>input_sequence_63839
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-----------------------------------------------------ATGCTGGCTCACCCGGGCGGGGTCGGG
GTGGTCCGAGCTTCGGTGGCCAGGGAGCCCCTCTTCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGA
CGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTATCGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACA
GCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTTCGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTTTCA
GCCGTGCAGGCCGTCGTGGCAGAGTTCGACCGGTTCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTA
CAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTGCGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGT
ACAGGTTCGTGGTCCTGGACGCGTACGACTTCAGTGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGG
AGGTTCCTGGAGGAGAGGAACCCGAACTCGGATAAAAACAGCCCGACCGGGCTGGCAGGGGAGGACCGGCGGTTCGTGAT
GTTCAACGGCGGCGTGGGCGAGGAGCAGCTTCGGTGGCTGGACGGCGTCCTGCGGGACGCGTCGCGGCGCGGGGAGACCG
TGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGGTGCGGCGTCCCCCGCGGGGCTTATGTGGAACTACGAGGAGGCGCTG
GCAGTGGTGCACCGGCACGGATGCGTCGCGGCGTGCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTGGACGCGTG
CGGCGTGCACCACCGCACCCTGGAGGCCGCGCTCGAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCC
CCGGCAGGCTGTCGCTCGCCGGATCCGGCAGGATGGCGAGCACCGACATGCTGCTCACCCTCCCTCGGCTGAGCTAG---
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>chr7A_1_TraesCS7A01G278400
CGCTTCCATCTTCTCGACGATGTCTTTTCTTCTTTGCAA-TCATGTTTCATATTGGTGGTCAGGTTGGTCGGCGGTGCCC
ATATTACGTGGGTTGAGTTGTATCGATTTTACCCCGGTTTTCGTCA--------GACAGTTCTTGCTCTTTTCTTAATCA
ATGAAAATGGTA---CTTTTGCCTTGTTTTAAAAAAAGAAATGCTCCGAGGACTT-GACCATTTACATCAGACGTTCTTT
TCTCGAAAATCCTTAAGACTCATCGTACGCGAGCTGTCACGACGCTGAAATTTGTAGTACGTTAGTACGCCCAACAGCTC
TTCTGATTTGCCTTTTACTCTAAACCGTGTGTGAAGCCTACTTTGTTTGGACGAGGCTCCTCTGACGTACTGCAGGGCGC
AGTTGGGCCACTGACATTGGCCCACCTGTCAGTGGCCCAACTGCGCCCTGCAGTACGTCAGGGGAGCCGAGTCCACTTTG
TTTACTCCACGAGCATACTGGAGGCGGAAACTTAAATGAAATATGGATGAGCCACCTACTACTCCTTCCGTTTCGAATTA
CTTGTCCTAGATTATCCGTATCTAAACAATTCTAAGACAAGTAATTCGGAACGGAGGGAATATATCCTATTGGCAGCGGG
GATACGGTTGGCCAGTAGCTCTCAAAATTTAACTGGCGATATGAATATGATTCCTTGGACAAGATGGCGCCACGTGTGGA
GCGGACCACCGTCCACTTGCTTGTGCCACGTGATGATATCATCCATCGCCTCCCACCGCGCAGTCCGGTGCTCTGGAGAA
GAGAAGGCGCGAGGTTCGCCGGAGAGGAGAGGACGAACTGCTGCCGGCGGCAACCGCCACGTCGGTAAACTGCTTATACC
TAATGTGTTAACTTCACTTGAAACAAAAGCAGTTTGCAGCTAATTAAGATATCGTCTTCCTGTCCCTTTCGCCGCTGGGC
AGCAATTGATTGATTGATTCCGGCGTGTTCGACGGCGCCGGCCAGCCGCATCCATGCTGGCTCACCCGGGCGGGGTCGGG
GTGGTCCGAGCTTCGGTGGCCAGGGAGCCCCTCTTCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGA
CGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTATCGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACA
GCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTTCGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTTTCA
