Multiple sequence alignment - TraesCS7A01G280200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G280200 chr7A 100.000 2482 0 0 1 2482 299431363 299428882 0.000000e+00 4584.0
1 TraesCS7A01G280200 chr7A 80.000 240 27 7 5 240 577670289 577670067 9.190000e-35 158.0
2 TraesCS7A01G280200 chr4A 97.398 1499 38 1 378 1875 420019588 420018090 0.000000e+00 2551.0
3 TraesCS7A01G280200 chr4A 94.087 389 10 3 1 380 420020007 420019623 1.650000e-161 579.0
4 TraesCS7A01G280200 chr3D 97.398 1499 38 1 378 1875 30970501 30971999 0.000000e+00 2551.0
5 TraesCS7A01G280200 chr3D 96.195 1498 53 3 378 1875 477613448 477611955 0.000000e+00 2447.0
6 TraesCS7A01G280200 chr3D 91.800 1500 102 8 378 1875 412103228 412104708 0.000000e+00 2069.0
7 TraesCS7A01G280200 chr5B 97.333 1500 33 4 378 1875 634121454 634119960 0.000000e+00 2542.0
8 TraesCS7A01G280200 chr5B 89.706 68 2 5 1871 1936 589436041 589435977 5.690000e-12 82.4
9 TraesCS7A01G280200 chr5B 89.706 68 2 5 1871 1936 589447206 589447142 5.690000e-12 82.4
10 TraesCS7A01G280200 chr2D 96.933 1500 40 5 378 1875 52284411 52285906 0.000000e+00 2510.0
11 TraesCS7A01G280200 chr2A 95.664 1499 61 4 378 1875 315762632 315764127 0.000000e+00 2405.0
12 TraesCS7A01G280200 chr2A 94.350 354 14 2 1 354 6476566 6476913 2.810000e-149 538.0
13 TraesCS7A01G280200 chr2A 84.899 298 20 10 450 746 755370074 755370347 6.760000e-71 278.0
14 TraesCS7A01G280200 chr2A 88.889 81 8 1 1875 1954 284603401 284603481 5.650000e-17 99.0
15 TraesCS7A01G280200 chr1A 97.482 1112 28 0 764 1875 558014399 558015510 0.000000e+00 1899.0
16 TraesCS7A01G280200 chr1A 97.686 389 9 0 378 766 558001291 558001679 0.000000e+00 669.0
17 TraesCS7A01G280200 chr1A 94.602 389 8 2 1 380 558000872 558001256 7.650000e-165 590.0
18 TraesCS7A01G280200 chr1A 91.566 83 6 1 1873 1954 32522324 32522406 2.020000e-21 113.0
19 TraesCS7A01G280200 chr6D 93.231 458 25 4 1422 1875 169715444 169715899 0.000000e+00 669.0
20 TraesCS7A01G280200 chr6D 91.473 258 22 0 1001 1258 169714691 169714948 3.040000e-94 355.0
21 TraesCS7A01G280200 chr7B 96.610 354 8 1 1 354 125885507 125885856 3.560000e-163 584.0
22 TraesCS7A01G280200 chr7B 89.136 359 26 6 1 351 83991471 83991118 3.790000e-118 435.0
23 TraesCS7A01G280200 chr3B 89.474 361 24 7 1 352 99766373 99766728 6.300000e-121 444.0
24 TraesCS7A01G280200 chrUn 90.854 164 15 0 1258 1421 394864045 394864208 1.160000e-53 220.0
25 TraesCS7A01G280200 chr7D 81.435 237 26 5 5 240 33058149 33057930 7.050000e-41 178.0
26 TraesCS7A01G280200 chr7D 91.228 57 5 0 1875 1931 8620326 8620270 7.360000e-11 78.7
27 TraesCS7A01G280200 chr5A 79.087 263 32 7 5 264 543954590 543954348 2.560000e-35 159.0
28 TraesCS7A01G280200 chr5A 87.671 73 8 1 1 72 414527218 414527290 1.580000e-12 84.2
29 TraesCS7A01G280200 chr2B 91.954 87 6 1 871 957 568669832 568669917 1.210000e-23 121.0
30 TraesCS7A01G280200 chr1B 91.667 72 6 0 1875 1946 159407177 159407248 1.570000e-17 100.0
31 TraesCS7A01G280200 chr1B 90.625 64 2 4 1875 1936 647467496 647467435 5.690000e-12 82.4
32 TraesCS7A01G280200 chr4B 90.411 73 7 0 1874 1946 3761835 3761907 2.030000e-16 97.1
33 TraesCS7A01G280200 chr3A 89.394 66 7 0 1867 1932 54458608 54458543 1.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G280200 chr7A 299428882 299431363 2481 True 4584.0 4584 100.0000 1 2482 1 chr7A.!!$R1 2481
1 TraesCS7A01G280200 chr4A 420018090 420020007 1917 True 1565.0 2551 95.7425 1 1875 2 chr4A.!!$R1 1874
2 TraesCS7A01G280200 chr3D 30970501 30971999 1498 False 2551.0 2551 97.3980 378 1875 1 chr3D.!!$F1 1497
3 TraesCS7A01G280200 chr3D 477611955 477613448 1493 True 2447.0 2447 96.1950 378 1875 1 chr3D.!!$R1 1497
4 TraesCS7A01G280200 chr3D 412103228 412104708 1480 False 2069.0 2069 91.8000 378 1875 1 chr3D.!!$F2 1497
5 TraesCS7A01G280200 chr5B 634119960 634121454 1494 True 2542.0 2542 97.3330 378 1875 1 chr5B.!!$R3 1497
6 TraesCS7A01G280200 chr2D 52284411 52285906 1495 False 2510.0 2510 96.9330 378 1875 1 chr2D.!!$F1 1497
7 TraesCS7A01G280200 chr2A 315762632 315764127 1495 False 2405.0 2405 95.6640 378 1875 1 chr2A.!!$F3 1497
8 TraesCS7A01G280200 chr1A 558014399 558015510 1111 False 1899.0 1899 97.4820 764 1875 1 chr1A.!!$F2 1111
9 TraesCS7A01G280200 chr1A 558000872 558001679 807 False 629.5 669 96.1440 1 766 2 chr1A.!!$F3 765
10 TraesCS7A01G280200 chr6D 169714691 169715899 1208 False 512.0 669 92.3520 1001 1875 2 chr6D.!!$F1 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 318 1.135257 GCTCGTGCAGTGATAGAGTGT 60.135 52.381 4.26 0.0 39.41 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2300 0.107214 TGGCTTCCTATCGCCCTTTG 60.107 55.0 0.0 0.0 45.71 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.820578 ATAGTACGAAGGAACTATAGCAAGT 57.179 36.000 0.00 0.00 38.49 3.16
139 149 4.162320 CCCATGACTATATGCGGTTCCTAT 59.838 45.833 0.00 0.00 0.00 2.57
140 150 5.362717 CCCATGACTATATGCGGTTCCTATA 59.637 44.000 0.00 0.00 0.00 1.31
141 151 6.127168 CCCATGACTATATGCGGTTCCTATAA 60.127 42.308 0.00 0.00 0.00 0.98
142 152 7.419057 CCCATGACTATATGCGGTTCCTATAAT 60.419 40.741 0.00 0.00 0.00 1.28
267 277 9.050601 GTTATTTTTCCAGATCAAGATCGAGAT 57.949 33.333 4.54 3.05 42.48 2.75
286 296 5.624738 CGAGATATAGACAAGGGGTAATGGC 60.625 48.000 0.00 0.00 0.00 4.40
308 318 1.135257 GCTCGTGCAGTGATAGAGTGT 60.135 52.381 4.26 0.00 39.41 3.55
337 347 2.813908 CCGGTGTCGTTGCCTAGC 60.814 66.667 0.00 0.00 33.95 3.42
585 633 8.325787 TCCATAGTAATAAACTTGTGGTCACAT 58.674 33.333 4.53 0.00 40.77 3.21
779 829 4.202441 AGGACCAACATTAGCAGCAATAG 58.798 43.478 0.00 0.00 0.00 1.73
950 1004 5.163622 GCAGCCTAGAATTTTTAGACATGCA 60.164 40.000 0.00 0.00 0.00 3.96
1448 1841 8.866093 TCAATTGCCATTGATAATGATTCAGAT 58.134 29.630 9.05 0.00 43.32 2.90
1699 2097 6.262273 GGATTGAGCTTTTTGTTATCCCGATA 59.738 38.462 0.00 0.00 0.00 2.92
1822 2221 1.773856 TTGACCAACATGGCCGGAGA 61.774 55.000 5.05 0.00 42.67 3.71
1826 2225 0.180171 CCAACATGGCCGGAGATGTA 59.820 55.000 16.62 0.00 32.40 2.29
1875 2274 6.036953 CCAGTCTCTCATGCTTTATTCTTCAC 59.963 42.308 0.00 0.00 0.00 3.18
