Multiple sequence alignment - TraesCS7A01G278400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G278400 chr7A 100.000 2984 0 0 1 2984 293303239 293306222 0.000000e+00 5511.0
1 TraesCS7A01G278400 chr7A 86.434 258 14 9 2254 2493 202996978 202997232 2.280000e-66 263.0
2 TraesCS7A01G278400 chr7A 89.908 109 9 2 355 462 293303700 293303593 4.010000e-29 139.0
3 TraesCS7A01G278400 chr7A 92.784 97 5 2 2889 2984 713636028 713636123 4.010000e-29 139.0
4 TraesCS7A01G278400 chr7D 96.372 1654 41 4 608 2255 267386229 267384589 0.000000e+00 2704.0
5 TraesCS7A01G278400 chr7D 90.155 386 38 0 2516 2901 267384566 267384181 1.230000e-138 503.0
6 TraesCS7A01G278400 chr7D 86.969 353 25 9 14 355 267386628 267386286 7.810000e-101 377.0
7 TraesCS7A01G278400 chr7D 89.720 107 8 2 2878 2984 147925083 147924980 1.870000e-27 134.0
8 TraesCS7A01G278400 chr7B 96.276 1638 40 7 608 2241 247315123 247313503 0.000000e+00 2667.0
9 TraesCS7A01G278400 chr7B 86.701 391 37 3 2511 2901 247313506 247313131 1.280000e-113 420.0
10 TraesCS7A01G278400 chr7B 87.772 368 29 6 1 355 247315544 247315180 1.650000e-112 416.0
11 TraesCS7A01G278400 chr7B 85.551 263 18 8 2254 2499 514515499 514515240 1.060000e-64 257.0
12 TraesCS7A01G278400 chr3D 85.441 261 18 11 2250 2493 226986500 226986757 1.370000e-63 254.0
13 TraesCS7A01G278400 chr3D 83.529 255 21 11 2253 2489 31091573 31091824 5.010000e-53 219.0
14 TraesCS7A01G278400 chr3D 96.471 85 3 0 2900 2984 468941327 468941243 1.120000e-29 141.0
15 TraesCS7A01G278400 chr2A 84.030 263 24 10 2253 2499 27092677 27092417 1.380000e-58 237.0
16 TraesCS7A01G278400 chr2A 90.476 63 5 1 551 612 517026856 517026918 6.860000e-12 82.4
17 TraesCS7A01G278400 chr2A 82.955 88 8 4 523 609 89123390 89123309 4.130000e-09 73.1
18 TraesCS7A01G278400 chr6B 82.510 263 28 12 2252 2499 469709376 469709635 6.480000e-52 215.0
19 TraesCS7A01G278400 chr6B 92.233 103 5 3 360 461 260119005 260119105 3.100000e-30 143.0
20 TraesCS7A01G278400 chr6B 92.632 95 4 3 362 455 260119099 260119007 1.870000e-27 134.0
21 TraesCS7A01G278400 chr6B 89.062 64 6 1 554 616 706167450 706167387 8.870000e-11 78.7
22 TraesCS7A01G278400 chr5A 82.197 264 27 11 2253 2499 690549499 690549239 3.010000e-50 209.0
23 TraesCS7A01G278400 chr5A 88.235 68 6 2 544 610 31401956 31402022 2.470000e-11 80.5
24 TraesCS7A01G278400 chr5A 97.222 36 1 0 525 560 359740248 359740213 8.930000e-06 62.1
25 TraesCS7A01G278400 chr5A 100.000 31 0 0 523 553 478013745 478013775 1.160000e-04 58.4
26 TraesCS7A01G278400 chr5A 94.444 36 2 0 525 560 688509296 688509331 4.160000e-04 56.5
27 TraesCS7A01G278400 chr2D 82.745 255 21 13 2252 2487 423652046 423652296 3.900000e-49 206.0
28 TraesCS7A01G278400 chr2D 91.346 104 7 2 2882 2984 506231783 506231681 1.120000e-29 141.0
29 TraesCS7A01G278400 chr5B 81.343 268 28 15 2254 2502 276947044 276947308 6.520000e-47 198.0
30 TraesCS7A01G278400 chr5B 92.784 97 5 2 2888 2984 114925721 114925627 4.010000e-29 139.0
31 TraesCS7A01G278400 chr5B 98.276 58 1 0 404 461 582713588 582713531 5.260000e-18 102.0
32 TraesCS7A01G278400 chrUn 97.115 104 3 0 357 460 471088286 471088183 3.060000e-40 176.0
33 TraesCS7A01G278400 chrUn 93.684 95 4 2 362 455 471088188 471088281 1.120000e-29 141.0
34 TraesCS7A01G278400 chrUn 100.000 28 0 0 526 553 75251847 75251874 5.000000e-03 52.8
35 TraesCS7A01G278400 chr3B 80.228 263 27 17 2251 2492 237499178 237498920 1.100000e-39 174.0
36 TraesCS7A01G278400 chr3B 90.476 63 5 1 551 612 53573954 53574016 6.860000e-12 82.4
37 TraesCS7A01G278400 chr1B 94.595 111 2 2 355 461 397995981 397995871 5.120000e-38 169.0
38 TraesCS7A01G278400 chr1B 85.276 163 22 2 2494 2654 554429058 554429220 1.840000e-37 167.0
39 TraesCS7A01G278400 chr1B 89.189 111 8 2 356 462 397995871 397995981 5.190000e-28 135.0
40 TraesCS7A01G278400 chr1B 94.828 58 0 2 2253 2309 223145019 223144964 1.470000e-13 87.9
41 TraesCS7A01G278400 chr1B 91.667 60 4 1 554 612 369256057 369255998 6.860000e-12 82.4
42 TraesCS7A01G278400 chr6A 95.652 92 1 3 2895 2984 475019185 475019095 8.620000e-31 145.0
43 TraesCS7A01G278400 chr5D 92.929 99 5 2 2888 2984 10001981 10002079 3.100000e-30 143.0
44 TraesCS7A01G278400 chr6D 90.476 105 8 2 2881 2984 23206295 23206398 1.440000e-28 137.0
45 TraesCS7A01G278400 chr3A 87.826 115 8 5 2872 2984 641435835 641435945 2.410000e-26 130.0
46 TraesCS7A01G278400 chr3A 84.091 132 2 2 348 461 372455714 372455584 3.140000e-20 110.0
47 TraesCS7A01G278400 chr1D 82.407 108 17 2 356 461 3817817 3817710 3.170000e-15 93.5
48 TraesCS7A01G278400 chr4A 89.855 69 5 2 551 617 31795064 31795132 1.470000e-13 87.9
49 TraesCS7A01G278400 chr4A 79.592 98 5 11 524 606 45751114 45751211 4.160000e-04 56.5
50 TraesCS7A01G278400 chr1A 77.551 147 28 5 2512 2656 130349216 130349073 1.910000e-12 84.2
51 TraesCS7A01G278400 chr1A 91.667 60 4 1 554 612 7331844 7331785 6.860000e-12 82.4
52 TraesCS7A01G278400 chr1A 100.000 30 0 0 524 553 376786746 376786717 4.160000e-04 56.5
53 TraesCS7A01G278400 chr4B 84.270 89 5 7 2253 2338 7805548 7805630 8.870000e-11 78.7
54 TraesCS7A01G278400 chr4B 88.235 68 5 3 554 620 371600032 371599967 8.870000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G278400 chr7A 293303239 293306222 2983 False 5511.000000 5511 100.000000 1 2984 1 chr7A.!!$F2 2983
1 TraesCS7A01G278400 chr7D 267384181 267386628 2447 True 1194.666667 2704 91.165333 14 2901 3 chr7D.!!$R2 2887
