>input_sequence_60647
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-----------------------------------------------------ATGACTGCATCCAAGCAAAGCCCCCTC
TCTC--ATGCACCCATCGCCCTCCCTTGTTCTCTCTCGCTCATGCGGCCGCCACCACCACCGACTCCTTCTCCCGTGATC
TCACGCTCGCCGCCGTCGAAGCCTTTCTTTCCCTCCCTCTCGCACACTCACCGGTGAGATGGAGCCAACCTGTTAAACTG
GAGGAGATCTCTATCGCGAGTCTGTGCGACCCAGTCAGACATCGCCACGATCAGCTCTCATGGGCATCATGCACGGGAGG
ATCACCAATCTGGCAGACTTCTGGTTGTTCTAGCAAACAAGGTTGGATGCGCCGGGAAGATCATCTTGGAGCAGCCCCAG
TAACTCTTGCAGGGACGAGCGAAGCTCTGCCTATGGCAAGGCAGGACGTACCTTGATTCTGGGAAATTTTTTGTTGAAAA
TGGACAGGCTGGTCGCTGGGATGGTTTGGGGTTCCACTGCTGGGCAAATAGAGTACGCGAATGAGTCTGCCATCCTCCTA
CGCCTCCTCGAGATGGACAACACGGTTTGGTTTTCAGTTCACATTTGT------------AGCTTGATTTCTAATCCATG
TGAATTTCTGTATAA--TTTTTTTCTGCAAAATTGTCCACATGGACCACATCTATCCAAATCATGATGATGATTATGGTA
CTTGTGTTTCTTGATTTTTT-TAGAACAAGATTTGGGAGTATTTCCACTACAT---------------------------
-------------GACGAGTCTGCTGTTTGTTTGATGATCAACTCAACCTGCTACATGCTGATTCTTTAGCTAAACCATA
TTATCTCATCGCGAGTTATAGTTGATTCGTTAGTTAAACCAGCTAGACGGTGATTAATTAAATCAATCTGCCACTTGACC
TGTCTATGGTTCAGCGATGGTAGATGCATG--------------TTCCGTGGCAAATTTTAGCTAGCTAGGAAACTACTT
ATGCCAATATGGGTTGTTTGTTTTATTTGGTACTTGCAGGCTGCAAACTTTGCTCTATCAAAGGAGGCAGTATTTGATGG
AAGGAAGTCTGGTCCCAGGGGCACATATGGACAGATGCATCTTGACTGCATGTCCATCAAAAACTTCACAAAGAAGAGCC
ATAAATCCACCAACAAGTTGGCCTGA------------------------------------------------------
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-------------------------------
>chr7A_1_TraesCS7A01G293700
TCCAGAGGCA--ACCCAACCGGCTAGCTACATCTCACACACGAGGGTTT-GATCGACTTCAGTAAGGAGCAATAGCGATC
AATCGGGTTCAGTTAGTAGCGAAGGAGTCGGCCGGGTTAAGTTAGCAGCAAAGGGATCGATCGATCGACTTCAGTATGTA
GCAGCAGGCAATCACTCAGGTTCAAT-AACTGAATGCCTCTCGCTCGGGTTCAGTCATAGCGACACGGCTCGCACCACAT
GTGTGTA--CGAGA--GAAACACGCAAACCACACTGCATC--GCTCGGCCT-GACC-ACCCACCGTAACCGGGAACTCCG
TGAAAATTTCCTCGCCCTCACTTCTACCACGATTTTTTATATCATGGATGGCCCAAAGAATGTCATGCAGGTGCGTCCCC
GGCCCACCTAGGATGAAAATCCCATTTTCTGTCATGCTATTTTGTCATAGAAGTAGGAGCCCACCACATCTATGATGATA
CGTGTTTTTGTCACAATTATCGTCATAGGAGTGTCATAACCATGACATAATTTATTTTCGTTT-GGCCAAAATTTCATAG
ATGTGTATCTCTACTCCTAATGTCCGAGTTGGTGAATAGCCTCCATGGTTTATTTTTGTCCACCACTTTTGCTGGGTTTT
TTGTCCCCCTCCCAACACCCCTCCCACTGGTTTATTTTCACATCACCTCTCACACAATCGGAAAAATATAAACAGATCAG
AACTTTCTATGCAGGTGCAACTTATTTAGTAATGTCTTTATATGCGAAAGAATCAATCACAATAAATCTTTGTAGACCAA
ATCAAAATTAATTAACAATTCGTTCAATCACATCTCTACTACCTAAAAACACGTAGCATTCCTTTTCCTGGACCGCGTCC
TGCCTCCCTTCGTCGATCGTCCCCCTCCCGCACACGAGAAAAGTGCTCTCGTCCGCCCTCCCATACCGTTTTCTTCCCCC
TCTCTTCGCTCTAGTTTTTTGCTTACACCAGATCAGATCCCGCCACCACCGGCATGACTGCATCCAAGCAAAGCCCCCTC
TCTC--ATGCACCCATCGCCCTCCCTTGTTCTCTCTCGCTCATGCGGCCGCCACCACCACCGACTCCTTCTCCCGTGATC