GCCGTGCAGGCCGTCGTGGCAGAGTTCGACCGGTTCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTA
CAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTGCGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGT
ACAGGTTCGTGGTCCTGGACGCGTACGACTTCAGTGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGG
AGGTTCCTGGAGGAGAGGAACCCGAACTCGGATAAAAACAGCCCGACCGGGCTGGCAGGGGAGGACCGGCGGTTCGTGAT
GTTCAACGGCGGCGTGGGCGAGGAGCAGCTTCGGTGGCTGGACGGCGTCCTGCGGGACGCGTCGCGGCGCGGGGAGACCG
TGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGGTGCGGCGTCCCCCGCGGGGCTTATGTGGAACTACGAGGAGGCGCTG
GCAGTGGTGCACCGGCACGGATGCGTCGCGGCGTGCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTGGACGCGTG
CGGCGTGCACCACCGCACCCTGGAGGCCGCGCTCGAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCC
CCGGCAGGCTGTCGCTCGCCGGATCCGGCAGGATGGCGAGCACCGACATGCTGCTCACCCTCCCTCGGCTGAGCTAGCCA
GCAGCAGCAGCAGCTGCTGCTGCTTCAGTATTCATGCGAGCAGCTGATGCTTGCTCCACTCGATCCACGGGTTCGGC---
TGTACTGTG---TAGCCATTAGCTCGCAACAGTTACTTAGTTGTATGTGTAACGATTCACCATCTCGAACTGATTCGACT
CAAATTGGAAATGGTGCGTAGAATTTGCAAATGTCATTTGGAAATGTGTTCTAACTTGTAAATTGCCGCTCTTTCTCACT
GGAGCAGCGGACAATGCTACACGTACCAAAAGTACTCCCTCCGTTTTTTTGTTTGCATATATAAAATTTGGTCAAAGTCA
AACTTTGTGACTAGCTTTGTATGAAAATATATCAACATTCACACTATGAAATCAATATTATAAATGCATGATGAAATTAA
TTTTCATAACATATAACTTTTGTTTTGTGGATGTTGATATTGTTTCTATAGTCAAACTTTACAAAGTTTGACTTTGACCC
AAATCTTACATACGAACAAAAAAGAAACGGAGAAAGTAATGCAAGAGTTCTACT------TAAAAGCTGATGTGAAGAAG
ATTAATTGGGTCAGGATTAGCAGCTGAGGCCCACCCCCGTTGAAATTCATGGGGCCAATAGGATTTGTTTAGAAGGTTAC
GTAGGTCTTCGTGGTCTATTCGTAGATGTAGCATTATTGATAGAGCGGCAGTGTTTTTCCTTTCACTTCTGCTTTGATAC
ACCCTTTCTAAATATATCA----------AAACATATCAACGGTGGAGGTCCATCCATTATTGATTAGCATTATGCCACC
ATTAATCCCCTTCCCTTGTCACATCTCGACCTCGGGCTAATGCTTGGTGTGTCACACCCATGCGAAGGATGTGGCTCAGG
CTCTATTTAAATGTGCCCAAGCAAAATAAGTATGACAATTCCTTGAGCGGCATTAATGAAGAAAATATACCGTAGAGGCA
ATAATAAAGTTGTTATTTATATTTCCTTATATCATGATAAATATTTATTATTCATGCTA
>chr7B_1
CGCTTGCAACTTCTGGACGATGTCTTTTCTTATTTGCAACTCATGATCCATATTGGTGGTCAGGTTGGCCGGTGATGCCC
ATATTACGTGGGTTGGGTTTTGTCGGTTTTAACCTGGTTTTCGTTAATTAACCGAACAATTCTCACTCTTTTCTTAGTCA
ATCAAAATGGTAATTCTTTTGCCTTGTTTTAAGAAAAGAAATGTTCCGAGGACTTGGACCTTTTACATCAGACGTTCTTT
TCTCGAAAATCCTTGAGACTCATCGTACGCGAGCTGTCACGACGCTGAAATTTGT---ACGTTAGTAGACCCAACAGCTC
TTCTGATTTGCCTTTTACTGTAAACCGTGTGTGAGGCCT-----------------------------------------
--------------------------------------------------------------------------ACTTTG
TTTACTCCACGAGCATATTGGAGGCGTAAACTTAAATGAAATATCGATTAGCCACCTACTATATCCT-------------
-------------------------------------------------------------------TATTGGCAGCCGG
GATACGGTTGGCTC-TAGCTCTCAAAATTTAACTGGCGATATGAATATGATTCCTTGGACAAGATGGCGCCACGTGTGGA
GCGGACCACCGTCCACTTGCTTGTGCCACGTGATGATATCATCCATGGCCTCCCACCGCGCAGTCCGGTGCTCCGGAGAA
GAGAAGATGCGAGGTTCGCCGGAGAGGAGAGGACGAACTGCTGCCGGCGGCAACCGCCACGCCGGTAAACTGCTTATACT