2 TraesCS7A01G278400 chr7B 247313131 247315544 2413 True 1167.666667 2667 90.249667 1 2901 3 chr7B.!!$R2 2900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 382 0.034896 TTGTTTGGACGAGGCTCCTC 59.965 55.0 9.32 6.95 39.55 3.71 F
381 395 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.0 13.48 13.48 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1295 2.805353 CGGTCGAACTCTGCCACG 60.805 66.667 0.0 0.0 0.00 4.94 R
2062 2076 2.866762 GCTAATGGCTACACAGTACAGC 59.133 50.000 0.0 0.0 38.06 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 7.765360 TGTCTTTTCTTCTTTGCAATCATGTTT 59.235 29.630 0.00 0.00 0.00 2.83
67 69 2.647299 TCATATTGGTGGTCAGGTTGGT 59.353 45.455 0.00 0.00 0.00 3.67
71 73 2.668550 GTGGTCAGGTTGGTCGGC 60.669 66.667 0.00 0.00 0.00 5.54
104 106 1.614903 ACGTGGGTTGAGTTGTATCGA 59.385 47.619 0.00 0.00 0.00 3.59
110 112 6.540205 GTGGGTTGAGTTGTATCGATTTTAC 58.460 40.000 1.71 0.00 0.00 2.01
129 139 0.949105 CCCCGGTTTTCGTCAGACAG 60.949 60.000 0.00 0.00 37.11 3.51
134 144 2.864343 CGGTTTTCGTCAGACAGTTCTT 59.136 45.455 0.41 0.00 0.00 2.52
135 145 3.302480 CGGTTTTCGTCAGACAGTTCTTG 60.302 47.826 0.41 0.00 0.00 3.02
180 193 8.794335 AAATGGTACTTTTGCCTTGTTTTAAA 57.206 26.923 0.00 0.00 0.00 1.52
207 221 0.904865 ATGCTCCGAGGACTTGACCA 60.905 55.000 0.00 0.00 0.00 4.02
283 297 3.183574 TGTCACGACGCTGAAATTTGTAG 59.816 43.478 0.00 0.00 0.00 2.74
284 298 3.183775 GTCACGACGCTGAAATTTGTAGT 59.816 43.478 0.00 0.00 0.00 2.73
326 340 5.414144 AGCTCTTCTGATTTGCCTTTTACTC 59.586 40.000 0.00 0.00 0.00 2.59
346 360 2.629137 TCTAAACCGTGTGTGAAGCCTA 59.371 45.455 0.00 0.00 0.00 3.93
347 361 1.589803 AAACCGTGTGTGAAGCCTAC 58.410 50.000 0.00 0.00 0.00 3.18
348 362 0.756903 AACCGTGTGTGAAGCCTACT 59.243 50.000 0.00 0.00 0.00 2.57
349 363 0.756903 ACCGTGTGTGAAGCCTACTT 59.243 50.000 0.00 0.00 39.43 2.24
350 364 1.140252 ACCGTGTGTGAAGCCTACTTT 59.860 47.619 0.00 0.00 35.82 2.66
351 365 1.531149 CCGTGTGTGAAGCCTACTTTG 59.469 52.381 0.00 0.00 35.82 2.77
352 366 2.210116 CGTGTGTGAAGCCTACTTTGT 58.790 47.619 0.00 0.00 35.82 2.83
353 367 2.612212 CGTGTGTGAAGCCTACTTTGTT 59.388 45.455 0.00 0.00 35.82 2.83
354 368 3.064820 CGTGTGTGAAGCCTACTTTGTTT 59.935 43.478 0.00 0.00 35.82 2.83
355 369 4.351192 GTGTGTGAAGCCTACTTTGTTTG 58.649 43.478 0.00 0.00 35.82 2.93
356 370 3.380004 TGTGTGAAGCCTACTTTGTTTGG 59.620 43.478 0.00 0.00 35.82 3.28
357 371 3.630312 GTGTGAAGCCTACTTTGTTTGGA 59.370 43.478 0.00 0.00 35.82 3.53
358 372 3.630312 TGTGAAGCCTACTTTGTTTGGAC 59.370 43.478 0.00 0.00 35.82 4.02
359 373 2.875933 TGAAGCCTACTTTGTTTGGACG 59.124 45.455 0.00 0.00 35.82 4.79
360 374 2.922740 AGCCTACTTTGTTTGGACGA 57.077 45.000 0.00 0.00 0.00 4.20
361 375 2.767505 AGCCTACTTTGTTTGGACGAG 58.232 47.619 0.00 0.00 0.00 4.18
362 376 1.804748 GCCTACTTTGTTTGGACGAGG 59.195 52.381 0.00 0.00 0.00 4.63
363 377 1.804748 CCTACTTTGTTTGGACGAGGC 59.195 52.381 0.00 0.00 0.00 4.70
364 378 2.550208 CCTACTTTGTTTGGACGAGGCT 60.550 50.000 0.00 0.00 0.00 4.58
365 379 1.594331 ACTTTGTTTGGACGAGGCTC 58.406 50.000 3.87 3.87 0.00 4.70
366 380 0.875059 CTTTGTTTGGACGAGGCTCC 59.125 55.000 9.32 0.00 0.00 4.70
367 381 0.472471 TTTGTTTGGACGAGGCTCCT 59.528 50.000 9.32 0.00 0.00 3.69
368 382 0.034896 TTGTTTGGACGAGGCTCCTC 59.965 55.000 9.32 6.95 39.55 3.71
369 383 0.832135 TGTTTGGACGAGGCTCCTCT 60.832 55.000 9.32 1.64 40.69 3.69
370 384 0.390472 GTTTGGACGAGGCTCCTCTG 60.390 60.000 9.32 9.55 40.69 3.35
371 385 0.541998 TTTGGACGAGGCTCCTCTGA 60.542 55.000 9.32 0.00 40.69 3.27
372 386 1.251527 TTGGACGAGGCTCCTCTGAC 61.252 60.000 9.32 7.69 40.69 3.51
373 387 2.766400 GGACGAGGCTCCTCTGACG 61.766 68.421 9.32 4.08 40.69 4.35
374 388 2.034376 ACGAGGCTCCTCTGACGT 59.966 61.111 9.32 4.69 40.69 4.34
375 389 0.743701 GACGAGGCTCCTCTGACGTA 60.744 60.000 9.32 0.00 40.69 3.57
376 390 1.025647 ACGAGGCTCCTCTGACGTAC 61.026 60.000 9.32 0.00 40.69 3.67
377 391 0.745128 CGAGGCTCCTCTGACGTACT 60.745 60.000 9.32 0.00 40.69 2.73
378 392 0.736053 GAGGCTCCTCTGACGTACTG 59.264 60.000 2.15 0.00 39.80 2.74
379 393 1.139947 GGCTCCTCTGACGTACTGC 59.860 63.158 0.00 0.00 0.00 4.40
380 394 1.595993 GGCTCCTCTGACGTACTGCA 61.596 60.000 0.00 0.00 0.00 4.41
381 395 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.000 13.48 13.48 0.00 4.41
382 396 0.453793 CTCCTCTGACGTACTGCAGG 59.546 60.000 19.93 2.38 33.05 4.85
383 397 0.965866 TCCTCTGACGTACTGCAGGG 60.966 60.000 19.93 9.39 33.05 4.45
384 398 1.153745 CTCTGACGTACTGCAGGGC 60.154 63.158 19.93 9.18 33.05 5.19
385 399 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
386 400 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
401 415 3.357079 CGCAGTTGGGCCACTGAC 61.357 66.667 28.71 17.09 46.29 3.51
402 416 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
403 417 1.604593 GCAGTTGGGCCACTGACAT 60.605 57.895 28.71 6.63 46.29 3.06
404 418 1.181098 GCAGTTGGGCCACTGACATT 61.181 55.000 28.71 2.71 46.29 2.71
405 419 0.599558 CAGTTGGGCCACTGACATTG 59.400 55.000 23.45 6.75 46.29 2.82
406 420 0.540365 AGTTGGGCCACTGACATTGG 60.540 55.000 5.23 7.46 37.17 3.16
411 425 3.685435 CCACTGACATTGGCCCAC 58.315 61.111 0.00 0.00 0.00 4.61
412 426 1.978617 CCACTGACATTGGCCCACC 60.979 63.158 0.00 0.00 0.00 4.61
413 427 1.075482 CACTGACATTGGCCCACCT 59.925 57.895 0.00 0.00 36.63 4.00
414 428 1.075482 ACTGACATTGGCCCACCTG 59.925 57.895 0.00 0.00 36.63 4.00
415 429 1.075482 CTGACATTGGCCCACCTGT 59.925 57.895 0.00 0.00 36.63 4.00
416 430 0.962356 CTGACATTGGCCCACCTGTC 60.962 60.000 15.55 15.55 40.12 3.51