TCACGCTCGCCGCCGTCGAAGCCTTTCTTTCCCTCCCTCTCGCACACTCACCGGTGAGATGGAGCCAACCTGTTAAACTG
GAGGAGATCTCTATCGCGAGTCTGTGCGACCCAGTCAGACATCGCCACGATCAGCTCTCATGGGCATCATGCACGGGAGG
ATCACCAATCTGGCAGACTTCTGGTTGTTCTAGCAAACAAGGTTGGATGCGCCGGGAAGATCATCTTGGAGCAGCCCCAG
TAACTCTTGCAGGGACGAGCGAAGCTCTGCCTATGGCAAGGCAGGACGTACCTTGATTCTGGGAAATTTTTTGTTGAAAA
TGGACAGGCTGGTCGCTGGGATGGTTTGGGGTTCCACTGCTGGGCAAATAGAGTACGCGAATGAGTCTGCCATCCTCCTA
CGCCTCCTCGAGATGGACAACACGGTTTGGTTTTCAGTTCACATTTGT------------AGCTTGATTTCTAATCCATG
TGAATTTCTGTATAA--TTTTTTTCTGCAAAATTGTCCACATGGACCACATCTATCCAAATCATGATGATGATTATGGTA
CTTGTGTTTCTTGATTTTTT-TAGAACAAGATTTGGGAGTATTTCCACTACAT---------------------------
-------------GACGAGTCTGCTGTTTGTTTGATGATCAACTCAACCTGCTACATGCTGATTCTTTAGCTAAACCATA
TTATCTCATCGCGAGTTATAGTTGATTCGTTAGTTAAACCAGCTAGACGGTGATTAATTAAATCAATCTGCCACTTGACC
TGTCTATGGTTCAGCGATGGTAGATGCATG--------------TTCCGTGGCAAATTTTAGCTAGCTAGGAAACTACTT
ATGCCAATATGGGTTGTTTGTTTTATTTGGTACTTGCAGGCTGCAAACTTTGCTCTATCAAAGGAGGCAGTATTTGATGG
AAGGAAGTCTGGTCCCAGGGGCACATATGGACAGATGCATCTTGACTGCATGTCCATCAAAAACTTCACAAAGAAGAGCC
ATAAATCCACCAACAAGTTGGCCTGACGTCCACGCACTAGCACTGCCCTCCGACTGTGCGGCCTAATCCAAGAAGTAAGC
CGTACAGTAGCATATACGATCCTGTCAGAGTGATATTTTTATTTGTTGTCTCGTGTAATTGAAGAAAATGGG-AAAAGGA
AGTGTAGACACTAGGCAGAGCT-TTTTATGCAATGCATGCTTCTCATCACAATAGCATATATCTGTAGTTAGAGTATACT
AAGGTAGTACATCACAAGCCTATTCATATGATGGTGTCCATAAGAATCTATCTATCATGTAGTATATTTTAGCATGTACT
AATTTTGTATGAAATCAATGACAATTAATATGGATCGGAGGGTATAAATTAATTTCTGTAAGTCTTTGCTAATGTAAATC
CAAGCTGGATTCTTGACATTCCCGGAACTTCCTCATCACTTTTCTTTTGAGGGAATTCCCCCCACACTACTTAATGAAAA
AACACTGTATATTTTGTTGCTCCTAGCTTGCTTTGCATACTAGGTTCCTGGCATGGAGTAGTTTCTGAATAGTTTTACAA
-TGGTGACAAAGAAATAATTCTTTT-CCTTTTTCTATTATCGTGGAATCATGAGTTCATGACATATAATTTATTATTTGT
GTTCATACCTTCAAGGTGGATTATAACATGATGTACCTTGTCATTTTGTTTTCT-------------------TTCATAT
TCATGCAAACACTTCTATGAGAATATTGATTTTTTTTCACCCGTACTGAATTTTTCTGGAGCTATTGAAATATCCCCTTG
CACTTAAAATTTG-ACTACTACTGAAATTATATCAAGATACTCATACTTCTTGTTCTTGACTTTACCCTATTACTACTTT
TTTGTACTTAAATTAG--------------------CAAAAAGGTTGGCTATGTTCCTTTAAAATAGGTTGTCTGATGTG
CATGTTGATCCTCGTAAAGATATATGTTTGACATAGTCAATGTTGCACCACAAC-AAATTTATTACCCCCTTGCAACGCA
TGGGCAATTTCCTATTAATTAATATTTCCAT
>chr7D_1
TCCAGAGGCA--ACCCAACCGGCTAGCTATGTCTCGCACGG--GGGTTC-GATCGGCTTCAGTAAGCAGCAGCAGCGATC
GATCAAGTTCAGTTAGCAATGAAGGAGCTGGTCGGGTTCAGTTAGCAGCGAAGGGATCGATCGATCGGCTTCAATACGTG
GCAACACGCGATCGCTCGGGTTCAGT-AAGTGAACGCCTCTCGCTAGGGTTAAGTTATAGAGACATGGCTCGCACCACGC
GCGTGTA--CGAGA--GAAAAGCGCAAACT-CAGTGCATC--GCTCGGCCCCGACCAACCCACCGTAACCGGGAAATCCG
TGAAAATTTCCTCGCCCTCACTTCTACCACGATTTTTTATGTCATGGACGGCCCAAAGAATGTCATGCAGGTGCGTCCCC