TGATGTGTTAACTTCACTTGAAACAAAAGCAGTTTGCACCTAATTAAGATATCGTCTTCCTGTCCCTTTCGCCGCTGGGC
AGCAATTGATTGATTGATTCCGGCGTGTTCGACGGCGCCGGCCAGCCGCATCCATGCTAGGTCACCCGGGCGGGGTCGGG
GTGGTCCGGGCTTCGGTGGCCAGGGAGCCCCTCTTCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGA
CGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTATCGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACA
GCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTTTGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTCTCC
GCCGTGCAGGCCGTGGTGGCAGAGTTCGACCGGTTCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTA
CAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTGCGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGT
ACAGGTTCGTGGTCCTGGACGCGTACGACTTCAGTGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGG
AGGTTCCTGGAGGAGAGGAACCCGAACTCGGATAAAAACAGCCCGACCGGGCTGGCGGGGGAGGACCGGCGGTTCGTGAT
GTTCAACGGCGGCGTGGGCGAGGAGCAGCTGCGGTGGCTGGACGGCGTCCTGCGGGACGCGTCGCGGCGCGGGGAGACCG
TGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGGCGCGGCGTCCCCCGCGGGGCTTATGTGGAACTACGAGGAGGCGCTG
GCAGTGGTGCACCGGCACGGATGCGTCGCGGCGTGCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTGGACGCGTG
CGGCGTGCACCACCGCACCCCGGAGGCCGCGCTCGAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCC
CCGGCAGGCTGTCGCTCGCCGGATCCGGCAGGATGGCGAGCACCGACACGCCGCTCGCCCTCCCTCGGCTGAGCTAGCT-
-----------AGCTGCTGCTGCTTCAGTATCCATGCGAGCGGCTGAAGCTTGCTCCACTCGATCCACGGGTTCCCTGGG
TGTACTGTG---TAGCCATTAGCTCGCAACAGTTA----GCTGTGTGTGTAACGATTCACCATCTCGAACTGATCCGACT
CAATTTGGAAATGTTGCGTAGAATTTGCAAATGTCATGTGGAAATGTGTCCTAACTTTTAAATTGTCGTTCTTTCTCACT
GGAGCAGCGGACAATGCTACG-----------------------------------------------------------
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------------------------------------------------------------TAAAAGCTGATGTGAAGAAG
ATTAATTGGGGCAGG-----CAGCTGGGCCCCATCCTGGTTGAAATTCATGGGGCCAAGAGTATTTGTTTAGAAAGTTAC
GTAGGTCTTCATGGTCTATTCGTAGATGTAGCATTATTGATGAAGCAGCAGTGTTTTTCCTTCCACTTCTGATTTGATAC
AACCTC----------TCT----------AAACATATCAATGGTGGAGGTCCATCCATTACTGATTAGCCTTATGACACC
ATTAGTCCCCTTCCCTTGTCACATCTCGACCTCGGGCCAATGCTCGGTGTGTCAGACCCACGTGGAGGATGTGGCTCATG
CTCTATTTAAATGTGCCCGAGCAAAAGAAGTATGGCGAGTCCTTGAGCTGCATGAA------------------------
-----------------------------------------------------------
>chr7D_14
TCGACG------------GATGTCTTTTCTTCTTTGCAGCTCATGTTCCATGTTGGTGGTCAGGTTGGCCGGTAGTGCCC
ATATTATGTGGGTCTGGTTGTATCGTTTTTTGCCCGATTTTCGACAATTAACTGGACAATTCTCACTCTTTTCTTAATCA
ATGAAAATGG---------TGCCTTGTTTTAAGAAAAGAAATGTTCTGAGGG-TTGGACCTTTTACATCAGACGTTCTTT
TCACGAAAATCCTTAAGACTCATCGTACGCGAGCTGTCACGACGCTGAAATTTGTA---CGTTAGTAGGCCCAACAGCTC
TTCTGATTTGCCTTTTACTGTAAACCGTGTGTGAAGCCT-----------------------------------------
--------------------------------------------------------------------------ACTTTG