417 431 1.074775 GACATTGGCCCACCTGTCA 59.925 57.895 16.91 0.00 39.70 3.58
418 432 0.962356 GACATTGGCCCACCTGTCAG 60.962 60.000 16.91 0.00 39.70 3.51
419 433 1.075482 CATTGGCCCACCTGTCAGT 59.925 57.895 0.00 0.00 36.63 3.41
420 434 1.075482 ATTGGCCCACCTGTCAGTG 59.925 57.895 0.00 0.00 36.63 3.66
426 440 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
427 441 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
428 442 2.078665 ACCTGTCAGTGGCCCAACT 61.079 57.895 0.00 0.00 0.00 3.16
430 444 2.203337 TGTCAGTGGCCCAACTGC 60.203 61.111 16.60 12.53 45.93 4.40
431 445 3.357079 GTCAGTGGCCCAACTGCG 61.357 66.667 16.60 0.00 45.93 5.18
446 460 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
447 461 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
450 464 2.579201 CCTGCAGTACGTCAGGGG 59.421 66.667 21.58 5.35 44.64 4.79
451 465 1.982395 CCTGCAGTACGTCAGGGGA 60.982 63.158 21.58 0.00 44.64 4.81
452 466 1.513158 CTGCAGTACGTCAGGGGAG 59.487 63.158 5.25 0.00 0.00 4.30
453 467 2.184579 GCAGTACGTCAGGGGAGC 59.815 66.667 0.00 0.00 0.00 4.70
454 468 2.893398 CAGTACGTCAGGGGAGCC 59.107 66.667 0.00 0.00 0.00 4.70
455 469 2.754658 AGTACGTCAGGGGAGCCG 60.755 66.667 0.00 0.00 0.00 5.52
456 470 2.753043 GTACGTCAGGGGAGCCGA 60.753 66.667 0.00 0.00 0.00 5.54
457 471 2.439701 TACGTCAGGGGAGCCGAG 60.440 66.667 0.00 0.00 0.00 4.63
458 472 3.278072 TACGTCAGGGGAGCCGAGT 62.278 63.158 0.00 0.00 0.00 4.18
459 473 3.827898 CGTCAGGGGAGCCGAGTC 61.828 72.222 0.00 0.00 0.00 3.36
460 474 3.462678 GTCAGGGGAGCCGAGTCC 61.463 72.222 0.00 0.00 35.64 3.85
484 498 4.689345 ACTTTGTTTACTCCACGAGCATAC 59.311 41.667 0.00 0.00 32.04 2.39
511 525 6.918022 GGAGGCGGAAACTTAAATGAAATATG 59.082 38.462 0.00 0.00 0.00 1.78
529 543 2.848678 TGGATGAGCCACCTACTACT 57.151 50.000 0.00 0.00 43.33 2.57
530 544 2.667470 TGGATGAGCCACCTACTACTC 58.333 52.381 0.00 0.00 43.33 2.59
532 546 2.425102 GGATGAGCCACCTACTACTCCT 60.425 54.545 0.00 0.00 36.34 3.69
534 548 2.736347 TGAGCCACCTACTACTCCTTC 58.264 52.381 0.00 0.00 0.00 3.46
535 549 2.033372 GAGCCACCTACTACTCCTTCC 58.967 57.143 0.00 0.00 0.00 3.46
536 550 0.745468 GCCACCTACTACTCCTTCCG 59.255 60.000 0.00 0.00 0.00 4.30
537 551 1.959028 GCCACCTACTACTCCTTCCGT 60.959 57.143 0.00 0.00 0.00 4.69
538 552 2.454538 CCACCTACTACTCCTTCCGTT 58.545 52.381 0.00 0.00 0.00 4.44
539 553 2.830321 CCACCTACTACTCCTTCCGTTT 59.170 50.000 0.00 0.00 0.00 3.60
540 554 3.119209 CCACCTACTACTCCTTCCGTTTC 60.119 52.174 0.00 0.00 0.00 2.78
541 555 2.751806 ACCTACTACTCCTTCCGTTTCG 59.248 50.000 0.00 0.00 0.00 3.46
542 556 3.012518 CCTACTACTCCTTCCGTTTCGA 58.987 50.000 0.00 0.00 0.00 3.71
543 557 3.441572 CCTACTACTCCTTCCGTTTCGAA 59.558 47.826 0.00 0.00 0.00 3.71
544 558 4.097589 CCTACTACTCCTTCCGTTTCGAAT 59.902 45.833 0.00 0.00 0.00 3.34
545 559 4.532314 ACTACTCCTTCCGTTTCGAATT 57.468 40.909 0.00 0.00 0.00 2.17
546 560 5.649782 ACTACTCCTTCCGTTTCGAATTA 57.350 39.130 0.00 0.00 0.00 1.40
547 561 5.405797 ACTACTCCTTCCGTTTCGAATTAC 58.594 41.667 0.00 0.00 0.00 1.89
548 562 4.532314 ACTCCTTCCGTTTCGAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
549 563 4.891260 ACTCCTTCCGTTTCGAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
550 564 4.689345 ACTCCTTCCGTTTCGAATTACTTG 59.311 41.667 0.00 0.00 0.00 3.16
551 565 4.634199 TCCTTCCGTTTCGAATTACTTGT 58.366 39.130 0.00 0.00 0.00 3.16
552 566 4.687483 TCCTTCCGTTTCGAATTACTTGTC 59.313 41.667 0.00 0.00 0.00 3.18
553 567 4.142966 CCTTCCGTTTCGAATTACTTGTCC 60.143 45.833 0.00 0.00 0.00 4.02
554 568 4.261578 TCCGTTTCGAATTACTTGTCCT 57.738 40.909 0.00 0.00 0.00 3.85
555 569 5.389859 TCCGTTTCGAATTACTTGTCCTA 57.610 39.130 0.00 0.00 0.00 2.94
556 570 5.404946 TCCGTTTCGAATTACTTGTCCTAG 58.595 41.667 0.00 0.00 0.00 3.02
557 571 5.183713 TCCGTTTCGAATTACTTGTCCTAGA 59.816 40.000 0.00 0.00 0.00 2.43
558 572 6.040878 CCGTTTCGAATTACTTGTCCTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
559 573 6.534079 CCGTTTCGAATTACTTGTCCTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
560 574 7.703621 CCGTTTCGAATTACTTGTCCTAGATTA 59.296 37.037 0.00 0.00 0.00 1.75
561 575 9.245962 CGTTTCGAATTACTTGTCCTAGATTAT 57.754 33.333 0.00 0.00 0.00 1.28
563 577 9.760077 TTTCGAATTACTTGTCCTAGATTATCC 57.240 33.333 0.00 0.00 0.00 2.59
564 578 7.591165 TCGAATTACTTGTCCTAGATTATCCG 58.409 38.462 0.00 0.00 0.00 4.18
565 579 7.230108 TCGAATTACTTGTCCTAGATTATCCGT 59.770 37.037 0.00 0.00 0.00 4.69
566 580 8.509690 CGAATTACTTGTCCTAGATTATCCGTA 58.490 37.037 0.00 0.00 0.00 4.02
569 583 9.756571 ATTACTTGTCCTAGATTATCCGTATCT 57.243 33.333 0.00 0.00 36.39 1.98
572 586 9.584008 ACTTGTCCTAGATTATCCGTATCTAAA 57.416 33.333 0.00 0.00 34.97 1.85
573 587 9.843334 CTTGTCCTAGATTATCCGTATCTAAAC 57.157 37.037 0.00 0.00 34.97 2.01
574 588 8.929260 TGTCCTAGATTATCCGTATCTAAACA 57.071 34.615 0.00 0.00 34.97 2.83
575 589 9.358406 TGTCCTAGATTATCCGTATCTAAACAA 57.642 33.333 0.00 0.00 34.97 2.83
587 601 9.582431 TCCGTATCTAAACAATTCTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
588 602 9.367444 CCGTATCTAAACAATTCTAAGACAAGT 57.633 33.333 0.00 0.00 0.00 3.16
596 610 8.842358 AACAATTCTAAGACAAGTAATTCGGA 57.158 30.769 0.00 0.00 0.00 4.55
597 611 8.842358 ACAATTCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
598 612 8.718734 ACAATTCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
1221 1235 2.347661 CGTCAAGTTCTGCGTCAACTTC 60.348 50.000 4.88 0.00 41.25 3.01
1263 1277 4.016706 CCCAAGGACCGGTCGCTT 62.017 66.667 27.68 25.72 0.00 4.68
1266 1280 1.301401 CAAGGACCGGTCGCTTTCA 60.301 57.895 27.68 0.00 0.00 2.69