GGCCCGCCCAGGATGAAAAGTCCATTTTCTGTCATGATTTTTTGTCATAGAAGTAGGAACCCACCACATCTATGATGATA
CGTGGTTTTGTCACAATTATCATCATAGAAGTGTCATAACCATGACAAAAAAACTTTTCGTTCGCGCCAAAATGTCATGG
ATGTGT--------------------------------------------------------------------------
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-------------------------------
>chr1D_1
TCCAGAGGCA--ACCCAACCGGCTAGCTACGTCTCGCACGG--GGGTTC-GACCGGCTTCAGTAAGCAGCAGCAGCGATC
GACTGGGTTCAGTTAGCAGCGAAGGAGTCGGTCAGGTTCAGATAGCAGCGAAGGGATCGATCGATCGGCTTTAGTACGTA
GCAGCACGCGATCGCTCGGGTTTAGT-AAGTGAATGCCTCTCGCTCGGGTTCAGTTATAGCGACACGGCTCGCACCACGT
GCGCGTA--CGAGA--GAAAAGCGCAAACCATAGTGCATA--GCTTGGCCCCGACCAACCCACCATAACCGGGAACTCCG
CGAAAATTTCCTCGCCCTCACTTCTACCATGATTTTTTATGTCATGGACGGGCCAAAGAATGTCATGCAGGTGCGTCCCT
GGCCCGCCCAGGAAGAAAATCCCATTTTTGGTCATGATTTTTTGTCATAGAAGTAGGAGCCCACCACATCTATGATGATA
CGTGGTTTTGTCACAATTATCGTCATAGAAGTGTCATAACCATGACAGAATTT-TTTTCGTTTGGGCCAAATTGTCACGG
ATGTGT--------------------------------------------------------------------------
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-------------------------------
>chr6D_1
TCCCGAAGCA--ACCCAACCGGCTAGCTACATCTCGCACGG--GGGTTC-GATCGGCTTCAGTAAGCAGCAGCAGTGATC
GATCGGGTTCAGTTTGTAGCGAAGGACTCGGTCGGGTTTAGTTAGCAGCGAAGGGATTGATTGATCGGCTTCAGTACGTA
GCAA--TGCGATCGCTTGGGTTCAGT-AAGTGAATGCCTCTCGCTCGGGTTCAGTTATAGCGACACGGCTCGCACCATGC
GCGCGTA--CGAGACAGAAAAACGCAAACCACACTGCATC--GCTCGGCCTCGACC-ACCCGCCGTAACCGGGAACTCCA
CGAAAATTTCCTCGCCCTCACTTCTACCATGATTTTTTATGTCACGGACGACCCAAAGAATGTCATGCAGGTGCTTCCTC
GGCCCGCCCAGGATGAAAAGCCCATTTTATGTCATGATTTTTTGTCATAGAAGTAGGAGCCCACCACATCTATGATGATA
CATGTTTTTGTCACAATTATCGTCATAGAAGTGTCATAACCATGACCGAATTT-TTTTCATTCGGGCCATAATGTAACGG
ATGTGT--------------------------------------------------------------------------
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-------------------------------
>chr6D_1
TCCAAAGGCA--ACCCAAACGGCTA-CTATGTCTCTCACGA--GGGTTT-TATCGGCTTTAGTAAGCAGCAACAGCGATC
GATCGGGTTCAGTTAGTAGTTAAGGAGTCCCTCGGGTTCAGTTAGCAGCGAAGGGATCGATCGATCGGCTTCAGTACGTA
GAAGCAGGCGATCGCTCGGGTTTAGT-AAGTGAACGCCCCTCACTCAGGTTCAGTTATAGCGACATGGCTCACACCACGC
GCGCGTA--CGAGA--GAAACGCGCAAACCACACTGCATCGTGCTCTGCCCCGACC-ACCCACCGTAACCGGGAACTCCG
TGAAAATTTCCTCGCCCTCACTTCTATCATGATTTTTTATGTCATGGATGGCCCAAAGAATGTCATGCAGGTGCATCCCC
GGCCCACCCAGGATGAAAAGCCCATTTTTTGTCATGATTTTTTATCATAGAAGTAGGAGCCCACCACATCTATGATGATA
CATGTTTTTGTCACAATTATCTTCATAGAAGTGTCATAACCATGCCAGAAAAA-AATCCGTTCGGTCCAAAATGTCATGA
TGTGT---------------------------------------------------------------------------
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-------------------------------
>chr6D_1