1876 2275 6.817641 CAGTCTCTCATGCTTTATTCTTCACT 59.182 38.462 0.00 0.00 0.00 3.41
1877 2276 7.978414 CAGTCTCTCATGCTTTATTCTTCACTA 59.022 37.037 0.00 0.00 0.00 2.74
1878 2277 8.196771 AGTCTCTCATGCTTTATTCTTCACTAG 58.803 37.037 0.00 0.00 0.00 2.57
1879 2278 8.194104 GTCTCTCATGCTTTATTCTTCACTAGA 58.806 37.037 0.00 0.00 0.00 2.43
1880 2279 8.922237 TCTCTCATGCTTTATTCTTCACTAGAT 58.078 33.333 0.00 0.00 31.54 1.98
1881 2280 8.883954 TCTCATGCTTTATTCTTCACTAGATG 57.116 34.615 0.00 0.00 31.54 2.90
1882 2281 8.699130 TCTCATGCTTTATTCTTCACTAGATGA 58.301 33.333 0.00 0.00 34.65 2.92
1883 2282 8.654230 TCATGCTTTATTCTTCACTAGATGAC 57.346 34.615 0.00 0.00 36.92 3.06
1884 2283 8.481314 TCATGCTTTATTCTTCACTAGATGACT 58.519 33.333 0.00 0.00 36.92 3.41
1885 2284 8.763356 CATGCTTTATTCTTCACTAGATGACTC 58.237 37.037 0.00 0.00 36.92 3.36
1886 2285 6.975197 TGCTTTATTCTTCACTAGATGACTCG 59.025 38.462 0.00 0.00 36.92 4.18
1887 2286 6.975772 GCTTTATTCTTCACTAGATGACTCGT 59.024 38.462 0.00 0.00 36.92 4.18
1888 2287 7.489757 GCTTTATTCTTCACTAGATGACTCGTT 59.510 37.037 0.00 0.00 36.92 3.85
1889 2288 8.689251 TTTATTCTTCACTAGATGACTCGTTG 57.311 34.615 0.00 0.00 36.92 4.10
1890 2289 4.098055 TCTTCACTAGATGACTCGTTGC 57.902 45.455 0.00 0.00 36.92 4.17
1891 2290 2.544480 TCACTAGATGACTCGTTGCG 57.456 50.000 0.00 0.00 29.99 4.85
1892 2291 0.917259 CACTAGATGACTCGTTGCGC 59.083 55.000 0.00 0.00 0.00 6.09
1893 2292 0.179134 ACTAGATGACTCGTTGCGCC 60.179 55.000 4.18 0.00 0.00 6.53
1894 2293 0.872021 CTAGATGACTCGTTGCGCCC 60.872 60.000 4.18 0.00 0.00 6.13
1895 2294 1.600511 TAGATGACTCGTTGCGCCCA 61.601 55.000 4.18 0.00 0.00 5.36
1896 2295 1.815421 GATGACTCGTTGCGCCCAT 60.815 57.895 4.18 0.00 0.00 4.00
1897 2296 2.040213 GATGACTCGTTGCGCCCATG 62.040 60.000 4.18 0.00 0.00 3.66
1898 2297 3.499737 GACTCGTTGCGCCCATGG 61.500 66.667 4.18 4.14 0.00 3.66
1918 2317 2.025719 GCAAAGGGCGATAGGAAGC 58.974 57.895 0.00 0.00 0.00 3.86
1969 2368 9.768662 AAAAATCAGACTGCATCAATTTTTACT 57.231 25.926 16.80 1.74 40.04 2.24
1970 2369 8.976986 AAATCAGACTGCATCAATTTTTACTC 57.023 30.769 0.00 0.00 0.00 2.59
1971 2370 7.934855 ATCAGACTGCATCAATTTTTACTCT 57.065 32.000 0.00 0.00 0.00 3.24
1972 2371 7.137490 TCAGACTGCATCAATTTTTACTCTG 57.863 36.000 0.00 0.00 0.00 3.35
1973 2372 6.712095 TCAGACTGCATCAATTTTTACTCTGT 59.288 34.615 0.00 0.00 0.00 3.41
1974 2373 7.877612 TCAGACTGCATCAATTTTTACTCTGTA 59.122 33.333 0.00 0.00 0.00 2.74
1975 2374 8.671921 CAGACTGCATCAATTTTTACTCTGTAT 58.328 33.333 0.00 0.00 0.00 2.29
1976 2375 9.890629 AGACTGCATCAATTTTTACTCTGTATA 57.109 29.630 0.00 0.00 0.00 1.47
2008 2407 6.861065 AGCGTAAACAAATAGATATGTGGG 57.139 37.500 0.00 0.00 0.00 4.61
2009 2408 6.354130 AGCGTAAACAAATAGATATGTGGGT 58.646 36.000 0.00 0.00 0.00 4.51
2010 2409 7.502696 AGCGTAAACAAATAGATATGTGGGTA 58.497 34.615 0.00 0.00 0.00 3.69
2011 2410 8.154856 AGCGTAAACAAATAGATATGTGGGTAT 58.845 33.333 0.00 0.00 0.00 2.73
2012 2411 8.227791 GCGTAAACAAATAGATATGTGGGTATG 58.772 37.037 0.00 0.00 0.00 2.39
2013 2412 9.483916 CGTAAACAAATAGATATGTGGGTATGA 57.516 33.333 0.00 0.00 0.00 2.15
2015 2414 7.986085 AACAAATAGATATGTGGGTATGAGC 57.014 36.000 0.00 0.00 0.00 4.26
2016 2415 7.321717 ACAAATAGATATGTGGGTATGAGCT 57.678 36.000 0.00 0.00 0.00 4.09
2017 2416 8.435931 ACAAATAGATATGTGGGTATGAGCTA 57.564 34.615 0.00 0.00 0.00 3.32
2018 2417 8.880244 ACAAATAGATATGTGGGTATGAGCTAA 58.120 33.333 0.00 0.00 0.00 3.09
2019 2418 9.725019 CAAATAGATATGTGGGTATGAGCTAAA 57.275 33.333 0.00 0.00 0.00 1.85
2024 2423 9.646522 AGATATGTGGGTATGAGCTAAATTTTT 57.353 29.630 0.00 0.00 0.00 1.94
2052 2451 9.369904 TCATGCCTTTTAAAAAGAGAAATATGC 57.630 29.630 1.66 0.00 0.00 3.14
2053 2452 9.374838 CATGCCTTTTAAAAAGAGAAATATGCT 57.625 29.630 1.66 0.00 0.00 3.79
2054 2453 9.948964 ATGCCTTTTAAAAAGAGAAATATGCTT 57.051 25.926 1.66 0.00 0.00 3.91
2066 2465 8.108551 AGAGAAATATGCTTATGAAATCCAGC 57.891 34.615 0.00 0.00 34.24 4.85
2067 2466 7.722728 AGAGAAATATGCTTATGAAATCCAGCA 59.277 33.333 0.00 0.00 44.19 4.41
2068 2467 8.241497 AGAAATATGCTTATGAAATCCAGCAA 57.759 30.769 0.00 0.00 43.54 3.91
2069 2468 8.358148 AGAAATATGCTTATGAAATCCAGCAAG 58.642 33.333 0.00 0.00 43.54 4.01
2070 2469 7.592885 AATATGCTTATGAAATCCAGCAAGT 57.407 32.000 0.00 0.00 43.54 3.16
2071 2470 4.707030 TGCTTATGAAATCCAGCAAGTG 57.293 40.909 0.00 0.00 39.16 3.16
2072 2471 4.334552 TGCTTATGAAATCCAGCAAGTGA 58.665 39.130 0.00 0.00 39.16 3.41
2073 2472 4.766373 TGCTTATGAAATCCAGCAAGTGAA 59.234 37.500 0.00 0.00 39.16 3.18
2074 2473 5.419788 TGCTTATGAAATCCAGCAAGTGAAT 59.580 36.000 0.00 0.00 39.16 2.57
2075 2474 6.602803 TGCTTATGAAATCCAGCAAGTGAATA 59.397 34.615 0.00 0.00 39.16 1.75
2076 2475 7.286087 TGCTTATGAAATCCAGCAAGTGAATAT 59.714 33.333 0.00 0.00 39.16 1.28
2077 2476 8.139989 GCTTATGAAATCCAGCAAGTGAATATT 58.860 33.333 0.00 0.00 33.92 1.28
2087 2486 9.219603 TCCAGCAAGTGAATATTATAAGTATGC 57.780 33.333 0.00 0.00 0.00 3.14
2088 2487 9.002600 CCAGCAAGTGAATATTATAAGTATGCA 57.997 33.333 0.00 0.00 0.00 3.96
2101 2500 9.716507 ATTATAAGTATGCATTGACACGAAAAC 57.283 29.630 3.54 0.00 0.00 2.43
2102 2501 5.689383 AAGTATGCATTGACACGAAAACT 57.311 34.783 3.54 0.00 0.00 2.66
2103 2502 5.689383 AGTATGCATTGACACGAAAACTT 57.311 34.783 3.54 0.00 0.00 2.66
2104 2503 6.072112 AGTATGCATTGACACGAAAACTTT 57.928 33.333 3.54 0.00 0.00 2.66
2105 2504 6.503524 AGTATGCATTGACACGAAAACTTTT 58.496 32.000 3.54 0.00 0.00 2.27
2106 2505 6.978080 AGTATGCATTGACACGAAAACTTTTT 59.022 30.769 3.54 0.00 0.00 1.94
2168 2567 9.710900 AAATAAAGAATTGAATGGAGTTTGACC 57.289 29.630 0.00 0.00 0.00 4.02
2169 2568 6.983906 AAAGAATTGAATGGAGTTTGACCT 57.016 33.333 0.00 0.00 0.00 3.85
2170 2569 6.983906 AAGAATTGAATGGAGTTTGACCTT 57.016 33.333 0.00 0.00 0.00 3.50
2171 2570 6.983906 AGAATTGAATGGAGTTTGACCTTT 57.016 33.333 0.00 0.00 0.00 3.11
2172 2571 7.365497 AGAATTGAATGGAGTTTGACCTTTT 57.635 32.000 0.00 0.00 0.00 2.27
2173 2572 7.795047 AGAATTGAATGGAGTTTGACCTTTTT 58.205 30.769 0.00 0.00 0.00 1.94
2174 2573 8.923270 AGAATTGAATGGAGTTTGACCTTTTTA 58.077 29.630 0.00 0.00 0.00 1.52