1963 1977 2.743538 GCACCGACATGCTGCTCA 60.744 61.111 0.00 0.00 42.62 4.26
2018 2032 1.093159 GCTGCTGCTGCTTCAGTATT 58.907 50.000 22.10 0.00 40.48 1.89
2062 2076 2.104331 CTCGATCCACGGGTTCGG 59.896 66.667 17.63 9.08 42.88 4.30
2101 2121 3.662247 AGCTCGCAACAGTTACTTAGT 57.338 42.857 0.00 0.00 0.00 2.24
2105 2125 4.682860 GCTCGCAACAGTTACTTAGTTGTA 59.317 41.667 14.26 5.52 43.31 2.41
2135 2155 4.115516 CGATTCACCATCTCGAACTGATT 58.884 43.478 0.00 0.00 34.41 2.57
2154 2174 5.953183 TGATTCGACTCAAATTGGAAATGG 58.047 37.500 2.54 0.00 0.00 3.16
2178 2198 5.345741 GTGCGTAGAATTTGCAAATGTCATT 59.654 36.000 24.74 10.00 40.83 2.57
2190 2210 5.821470 TGCAAATGTCATTTGGAAATGTGTT 59.179 32.000 30.31 0.00 45.57 3.32
2247 2267 1.274596 CGGACAATGCTACACGTACC 58.725 55.000 0.00 0.00 0.00 3.34
2252 2272 4.378046 GGACAATGCTACACGTACCAAAAG 60.378 45.833 0.00 0.00 0.00 2.27
2253 2273 4.131596 ACAATGCTACACGTACCAAAAGT 58.868 39.130 0.00 0.00 0.00 2.66
2254 2274 5.299148 ACAATGCTACACGTACCAAAAGTA 58.701 37.500 0.00 0.00 0.00 2.24
2255 2275 5.178067 ACAATGCTACACGTACCAAAAGTAC 59.822 40.000 0.00 0.00 46.74 2.73
2263 2283 3.242549 GTACCAAAAGTACTCCCTCCG 57.757 52.381 0.00 0.00 46.69 4.63
2264 2284 1.725803 ACCAAAAGTACTCCCTCCGT 58.274 50.000 0.00 0.00 0.00 4.69
2265 2285 2.052468 ACCAAAAGTACTCCCTCCGTT 58.948 47.619 0.00 0.00 0.00 4.44
2266 2286 2.440627 ACCAAAAGTACTCCCTCCGTTT 59.559 45.455 0.00 0.00 0.00 3.60
2267 2287 3.117776 ACCAAAAGTACTCCCTCCGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
2268 2288 3.887110 CCAAAAGTACTCCCTCCGTTTTT 59.113 43.478 0.00 0.00 0.00 1.94
2320 2340 5.880341 GTCAAACTTTGTGACTAGCTTTGT 58.120 37.500 0.00 0.00 41.80 2.83
2321 2341 7.011828 GTCAAACTTTGTGACTAGCTTTGTA 57.988 36.000 0.00 0.00 41.80 2.41
2322 2342 7.639945 GTCAAACTTTGTGACTAGCTTTGTAT 58.360 34.615 0.00 0.00 41.80 2.29
2323 2343 7.587757 GTCAAACTTTGTGACTAGCTTTGTATG 59.412 37.037 0.00 0.00 41.80 2.39
2324 2344 7.497579 TCAAACTTTGTGACTAGCTTTGTATGA 59.502 33.333 0.00 0.00 0.00 2.15
2325 2345 7.801716 AACTTTGTGACTAGCTTTGTATGAA 57.198 32.000 0.00 0.00 0.00 2.57
2326 2346 7.801716 ACTTTGTGACTAGCTTTGTATGAAA 57.198 32.000 0.00 0.00 0.00 2.69
2327 2347 8.220755 ACTTTGTGACTAGCTTTGTATGAAAA 57.779 30.769 0.00 0.00 0.00 2.29
2328 2348 8.850156 ACTTTGTGACTAGCTTTGTATGAAAAT 58.150 29.630 0.00 0.00 0.00 1.82
2421 2441 9.612066 AACTTTTGTTTTGTGGATGTTGATATT 57.388 25.926 0.00 0.00 40.17 1.28
2422 2442 9.044150 ACTTTTGTTTTGTGGATGTTGATATTG 57.956 29.630 0.00 0.00 0.00 1.90
2423 2443 8.954950 TTTTGTTTTGTGGATGTTGATATTGT 57.045 26.923 0.00 0.00 0.00 2.71
2424 2444 8.954950 TTTGTTTTGTGGATGTTGATATTGTT 57.045 26.923 0.00 0.00 0.00 2.83
2425 2445 8.954950 TTGTTTTGTGGATGTTGATATTGTTT 57.045 26.923 0.00 0.00 0.00 2.83
2426 2446 8.586570 TGTTTTGTGGATGTTGATATTGTTTC 57.413 30.769 0.00 0.00 0.00 2.78
2427 2447 8.420222 TGTTTTGTGGATGTTGATATTGTTTCT 58.580 29.630 0.00 0.00 0.00 2.52
2428 2448 9.906660 GTTTTGTGGATGTTGATATTGTTTCTA 57.093 29.630 0.00 0.00 0.00 2.10
2466 2486 6.544928 AAAGTTTGACTTTGACCCAAATCT 57.455 33.333 5.34 0.00 45.83 2.40
2467 2487 6.544928 AAGTTTGACTTTGACCCAAATCTT 57.455 33.333 0.00 0.00 34.11 2.40
2468 2488 7.654022 AAGTTTGACTTTGACCCAAATCTTA 57.346 32.000 0.00 0.00 34.11 2.10
2469 2489 7.039313 AGTTTGACTTTGACCCAAATCTTAC 57.961 36.000 0.00 0.00 32.70 2.34
2470 2490 6.605594 AGTTTGACTTTGACCCAAATCTTACA 59.394 34.615 0.00 0.00 32.70 2.41
2471 2491 7.287696 AGTTTGACTTTGACCCAAATCTTACAT 59.712 33.333 0.00 0.00 32.70 2.29
2472 2492 8.573035 GTTTGACTTTGACCCAAATCTTACATA 58.427 33.333 0.00 0.00 32.70 2.29
2473 2493 7.681939 TGACTTTGACCCAAATCTTACATAC 57.318 36.000 0.00 0.00 32.70 2.39
2474 2494 6.370442 TGACTTTGACCCAAATCTTACATACG 59.630 38.462 0.00 0.00 32.70 3.06
2475 2495 6.469410 ACTTTGACCCAAATCTTACATACGA 58.531 36.000 0.00 0.00 32.70 3.43
2476 2496 6.938030 ACTTTGACCCAAATCTTACATACGAA 59.062 34.615 0.00 0.00 32.70 3.85
2477 2497 6.730960 TTGACCCAAATCTTACATACGAAC 57.269 37.500 0.00 0.00 0.00 3.95
2478 2498 5.795972 TGACCCAAATCTTACATACGAACA 58.204 37.500 0.00 0.00 0.00 3.18
2479 2499 6.231951 TGACCCAAATCTTACATACGAACAA 58.768 36.000 0.00 0.00 0.00 2.83
2480 2500 6.711194 TGACCCAAATCTTACATACGAACAAA 59.289 34.615 0.00 0.00 0.00 2.83
2481 2501 7.228906 TGACCCAAATCTTACATACGAACAAAA 59.771 33.333 0.00 0.00 0.00 2.44
2482 2502 7.942990 ACCCAAATCTTACATACGAACAAAAA 58.057 30.769 0.00 0.00 0.00 1.94
2503 2523 6.385649 AAAAGAAACGGAGAAAGTAATGCA 57.614 33.333 0.00 0.00 0.00 3.96
2513 2533 6.035112 CGGAGAAAGTAATGCAAGAGTTCTAC 59.965 42.308 0.00 0.00 0.00 2.59
2514 2534 7.100409 GGAGAAAGTAATGCAAGAGTTCTACT 58.900 38.462 0.00 0.00 0.00 2.57
2545 2571 6.096001 GCTGATGTGAAGAAGATTAATTGGGT 59.904 38.462 0.00 0.00 0.00 4.51
2554 2580 8.986929 AAGAAGATTAATTGGGTCAGGATTAG 57.013 34.615 0.00 0.00 0.00 1.73
2561 2587 0.833287 GGGTCAGGATTAGCAGCTGA 59.167 55.000 20.43 0.00 0.00 4.26
2593 2619 2.093553 CGTTGAAATTCATGGGGCCAAT 60.094 45.455 4.39 0.00 0.00 3.16
2661 2687 7.164990 CGTAGATGTAGCATTATTGATAGAGCG 59.835 40.741 0.00 0.00 29.72 5.03
2696 2722 5.470098 TCCTTTCACTTCTGCTTTGATACAC 59.530 40.000 0.00 0.00 0.00 2.90
2700 2726 4.074970 CACTTCTGCTTTGATACACCCTT 58.925 43.478 0.00 0.00 0.00 3.95
2701 2727 4.520492 CACTTCTGCTTTGATACACCCTTT 59.480 41.667 0.00 0.00 0.00 3.11
2702 2728 4.762251 ACTTCTGCTTTGATACACCCTTTC 59.238 41.667 0.00 0.00 0.00 2.62
2703 2729 4.640771 TCTGCTTTGATACACCCTTTCT 57.359 40.909 0.00 0.00 0.00 2.52