TCCAGAGGCAACCCCCAACCGGCTAGCTACATCTCGCACGG--GGGTTC-GATCGGCTTCAGTAAGCAGCAGCAGCGATC
AATCGGGTTCAGTTAGTAGCGAAGGAGTCAATCAGGTTTAGTCTGCAGCGAAGGGATCGATCGATCGGCTTCAGTACATA
GTAG--TGCAATCGCTCGGGTTCAGT-AAGCGAACACCTCTCGCTCGGGTTCAGTTATAGCGACACGGCTCGCACCACGT
GCGCGTGCGAGAGA--GAAACGTGCAAACCACACTGCATC--GCTCGGCCCCGACC-ACCCACCGTAACCGGGAACCCCG
TGAAAATTTCCTCGCCCTCACTTCTACCACGATTGTTTATGTCATGGACGGCCCAAAGAATGTCATGCAGGTGCATCCCC
GGCCCGCCGAGGATGAAAAGCCCATCTTTTGTTCTGATTTTTTGTCATAGAAGTAGGAGCCCACCACATCTATGATGATA
CATGTTTTTGTCACAATTATCGTCATAAAAGTGTCATGACCATGACATAAAAA-AATTCGTTCGGGCCATAATGTCACAG
ATGTG---------------------------------------------------------------------------
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-------------------------------
>chr1A_1
TCCAGAGGCA--ACCCAACCGGCTAGCTACGTCTCACACGA--GGGTTCTGATCGGCTTCAGTAAGCAGCAACAACGATC
GATCAGGTTTAGTTAGCAGCGAAGGAGTTGGTCAGGTTCAGTTAGCAGGGAAGGGATCGATCGATCGGCTTCAGTACGTA
GCAGCACGCGATCGCTCGGGTTCAGTAAAGTGAACGCCTCTCGCTCGGGTTCAGTTATAACGACATGGCTCGCACCACGC
ACGCGTA--CGAGA--GAAAAGCACAAACCACAGTGCATC--GCTCGACCCCGACCAACCCACCATAACCGGGAACTCCG
CGAAAATTTCCTCGCCCTCACTTCTACCATGATTTTTTATGTCATTGACGGCCCAAAGAATGTCATGCAGGTGCGTCCCC
GGCCCGCCGAGGACGAAAAGCCCATTTTCTGTCATGAACTTTTGTCATAGAAGTAGGAGCCCACCACATCTATGATGATA
CGTGCTTTTGTCACAATTATCGTCATAGAGGTGTCATAAGCATGACAA---TT-TTTTTGTTTGGCCCATAATGTCACGG
ATATGT--------------------------------------------------------------------------
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-------------------------------
>chr1A_1
TCCAGTGGCA--ACCCAACTGGCTAGCTACGTCTCGCACAC--GGGGTTCGACCAACTTCAGTAGGCAGCAGCAGCGATC
GATCGGGTTCAGCTAGGAGCGCAGGAGTCGATCGGGTTCAGTTAGCAGCGAAGGGATTGATCGATCGGCTTCAGTACGTA
GTAGCATGCGATCACTCGGGTTCAGT-AAGTGAACACCTCTCGCTCAGGTTCAGTTATAGCAACACGACTCGCACCACGC
GCGTGTA--CGAGA--GAAACACACAAACCACACTACATC--GCTCGGCCCCGACC-ACCCACCGTAACCGGGAACTCCA
CGAAAATTTCCTCGCCCTCACTTCTACCATGATTTTTTATGTCATGGACGGCCCAAGGAATGTCATGCAGGTGCGTCCCT
GGCCCGCCCAGGACAAAAAGACAATTTTCTATCATGATAATTTGTCATAGAAGTAGGAGCCCACCACATCTATGATGATA
TGTGGTTTTGTCATAGTTATCGTCATAGCAGTGTCATAACCATGACATAATTT-TTTT-GGTCGGGTCATAATGTCACGG
ATGTGT--------------------------------------------------------------------------
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-------------------------------
>chr2D_1
TCCAGAGGCA--CCCCAACAGGCTAGCTATGTCTCGCACTC---GGATTCGATCGGCTTCAGTAAGCAGCAACAACGATC
GATCGGGTTCAGGTAGCAGTGAAGGAGTCGGTCGGGTTCAGTTAGTAGTGAAGGGATCGATCGATCGGCTTCAGTATGTA
GCAGCACGTAATCGCTCGGATTCAGT-AAGTGAACGCCTCTCGCTTGGGTTCGGTTATAGCGACATGGCTCGCACCATGC
GCGCGTA--AGAGA--GAAAAGCGCAAACCACAGTGCATC--GCTCGGCCCCGACCAACCCACCGTAAGCAGGAACTCCA
CGAAAATTTCATCGCCCTCACTTCTACCATGATTTTTT-TGTCATGGACGGCCCAAAGAATGTCATGCAGGTGCGTCCCC