TTTACTCCACGAGCATATTGGAGGCGGAAACTTAAATGAAATATCGATGAGCCACCTACTATATCCT-------------
--------------------------------------------------------------------ATTGGCAGCCGG
CATACGGTTGGCTAGTAGCTCTCAAAATTTAACCGGCGATATGAATATGATTCCTTGGACAAGATGGCACCACGTGTGGA
GCGGACCACCGTCCACTTGCTTGTGCCACGTGATGATATCATCCATCTCCTCGCACCGCGCAGTCCGGTGCTCCGGAGAA
GAGAAGTCGCGAGGTTCGCCGGAGAGGAGAGGACGAACTGCTGCCGGCGGCAACCGCCACGTCGGTAAACTGCTTATACC
CAATGTGTTAACTTTACTTGAAACAAAAGCAGTTTGCACCTAATTAAGATATCGTCTTCGTGTCCCTTTCGCCGCTGGGC
AGCAATTGATTGATTGATTCCGGCGTGTTCGACGGCGCCGGCCAGCCGCATCCATGCTAGCTCACCCGGGCGGGGTCGGG
GTGGTCCGGGCTTCGGTGGCCAGGGAGCCCCTCTTCACCTTCGGCGTCATCGCCGACGTCCAGTACGCCGACATACCGGA
CGGCCGCTCCTTCCTCGGCGTGCCTCGGTACTATCGCCACAGCATCACCGTGCTCCAGAGGGCGGTCCGCAGCTGGAACA
GCCACAAGGCCGGCGTCAAGTTCTGCGTCAACTTTGGCGACATCGTCGACGGGTTCTGCCCCAAGGACCGGTCGCTCTCC
GCCGTGCAGGCCGTGGTGGCAGAGTTCGACCGGTTCCACGGCGGCCCGGCGTACCACATGCTCGGCAACCACTGCCTGTA
CAACCTCCCAAGGAGCGAGCTGGTGTCCGTGCTGCGGATGCCTGGGCGCGCCTACTACGACTTCTCGCCGTGGCCGGGGT
ACAGGTTCGTGGTCCTGGACGCGTACGACTTCAGTGCCGTCGGCTGGCCGCGCGACCACCCTGTGGCGGCGGCGGCCAGG
AGGTTCCTGGAGGAGAGGAACCCGAACTCGGATAAAAACAGCCCGACCGGGCTGGCAGGGGAGGACCGGCGGTTCGTGAT
GTTCAACGGCGGCGTGGGCGAGGAGCAGCTGCGGTGGCTGGACGGCGTCCTGCAGGACGCGTCGCGGCGCGGGGAGACCG
TGGTGGTGTGCAGCCACCTGCCGCTCCACCCCGGCGCGGCGTCCCCTGCGGGGCTTATGTGGAACTACGAGGAGGCGCTG
GCAGTGGTGCACCGGCACGGATGCGTCGCGGCGTGCCTCGCGGGGCACGACCACAAGGGCGGGTACGCCGTCGACGCGTG
CGGCGTGCACCACCGCACCCTGGAGGCCGCGCTCGAGTGCCCGCCAGGCACCGACGCGTTTGGCCACGTCGATGTGTTCC
CCGGCAGGCTGTCGCTCGCCGGATCTGGCAGGATGGCGAGCACCGACATGCCGCTCGCCCTCCCTCGGCTGAGCTAGCT-
-----------AGCTGCTGCTGCTTCAGTA-CCATGCGAGCAGCTGATGCTTGCTCCACTCGATCCACGGGTTCCCCGAG
TGTACTGTGTAATAGCCATTAGCTCGCAACAGTTACTTAGCTGTCTGTGTAACGATTCACCATCTCGAACTGATCCGACT
CAATTTGGAAATGTTGCGTAGAATTTGCAAATGTCATGTGGAAATGTGTCCTAACTTGTAAATTGCCGCTCTCTCTCACT
GGAGCAGCGGACAATGCTACACGTACAAAAAT------------------------------------------------
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------------------------------------TAACGCGAGAGTTCTAGGAGTAGATAAAAGCTGATGTGAAGAAG
ATTAATTGGACCAGGATTAAAAGCTGGGGCTCACCTCCGTTGAAATTCATGGGGCCAAGAGGATTTGTTTAGAAGGTCAT
GTAGGTCTTCGTGGTCTATTCGTAGATGTAGCATTATTCATGGAGCACCAGTGTTTCTCTTTTTGCTTCTGCTTTGATAC
ATCCTC----------TATAAACATATCAAAACATATCAATGGTGGAGGTCCATCCATTATTGATTAGCATTATGACACC
ATTAATCCCCTTCCCTTGTCACATCTCGACCTCGGGGCAATGCTCGGTGTGTCAGACCCATGCGGAGGATGTGGTTTAGG
CTCTATTTAAATGTGCCCGAGCAAAAGAAGTATGACGAGTCCTTGGGCTGCATGAA------------------------
-----------------------------------------------------------
>SNPs
-----S--S-----S--------------------------------S--------------------S---S-------
---------------S---------S-----S--------------------------S----SS---------------
--------------------------------S----------S----------------S-------------------
--------------------------------------------------------SS---------S------------