2704 2730 5.755409 TCTGCTTTGATACACCCTTTCTA 57.245 39.130 0.00 0.00 0.00 2.10
2705 2731 6.121776 TCTGCTTTGATACACCCTTTCTAA 57.878 37.500 0.00 0.00 0.00 2.10
2706 2732 6.539173 TCTGCTTTGATACACCCTTTCTAAA 58.461 36.000 0.00 0.00 0.00 1.85
2707 2733 7.175104 TCTGCTTTGATACACCCTTTCTAAAT 58.825 34.615 0.00 0.00 0.00 1.40
2708 2734 8.325787 TCTGCTTTGATACACCCTTTCTAAATA 58.674 33.333 0.00 0.00 0.00 1.40
2709 2735 9.125026 CTGCTTTGATACACCCTTTCTAAATAT 57.875 33.333 0.00 0.00 0.00 1.28
2760 2796 8.689061 TCCATCCATTATTGATTAGCATTATGC 58.311 33.333 9.46 9.46 45.46 3.14
2802 2838 2.043852 ACATCTCGACCTCGGGCT 60.044 61.111 0.00 0.00 40.23 5.19
2809 2845 1.144057 CGACCTCGGGCTAATGCTT 59.856 57.895 0.00 0.00 39.59 3.91
2819 2855 1.200020 GGCTAATGCTTGGTGTGTCAC 59.800 52.381 0.00 0.00 39.59 3.67
2829 2865 1.596752 GTGTGTCACACCCATGCGA 60.597 57.895 23.17 0.00 43.05 5.10
2863 2899 3.953612 CAGGCTCTATTTAAATGTGCCCA 59.046 43.478 24.40 2.76 39.68 5.36
2881 2917 5.323371 GCCCAAGCAAAATAAGTATGACA 57.677 39.130 0.00 0.00 39.53 3.58
2883 2919 6.340522 GCCCAAGCAAAATAAGTATGACAAT 58.659 36.000 0.00 0.00 39.53 2.71
2893 2929 6.851222 ATAAGTATGACAATTCCTTGAGCG 57.149 37.500 0.00 0.00 36.20 5.03
2898 2934 1.474077 GACAATTCCTTGAGCGGCATT 59.526 47.619 1.45 0.00 36.20 3.56
2901 2937 3.701040 ACAATTCCTTGAGCGGCATTAAT 59.299 39.130 1.45 0.00 36.20 1.40
2902 2938 3.996150 ATTCCTTGAGCGGCATTAATG 57.004 42.857 11.27 11.27 0.00 1.90
2903 2939 2.708216 TCCTTGAGCGGCATTAATGA 57.292 45.000 19.73 0.00 0.00 2.57
2904 2940 2.997980 TCCTTGAGCGGCATTAATGAA 58.002 42.857 19.73 2.48 0.00 2.57
2905 2941 2.945008 TCCTTGAGCGGCATTAATGAAG 59.055 45.455 19.73 11.59 0.00 3.02
2906 2942 2.945008 CCTTGAGCGGCATTAATGAAGA 59.055 45.455 19.73 0.00 0.00 2.87
2907 2943 3.378112 CCTTGAGCGGCATTAATGAAGAA 59.622 43.478 19.73 1.95 0.00 2.52
2908 2944 4.142403 CCTTGAGCGGCATTAATGAAGAAA 60.142 41.667 19.73 4.49 0.00 2.52
2909 2945 5.384063 TTGAGCGGCATTAATGAAGAAAA 57.616 34.783 19.73 3.17 0.00 2.29
2910 2946 5.581126 TGAGCGGCATTAATGAAGAAAAT 57.419 34.783 19.73 0.00 0.00 1.82
2911 2947 6.691754 TGAGCGGCATTAATGAAGAAAATA 57.308 33.333 19.73 0.00 0.00 1.40
2912 2948 7.275888 TGAGCGGCATTAATGAAGAAAATAT 57.724 32.000 19.73 0.00 0.00 1.28
2913 2949 8.389779 TGAGCGGCATTAATGAAGAAAATATA 57.610 30.769 19.73 0.00 0.00 0.86
2914 2950 8.289618 TGAGCGGCATTAATGAAGAAAATATAC 58.710 33.333 19.73 0.00 0.00 1.47
2915 2951 7.593825 AGCGGCATTAATGAAGAAAATATACC 58.406 34.615 19.73 5.12 0.00 2.73
2916 2952 6.523201 GCGGCATTAATGAAGAAAATATACCG 59.477 38.462 19.73 16.56 36.56 4.02
2917 2953 7.581476 CGGCATTAATGAAGAAAATATACCGT 58.419 34.615 19.73 0.00 0.00 4.83
2918 2954 8.714179 CGGCATTAATGAAGAAAATATACCGTA 58.286 33.333 19.73 0.00 0.00 4.02
2923 2959 7.964604 AATGAAGAAAATATACCGTAGAGGC 57.035 36.000 0.00 0.00 46.52 4.70
2924 2960 6.474140 TGAAGAAAATATACCGTAGAGGCA 57.526 37.500 0.00 0.00 46.52 4.75
2925 2961 6.880484 TGAAGAAAATATACCGTAGAGGCAA 58.120 36.000 0.00 0.00 46.52 4.52
2926 2962 7.506114 TGAAGAAAATATACCGTAGAGGCAAT 58.494 34.615 0.00 0.00 46.52 3.56
2927 2963 8.644216 TGAAGAAAATATACCGTAGAGGCAATA 58.356 33.333 0.00 0.00 46.52 1.90
2928 2964 9.485206 GAAGAAAATATACCGTAGAGGCAATAA 57.515 33.333 0.00 0.00 46.52 1.40
2936 2972 6.920569 ACCGTAGAGGCAATAATAAAGTTG 57.079 37.500 0.00 0.00 46.52 3.16
2937 2973 6.412214 ACCGTAGAGGCAATAATAAAGTTGT 58.588 36.000 0.00 0.00 46.52 3.32
2938 2974 6.882678 ACCGTAGAGGCAATAATAAAGTTGTT 59.117 34.615 0.00 0.00 46.52 2.83
2939 2975 8.042515 ACCGTAGAGGCAATAATAAAGTTGTTA 58.957 33.333 0.00 0.00 46.52 2.41
2940 2976 9.052759 CCGTAGAGGCAATAATAAAGTTGTTAT 57.947 33.333 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.428746 AAGACATCGTCGAGAAGATGG 57.571 47.619 24.83 12.46 46.71 3.51
8 9 4.768130 AGAAAAGACATCGTCGAGAAGA 57.232 40.909 0.00 0.00 37.67 2.87
14 15 4.144555 GCAAAGAAGAAAAGACATCGTCG 58.855 43.478 0.00 0.00 37.67 5.12
46 48 2.647299 ACCAACCTGACCACCAATATGA 59.353 45.455 0.00 0.00 0.00 2.15
94 96 3.198417 ACCGGGGTAAAATCGATACAACT 59.802 43.478 6.32 0.00 0.00 3.16
104 106 2.815503 CTGACGAAAACCGGGGTAAAAT 59.184 45.455 6.32 0.00 43.93 1.82
110 112 0.949105 CTGTCTGACGAAAACCGGGG 60.949 60.000 6.32 0.00 43.93 5.73
129 139 9.683069 TTCATTGATTAAGAAAAGAGCAAGAAC 57.317 29.630 0.00 0.00 0.00 3.01
134 144 9.426837 CCATTTTCATTGATTAAGAAAAGAGCA 57.573 29.630 0.00 0.00 42.42 4.26
135 145 9.428097 ACCATTTTCATTGATTAAGAAAAGAGC 57.572 29.630 0.00 0.00 42.42 4.09
180 193 3.756117 AGTCCTCGGAGCATTTCTTTTT 58.244 40.909 0.00 0.00 0.00 1.94
191 204 2.770164 AAATGGTCAAGTCCTCGGAG 57.230 50.000 0.00 0.00 0.00 4.63
207 221 6.866770 TCGAGAAAAGAACGTCTGATGTAAAT 59.133 34.615 2.42 0.00 0.00 1.40
294 308 0.392193 ATCAGAAGAGCTGTTGGGCG 60.392 55.000 0.00 0.00 45.14 6.13
326 340 1.878953 AGGCTTCACACACGGTTTAG 58.121 50.000 0.00 0.00 0.00 1.85
346 360 1.594331 GAGCCTCGTCCAAACAAAGT 58.406 50.000 0.00 0.00 0.00 2.66
347 361 0.875059 GGAGCCTCGTCCAAACAAAG 59.125 55.000 0.00 0.00 36.51 2.77
348 362 0.472471 AGGAGCCTCGTCCAAACAAA 59.528 50.000 0.00 0.00 39.34 2.83
349 363 0.034896 GAGGAGCCTCGTCCAAACAA 59.965 55.000 2.98 0.00 39.34 2.83
350 364 0.832135 AGAGGAGCCTCGTCCAAACA 60.832 55.000 10.64 0.00 46.90 2.83
351 365 0.390472 CAGAGGAGCCTCGTCCAAAC 60.390 60.000 10.64 0.00 46.90 2.93
352 366 0.541998 TCAGAGGAGCCTCGTCCAAA 60.542 55.000 10.64 0.00 46.90 3.28
353 367 1.076727 TCAGAGGAGCCTCGTCCAA 59.923 57.895 10.64 0.00 46.90 3.53
354 368 1.679305 GTCAGAGGAGCCTCGTCCA 60.679 63.158 10.64 0.00 46.90 4.02