GTCCCACCCAGGACGAAAAGCCCATTTTCTATCATGATTTTTTGTCATATAAGTAGGAGCCCACCACATCTATGATGATA
CGTGGTTTTCTCACAATTATCGTCATAGAAGTTTCATAACCATGACATAATTT-TTTTCGTTCGGGCCAAAATGTCATAG
ATGTGTAT------------------------------------------------------------------------
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-------------------------------
>chr1B_3
--CAGAGGCA--ACCCAACCGGCTAGCTACGTCTTGTACG---GGGTTTCGATCGGCTTCAGTAAGCAGCAGTAGCGATC
GATTGGGTTTAGTTAGCAGCGAAGGAGTTGGTCAGGTTCAGTTAGCAGTGAAGGGATCGATTGATCGGCTTTAGTACATA
GCAGAACGCGATCGCTCGGGTTTAGT-AAGTGAACGCCTCTCGCCCGGGTTCAGTTATAGCGACACGGCTCGCACCACGC
GCGCATA--CTAGA--GAAAAGCTCAAACCACAGTGCATC--GCTCTGCCCTGACCAACCCACCGTAACTGGGAACTCCG
CGAAAATTTCCTCGCCCTCACTTCTACCATGATTTTTTATGTCATGGATGGCCCAAAGAATGTCATGCACGTGCGTCCCC
GGCCCGCCTAGGACGAAAAGCCCATTTTTTGTCATGATTTTTTGTCATAGAAGTAGGAGCCCACCACATCAATGATGATA
CGTGGTTTTGTCACAATTATCATCATAGAAGTGTCATAACCATGACAGAATTT-TTTCCGTTTGGGCCAAACTGTCATGG
ATGTGT--------------------------------------------------------------------------
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>chr4A_832
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--------------------------------------------AAAAACGCGTAGCATTCCTTTTCCTAGACCGCGTCC
TGCCTCCTTTCATCGATCGTCCCCCTCCAGCACGTGAGAAAAGGGCTCCCGTCCGCCCTCCCATACCGTTTTCTTCCCCT
TCTCTTCCCGCTGGTTATTTCTTTACACCAGATCAGATCCCGCCGCAACCGGCATGACCGCATCCAAGCAAAGCCCCCTC
TCTCTCATGCACCCATCGCCCTCCCCTATTCTCTCTCACTCACGCGGCCGCCACCACCACCGACTCCTTCTCCCGTGATC
TCAGGCTCGCCATCGTCGAAGCCTTTCTTTCCCTCCCTCTCACATGCTCACCGGTGAGATCGAGCCAAAATGCTAGATCG
GAGGAGATCTTTATCGCGAGTCTATGCGACCTAGTCAAACATTGCCACGGTCAACTCTCGTGGGCATCGTA---------
-------------------------TGTTCTAGTGAAGAAGGTCGGATGCGCCGAGAAGATCATCTTGAAGCAGCCCCAA
TAACTCTTGCAGGGACGGGCGGAGCCCCGCCTACCGCGAGGTAGGACGTACCTTCATTCTGGGCAAAGTTTTGTTG-AAA
TGGACGGGCTAGTCGCTGGGATGGTTTGGGGTTCCACTGCTAGGCAAATAGAGTACGCGAATGAGTCTTCCATCCTCCTC
CGCCTCCTCTGGATGGCCAACCCGATTTGGTTTTCAGTTCACATTTGT------------AGCTTGATTTCTAACCCATG
TGAATTTTTTTTATAATTT-TTGTCTGCAAAATTGTTCACATGGACCACATCTATCCAAATCGTGATGATGATTATGGTC
CTTGTGTTTCTTGATTTTTTG-AGTACCAGATTTGGGAGTATTTCCGCTACAT---------------------------
-------------GATGAGTGTACTGTTTGTTTGATGATCAACTCAACCTGCTACATGCTGATTGTTTAGCT--------
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>chr7D_1421
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---------------------------------------------------------------------------GAAAA
TGGACGGGCTGGTCGCTGGGATGGTTTGGGGTTCCACTGCTGGGGAAATAAAGTTCGCCAATGAGTCTGCCATCCTCCTC
CGCCTCCTCTAGATGGACAGCCCGGTTTGGTTTTCAGTTCACATTTGTCACGTTCTCTGAAGCTTGATTTGTAACCCATG
TGAATTTCTGTAATAATTTTTTGTCTGAAAAATTGTCCACATGGACCACAACTATCCAAATCGTGATGATGATTATGGTC