2175 2574 9.196552 GAATTGAATGGAGTTTGACCTTTTTAG 57.803 33.333 0.00 0.00 0.00 1.85
2176 2575 7.889873 TTGAATGGAGTTTGACCTTTTTAGA 57.110 32.000 0.00 0.00 0.00 2.10
2177 2576 8.477419 TTGAATGGAGTTTGACCTTTTTAGAT 57.523 30.769 0.00 0.00 0.00 1.98
2178 2577 9.581289 TTGAATGGAGTTTGACCTTTTTAGATA 57.419 29.630 0.00 0.00 0.00 1.98
2179 2578 9.010029 TGAATGGAGTTTGACCTTTTTAGATAC 57.990 33.333 0.00 0.00 0.00 2.24
2180 2579 9.232473 GAATGGAGTTTGACCTTTTTAGATACT 57.768 33.333 0.00 0.00 0.00 2.12
2181 2580 9.588096 AATGGAGTTTGACCTTTTTAGATACTT 57.412 29.630 0.00 0.00 0.00 2.24
2182 2581 8.990163 TGGAGTTTGACCTTTTTAGATACTTT 57.010 30.769 0.00 0.00 0.00 2.66
2183 2582 9.416284 TGGAGTTTGACCTTTTTAGATACTTTT 57.584 29.630 0.00 0.00 0.00 2.27
2200 2599 5.966742 ACTTTTAGTTGAAGATCCCTTGC 57.033 39.130 0.00 0.00 31.62 4.01
2201 2600 5.385198 ACTTTTAGTTGAAGATCCCTTGCA 58.615 37.500 0.00 0.00 31.62 4.08
2202 2601 5.833131 ACTTTTAGTTGAAGATCCCTTGCAA 59.167 36.000 0.00 0.00 31.62 4.08
2203 2602 6.323739 ACTTTTAGTTGAAGATCCCTTGCAAA 59.676 34.615 0.00 0.00 31.62 3.68
2204 2603 6.723298 TTTAGTTGAAGATCCCTTGCAAAA 57.277 33.333 0.00 0.00 31.62 2.44
2205 2604 6.916360 TTAGTTGAAGATCCCTTGCAAAAT 57.084 33.333 0.00 0.00 31.62 1.82
2206 2605 8.415950 TTTAGTTGAAGATCCCTTGCAAAATA 57.584 30.769 0.00 0.00 31.62 1.40
2207 2606 6.916360 AGTTGAAGATCCCTTGCAAAATAA 57.084 33.333 0.00 0.00 31.62 1.40
2208 2607 6.928520 AGTTGAAGATCCCTTGCAAAATAAG 58.071 36.000 0.00 0.00 31.62 1.73
2209 2608 5.329035 TGAAGATCCCTTGCAAAATAAGC 57.671 39.130 0.00 0.00 31.62 3.09
2210 2609 4.771577 TGAAGATCCCTTGCAAAATAAGCA 59.228 37.500 0.00 0.00 40.85 3.91
2211 2610 4.996788 AGATCCCTTGCAAAATAAGCAG 57.003 40.909 0.00 0.00 43.75 4.24
2212 2611 3.131755 AGATCCCTTGCAAAATAAGCAGC 59.868 43.478 0.00 0.00 43.75 5.25
2213 2612 2.246469 TCCCTTGCAAAATAAGCAGCA 58.754 42.857 0.00 0.00 43.75 4.41
2214 2613 2.632028 TCCCTTGCAAAATAAGCAGCAA 59.368 40.909 0.00 0.00 43.75 3.91
2215 2614 2.738314 CCCTTGCAAAATAAGCAGCAAC 59.262 45.455 0.00 0.00 43.75 4.17
2216 2615 2.409378 CCTTGCAAAATAAGCAGCAACG 59.591 45.455 0.00 0.00 43.75 4.10
2217 2616 2.791383 TGCAAAATAAGCAGCAACGT 57.209 40.000 0.00 0.00 37.02 3.99
2218 2617 3.906014 TGCAAAATAAGCAGCAACGTA 57.094 38.095 0.00 0.00 37.02 3.57
2219 2618 4.230314 TGCAAAATAAGCAGCAACGTAA 57.770 36.364 0.00 0.00 37.02 3.18
2220 2619 4.804108 TGCAAAATAAGCAGCAACGTAAT 58.196 34.783 0.00 0.00 37.02 1.89
2221 2620 5.226396 TGCAAAATAAGCAGCAACGTAATT 58.774 33.333 0.00 0.00 37.02 1.40
2222 2621 5.118357 TGCAAAATAAGCAGCAACGTAATTG 59.882 36.000 0.00 0.00 38.01 2.32
2223 2622 5.118510 GCAAAATAAGCAGCAACGTAATTGT 59.881 36.000 0.00 0.00 40.77 2.71
2224 2623 6.346518 GCAAAATAAGCAGCAACGTAATTGTT 60.347 34.615 0.00 0.00 40.77 2.83
2225 2624 6.927933 AAATAAGCAGCAACGTAATTGTTC 57.072 33.333 0.00 0.00 40.77 3.18
2226 2625 5.880054 ATAAGCAGCAACGTAATTGTTCT 57.120 34.783 0.00 0.00 40.77 3.01
2227 2626 4.568152 AAGCAGCAACGTAATTGTTCTT 57.432 36.364 0.00 0.00 40.77 2.52
2228 2627 5.682943 AAGCAGCAACGTAATTGTTCTTA 57.317 34.783 0.00 0.00 40.77 2.10
2229 2628 5.880054 AGCAGCAACGTAATTGTTCTTAT 57.120 34.783 0.00 0.00 40.77 1.73
2230 2629 6.254281 AGCAGCAACGTAATTGTTCTTATT 57.746 33.333 0.00 0.00 40.77 1.40
2231 2630 6.677913 AGCAGCAACGTAATTGTTCTTATTT 58.322 32.000 0.00 0.00 40.77 1.40
2232 2631 7.145323 AGCAGCAACGTAATTGTTCTTATTTT 58.855 30.769 0.00 0.00 40.77 1.82
2233 2632 7.651704 AGCAGCAACGTAATTGTTCTTATTTTT 59.348 29.630 0.00 0.00 40.77 1.94
2234 2633 7.944649 GCAGCAACGTAATTGTTCTTATTTTTC 59.055 33.333 0.00 0.00 40.77 2.29
2235 2634 9.180678 CAGCAACGTAATTGTTCTTATTTTTCT 57.819 29.630 0.00 0.00 40.77 2.52
2236 2635 9.744468 AGCAACGTAATTGTTCTTATTTTTCTT 57.256 25.926 0.00 0.00 40.77 2.52
2240 2639 9.522804 ACGTAATTGTTCTTATTTTTCTTTGCA 57.477 25.926 0.00 0.00 0.00 4.08
2241 2640 9.777843 CGTAATTGTTCTTATTTTTCTTTGCAC 57.222 29.630 0.00 0.00 0.00 4.57
2247 2646 9.462174 TGTTCTTATTTTTCTTTGCACATACTG 57.538 29.630 0.00 0.00 0.00 2.74
2248 2647 9.463443 GTTCTTATTTTTCTTTGCACATACTGT 57.537 29.630 0.00 0.00 0.00 3.55
2263 2662 6.041423 ACATACTGTGATCACAAGACATGA 57.959 37.500 27.63 9.57 41.33 3.07
2264 2663 6.647229 ACATACTGTGATCACAAGACATGAT 58.353 36.000 27.63 14.80 41.33 2.45
2265 2664 7.108194 ACATACTGTGATCACAAGACATGATT 58.892 34.615 27.63 11.25 41.33 2.57
2266 2665 8.260114 ACATACTGTGATCACAAGACATGATTA 58.740 33.333 27.63 9.86 41.33 1.75
2267 2666 6.974932 ACTGTGATCACAAGACATGATTAC 57.025 37.500 27.63 3.64 41.24 1.89
2268 2667 6.466812 ACTGTGATCACAAGACATGATTACA 58.533 36.000 27.63 10.86 45.52 2.41
2269 2668 6.973229 TGTGATCACAAGACATGATTACAG 57.027 37.500 26.02 0.00 43.92 2.74
2270 2669 6.700352 TGTGATCACAAGACATGATTACAGA 58.300 36.000 26.02 0.00 43.92 3.41
2271 2670 7.160726 TGTGATCACAAGACATGATTACAGAA 58.839 34.615 26.02 0.00 43.92 3.02
2272 2671 7.661027 TGTGATCACAAGACATGATTACAGAAA 59.339 33.333 26.02 0.00 43.92 2.52
2273 2672 8.506437 GTGATCACAAGACATGATTACAGAAAA 58.494 33.333 21.07 0.00 40.80 2.29
2274 2673 9.234827 TGATCACAAGACATGATTACAGAAAAT 57.765 29.630 0.00 0.00 36.92 1.82
2275 2674 9.713740 GATCACAAGACATGATTACAGAAAATC 57.286 33.333 0.00 0.00 36.92 2.17
2276 2675 8.853077 TCACAAGACATGATTACAGAAAATCT 57.147 30.769 0.00 0.00 36.90 2.40
2277 2676 9.288576 TCACAAGACATGATTACAGAAAATCTT 57.711 29.630 0.00 0.00 36.90 2.40
2278 2677 9.903682 CACAAGACATGATTACAGAAAATCTTT 57.096 29.630 0.00 0.00 36.90 2.52
2303 2702 5.581126 TCAAAGCATTGAAGTGAAAGTGT 57.419 34.783 1.05 0.00 42.47 3.55
2304 2703 5.342433 TCAAAGCATTGAAGTGAAAGTGTG 58.658 37.500 1.05 0.00 42.47 3.82
2305 2704 3.360249 AGCATTGAAGTGAAAGTGTGC 57.640 42.857 0.00 0.00 0.00 4.57
2306 2705 2.689471 AGCATTGAAGTGAAAGTGTGCA 59.311 40.909 0.00 0.00 34.01 4.57
2307 2706 3.319972 AGCATTGAAGTGAAAGTGTGCAT 59.680 39.130 0.00 0.00 34.01 3.96
2308 2707 4.520111 AGCATTGAAGTGAAAGTGTGCATA 59.480 37.500 0.00 0.00 34.01 3.14
2309 2708 4.855388 GCATTGAAGTGAAAGTGTGCATAG 59.145 41.667 0.00 0.00 0.00 2.23
2310 2709 5.335113 GCATTGAAGTGAAAGTGTGCATAGA 60.335 40.000 0.00 0.00 0.00 1.98
