242 2328 3.691609 GCATAAAAAGCTCTGCCTAGTGT 59.308 43.478 0.00 0.00 0.00 3.55
2308 2395 8.003044 AGGCTTGTGATGTACTACCTTAGTATA 58.997 37.037 0.00 0.00 42.68 1.47
2313 2400 7.343574 TGAATAGGCTTGTGATGTACTACCTTA 59.656 37.037 0.00 0.00 31.79 2.69
2412 2499 5.309543 ACCCTCCGATCCATATTAATTGTCA 59.690 40.000 0.00 0.00 0.00 3.58
2449 2536 8.946085 TGGATTTACATTAGCAAAGACTTACAG 58.054 33.333 0.00 0.00 0.00 2.74
2474 2561 3.129988 GGGAATGTCAAGAATCCAGCTTG 59.870 47.826 0.00 0.00 43.09 4.01
2497 2584 6.641169 AAAGAAAAGTGATGAGGAAGTTCC 57.359 37.500 14.54 14.54 36.58 3.62
2558 2645 7.412853 CAAGCTAGGAGCAACAAAATATACAG 58.587 38.462 0.64 0.00 45.56 2.74
2569 2656 1.402062 GCAAAGCAAGCTAGGAGCAAC 60.402 52.381 0.64 0.00 45.56 4.17
2571 2658 0.250858 TGCAAAGCAAGCTAGGAGCA 60.251 50.000 0.64 0.96 37.38 4.26
2578 2665 3.356529 ACCTAGTATGCAAAGCAAGCT 57.643 42.857 0.00 0.16 43.62 3.74
2586 2673 1.912731 TGCCAGGAACCTAGTATGCAA 59.087 47.619 0.00 0.00 0.00 4.08
2587 2674 1.578897 TGCCAGGAACCTAGTATGCA 58.421 50.000 0.00 0.00 0.00 3.96
2595 2682 1.207791 CTACTCCATGCCAGGAACCT 58.792 55.000 0.00 0.00 37.20 3.50
2596 2683 0.912486 ACTACTCCATGCCAGGAACC 59.088 55.000 0.00 0.00 37.20 3.62
2940 3049 7.902087 ACATAGCCAACCTTTTTGCTAATTTA 58.098 30.769 0.00 0.00 38.93 1.40
2947 3056 3.006859 AGGAACATAGCCAACCTTTTTGC 59.993 43.478 0.00 0.00 0.00 3.68
2981 3110 3.011818 GGATCAACATGCACATCAGACA 58.988 45.455 0.00 0.00 0.00 3.41
3043 3172 6.234920 GTTGCAAGGGGGTAATAAATTTGTT 58.765 36.000 0.00 5.47 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.