CTTGTGTTTCTTGATTTTTTTTAGTACAAGATTTGGGAGTATTTCCGCTACATCACGAACGTTGGAACCTCGAATAAGCT
TAACCTGCTACATGATGAGTCTGCTATTTGGTTGATGATCAACTTAACTAGCTACATGCTGATTGTTTAGCTAAACCATA
TTATCTCATCGCGAGTTATAGTTGATTCTTCAGTTAAACCAGCTAGATGGCGGTTAATTAAATCAATCTGCCACATGGCA
TGTCTATGGTTCAGTGACGGTAGATGCATGGAACTGATATCCAATTCCGTGGCAAATATTAGTTAGCTAGGAAACTACTT
ATGCCAATATGCATTGTTTGTTTTATTTGGTACTTGCAAGCTGCAGACTTTGCTCTATCAAAGGAGGCAGTATTTGATGG
AAGGAAGTCAGGTCCCAAGGGCACCTTCGGGCAGATGTATCTTGACTACCTGTCCATCAAAAAGTTCACAAAGAAGAGCC
ATAAATCCACCAACAAGTCGGCCTGGCGACCACGCACTAGCACTGCCCTCCGACTGTGCGGCCTAATCCAACAAGTAAGC
CGTACAGTAGCATATATGATCCTGTCAAAGTGATCTTTTGATTTGCTGTCTCATGTAATTGAAGAAAATGGAAAAAATGA
AGTGTAGGCACTAGGCAGAGCTGTTTTATGCAATTCATGTTTCTCGTCACAATAGCATATATCTGTAGTGAGAGGATACC
AAGATAGTACATCACAA---------------------------------------------------------------
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>chr4A_1757
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------------------------------------------------------------------TTAGCTAAACCATA
TTATCTCATCGCGGGTTATAGTTGATTCGTCAGTTAAACCAGCTAGACGGCGGTTAATTAAATCAATCCGCCACATGACC
TGTCTATGGTTCAGCGATGGTAGATGCATG--------------TTCCGTGGCAAATATTAGTTAGCTAGGAAGCTACTT
ATGCCAATATGCGTTGTTTGTTTTATTTTGTACTTGCAGGCTGCTGACTTTGCTTTATCAAAGGAGGCAGTATTCGATGG
AAGGAAGTCTGGTCACATGGGCACATATGGACAGATGCATCTTGACTGCATGTCCATCAAAAACTTCACAAAGAAGAGCC
ATAAACCCACCAACAAGTCAGCCTGACTTCCACACACTAGCACTGCCCTCCGACTGTGCGGCCTAATCCAACAAGTAATC
CGTACAGTAGCTTATACAATCTTGTCAGAGTGATATTTTGATTTGATGTCTCATGTAATTGAAAAAAATGGG-GGAAGGA
AGTGTAGGCACTAGGCAGAGCTGTTTTATGCAATGCATGCTTCTCATCACAATAGCATATATCTGTAGTTAGAGGATACC
AAAGTAGTACATTAGAAGCCTATTCATATGATGGTGTCCACAAGAACCTGTCTATCATGTAGTATATTTTAGCATGTACT
AATTTTGTACTCAATCAACGACAATTAATATGGATTGGAGGGTGCAAGTTAATTTATGTAAGTCTTTGCTAATGTAAATC
TAAGCTGGATTCTTGACATTCCCTGAATTTCCTCATCACTTTTCTATTGATCGAGTTTCCCCCACACTACTTAATGAAAA
AACAATGTATATTTT----------------------------------------------------------------A
-TGGTGACAAGGAAATAATTCTTTT-CCTTTTTC-ATTACCGTGGAATCACGAGTTCATGACATATAATGTATTATTTGT
GTTCATACCTTCAAGGTGGATTATAACATGATGTACCTTGTCATTTTG--TTCT-------------------TTCATAT
TCATGCAAACACTTCTTTGAGAATATTGAA--TTTTTCACCCGTACTGAATTTTTCTGGAGCTATTGAAATATCCCCTTG
CACTAAAAATTTG-ACTACTACTGAAATTATATCAAGATACTCATACTTCTTGTTCCTCACTTTACCCTGTTACTACTTT
GTTGTACTAAAATTAC--------------------CAAAAAGGTTGGCTATGTTCCTTTAAAATAGGTCGTCTGATGTG
CATGTTGATCCTCGTAAAGATATATGTTTGACACAGTCAATGTTGCACCATTAC-AAATTTATTATCCCCTTGCAACGCA
CAGCCAATTTCCTATTAATTAATATTTCCA-
>chr6D_2563
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--------ATATTTTTT-GCTCCTGGCTTGCTAGGCATTCTTTGTTCCTGGCTAGGAATAATTTCTGAACAGTTTTACAA