2311 2710 6.671190 CATTGAAGTGAAAGTGTGCATAGAA 58.329 36.000 0.00 0.00 0.00 2.10
2312 2711 5.929697 TGAAGTGAAAGTGTGCATAGAAG 57.070 39.130 0.00 0.00 0.00 2.85
2313 2712 4.756642 TGAAGTGAAAGTGTGCATAGAAGG 59.243 41.667 0.00 0.00 0.00 3.46
2314 2713 4.623932 AGTGAAAGTGTGCATAGAAGGA 57.376 40.909 0.00 0.00 0.00 3.36
2315 2714 4.573900 AGTGAAAGTGTGCATAGAAGGAG 58.426 43.478 0.00 0.00 0.00 3.69
2316 2715 4.284490 AGTGAAAGTGTGCATAGAAGGAGA 59.716 41.667 0.00 0.00 0.00 3.71
2317 2716 4.629200 GTGAAAGTGTGCATAGAAGGAGAG 59.371 45.833 0.00 0.00 0.00 3.20
2318 2717 3.902881 AAGTGTGCATAGAAGGAGAGG 57.097 47.619 0.00 0.00 0.00 3.69
2319 2718 2.826488 AGTGTGCATAGAAGGAGAGGT 58.174 47.619 0.00 0.00 0.00 3.85
2320 2719 3.177228 AGTGTGCATAGAAGGAGAGGTT 58.823 45.455 0.00 0.00 0.00 3.50
2321 2720 3.055530 AGTGTGCATAGAAGGAGAGGTTG 60.056 47.826 0.00 0.00 0.00 3.77
2322 2721 2.906389 TGTGCATAGAAGGAGAGGTTGT 59.094 45.455 0.00 0.00 0.00 3.32
2323 2722 3.327757 TGTGCATAGAAGGAGAGGTTGTT 59.672 43.478 0.00 0.00 0.00 2.83
2324 2723 4.202461 TGTGCATAGAAGGAGAGGTTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
2325 2724 4.393371 GTGCATAGAAGGAGAGGTTGTTTC 59.607 45.833 0.00 0.00 0.00 2.78
2326 2725 4.287067 TGCATAGAAGGAGAGGTTGTTTCT 59.713 41.667 0.00 0.00 33.15 2.52
2327 2726 5.221925 TGCATAGAAGGAGAGGTTGTTTCTT 60.222 40.000 0.00 0.00 31.19 2.52
2328 2727 5.707764 GCATAGAAGGAGAGGTTGTTTCTTT 59.292 40.000 0.00 0.00 31.19 2.52
2329 2728 6.879458 GCATAGAAGGAGAGGTTGTTTCTTTA 59.121 38.462 0.00 0.00 31.19 1.85
2330 2729 7.390718 GCATAGAAGGAGAGGTTGTTTCTTTAA 59.609 37.037 0.00 0.00 31.19 1.52
2331 2730 9.454859 CATAGAAGGAGAGGTTGTTTCTTTAAT 57.545 33.333 0.00 0.00 31.19 1.40
2361 2760 9.877178 AGTGTTCTGGAAATAACAGTAGAATAG 57.123 33.333 0.00 0.00 37.46 1.73
2362 2761 8.604890 GTGTTCTGGAAATAACAGTAGAATAGC 58.395 37.037 0.00 0.00 36.33 2.97
2363 2762 8.318412 TGTTCTGGAAATAACAGTAGAATAGCA 58.682 33.333 0.00 0.00 37.25 3.49
2364 2763 9.162764 GTTCTGGAAATAACAGTAGAATAGCAA 57.837 33.333 0.00 0.00 37.25 3.91
2365 2764 9.905713 TTCTGGAAATAACAGTAGAATAGCAAT 57.094 29.630 0.00 0.00 37.25 3.56
2366 2765 9.547753 TCTGGAAATAACAGTAGAATAGCAATC 57.452 33.333 0.00 0.00 37.25 2.67
2367 2766 8.677148 TGGAAATAACAGTAGAATAGCAATCC 57.323 34.615 0.00 0.00 0.00 3.01
2368 2767 8.494433 TGGAAATAACAGTAGAATAGCAATCCT 58.506 33.333 0.00 0.00 0.00 3.24
2369 2768 9.998106 GGAAATAACAGTAGAATAGCAATCCTA 57.002 33.333 0.00 0.00 0.00 2.94
2405 2804 6.734104 AAGTGATGATAAACTGCTCTTGAC 57.266 37.500 0.00 0.00 0.00 3.18
2406 2805 5.181748 AGTGATGATAAACTGCTCTTGACC 58.818 41.667 0.00 0.00 0.00 4.02
2407 2806 4.937620 GTGATGATAAACTGCTCTTGACCA 59.062 41.667 0.00 0.00 0.00 4.02
2408 2807 4.937620 TGATGATAAACTGCTCTTGACCAC 59.062 41.667 0.00 0.00 0.00 4.16
2409 2808 4.350368 TGATAAACTGCTCTTGACCACA 57.650 40.909 0.00 0.00 0.00 4.17
2410 2809 4.318332 TGATAAACTGCTCTTGACCACAG 58.682 43.478 0.00 0.00 36.22 3.66
2411 2810 4.040339 TGATAAACTGCTCTTGACCACAGA 59.960 41.667 0.00 0.00 34.25 3.41
2412 2811 2.540265 AACTGCTCTTGACCACAGAG 57.460 50.000 0.00 0.00 34.25 3.35
2413 2812 1.709578 ACTGCTCTTGACCACAGAGA 58.290 50.000 1.00 0.00 34.25 3.10
2414 2813 2.255406 ACTGCTCTTGACCACAGAGAT 58.745 47.619 1.00 0.00 34.25 2.75
2415 2814 3.435275 ACTGCTCTTGACCACAGAGATA 58.565 45.455 1.00 0.00 34.25 1.98
2416 2815 3.834813 ACTGCTCTTGACCACAGAGATAA 59.165 43.478 1.00 0.00 34.25 1.75
2417 2816 4.180057 CTGCTCTTGACCACAGAGATAAC 58.820 47.826 1.00 0.00 31.67 1.89
2418 2817 3.182967 GCTCTTGACCACAGAGATAACG 58.817 50.000 1.00 0.00 31.79 3.18
2419 2818 3.119459 GCTCTTGACCACAGAGATAACGA 60.119 47.826 1.00 0.00 31.79 3.85
2420 2819 4.618460 GCTCTTGACCACAGAGATAACGAA 60.618 45.833 1.00 0.00 31.79 3.85
2421 2820 5.462530 TCTTGACCACAGAGATAACGAAA 57.537 39.130 0.00 0.00 0.00 3.46
2422 2821 6.037786 TCTTGACCACAGAGATAACGAAAT 57.962 37.500 0.00 0.00 0.00 2.17
2423 2822 6.100004 TCTTGACCACAGAGATAACGAAATC 58.900 40.000 0.00 0.00 0.00 2.17
2424 2823 5.661056 TGACCACAGAGATAACGAAATCT 57.339 39.130 4.33 4.33 38.95 2.40
2425 2824 6.769134 TGACCACAGAGATAACGAAATCTA 57.231 37.500 4.61 0.00 36.33 1.98
2426 2825 7.165460 TGACCACAGAGATAACGAAATCTAA 57.835 36.000 4.61 0.00 36.33 2.10
2427 2826 7.608153 TGACCACAGAGATAACGAAATCTAAA 58.392 34.615 4.61 0.00 36.33 1.85
2428 2827 7.759886 TGACCACAGAGATAACGAAATCTAAAG 59.240 37.037 4.61 1.95 36.33 1.85
2429 2828 7.612677 ACCACAGAGATAACGAAATCTAAAGT 58.387 34.615 4.61 2.43 36.33 2.66
2430 2829 8.095169 ACCACAGAGATAACGAAATCTAAAGTT 58.905 33.333 4.61 0.00 36.33 2.66
2431 2830 8.936864 CCACAGAGATAACGAAATCTAAAGTTT 58.063 33.333 4.61 0.00 36.33 2.66
2441 2840 8.997621 ACGAAATCTAAAGTTTATAGACTGCA 57.002 30.769 0.00 0.00 32.50 4.41
2442 2841 8.870879 ACGAAATCTAAAGTTTATAGACTGCAC 58.129 33.333 0.00 0.00 32.50 4.57
2443 2842 8.328864 CGAAATCTAAAGTTTATAGACTGCACC 58.671 37.037 0.00 0.00 32.50 5.01
2444 2843 9.162764 GAAATCTAAAGTTTATAGACTGCACCA 57.837 33.333 0.00 0.00 32.50 4.17
2445 2844 9.686683 AAATCTAAAGTTTATAGACTGCACCAT 57.313 29.630 0.00 0.00 32.50 3.55
2446 2845 9.686683 AATCTAAAGTTTATAGACTGCACCATT 57.313 29.630 0.00 0.00 32.50 3.16
2447 2846 8.718102 TCTAAAGTTTATAGACTGCACCATTC 57.282 34.615 0.00 0.00 0.00 2.67
2448 2847 8.318412 TCTAAAGTTTATAGACTGCACCATTCA 58.682 33.333 0.00 0.00 0.00 2.57
2449 2848 6.743575 AAGTTTATAGACTGCACCATTCAC 57.256 37.500 0.00 0.00 0.00 3.18
2450 2849 6.054860 AGTTTATAGACTGCACCATTCACT 57.945 37.500 0.00 0.00 0.00 3.41
2451 2850 7.182817 AGTTTATAGACTGCACCATTCACTA 57.817 36.000 0.00 0.00 0.00 2.74
2452 2851 7.042335 AGTTTATAGACTGCACCATTCACTAC 58.958 38.462 0.00 0.00 0.00 2.73
2453 2852 6.791867 TTATAGACTGCACCATTCACTACT 57.208 37.500 0.00 0.00 0.00 2.57
2454 2853 5.683876 ATAGACTGCACCATTCACTACTT 57.316 39.130 0.00 0.00 0.00 2.24
2455 2854 4.357918 AGACTGCACCATTCACTACTTT 57.642 40.909 0.00 0.00 0.00 2.66
2456 2855 4.718961 AGACTGCACCATTCACTACTTTT 58.281 39.130 0.00 0.00 0.00 2.27
2457 2856 4.757149 AGACTGCACCATTCACTACTTTTC 59.243 41.667 0.00 0.00 0.00 2.29