-------------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-----------------S--------------------------S----------------SSS-S-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--
------------S-------------------------------------------------------------------
-------------------------------------------------------------------------S------
------S-------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
----------------------------------------------------------S---------------------
--------S-----------------------------------------------------------------------
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----------------------------------S-----------------------------------------S--S
--------------S-----------------------------------------------------------------
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------------------------------S-------------------------------------------------
----------------------------------S---------------------------------------------
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---------------------------------------------------S----S---------------------SS
SSSSSSSSSSS--------------------S------------------------------------------SS----
----------------------------------------S---S-----------------------------S-----
---S---------S-----------------------S-----------S------------------------------
--------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S---------SS--------------------------
----------S--------S------S-------------------------------S---------------------
-----------------------------------------S----S---------------------------------
-S---SSSSSSSSSSS--S---------------------S----------------------------------S----
-------------------------------------S------S---------S---------S---------------
------------------S-------S---------S-S---------S----S--SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_382
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------------------------------------------TTGTTTGGACGAGGCTCCTC------------------
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>reverse_1295
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--------------CGTGGCAGAGTTCGACCG------------------------------------------------
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>forward_395
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-------------------------------------------------------GCTCCTCTGACGTACTGCAG-----
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>reverse_2076
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---------------------------------------------------------------------------GCTGT
ACTGTGTAGCCATTAGC---------------------------------------------------------------
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