ATCGTGACAAAGAAATGGTTTGTTTACCTTTTTGTATGACCGTGGTATCATGATTTCATGACATATA-------------
------ACCTTTAATGTGGATTATAACATGATGTACCTTGTCATTACCTTTTCTTATCGAGGACTATTTTTGGTTCATAT
TCATGCAAACACTTCCCCGAGGATATTGAT--TTTTTCACCTGTACTGAACTTTTCTGGAGCTATTGAAACATCCCCTTG
CACTGAAA--TTT-ATTACTACTGAAAATTTGTCATGATACTTGGACTTCTTGTACTTGAATGTACCCTGTTA-----GT
GTTGTACTGAAATTTACCTTGATTGCACTAAAATTACAAAAAGGTTGGCTATGTTTCATTAAAATAAGTCATCTGATCTG
CATGTTGATCCTCCCAAAGATATATGTTTGACACAGTCAATGTTGCACCGCTAGAATATTTATGCCCCTGTTGCAACACA
GGG-CAATTTCCTAGTAATAATA--------
>chr6D_2567
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------------TTTTT-GCTCCTGGCTTGCTAGGCATACTTTGTTCCTGGCTAGGAATAGTTTCTAAACAGTTTTACAA
ATGGTGACAAAGAAATGGTTTGTTTACTTTCTTGTGTGACCGTGGAATCATGAGTTCATGACATATA-------------
------ACCTTTAATGTGGATTATAACATGATGTACCTT-----------TCCTGATCTAGGACTATTTTTGGTTCATAT
TCATGCAAGCACTTCTCTGAGGATATTGAA--TTTTTCACCTGTACTGAACTTTTCTGGAGCTATTGAAACATCCCCTTG
CACTGAAA--TTTGACTACTACTGAAATTTTGTCAAGATACTTGGACTTCTTGGACTTGAATGTACCCTGTTA-----GT
GTTGTACTGAAATTTACCTTGTTTGTACTGAAATTACAAAAAGGCTGGTTC-GTTTCTTTAAAATTAGTCATCTGATGTG
CATGTTGATCCTCCCAAAGATATATGTTTGACACAGTCAATGTTGCACCGCTAGAATATTTATGCCCCCGTTGCAACACA
GGGGGAATTTCCTAGTTATAATA--------
>chr2D_2567
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------------TTTTT-GCTCCTGGCTTGCTAGGCATACTTTGTTCCTGGCTAGGAATACTTTCTGACCAGTTTTACCA
ATGGTGACAAAGAAATGGTTTGTTTACTTTCTTGTATGACCGTGGAATCATGAGTTCATGACATATA-------------
------ACCTTTAATGTGGATTATAACATGATGTACCTTTTG-TTACCTTTCCTGATCGAGGACTATTTTTGGTTCATAT
TCATGCAAGCACTTCTCTGAGGATATTGAA--TTTTTCACCTGTACTGAACTTTTCTGGAGCTATTGAAACATCCCCTTG
CACTGAAA--TTTGACTACTACTGAAATTTTGTCAAGATACTTGGACTTCTTGGACTTGAATGTACCCTGTTA-----TT
GTTGTACTGAAATTTACCTTGTTTGTACTAAAATTACAAAAAGGCTGGTTC-GTTTCTTTAAAATAAGTCATCTGATGTG
CATGTTGATCCTCCCAAAGATATATGTTTGACAGAGTCAATGTTGCACTGCTAGAATATTTATGCCCCCATTGCAACACA
GGGGGAATTTCCTAGTAATAATA--------
>SNPs
-----------------------------------------SS-----------------------S-------------
-------------------------------S------S----------S-----------------S------------
-----------------S------S----S-------------------------S----------------------S-
-S------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
------------------------------------S-------------------------------------------
----------------------------S------------------------S-------------------S------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------------S----------
-------S---S----------------S----SS--------S----S------------------------------S
-------S-S--S---S---SS----------------------S-S-----------S---------------------
-------------------------S-S---------S----S-------------------------------------