2458 2857 4.460263 ACTGCACCATTCACTACTTTTCA 58.540 39.130 0.00 0.00 0.00 2.69
2459 2858 4.275936 ACTGCACCATTCACTACTTTTCAC 59.724 41.667 0.00 0.00 0.00 3.18
2460 2859 3.568007 TGCACCATTCACTACTTTTCACC 59.432 43.478 0.00 0.00 0.00 4.02
2461 2860 3.568007 GCACCATTCACTACTTTTCACCA 59.432 43.478 0.00 0.00 0.00 4.17
2462 2861 4.218417 GCACCATTCACTACTTTTCACCAT 59.782 41.667 0.00 0.00 0.00 3.55
2463 2862 5.414454 GCACCATTCACTACTTTTCACCATA 59.586 40.000 0.00 0.00 0.00 2.74
2464 2863 6.403636 GCACCATTCACTACTTTTCACCATAG 60.404 42.308 0.00 0.00 0.00 2.23
2465 2864 6.878923 CACCATTCACTACTTTTCACCATAGA 59.121 38.462 0.00 0.00 0.00 1.98
2466 2865 7.065085 CACCATTCACTACTTTTCACCATAGAG 59.935 40.741 0.00 0.00 0.00 2.43
2467 2866 6.540189 CCATTCACTACTTTTCACCATAGAGG 59.460 42.308 0.00 0.00 45.67 3.69
2468 2867 5.086104 TCACTACTTTTCACCATAGAGGC 57.914 43.478 0.00 0.00 43.14 4.70
2469 2868 4.530553 TCACTACTTTTCACCATAGAGGCA 59.469 41.667 0.00 0.00 43.14 4.75
2470 2869 4.872691 CACTACTTTTCACCATAGAGGCAG 59.127 45.833 0.00 0.00 43.14 4.85
2471 2870 2.716217 ACTTTTCACCATAGAGGCAGC 58.284 47.619 0.00 0.00 43.14 5.25
2472 2871 2.040278 ACTTTTCACCATAGAGGCAGCA 59.960 45.455 0.00 0.00 43.14 4.41
2473 2872 2.877097 TTTCACCATAGAGGCAGCAA 57.123 45.000 0.00 0.00 43.14 3.91
2474 2873 3.370840 TTTCACCATAGAGGCAGCAAT 57.629 42.857 0.00 0.00 43.14 3.56
2475 2874 2.336945 TCACCATAGAGGCAGCAATG 57.663 50.000 0.00 0.00 43.14 2.82
2476 2875 1.134007 TCACCATAGAGGCAGCAATGG 60.134 52.381 11.73 11.73 43.73 3.16
2477 2876 1.134007 CACCATAGAGGCAGCAATGGA 60.134 52.381 17.58 0.00 41.20 3.41
2478 2877 1.565759 ACCATAGAGGCAGCAATGGAA 59.434 47.619 17.58 0.00 41.20 3.53
2479 2878 2.228059 CCATAGAGGCAGCAATGGAAG 58.772 52.381 8.83 0.00 41.20 3.46
2480 2879 2.158711 CCATAGAGGCAGCAATGGAAGA 60.159 50.000 8.83 0.00 41.20 2.87
2481 2880 2.698855 TAGAGGCAGCAATGGAAGAC 57.301 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.118847 TGCTTGGCAAACTCAACAATTCA 60.119 39.130 0.00 0.00 34.76 2.57
140 150 9.206870 CATTAAACATGCAACAGGAGTTTAATT 57.793 29.630 19.30 10.36 45.57 1.40
142 152 7.946207 TCATTAAACATGCAACAGGAGTTTAA 58.054 30.769 15.91 15.91 44.07 1.52
267 277 3.072476 GCTGCCATTACCCCTTGTCTATA 59.928 47.826 0.00 0.00 0.00 1.31
286 296 1.133982 ACTCTATCACTGCACGAGCTG 59.866 52.381 10.00 10.00 44.36 4.24
631 680 4.787551 TGGAAACCTAAAGAGCAGACAAA 58.212 39.130 0.00 0.00 0.00 2.83
1099 1154 2.096248 AGAGTCAGGTTCGAAGCTAGG 58.904 52.381 27.89 17.42 34.49 3.02
1399 1792 5.766150 ATCGAACTCATCTCTACTTCTGG 57.234 43.478 0.00 0.00 0.00 3.86
1448 1841 1.480137 CAAGGGTGGTGCAAACTCAAA 59.520 47.619 3.66 0.00 0.00 2.69
1699 2097 6.455360 TTGAACAGAGTTTGCTTTCAAGAT 57.545 33.333 0.00 0.00 33.12 2.40
1822 2221 6.119536 TCTCTGTTGTCAGTTTGGTTTACAT 58.880 36.000 0.00 0.00 41.91 2.29
1826 2225 6.431234 GGATATCTCTGTTGTCAGTTTGGTTT 59.569 38.462 2.05 0.00 41.91 3.27
1875 2274 0.872021 GGGCGCAACGAGTCATCTAG 60.872 60.000 10.83 0.00 0.00 2.43
1876 2275 1.141019 GGGCGCAACGAGTCATCTA 59.859 57.895 10.83 0.00 0.00 1.98
1877 2276 2.125512 GGGCGCAACGAGTCATCT 60.126 61.111 10.83 0.00 0.00 2.90
1878 2277 1.815421 ATGGGCGCAACGAGTCATC 60.815 57.895 10.83 0.00 0.00 2.92
1879 2278 2.108514 CATGGGCGCAACGAGTCAT 61.109 57.895 10.83 0.00 0.00 3.06
1880 2279 2.741985 CATGGGCGCAACGAGTCA 60.742 61.111 10.83 0.00 0.00 3.41
1881 2280 3.499737 CCATGGGCGCAACGAGTC 61.500 66.667 10.83 0.00 0.00 3.36
1900 2299 1.448119 GGCTTCCTATCGCCCTTTGC 61.448 60.000 0.00 0.00 40.43 3.68
1901 2300 0.107214 TGGCTTCCTATCGCCCTTTG 60.107 55.000 0.00 0.00 45.71 2.77
1902 2301 0.623723 TTGGCTTCCTATCGCCCTTT 59.376 50.000 0.00 0.00 45.71 3.11
1903 2302 0.181350 CTTGGCTTCCTATCGCCCTT 59.819 55.000 0.00 0.00 45.71 3.95
1904 2303 0.983378 ACTTGGCTTCCTATCGCCCT 60.983 55.000 0.00 0.00 45.71 5.19
1905 2304 0.756903 TACTTGGCTTCCTATCGCCC 59.243 55.000 0.00 0.00 45.71 6.13
1906 2305 2.808543 CAATACTTGGCTTCCTATCGCC 59.191 50.000 0.00 0.00 46.46 5.54
1907 2306 3.728845 TCAATACTTGGCTTCCTATCGC 58.271 45.455 0.00 0.00 0.00 4.58
1908 2307 6.049149 TCTTTCAATACTTGGCTTCCTATCG 58.951 40.000 0.00 0.00 0.00 2.92
1909 2308 7.011857 CACTCTTTCAATACTTGGCTTCCTATC 59.988 40.741 0.00 0.00 0.00 2.08
1910 2309 6.825721 CACTCTTTCAATACTTGGCTTCCTAT 59.174 38.462 0.00 0.00 0.00 2.57
1911 2310 6.173339 CACTCTTTCAATACTTGGCTTCCTA 58.827 40.000 0.00 0.00 0.00 2.94
1912 2311 5.006386 CACTCTTTCAATACTTGGCTTCCT 58.994 41.667 0.00 0.00 0.00 3.36
1913 2312 4.762251 ACACTCTTTCAATACTTGGCTTCC 59.238 41.667 0.00 0.00 0.00 3.46
1914 2313 5.693814 CACACTCTTTCAATACTTGGCTTC 58.306 41.667 0.00 0.00 0.00 3.86
1915 2314 4.022849 GCACACTCTTTCAATACTTGGCTT 60.023 41.667 0.00 0.00 0.00 4.35
1916 2315 3.503748 GCACACTCTTTCAATACTTGGCT 59.496 43.478 0.00 0.00 0.00 4.75
1917 2316 3.253188 TGCACACTCTTTCAATACTTGGC 59.747 43.478 0.00 0.00 0.00 4.52
1918 2317 5.633830 ATGCACACTCTTTCAATACTTGG 57.366 39.130 0.00 0.00 0.00 3.61
1919 2318 9.462174 TTTTTATGCACACTCTTTCAATACTTG 57.538 29.630 0.00 0.00 0.00 3.16
1943 2342 9.768662 AGTAAAAATTGATGCAGTCTGATTTTT 57.231 25.926 18.45 18.45 41.12 1.94
1944 2343 9.415544 GAGTAAAAATTGATGCAGTCTGATTTT 57.584 29.630 3.32 3.91 36.12 1.82
1945 2344 8.800332 AGAGTAAAAATTGATGCAGTCTGATTT 58.200 29.630 3.32 0.00 0.00 2.17
1946 2345 8.242053 CAGAGTAAAAATTGATGCAGTCTGATT 58.758 33.333 3.32 0.00 36.15 2.57
1947 2346 7.392673 ACAGAGTAAAAATTGATGCAGTCTGAT 59.607 33.333 3.32 0.00 37.07 2.90
1948 2347 6.712095 ACAGAGTAAAAATTGATGCAGTCTGA 59.288 34.615 3.32 0.00 37.07 3.27
1949 2348 6.906659 ACAGAGTAAAAATTGATGCAGTCTG 58.093 36.000 0.00 0.00 38.71 3.51
1950 2349 8.798859 ATACAGAGTAAAAATTGATGCAGTCT 57.201 30.769 0.00 0.00 0.00 3.24
1982 2381 9.647797 CCCACATATCTATTTGTTTACGCTATA 57.352 33.333 0.00 0.00 0.00 1.31
1983 2382 8.154856 ACCCACATATCTATTTGTTTACGCTAT 58.845 33.333 0.00 0.00 0.00 2.97
1984 2383 7.502696 ACCCACATATCTATTTGTTTACGCTA 58.497 34.615 0.00 0.00 0.00 4.26
1985 2384 6.354130 ACCCACATATCTATTTGTTTACGCT 58.646 36.000 0.00 0.00 0.00 5.07
1986 2385 6.613755 ACCCACATATCTATTTGTTTACGC 57.386 37.500 0.00 0.00 0.00 4.42