355 369 2.766400 CGTCAGAGGAGCCTCGTCC 61.766 68.421 10.64 2.33 46.90 4.79
356 370 0.743701 TACGTCAGAGGAGCCTCGTC 60.744 60.000 10.69 6.30 46.90 4.20
357 371 1.025647 GTACGTCAGAGGAGCCTCGT 61.026 60.000 10.69 8.30 46.90 4.18
358 372 0.745128 AGTACGTCAGAGGAGCCTCG 60.745 60.000 10.69 6.49 46.90 4.63
359 373 0.736053 CAGTACGTCAGAGGAGCCTC 59.264 60.000 8.50 8.50 43.03 4.70
360 374 1.316706 GCAGTACGTCAGAGGAGCCT 61.317 60.000 0.00 0.00 0.00 4.58
361 375 1.139947 GCAGTACGTCAGAGGAGCC 59.860 63.158 0.00 0.00 0.00 4.70
362 376 0.179150 CTGCAGTACGTCAGAGGAGC 60.179 60.000 5.25 0.00 32.26 4.70
363 377 0.453793 CCTGCAGTACGTCAGAGGAG 59.546 60.000 13.81 0.00 32.26 3.69
364 378 0.965866 CCCTGCAGTACGTCAGAGGA 60.966 60.000 13.81 0.00 32.26 3.71
365 379 1.513158 CCCTGCAGTACGTCAGAGG 59.487 63.158 13.81 12.06 32.26 3.69
366 380 1.153745 GCCCTGCAGTACGTCAGAG 60.154 63.158 13.81 6.74 32.26 3.35
367 381 2.970639 GCCCTGCAGTACGTCAGA 59.029 61.111 13.81 0.00 32.26 3.27
368 382 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
369 383 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
384 398 3.357079 GTCAGTGGCCCAACTGCG 61.357 66.667 16.60 0.00 45.93 5.18
385 399 1.181098 AATGTCAGTGGCCCAACTGC 61.181 55.000 16.60 12.53 45.93 4.40
387 401 0.540365 CCAATGTCAGTGGCCCAACT 60.540 55.000 6.35 0.00 0.00 3.16
388 402 1.966762 CCAATGTCAGTGGCCCAAC 59.033 57.895 6.35 0.00 0.00 3.77
389 403 4.517663 CCAATGTCAGTGGCCCAA 57.482 55.556 6.35 0.00 0.00 4.12
394 408 1.978617 GGTGGGCCAATGTCAGTGG 60.979 63.158 15.08 15.08 39.33 4.00
395 409 1.075482 AGGTGGGCCAATGTCAGTG 59.925 57.895 8.40 0.00 37.19 3.66
396 410 1.075482 CAGGTGGGCCAATGTCAGT 59.925 57.895 8.40 0.00 37.19 3.41
397 411 0.962356 GACAGGTGGGCCAATGTCAG 60.962 60.000 32.61 15.11 38.85 3.51
398 412 1.074775 GACAGGTGGGCCAATGTCA 59.925 57.895 32.61 1.76 38.85 3.58
399 413 0.962356 CTGACAGGTGGGCCAATGTC 60.962 60.000 31.68 31.68 39.23 3.06
400 414 1.075482 CTGACAGGTGGGCCAATGT 59.925 57.895 21.93 21.93 37.19 2.71
401 415 1.075482 ACTGACAGGTGGGCCAATG 59.925 57.895 8.40 13.53 37.19 2.82
402 416 1.075482 CACTGACAGGTGGGCCAAT 59.925 57.895 8.40 0.00 37.19 3.16
403 417 2.515398 CACTGACAGGTGGGCCAA 59.485 61.111 8.40 0.00 37.19 4.52
409 423 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
410 424 2.078665 AGTTGGGCCACTGACAGGT 61.079 57.895 5.23 0.00 0.00 4.00
411 425 1.601759 CAGTTGGGCCACTGACAGG 60.602 63.158 23.45 7.08 46.29 4.00
412 426 2.263741 GCAGTTGGGCCACTGACAG 61.264 63.158 28.71 15.14 46.29 3.51
413 427 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
414 428 3.357079 CGCAGTTGGGCCACTGAC 61.357 66.667 28.71 17.09 46.29 3.51
429 443 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
430 444 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
431 445 2.125512 CCTGACGTACTGCAGGGC 60.126 66.667 19.93 9.18 46.24 5.19
434 448 1.513158 CTCCCCTGACGTACTGCAG 59.487 63.158 13.48 13.48 0.00 4.41
435 449 2.646175 GCTCCCCTGACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
436 450 2.184579 GCTCCCCTGACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
437 451 2.893398 GGCTCCCCTGACGTACTG 59.107 66.667 0.00 0.00 0.00 2.74
438 452 2.754658 CGGCTCCCCTGACGTACT 60.755 66.667 0.00 0.00 33.11 2.73
439 453 2.753043 TCGGCTCCCCTGACGTAC 60.753 66.667 0.00 0.00 39.83 3.67
440 454 2.439701 CTCGGCTCCCCTGACGTA 60.440 66.667 0.00 0.00 39.83 3.57
441 455 4.680537 ACTCGGCTCCCCTGACGT 62.681 66.667 0.00 0.00 39.83 4.34
442 456 3.827898 GACTCGGCTCCCCTGACG 61.828 72.222 0.00 0.00 40.31 4.35
443 457 3.462678 GGACTCGGCTCCCCTGAC 61.463 72.222 0.00 0.00 0.00 3.51
444 458 3.992641 TGGACTCGGCTCCCCTGA 61.993 66.667 0.00 0.00 0.00 3.86
445 459 3.775654 GTGGACTCGGCTCCCCTG 61.776 72.222 0.00 0.00 0.00 4.45
446 460 3.547787 AAGTGGACTCGGCTCCCCT 62.548 63.158 0.00 0.00 0.00 4.79
447 461 2.593956 AAAGTGGACTCGGCTCCCC 61.594 63.158 0.00 0.00 0.00 4.81
448 462 1.376037 CAAAGTGGACTCGGCTCCC 60.376 63.158 0.00 0.00 0.00 4.30
449 463 0.250338 AACAAAGTGGACTCGGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
450 464 1.594331 AAACAAAGTGGACTCGGCTC 58.406 50.000 0.00 0.00 0.00 4.70
451 465 2.104281 AGTAAACAAAGTGGACTCGGCT 59.896 45.455 0.00 0.00 0.00 5.52
452 466 2.479275 GAGTAAACAAAGTGGACTCGGC 59.521 50.000 0.00 0.00 0.00 5.54
453 467 3.064931 GGAGTAAACAAAGTGGACTCGG 58.935 50.000 0.00 0.00 37.91 4.63
454 468 3.493503 GTGGAGTAAACAAAGTGGACTCG 59.506 47.826 0.00 0.00 37.91 4.18
455 469 3.493503 CGTGGAGTAAACAAAGTGGACTC 59.506 47.826 0.00 0.00 36.60 3.36
456 470 3.133362 TCGTGGAGTAAACAAAGTGGACT 59.867 43.478 0.00 0.00 0.00 3.85
457 471 3.460103 TCGTGGAGTAAACAAAGTGGAC 58.540 45.455 0.00 0.00 0.00 4.02
458 472 3.724374 CTCGTGGAGTAAACAAAGTGGA 58.276 45.455 0.00 0.00 0.00 4.02
459 473 2.223377 GCTCGTGGAGTAAACAAAGTGG 59.777 50.000 0.00 0.00 31.39 4.00
460 474 2.869801 TGCTCGTGGAGTAAACAAAGTG 59.130 45.455 0.00 0.00 31.39 3.16
484 498 3.343617 TCATTTAAGTTTCCGCCTCCAG 58.656 45.455 0.00 0.00 0.00 3.86
511 525 1.964933 GGAGTAGTAGGTGGCTCATCC 59.035 57.143 0.00 0.00 0.00 3.51
528 542 4.689345 ACAAGTAATTCGAAACGGAAGGAG 59.311 41.667 0.00 0.00 0.00 3.69
529 543 4.634199 ACAAGTAATTCGAAACGGAAGGA 58.366 39.130 0.00 0.00 0.00 3.36
530 544 4.142966 GGACAAGTAATTCGAAACGGAAGG 60.143 45.833 0.00 0.00 0.00 3.46
532 546 4.634199 AGGACAAGTAATTCGAAACGGAA 58.366 39.130 0.00 0.00 0.00 4.30
534 548 5.404946 TCTAGGACAAGTAATTCGAAACGG 58.595 41.667 0.00 0.00 0.00 4.44
535 549 7.521509 AATCTAGGACAAGTAATTCGAAACG 57.478 36.000 0.00 0.00 0.00 3.60