---S-------SS----------------------------S--SS--------------S-------SS--S--S-SS-
----------S------------S-------S-----S----S------S---S-----S--------S-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--------SS--S-----S----------S-------------S----------S
-----------------S---S---S-S-----SS--S---S------------S--------S--SS------------
-----S-------------------------------------------------------------------------S
---------S-----------S----------------------------------------------------S-----
------------SS--------S---------------------------------------S----------------S
------------------------S---------------------S---------------------------------
---------------S------------------------------------------------S---------------
------------------------------S-------------------S-S---------------------S-----
---------------------------------------------------------S----S-----------------
-----------S---------------------------------S----------------------------------
-----------------S--------------------------------------------------------------
------------------S----------------------------------------------------S--------
---------------------------------------S-----S------S---------------------------
-------S------------------------------------------------------------------S----S
----------------------------------------S-----S--S------------------------------
---------SSS------S----------------S-------SS--S-------S------------------------
S----------------------S---S-----------------S----SS--S--S----------------------
----S----------S-S------S-------SS-------SS---------SS---S-----------S----------
---------------------------------------S-----------------------------S----------
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----------------S-------------SS------------------------------------------------
----S----------------------------------------------------------------S----------
S-------S------S-----------------------------------------------------S----------
---------------------------------S-----------------S----------------------------
S-----------------------------S
>forward_638
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----------------------------------------------------------TCCACCACTTTTGCTGGGTT--
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>reverse_2658
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-----------------TGCTCCTAGCTTGCTTTGCA-------------------------------------------
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-------------------------------