1987 2386 9.483916 TCATACCCACATATCTATTTGTTTACG 57.516 33.333 0.00 0.00 0.00 3.18
1989 2388 9.502091 GCTCATACCCACATATCTATTTGTTTA 57.498 33.333 0.00 0.00 0.00 2.01
1990 2389 8.220559 AGCTCATACCCACATATCTATTTGTTT 58.779 33.333 0.00 0.00 0.00 2.83
1991 2390 7.749666 AGCTCATACCCACATATCTATTTGTT 58.250 34.615 0.00 0.00 0.00 2.83
1992 2391 7.321717 AGCTCATACCCACATATCTATTTGT 57.678 36.000 0.00 0.00 0.00 2.83
1993 2392 9.725019 TTTAGCTCATACCCACATATCTATTTG 57.275 33.333 0.00 0.00 0.00 2.32
1998 2397 9.646522 AAAAATTTAGCTCATACCCACATATCT 57.353 29.630 0.00 0.00 0.00 1.98
2026 2425 9.369904 GCATATTTCTCTTTTTAAAAGGCATGA 57.630 29.630 16.21 7.98 0.00 3.07
2027 2426 9.374838 AGCATATTTCTCTTTTTAAAAGGCATG 57.625 29.630 16.21 11.30 0.00 4.06
2028 2427 9.948964 AAGCATATTTCTCTTTTTAAAAGGCAT 57.051 25.926 16.21 7.05 0.00 4.40
2040 2439 8.574737 GCTGGATTTCATAAGCATATTTCTCTT 58.425 33.333 0.00 0.00 35.69 2.85
2041 2440 7.722728 TGCTGGATTTCATAAGCATATTTCTCT 59.277 33.333 0.00 0.00 40.59 3.10
2042 2441 7.879070 TGCTGGATTTCATAAGCATATTTCTC 58.121 34.615 0.00 0.00 40.59 2.87
2043 2442 7.828508 TGCTGGATTTCATAAGCATATTTCT 57.171 32.000 0.00 0.00 40.59 2.52
2044 2443 8.139989 ACTTGCTGGATTTCATAAGCATATTTC 58.860 33.333 0.00 0.00 44.58 2.17
2045 2444 7.924412 CACTTGCTGGATTTCATAAGCATATTT 59.076 33.333 0.00 0.00 44.58 1.40
2046 2445 7.286087 TCACTTGCTGGATTTCATAAGCATATT 59.714 33.333 0.00 0.00 44.58 1.28
2047 2446 6.774170 TCACTTGCTGGATTTCATAAGCATAT 59.226 34.615 0.00 0.00 44.58 1.78
2048 2447 6.121590 TCACTTGCTGGATTTCATAAGCATA 58.878 36.000 0.00 0.00 44.58 3.14
2049 2448 4.951715 TCACTTGCTGGATTTCATAAGCAT 59.048 37.500 0.00 0.00 44.58 3.79
2050 2449 4.334552 TCACTTGCTGGATTTCATAAGCA 58.665 39.130 0.00 0.00 43.60 3.91
2051 2450 4.970662 TCACTTGCTGGATTTCATAAGC 57.029 40.909 0.00 0.00 36.18 3.09
2061 2460 9.219603 GCATACTTATAATATTCACTTGCTGGA 57.780 33.333 0.00 0.00 0.00 3.86
2062 2461 9.002600 TGCATACTTATAATATTCACTTGCTGG 57.997 33.333 0.00 0.00 0.00 4.85
2075 2474 9.716507 GTTTTCGTGTCAATGCATACTTATAAT 57.283 29.630 0.00 0.00 0.00 1.28
2076 2475 8.941977 AGTTTTCGTGTCAATGCATACTTATAA 58.058 29.630 0.00 0.00 0.00 0.98
2077 2476 8.487313 AGTTTTCGTGTCAATGCATACTTATA 57.513 30.769 0.00 0.00 0.00 0.98
2078 2477 7.377766 AGTTTTCGTGTCAATGCATACTTAT 57.622 32.000 0.00 0.00 0.00 1.73
2079 2478 6.795098 AGTTTTCGTGTCAATGCATACTTA 57.205 33.333 0.00 0.00 0.00 2.24
2080 2479 5.689383 AGTTTTCGTGTCAATGCATACTT 57.311 34.783 0.00 0.00 0.00 2.24
2081 2480 5.689383 AAGTTTTCGTGTCAATGCATACT 57.311 34.783 0.00 0.00 0.00 2.12
2082 2481 6.747659 AAAAGTTTTCGTGTCAATGCATAC 57.252 33.333 0.00 0.00 0.00 2.39
2142 2541 9.710900 GGTCAAACTCCATTCAATTCTTTATTT 57.289 29.630 0.00 0.00 0.00 1.40
2143 2542 9.093458 AGGTCAAACTCCATTCAATTCTTTATT 57.907 29.630 0.00 0.00 0.00 1.40
2144 2543 8.655935 AGGTCAAACTCCATTCAATTCTTTAT 57.344 30.769 0.00 0.00 0.00 1.40
2145 2544 8.477419 AAGGTCAAACTCCATTCAATTCTTTA 57.523 30.769 0.00 0.00 0.00 1.85
2146 2545 6.983906 AGGTCAAACTCCATTCAATTCTTT 57.016 33.333 0.00 0.00 0.00 2.52
2147 2546 6.983906 AAGGTCAAACTCCATTCAATTCTT 57.016 33.333 0.00 0.00 0.00 2.52
2148 2547 6.983906 AAAGGTCAAACTCCATTCAATTCT 57.016 33.333 0.00 0.00 0.00 2.40
2149 2548 9.196552 CTAAAAAGGTCAAACTCCATTCAATTC 57.803 33.333 0.00 0.00 0.00 2.17
2150 2549 8.923270 TCTAAAAAGGTCAAACTCCATTCAATT 58.077 29.630 0.00 0.00 0.00 2.32
2151 2550 8.477419 TCTAAAAAGGTCAAACTCCATTCAAT 57.523 30.769 0.00 0.00 0.00 2.57
2152 2551 7.889873 TCTAAAAAGGTCAAACTCCATTCAA 57.110 32.000 0.00 0.00 0.00 2.69
2153 2552 9.010029 GTATCTAAAAAGGTCAAACTCCATTCA 57.990 33.333 0.00 0.00 0.00 2.57
2154 2553 9.232473 AGTATCTAAAAAGGTCAAACTCCATTC 57.768 33.333 0.00 0.00 0.00 2.67
2155 2554 9.588096 AAGTATCTAAAAAGGTCAAACTCCATT 57.412 29.630 0.00 0.00 0.00 3.16
2156 2555 9.588096 AAAGTATCTAAAAAGGTCAAACTCCAT 57.412 29.630 0.00 0.00 0.00 3.41
2157 2556 8.990163 AAAGTATCTAAAAAGGTCAAACTCCA 57.010 30.769 0.00 0.00 0.00 3.86
2174 2573 7.554476 GCAAGGGATCTTCAACTAAAAGTATCT 59.446 37.037 0.00 0.00 0.00 1.98
2175 2574 7.336931 TGCAAGGGATCTTCAACTAAAAGTATC 59.663 37.037 0.00 0.00 0.00 2.24
2176 2575 7.175104 TGCAAGGGATCTTCAACTAAAAGTAT 58.825 34.615 0.00 0.00 0.00 2.12
2177 2576 6.539173 TGCAAGGGATCTTCAACTAAAAGTA 58.461 36.000 0.00 0.00 0.00 2.24
2178 2577 5.385198 TGCAAGGGATCTTCAACTAAAAGT 58.615 37.500 0.00 0.00 0.00 2.66
2179 2578 5.964958 TGCAAGGGATCTTCAACTAAAAG 57.035 39.130 0.00 0.00 0.00 2.27
2180 2579 6.723298 TTTGCAAGGGATCTTCAACTAAAA 57.277 33.333 0.00 0.00 0.00 1.52
2181 2580 6.723298 TTTTGCAAGGGATCTTCAACTAAA 57.277 33.333 0.00 0.00 0.00 1.85
2182 2581 6.916360 ATTTTGCAAGGGATCTTCAACTAA 57.084 33.333 0.00 0.00 0.00 2.24
2183 2582 7.362920 GCTTATTTTGCAAGGGATCTTCAACTA 60.363 37.037 0.00 0.00 0.00 2.24
2184 2583 6.573094 GCTTATTTTGCAAGGGATCTTCAACT 60.573 38.462 0.00 0.00 0.00 3.16
2185 2584 5.578336 GCTTATTTTGCAAGGGATCTTCAAC 59.422 40.000 0.00 0.00 0.00 3.18
2186 2585 5.245751 TGCTTATTTTGCAAGGGATCTTCAA 59.754 36.000 0.00 0.00 37.51 2.69
2187 2586 4.771577 TGCTTATTTTGCAAGGGATCTTCA 59.228 37.500 0.00 0.00 37.51 3.02
2188 2587 5.329035 TGCTTATTTTGCAAGGGATCTTC 57.671 39.130 0.00 0.00 37.51 2.87
2189 2588 4.382362 GCTGCTTATTTTGCAAGGGATCTT 60.382 41.667 0.00 0.00 40.13 2.40
2190 2589 3.131755 GCTGCTTATTTTGCAAGGGATCT 59.868 43.478 0.00 0.00 40.13 2.75
2191 2590 3.119029 TGCTGCTTATTTTGCAAGGGATC 60.119 43.478 0.00 0.00 40.13 3.36
2192 2591 2.833338 TGCTGCTTATTTTGCAAGGGAT 59.167 40.909 0.00 0.00 40.13 3.85
2193 2592 2.246469 TGCTGCTTATTTTGCAAGGGA 58.754 42.857 0.00 0.00 40.13 4.20
2194 2593 2.738314 GTTGCTGCTTATTTTGCAAGGG 59.262 45.455 0.00 0.00 44.48 3.95
2195 2594 2.409378 CGTTGCTGCTTATTTTGCAAGG 59.591 45.455 0.00 0.00 44.48 3.61
2196 2595 3.052036 ACGTTGCTGCTTATTTTGCAAG 58.948 40.909 0.00 0.00 44.48 4.01
2197 2596 3.090952 ACGTTGCTGCTTATTTTGCAA 57.909 38.095 0.00 0.00 42.16 4.08
2198 2597 2.791383 ACGTTGCTGCTTATTTTGCA 57.209 40.000 0.00 0.00 38.81 4.08
2199 2598 5.118510 ACAATTACGTTGCTGCTTATTTTGC 59.881 36.000 0.00 0.00 41.69 3.68