537 551 9.760077 GGATAATCTAGGACAAGTAATTCGAAA 57.240 33.333 0.00 0.00 0.00 3.46
538 552 8.080417 CGGATAATCTAGGACAAGTAATTCGAA 58.920 37.037 0.00 0.00 0.00 3.71
539 553 7.230108 ACGGATAATCTAGGACAAGTAATTCGA 59.770 37.037 0.00 0.00 0.00 3.71
540 554 7.368833 ACGGATAATCTAGGACAAGTAATTCG 58.631 38.462 0.00 0.00 0.00 3.34
543 557 9.756571 AGATACGGATAATCTAGGACAAGTAAT 57.243 33.333 0.00 0.00 31.88 1.89
546 560 9.584008 TTTAGATACGGATAATCTAGGACAAGT 57.416 33.333 0.00 0.00 37.28 3.16
547 561 9.843334 GTTTAGATACGGATAATCTAGGACAAG 57.157 37.037 0.00 0.00 37.28 3.16
548 562 9.358406 TGTTTAGATACGGATAATCTAGGACAA 57.642 33.333 0.00 0.00 37.28 3.18
549 563 8.929260 TGTTTAGATACGGATAATCTAGGACA 57.071 34.615 0.00 0.00 37.28 4.02
561 575 9.582431 CTTGTCTTAGAATTGTTTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
562 576 9.367444 ACTTGTCTTAGAATTGTTTAGATACGG 57.633 33.333 0.00 0.00 0.00 4.02
570 584 9.280174 TCCGAATTACTTGTCTTAGAATTGTTT 57.720 29.630 0.00 0.00 0.00 2.83
571 585 8.842358 TCCGAATTACTTGTCTTAGAATTGTT 57.158 30.769 0.00 0.00 0.00 2.83
572 586 8.718734 GTTCCGAATTACTTGTCTTAGAATTGT 58.281 33.333 0.00 0.00 0.00 2.71
573 587 7.898309 CGTTCCGAATTACTTGTCTTAGAATTG 59.102 37.037 0.00 0.00 0.00 2.32
574 588 7.064253 CCGTTCCGAATTACTTGTCTTAGAATT 59.936 37.037 0.00 0.00 0.00 2.17
575 589 6.534079 CCGTTCCGAATTACTTGTCTTAGAAT 59.466 38.462 0.00 0.00 0.00 2.40
576 590 5.865552 CCGTTCCGAATTACTTGTCTTAGAA 59.134 40.000 0.00 0.00 0.00 2.10
577 591 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
578 592 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
579 593 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
580 594 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
581 595 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
582 596 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
583 597 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
584 598 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
585 599 2.181975 TCCCTCCGTTCCGAATTACTT 58.818 47.619 0.00 0.00 0.00 2.24
586 600 1.856629 TCCCTCCGTTCCGAATTACT 58.143 50.000 0.00 0.00 0.00 2.24
587 601 2.678471 TTCCCTCCGTTCCGAATTAC 57.322 50.000 0.00 0.00 0.00 1.89
588 602 6.127253 GGATATATTCCCTCCGTTCCGAATTA 60.127 42.308 0.00 0.00 38.75 1.40
589 603 5.338137 GGATATATTCCCTCCGTTCCGAATT 60.338 44.000 0.00 0.00 38.75 2.17
590 604 4.161754 GGATATATTCCCTCCGTTCCGAAT 59.838 45.833 0.00 0.00 38.75 3.34
591 605 3.512724 GGATATATTCCCTCCGTTCCGAA 59.487 47.826 0.00 0.00 38.75 4.30
592 606 3.094572 GGATATATTCCCTCCGTTCCGA 58.905 50.000 0.00 0.00 38.75 4.55
593 607 3.097614 AGGATATATTCCCTCCGTTCCG 58.902 50.000 0.00 0.00 46.81 4.30
594 608 6.408206 CCAATAGGATATATTCCCTCCGTTCC 60.408 46.154 0.00 0.00 46.81 3.62
595 609 6.583562 CCAATAGGATATATTCCCTCCGTTC 58.416 44.000 0.00 0.00 46.81 3.95
596 610 5.104485 GCCAATAGGATATATTCCCTCCGTT 60.104 44.000 0.00 0.00 46.81 4.44
597 611 4.409247 GCCAATAGGATATATTCCCTCCGT 59.591 45.833 0.00 0.00 46.81 4.69
598 612 4.408921 TGCCAATAGGATATATTCCCTCCG 59.591 45.833 0.00 0.00 46.81 4.63
599 613 5.688766 GCTGCCAATAGGATATATTCCCTCC 60.689 48.000 0.00 0.00 46.81 4.30
600 614 5.372373 GCTGCCAATAGGATATATTCCCTC 58.628 45.833 0.00 0.00 46.81 4.30
601 615 4.141620 CGCTGCCAATAGGATATATTCCCT 60.142 45.833 0.00 0.00 46.81 4.20
602 616 4.130118 CGCTGCCAATAGGATATATTCCC 58.870 47.826 0.00 0.00 46.81 3.97
603 617 4.130118 CCGCTGCCAATAGGATATATTCC 58.870 47.826 0.00 0.00 45.85 3.01
604 618 4.130118 CCCGCTGCCAATAGGATATATTC 58.870 47.826 0.00 0.00 36.89 1.75
605 619 3.117888 CCCCGCTGCCAATAGGATATATT 60.118 47.826 0.00 0.00 36.89 1.28
606 620 2.439507 CCCCGCTGCCAATAGGATATAT 59.560 50.000 0.00 0.00 36.89 0.86
607 621 1.837439 CCCCGCTGCCAATAGGATATA 59.163 52.381 0.00 0.00 36.89 0.86
608 622 0.620556 CCCCGCTGCCAATAGGATAT 59.379 55.000 0.00 0.00 36.89 1.63
609 623 0.472925 TCCCCGCTGCCAATAGGATA 60.473 55.000 0.00 0.00 36.89 2.59
610 624 1.136329 ATCCCCGCTGCCAATAGGAT 61.136 55.000 0.00 0.00 36.89 3.24
611 625 0.472925 TATCCCCGCTGCCAATAGGA 60.473 55.000 0.00 0.00 36.89 2.94
612 626 0.321653 GTATCCCCGCTGCCAATAGG 60.322 60.000 0.00 0.00 38.23 2.57
613 627 0.670546 CGTATCCCCGCTGCCAATAG 60.671 60.000 0.00 0.00 0.00 1.73
624 638 1.339644 TACTGGCCAACCGTATCCCC 61.340 60.000 7.01 0.00 39.70 4.81
639 653 6.317857 GCCAGTTAAATTTTGAGAGCTACTG 58.682 40.000 0.00 0.00 0.00 2.74
780 794 1.938657 CTCGCGCCTTCTCTTCTCCA 61.939 60.000 0.00 0.00 0.00 3.86
1281 1295 2.805353 CGGTCGAACTCTGCCACG 60.805 66.667 0.00 0.00 0.00 4.94
2018 2032 4.120085 CATCAGCTGCTCGCATGA 57.880 55.556 9.47 0.00 42.61 3.07
2062 2076 2.866762 GCTAATGGCTACACAGTACAGC 59.133 50.000 0.00 0.00 38.06 4.40
2101 2121 6.403049 AGATGGTGAATCGTTACACATACAA 58.597 36.000 0.00 0.00 40.54 2.41
2105 2125 4.112634 CGAGATGGTGAATCGTTACACAT 58.887 43.478 0.00 0.00 40.54 3.21
2135 2155 3.057596 GCACCATTTCCAATTTGAGTCGA 60.058 43.478 0.00 0.00 0.00 4.20
2144 2164 5.410067 CAAATTCTACGCACCATTTCCAAT 58.590 37.500 0.00 0.00 0.00 3.16
2154 2174 4.225984 TGACATTTGCAAATTCTACGCAC 58.774 39.130 21.95 8.96 34.87 5.34
2190 2210 4.575885 AGAGCGGCAATTTACAAGTTAGA 58.424 39.130 1.45 0.00 0.00 2.10
2297 2317 5.880341 ACAAAGCTAGTCACAAAGTTTGAC 58.120 37.500 22.23 10.85 43.24 3.18
2298 2318 7.497579 TCATACAAAGCTAGTCACAAAGTTTGA 59.502 33.333 22.23 0.00 0.00 2.69
2299 2319 7.639039 TCATACAAAGCTAGTCACAAAGTTTG 58.361 34.615 14.13 14.13 0.00 2.93
2300 2320 7.801716 TCATACAAAGCTAGTCACAAAGTTT 57.198 32.000 0.00 0.00 0.00 2.66