2200 2599 6.689178 ACAATTACGTTGCTGCTTATTTTG 57.311 33.333 0.00 0.00 41.69 2.44
2201 2600 7.145323 AGAACAATTACGTTGCTGCTTATTTT 58.855 30.769 0.00 0.00 41.69 1.82
2202 2601 6.677913 AGAACAATTACGTTGCTGCTTATTT 58.322 32.000 0.00 0.00 41.69 1.40
2203 2602 6.254281 AGAACAATTACGTTGCTGCTTATT 57.746 33.333 0.00 0.00 41.69 1.40
2204 2603 5.880054 AGAACAATTACGTTGCTGCTTAT 57.120 34.783 0.00 0.00 41.69 1.73
2205 2604 5.682943 AAGAACAATTACGTTGCTGCTTA 57.317 34.783 0.00 0.00 41.69 3.09
2206 2605 4.568152 AAGAACAATTACGTTGCTGCTT 57.432 36.364 0.00 0.00 41.69 3.91
2207 2606 5.880054 ATAAGAACAATTACGTTGCTGCT 57.120 34.783 0.00 0.00 41.69 4.24
2208 2607 6.927933 AAATAAGAACAATTACGTTGCTGC 57.072 33.333 0.00 0.00 41.69 5.25
2209 2608 9.180678 AGAAAAATAAGAACAATTACGTTGCTG 57.819 29.630 0.00 0.00 41.69 4.41
2210 2609 9.744468 AAGAAAAATAAGAACAATTACGTTGCT 57.256 25.926 0.00 0.00 41.69 3.91
2214 2613 9.522804 TGCAAAGAAAAATAAGAACAATTACGT 57.477 25.926 0.00 0.00 0.00 3.57
2215 2614 9.777843 GTGCAAAGAAAAATAAGAACAATTACG 57.222 29.630 0.00 0.00 0.00 3.18
2221 2620 9.462174 CAGTATGTGCAAAGAAAAATAAGAACA 57.538 29.630 0.00 0.00 0.00 3.18
2240 2639 7.108194 AATCATGTCTTGTGATCACAGTATGT 58.892 34.615 26.48 12.76 42.51 2.29
2241 2640 7.549615 AATCATGTCTTGTGATCACAGTATG 57.450 36.000 26.48 24.60 42.94 2.39
2242 2641 8.260114 TGTAATCATGTCTTGTGATCACAGTAT 58.740 33.333 26.48 16.59 42.94 2.12
2243 2642 7.610865 TGTAATCATGTCTTGTGATCACAGTA 58.389 34.615 26.48 16.70 42.94 2.74
2244 2643 6.466812 TGTAATCATGTCTTGTGATCACAGT 58.533 36.000 26.48 10.49 42.94 3.55
2245 2644 6.815142 TCTGTAATCATGTCTTGTGATCACAG 59.185 38.462 26.48 20.12 46.63 3.66
2246 2645 6.700352 TCTGTAATCATGTCTTGTGATCACA 58.300 36.000 24.56 24.56 33.05 3.58
2247 2646 7.601073 TTCTGTAATCATGTCTTGTGATCAC 57.399 36.000 19.27 19.27 35.35 3.06
2248 2647 8.620116 TTTTCTGTAATCATGTCTTGTGATCA 57.380 30.769 0.00 0.00 35.35 2.92
2249 2648 9.713740 GATTTTCTGTAATCATGTCTTGTGATC 57.286 33.333 0.00 0.00 35.35 2.92
2250 2649 9.458727 AGATTTTCTGTAATCATGTCTTGTGAT 57.541 29.630 0.00 0.00 37.06 3.06
2251 2650 8.853077 AGATTTTCTGTAATCATGTCTTGTGA 57.147 30.769 0.00 0.00 37.06 3.58
2252 2651 9.903682 AAAGATTTTCTGTAATCATGTCTTGTG 57.096 29.630 0.00 0.00 37.06 3.33
2266 2665 9.985730 TCAATGCTTTGATTAAAGATTTTCTGT 57.014 25.926 13.77 0.00 44.87 3.41
2271 2670 9.985730 TCACTTCAATGCTTTGATTAAAGATTT 57.014 25.926 15.04 3.60 44.87 2.17
2272 2671 9.985730 TTCACTTCAATGCTTTGATTAAAGATT 57.014 25.926 15.04 7.68 44.87 2.40
2273 2672 9.985730 TTTCACTTCAATGCTTTGATTAAAGAT 57.014 25.926 15.04 2.42 44.87 2.40
2274 2673 9.467258 CTTTCACTTCAATGCTTTGATTAAAGA 57.533 29.630 15.04 7.38 44.87 2.52
2275 2674 9.252962 ACTTTCACTTCAATGCTTTGATTAAAG 57.747 29.630 15.04 19.35 44.86 1.85
2276 2675 9.033481 CACTTTCACTTCAATGCTTTGATTAAA 57.967 29.630 15.04 11.59 41.38 1.52
2277 2676 8.196771 ACACTTTCACTTCAATGCTTTGATTAA 58.803 29.630 15.04 5.72 41.38 1.40
2278 2677 7.648908 CACACTTTCACTTCAATGCTTTGATTA 59.351 33.333 15.04 1.73 41.38 1.75
2279 2678 6.477688 CACACTTTCACTTCAATGCTTTGATT 59.522 34.615 15.04 3.92 41.38 2.57
2280 2679 5.981315 CACACTTTCACTTCAATGCTTTGAT 59.019 36.000 15.04 0.00 41.38 2.57
2281 2680 5.342433 CACACTTTCACTTCAATGCTTTGA 58.658 37.500 10.76 10.76 40.09 2.69
2282 2681 4.026310 GCACACTTTCACTTCAATGCTTTG 60.026 41.667 5.99 5.99 0.00 2.77
2283 2682 4.114794 GCACACTTTCACTTCAATGCTTT 58.885 39.130 0.00 0.00 0.00 3.51
2284 2683 3.130869 TGCACACTTTCACTTCAATGCTT 59.869 39.130 0.00 0.00 33.03 3.91
2285 2684 2.689471 TGCACACTTTCACTTCAATGCT 59.311 40.909 0.00 0.00 33.03 3.79
2286 2685 3.082698 TGCACACTTTCACTTCAATGC 57.917 42.857 0.00 0.00 0.00 3.56
2287 2686 6.245115 TCTATGCACACTTTCACTTCAATG 57.755 37.500 0.00 0.00 0.00 2.82
2288 2687 6.072286 CCTTCTATGCACACTTTCACTTCAAT 60.072 38.462 0.00 0.00 0.00 2.57
2289 2688 5.239306 CCTTCTATGCACACTTTCACTTCAA 59.761 40.000 0.00 0.00 0.00 2.69
2290 2689 4.756642 CCTTCTATGCACACTTTCACTTCA 59.243 41.667 0.00 0.00 0.00 3.02
2291 2690 4.997395 TCCTTCTATGCACACTTTCACTTC 59.003 41.667 0.00 0.00 0.00 3.01
2292 2691 4.973168 TCCTTCTATGCACACTTTCACTT 58.027 39.130 0.00 0.00 0.00 3.16
2293 2692 4.284490 TCTCCTTCTATGCACACTTTCACT 59.716 41.667 0.00 0.00 0.00 3.41
2294 2693 4.569943 TCTCCTTCTATGCACACTTTCAC 58.430 43.478 0.00 0.00 0.00 3.18
2295 2694 4.323028 CCTCTCCTTCTATGCACACTTTCA 60.323 45.833 0.00 0.00 0.00 2.69
2296 2695 4.187694 CCTCTCCTTCTATGCACACTTTC 58.812 47.826 0.00 0.00 0.00 2.62
2297 2696 3.584848 ACCTCTCCTTCTATGCACACTTT 59.415 43.478 0.00 0.00 0.00 2.66
2298 2697 3.177228 ACCTCTCCTTCTATGCACACTT 58.823 45.455 0.00 0.00 0.00 3.16
2299 2698 2.826488 ACCTCTCCTTCTATGCACACT 58.174 47.619 0.00 0.00 0.00 3.55
2300 2699 3.265791 CAACCTCTCCTTCTATGCACAC 58.734 50.000 0.00 0.00 0.00 3.82
2301 2700 2.906389 ACAACCTCTCCTTCTATGCACA 59.094 45.455 0.00 0.00 0.00 4.57
2302 2701 3.618690 ACAACCTCTCCTTCTATGCAC 57.381 47.619 0.00 0.00 0.00 4.57
2303 2702 4.287067 AGAAACAACCTCTCCTTCTATGCA 59.713 41.667 0.00 0.00 0.00 3.96
2304 2703 4.837972 AGAAACAACCTCTCCTTCTATGC 58.162 43.478 0.00 0.00 0.00 3.14
2305 2704 8.848474 TTAAAGAAACAACCTCTCCTTCTATG 57.152 34.615 0.00 0.00 0.00 2.23
2335 2734 9.877178 CTATTCTACTGTTATTTCCAGAACACT 57.123 33.333 0.00 0.00 32.31 3.55
2336 2735 8.604890 GCTATTCTACTGTTATTTCCAGAACAC 58.395 37.037 0.00 0.00 32.31 3.32
2337 2736 8.318412 TGCTATTCTACTGTTATTTCCAGAACA 58.682 33.333 0.00 0.00 34.49 3.18
2338 2737 8.718102 TGCTATTCTACTGTTATTTCCAGAAC 57.282 34.615 0.00 0.00 34.04 3.01
2339 2738 9.905713 ATTGCTATTCTACTGTTATTTCCAGAA 57.094 29.630 0.00 0.00 34.04 3.02
2340 2739 9.547753 GATTGCTATTCTACTGTTATTTCCAGA 57.452 33.333 0.00 0.00 34.04 3.86
2341 2740 8.778358 GGATTGCTATTCTACTGTTATTTCCAG 58.222 37.037 0.00 0.00 36.01 3.86
2342 2741 8.494433 AGGATTGCTATTCTACTGTTATTTCCA 58.506 33.333 0.00 0.00 0.00 3.53
2343 2742 8.910351 AGGATTGCTATTCTACTGTTATTTCC 57.090 34.615 0.00 0.00 0.00 3.13
2379 2778 8.887717 GTCAAGAGCAGTTTATCATCACTTATT 58.112 33.333 0.00 0.00 0.00 1.40
2380 2779 7.497249 GGTCAAGAGCAGTTTATCATCACTTAT 59.503 37.037 0.00 0.00 0.00 1.73
2381 2780 6.818644 GGTCAAGAGCAGTTTATCATCACTTA 59.181 38.462 0.00 0.00 0.00 2.24
2382 2781 5.645497 GGTCAAGAGCAGTTTATCATCACTT 59.355 40.000 0.00 0.00 0.00 3.16
2383 2782 5.181748 GGTCAAGAGCAGTTTATCATCACT 58.818 41.667 0.00 0.00 0.00 3.41
2384 2783 4.937620 TGGTCAAGAGCAGTTTATCATCAC 59.062 41.667 0.00 0.00 34.41 3.06
2385 2784 4.937620 GTGGTCAAGAGCAGTTTATCATCA 59.062 41.667 1.67 0.00 39.74 3.07
2386 2785 4.937620 TGTGGTCAAGAGCAGTTTATCATC 59.062 41.667 1.67 0.00 39.74 2.92
2387 2786 4.910195 TGTGGTCAAGAGCAGTTTATCAT 58.090 39.130 1.67 0.00 39.74 2.45
2388 2787 4.040339 TCTGTGGTCAAGAGCAGTTTATCA 59.960 41.667 1.67 0.00 39.74 2.15
2389 2788 4.569943 TCTGTGGTCAAGAGCAGTTTATC 58.430 43.478 1.67 0.00 39.74 1.75
2390 2789 4.284490 TCTCTGTGGTCAAGAGCAGTTTAT 59.716 41.667 1.67 0.00 39.74 1.40
2391 2790 3.641436 TCTCTGTGGTCAAGAGCAGTTTA 59.359 43.478 1.67 0.00 39.74 2.01
2392 2791 2.435805 TCTCTGTGGTCAAGAGCAGTTT 59.564 45.455 1.67 0.00 39.74 2.66
2393 2792 2.042464 TCTCTGTGGTCAAGAGCAGTT 58.958 47.619 1.67 0.00 39.74 3.16
2394 2793 1.709578 TCTCTGTGGTCAAGAGCAGT 58.290 50.000 1.67 0.00 39.74 4.40
2395 2794 4.180057 GTTATCTCTGTGGTCAAGAGCAG 58.820 47.826 1.67 0.00 39.74 4.24
2396 2795 3.367395 CGTTATCTCTGTGGTCAAGAGCA 60.367 47.826 0.00 0.00 36.34 4.26
2397 2796 3.119459 TCGTTATCTCTGTGGTCAAGAGC 60.119 47.826 0.00 0.00 0.00 4.09
2398 2797 4.703645 TCGTTATCTCTGTGGTCAAGAG 57.296 45.455 0.00 0.00 0.00 2.85
2399 2798 5.462530 TTTCGTTATCTCTGTGGTCAAGA 57.537 39.130 0.00 0.00 0.00 3.02
2400 2799 6.102663 AGATTTCGTTATCTCTGTGGTCAAG 58.897 40.000 0.00 0.00 28.74 3.02
2401 2800 6.037786 AGATTTCGTTATCTCTGTGGTCAA 57.962 37.500 0.00 0.00 28.74 3.18
2402 2801 5.661056 AGATTTCGTTATCTCTGTGGTCA 57.339 39.130 0.00 0.00 28.74 4.02
2403 2802 7.760340 ACTTTAGATTTCGTTATCTCTGTGGTC 59.240 37.037 5.52 0.00 36.34 4.02
2404 2803 7.612677 ACTTTAGATTTCGTTATCTCTGTGGT 58.387 34.615 5.52 0.00 36.34 4.16
2405 2804 8.480643 AACTTTAGATTTCGTTATCTCTGTGG 57.519 34.615 5.52 0.00 36.34 4.17
2415 2814 9.431887 TGCAGTCTATAAACTTTAGATTTCGTT 57.568 29.630 0.00 0.00 0.00 3.85
2416 2815 8.870879 GTGCAGTCTATAAACTTTAGATTTCGT 58.129 33.333 0.00 0.00 0.00 3.85
2417 2816 8.328864 GGTGCAGTCTATAAACTTTAGATTTCG 58.671 37.037 0.00 0.00 0.00 3.46
2418 2817 9.162764 TGGTGCAGTCTATAAACTTTAGATTTC 57.837 33.333 0.00 0.00 0.00 2.17
2419 2818 9.686683 ATGGTGCAGTCTATAAACTTTAGATTT 57.313 29.630 0.00 0.00 0.00 2.17
2420 2819 9.686683 AATGGTGCAGTCTATAAACTTTAGATT 57.313 29.630 0.00 0.00 0.00 2.40
2421 2820 9.331282 GAATGGTGCAGTCTATAAACTTTAGAT 57.669 33.333 0.00 0.00 0.00 1.98
2422 2821 8.318412 TGAATGGTGCAGTCTATAAACTTTAGA 58.682 33.333 0.00 0.00 29.32 2.10
2423 2822 8.391106 GTGAATGGTGCAGTCTATAAACTTTAG 58.609 37.037 0.00 0.00 29.32 1.85
2424 2823 8.100791 AGTGAATGGTGCAGTCTATAAACTTTA 58.899 33.333 0.00 0.00 29.32 1.85
2425 2824 6.942576 AGTGAATGGTGCAGTCTATAAACTTT 59.057 34.615 0.00 0.00 29.32 2.66
2426 2825 6.476378 AGTGAATGGTGCAGTCTATAAACTT 58.524 36.000 0.00 0.00 29.32 2.66
2427 2826 6.054860 AGTGAATGGTGCAGTCTATAAACT 57.945 37.500 0.00 0.00 29.32 2.66
2428 2827 7.042335 AGTAGTGAATGGTGCAGTCTATAAAC 58.958 38.462 0.00 0.00 29.32 2.01
2429 2828 7.182817 AGTAGTGAATGGTGCAGTCTATAAA 57.817 36.000 0.00 0.00 29.32 1.40
2430 2829 6.791867 AGTAGTGAATGGTGCAGTCTATAA 57.208 37.500 0.00 0.00 29.32 0.98
2431 2830 6.791867 AAGTAGTGAATGGTGCAGTCTATA 57.208 37.500 0.00 0.00 29.32 1.31
2432 2831 5.683876 AAGTAGTGAATGGTGCAGTCTAT 57.316 39.130 0.00 0.00 29.32 1.98
2433 2832 5.483685 AAAGTAGTGAATGGTGCAGTCTA 57.516 39.130 0.00 0.00 29.32 2.59
2434 2833 4.357918 AAAGTAGTGAATGGTGCAGTCT 57.642 40.909 0.00 0.00 29.32 3.24
2435 2834 4.515191 TGAAAAGTAGTGAATGGTGCAGTC 59.485 41.667 0.00 0.00 0.00 3.51
2436 2835 4.275936 GTGAAAAGTAGTGAATGGTGCAGT 59.724 41.667 0.00 0.00 0.00 4.40
2437 2836 4.320494 GGTGAAAAGTAGTGAATGGTGCAG 60.320 45.833 0.00 0.00 0.00 4.41
2438 2837 3.568007 GGTGAAAAGTAGTGAATGGTGCA 59.432 43.478 0.00 0.00 0.00 4.57
2439 2838 3.568007 TGGTGAAAAGTAGTGAATGGTGC 59.432 43.478 0.00 0.00 0.00 5.01
2440 2839 5.964958 ATGGTGAAAAGTAGTGAATGGTG 57.035 39.130 0.00 0.00 0.00 4.17
2441 2840 7.016153 TCTATGGTGAAAAGTAGTGAATGGT 57.984 36.000 0.00 0.00 0.00 3.55
2442 2841 6.540189 CCTCTATGGTGAAAAGTAGTGAATGG 59.460 42.308 0.00 0.00 0.00 3.16
2443 2842 6.037610 GCCTCTATGGTGAAAAGTAGTGAATG 59.962 42.308 0.00 0.00 38.35 2.67
2444 2843 6.116126 GCCTCTATGGTGAAAAGTAGTGAAT 58.884 40.000 0.00 0.00 38.35 2.57
2445 2844 5.012664 TGCCTCTATGGTGAAAAGTAGTGAA 59.987 40.000 0.00 0.00 38.35 3.18
2446 2845 4.530553 TGCCTCTATGGTGAAAAGTAGTGA 59.469 41.667 0.00 0.00 38.35 3.41
2447 2846 4.832248 TGCCTCTATGGTGAAAAGTAGTG 58.168 43.478 0.00 0.00 38.35 2.74
2448 2847 4.624125 GCTGCCTCTATGGTGAAAAGTAGT 60.624 45.833 0.00 0.00 38.35 2.73
2449 2848 3.873952 GCTGCCTCTATGGTGAAAAGTAG 59.126 47.826 0.00 0.00 38.35 2.57
2450 2849 3.263170 TGCTGCCTCTATGGTGAAAAGTA 59.737 43.478 0.00 0.00 38.35 2.24
2451 2850 2.040278 TGCTGCCTCTATGGTGAAAAGT 59.960 45.455 0.00 0.00 38.35 2.66
2452 2851 2.715046 TGCTGCCTCTATGGTGAAAAG 58.285 47.619 0.00 0.00 38.35 2.27
2453 2852 2.877097 TGCTGCCTCTATGGTGAAAA 57.123 45.000 0.00 0.00 38.35 2.29
2454 2853 2.877097 TTGCTGCCTCTATGGTGAAA 57.123 45.000 0.00 0.00 38.35 2.69
2455 2854 2.646930 CATTGCTGCCTCTATGGTGAA 58.353 47.619 0.00 0.00 38.35 3.18
2456 2855 1.134007 CCATTGCTGCCTCTATGGTGA 60.134 52.381 0.00 0.00 35.54 4.02
2457 2856 1.134007 TCCATTGCTGCCTCTATGGTG 60.134 52.381 15.22 0.00 39.37 4.17
2458 2857 1.216064 TCCATTGCTGCCTCTATGGT 58.784 50.000 15.22 0.00 39.37 3.55
2459 2858 2.158711 TCTTCCATTGCTGCCTCTATGG 60.159 50.000 11.59 11.59 39.59 2.74
2460 2859 2.877168 GTCTTCCATTGCTGCCTCTATG 59.123 50.000 0.00 0.00 0.00 2.23
2461 2860 3.205784 GTCTTCCATTGCTGCCTCTAT 57.794 47.619 0.00 0.00 0.00 1.98
2462 2861 2.698855 GTCTTCCATTGCTGCCTCTA 57.301 50.000 0.00 0.00 0.00 2.43
2463 2862 3.566130 GTCTTCCATTGCTGCCTCT 57.434 52.632 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.