2301 2321 7.801716 TTCATACAAAGCTAGTCACAAAGTT 57.198 32.000 0.00 0.00 0.00 2.66
2302 2322 7.801716 TTTCATACAAAGCTAGTCACAAAGT 57.198 32.000 0.00 0.00 0.00 2.66
2395 2415 9.612066 AATATCAACATCCACAAAACAAAAGTT 57.388 25.926 0.00 0.00 0.00 2.66
2396 2416 9.044150 CAATATCAACATCCACAAAACAAAAGT 57.956 29.630 0.00 0.00 0.00 2.66
2397 2417 9.044150 ACAATATCAACATCCACAAAACAAAAG 57.956 29.630 0.00 0.00 0.00 2.27
2398 2418 8.954950 ACAATATCAACATCCACAAAACAAAA 57.045 26.923 0.00 0.00 0.00 2.44
2399 2419 8.954950 AACAATATCAACATCCACAAAACAAA 57.045 26.923 0.00 0.00 0.00 2.83
2400 2420 8.954950 AAACAATATCAACATCCACAAAACAA 57.045 26.923 0.00 0.00 0.00 2.83
2401 2421 8.420222 AGAAACAATATCAACATCCACAAAACA 58.580 29.630 0.00 0.00 0.00 2.83
2402 2422 8.816640 AGAAACAATATCAACATCCACAAAAC 57.183 30.769 0.00 0.00 0.00 2.43
2444 2464 6.544928 AAGATTTGGGTCAAAGTCAAACTT 57.455 33.333 0.00 0.00 40.80 2.66
2445 2465 6.605594 TGTAAGATTTGGGTCAAAGTCAAACT 59.394 34.615 0.00 0.00 36.76 2.66
2446 2466 6.801575 TGTAAGATTTGGGTCAAAGTCAAAC 58.198 36.000 0.00 2.26 36.76 2.93
2447 2467 7.595819 ATGTAAGATTTGGGTCAAAGTCAAA 57.404 32.000 0.00 0.00 36.76 2.69
2448 2468 7.094975 CGTATGTAAGATTTGGGTCAAAGTCAA 60.095 37.037 0.00 0.00 36.76 3.18
2449 2469 6.370442 CGTATGTAAGATTTGGGTCAAAGTCA 59.630 38.462 0.00 0.00 36.76 3.41
2450 2470 6.592607 TCGTATGTAAGATTTGGGTCAAAGTC 59.407 38.462 0.00 0.00 36.76 3.01
2451 2471 6.469410 TCGTATGTAAGATTTGGGTCAAAGT 58.531 36.000 0.00 0.00 36.76 2.66
2452 2472 6.978343 TCGTATGTAAGATTTGGGTCAAAG 57.022 37.500 0.00 0.00 36.76 2.77
2453 2473 6.711194 TGTTCGTATGTAAGATTTGGGTCAAA 59.289 34.615 0.00 0.00 37.75 2.69
2454 2474 6.231951 TGTTCGTATGTAAGATTTGGGTCAA 58.768 36.000 0.00 0.00 0.00 3.18
2455 2475 5.795972 TGTTCGTATGTAAGATTTGGGTCA 58.204 37.500 0.00 0.00 0.00 4.02
2456 2476 6.730960 TTGTTCGTATGTAAGATTTGGGTC 57.269 37.500 0.00 0.00 0.00 4.46
2457 2477 7.513371 TTTTGTTCGTATGTAAGATTTGGGT 57.487 32.000 0.00 0.00 0.00 4.51
2479 2499 6.801575 TGCATTACTTTCTCCGTTTCTTTTT 58.198 32.000 0.00 0.00 0.00 1.94
2480 2500 6.385649 TGCATTACTTTCTCCGTTTCTTTT 57.614 33.333 0.00 0.00 0.00 2.27
2481 2501 6.262273 TCTTGCATTACTTTCTCCGTTTCTTT 59.738 34.615 0.00 0.00 0.00 2.52
2482 2502 5.763204 TCTTGCATTACTTTCTCCGTTTCTT 59.237 36.000 0.00 0.00 0.00 2.52
2483 2503 5.305585 TCTTGCATTACTTTCTCCGTTTCT 58.694 37.500 0.00 0.00 0.00 2.52
2484 2504 5.179555 ACTCTTGCATTACTTTCTCCGTTTC 59.820 40.000 0.00 0.00 0.00 2.78
2485 2505 5.063880 ACTCTTGCATTACTTTCTCCGTTT 58.936 37.500 0.00 0.00 0.00 3.60
2486 2506 4.642429 ACTCTTGCATTACTTTCTCCGTT 58.358 39.130 0.00 0.00 0.00 4.44
2487 2507 4.273148 ACTCTTGCATTACTTTCTCCGT 57.727 40.909 0.00 0.00 0.00 4.69
2488 2508 4.932200 AGAACTCTTGCATTACTTTCTCCG 59.068 41.667 0.00 0.00 0.00 4.63
2489 2509 7.100409 AGTAGAACTCTTGCATTACTTTCTCC 58.900 38.462 0.00 0.00 0.00 3.71
2490 2510 8.541133 AAGTAGAACTCTTGCATTACTTTCTC 57.459 34.615 0.00 0.00 29.68 2.87
2491 2511 9.998106 TTAAGTAGAACTCTTGCATTACTTTCT 57.002 29.630 0.00 0.00 34.34 2.52
2495 2515 8.722394 GCTTTTAAGTAGAACTCTTGCATTACT 58.278 33.333 0.00 0.00 0.00 2.24
2496 2516 8.722394 AGCTTTTAAGTAGAACTCTTGCATTAC 58.278 33.333 0.00 0.00 0.00 1.89
2500 2520 6.288294 TCAGCTTTTAAGTAGAACTCTTGCA 58.712 36.000 0.00 0.00 0.00 4.08
2503 2523 8.150945 TCACATCAGCTTTTAAGTAGAACTCTT 58.849 33.333 0.00 0.00 0.00 2.85
2545 2571 0.467384 GCCTCAGCTGCTAATCCTGA 59.533 55.000 9.47 0.00 35.50 3.86
2593 2619 8.253113 CCTACGTAACCTTCTAAACAAATCCTA 58.747 37.037 0.00 0.00 0.00 2.94
2656 2682 0.179018 AGGAAAAACACTGCCGCTCT 60.179 50.000 0.00 0.00 0.00 4.09
2661 2687 3.801114 AGTGAAAGGAAAAACACTGCC 57.199 42.857 0.00 0.00 41.16 4.85
2705 2731 9.567776 TCCACCGTTGATATGTTTTGATATATT 57.432 29.630 0.00 0.00 0.00 1.28
2706 2732 9.219603 CTCCACCGTTGATATGTTTTGATATAT 57.780 33.333 0.00 0.00 0.00 0.86
2707 2733 7.659799 CCTCCACCGTTGATATGTTTTGATATA 59.340 37.037 0.00 0.00 0.00 0.86
2708 2734 6.486657 CCTCCACCGTTGATATGTTTTGATAT 59.513 38.462 0.00 0.00 0.00 1.63
2709 2735 5.820423 CCTCCACCGTTGATATGTTTTGATA 59.180 40.000 0.00 0.00 0.00 2.15
2710 2736 4.640201 CCTCCACCGTTGATATGTTTTGAT 59.360 41.667 0.00 0.00 0.00 2.57
2713 2739 4.007659 GACCTCCACCGTTGATATGTTTT 58.992 43.478 0.00 0.00 0.00 2.43
2760 2796 1.859574 AGGGAAGGGGATTAATGGTGG 59.140 52.381 0.00 0.00 0.00 4.61
2819 2855 1.378882 CCACATCCTTCGCATGGGTG 61.379 60.000 9.86 2.81 41.27 4.61
2829 2865 0.913451 AGAGCCTGAGCCACATCCTT 60.913 55.000 0.00 0.00 41.25 3.36
2863 2899 9.643693 CAAGGAATTGTCATACTTATTTTGCTT 57.356 29.630 0.00 0.00 0.00 3.91
2871 2907 5.116180 CCGCTCAAGGAATTGTCATACTTA 58.884 41.667 0.00 0.00 0.00 2.24
2881 2917 3.953612 TCATTAATGCCGCTCAAGGAATT 59.046 39.130 10.76 0.00 42.15 2.17
2883 2919 2.997980 TCATTAATGCCGCTCAAGGAA 58.002 42.857 10.76 0.00 0.00 3.36
2898 2934 8.644216 TGCCTCTACGGTATATTTTCTTCATTA 58.356 33.333 0.00 0.00 34.25 1.90
2901 2937 6.474140 TGCCTCTACGGTATATTTTCTTCA 57.526 37.500 0.00 0.00 34.25 3.02
2902 2938 7.964604 ATTGCCTCTACGGTATATTTTCTTC 57.035 36.000 0.00 0.00 34.25 2.87
2910 2946 9.701098 CAACTTTATTATTGCCTCTACGGTATA 57.299 33.333 0.00 0.00 34.25 1.47
2911 2947 8.208903 ACAACTTTATTATTGCCTCTACGGTAT 58.791 33.333 0.00 0.00 34.25 2.73
2912 2948 7.558604 ACAACTTTATTATTGCCTCTACGGTA 58.441 34.615 0.00 0.00 34.25 4.02
2913 2949 6.412214 ACAACTTTATTATTGCCTCTACGGT 58.588 36.000 0.00 0.00 34.25 4.83
2914 2950 6.920569 ACAACTTTATTATTGCCTCTACGG 57.079 37.500 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.