Multiple sequence alignment - TraesCS7A01G272100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G272100 chr7A 100.000 2842 0 0 1 2842 285577714 285574873 0.000000e+00 5249.0
1 TraesCS7A01G272100 chr7A 90.196 102 10 0 1398 1499 12429272 12429171 1.780000e-27 134.0
2 TraesCS7A01G272100 chr7A 90.196 102 10 0 1398 1499 12454961 12454860 1.780000e-27 134.0
3 TraesCS7A01G272100 chr7A 90.196 102 10 0 1398 1499 12652356 12652255 1.780000e-27 134.0
4 TraesCS7A01G272100 chr7D 87.557 2427 112 68 500 2841 262699554 262697233 0.000000e+00 2634.0
5 TraesCS7A01G272100 chr7D 90.196 102 10 0 1398 1499 13029137 13029036 1.780000e-27 134.0
6 TraesCS7A01G272100 chr7B 87.478 2300 93 88 500 2700 241107063 241109266 0.000000e+00 2471.0
7 TraesCS7A01G272100 chr7B 84.932 73 5 3 431 503 241106887 241106953 5.080000e-08 69.4
8 TraesCS7A01G272100 chr6D 85.149 404 52 7 12 410 316102347 316101947 9.480000e-110 407.0
9 TraesCS7A01G272100 chr6D 82.215 298 47 6 1148 1442 298207239 298206945 4.700000e-63 252.0
10 TraesCS7A01G272100 chr6D 79.586 338 65 4 1107 1442 297407374 297407039 3.660000e-59 239.0
11 TraesCS7A01G272100 chr6D 81.333 300 46 10 1148 1442 298399280 298398986 4.730000e-58 235.0
12 TraesCS7A01G272100 chr6D 80.405 296 54 4 1149 1442 298444766 298444473 3.690000e-54 222.0
13 TraesCS7A01G272100 chr2D 84.804 408 47 11 12 411 627957330 627957730 2.050000e-106 396.0
14 TraesCS7A01G272100 chr2D 81.905 420 65 10 1 414 484477599 484478013 7.540000e-91 344.0
15 TraesCS7A01G272100 chr4A 84.511 368 49 6 4 368 395026230 395025868 9.680000e-95 357.0
16 TraesCS7A01G272100 chr4A 89.524 105 11 0 1392 1496 724782995 724783099 1.780000e-27 134.0
17 TraesCS7A01G272100 chr1B 86.478 318 33 5 4 316 263981662 263981350 9.750000e-90 340.0
18 TraesCS7A01G272100 chr3A 88.889 270 29 1 1102 1371 633922097 633922365 5.870000e-87 331.0
19 TraesCS7A01G272100 chr3A 85.231 325 42 6 1 322 532848983 532849304 2.110000e-86 329.0
20 TraesCS7A01G272100 chr5D 84.776 335 40 10 4 332 7021698 7021369 2.730000e-85 326.0
21 TraesCS7A01G272100 chr5D 87.925 265 32 0 1107 1371 425077485 425077221 2.130000e-81 313.0
22 TraesCS7A01G272100 chr3D 81.931 404 53 16 12 411 496345201 496345588 9.820000e-85 324.0
23 TraesCS7A01G272100 chr3D 87.823 271 32 1 1101 1371 492131419 492131688 1.640000e-82 316.0
24 TraesCS7A01G272100 chr3B 81.235 405 58 14 12 409 449018983 449018590 7.650000e-81 311.0
25 TraesCS7A01G272100 chr3B 87.407 270 33 1 1102 1371 653152047 653152315 2.750000e-80 309.0
26 TraesCS7A01G272100 chr5B 87.547 265 33 0 1107 1371 514279627 514279363 9.890000e-80 307.0
27 TraesCS7A01G272100 chr1A 87.037 270 34 1 1102 1371 463461701 463461433 1.280000e-78 303.0
28 TraesCS7A01G272100 chr5A 87.170 265 34 0 1107 1371 539093485 539093221 4.600000e-78 302.0
29 TraesCS7A01G272100 chr6B 81.879 298 48 6 1148 1442 461961823 461961529 2.190000e-61 246.0
30 TraesCS7A01G272100 chr6B 80.537 298 52 6 1148 1442 461903629 461903335 1.020000e-54 224.0
31 TraesCS7A01G272100 chr6A 80.399 301 53 6 1142 1439 420973745 420974042 1.020000e-54 224.0
32 TraesCS7A01G272100 chr2B 92.857 84 6 0 1402 1485 663899225 663899308 3.840000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G272100 chr7A 285574873 285577714 2841 True 5249.0 5249 100.000 1 2842 1 chr7A.!!$R4 2841
1 TraesCS7A01G272100 chr7D 262697233 262699554 2321 True 2634.0 2634 87.557 500 2841 1 chr7D.!!$R2 2341
2 TraesCS7A01G272100 chr7B 241106887 241109266 2379 False 1270.2 2471 86.205 431 2700 2 chr7B.!!$F1 2269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.109597 CGTTCAAATGAGGGCTGTGC 60.110 55.0 0.0 0.0 0.0 4.57 F
407 408 0.179189 CGAGAGCCAAAACGCCATTC 60.179 55.0 0.0 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 1496 0.24746 TGTGGAGCTTGACGATGAGG 59.753 55.0 0.0 0.0 0.0 3.86 R
2275 2488 1.11593 ACCAGCACAACGGACTCTCT 61.116 55.0 0.0 0.0 0.0 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.648007 TTGTGGAGGGTGAGCTCT 57.352 55.556 16.19 0.00 0.00 4.09
18 19 3.786495 TTGTGGAGGGTGAGCTCTA 57.214 52.632 16.19 0.00 0.00 2.43
19 20 2.254152 TTGTGGAGGGTGAGCTCTAT 57.746 50.000 16.19 0.00 0.00 1.98
20 21 1.489481 TGTGGAGGGTGAGCTCTATG 58.511 55.000 16.19 0.00 0.00 2.23
21 22 0.755686 GTGGAGGGTGAGCTCTATGG 59.244 60.000 16.19 0.00 0.00 2.74
22 23 0.636647 TGGAGGGTGAGCTCTATGGA 59.363 55.000 16.19 0.00 0.00 3.41
23 24 1.337118 GGAGGGTGAGCTCTATGGAG 58.663 60.000 16.19 0.86 42.18 3.86
24 25 1.337118 GAGGGTGAGCTCTATGGAGG 58.663 60.000 16.19 0.00 39.80 4.30
25 26 0.762461 AGGGTGAGCTCTATGGAGGC 60.762 60.000 16.19 0.56 39.80 4.70
26 27 1.751563 GGTGAGCTCTATGGAGGCC 59.248 63.158 16.19 0.00 39.80 5.19
27 28 0.762461 GGTGAGCTCTATGGAGGCCT 60.762 60.000 16.19 3.86 39.80 5.19
28 29 0.678950 GTGAGCTCTATGGAGGCCTC 59.321 60.000 25.59 25.59 39.80 4.70
38 39 3.758172 GAGGCCTCCAAACGCAAA 58.242 55.556 23.19 0.00 0.00 3.68
39 40 2.037871 GAGGCCTCCAAACGCAAAA 58.962 52.632 23.19 0.00 0.00 2.44
40 41 0.603065 GAGGCCTCCAAACGCAAAAT 59.397 50.000 23.19 0.00 0.00 1.82
41 42 1.000843 GAGGCCTCCAAACGCAAAATT 59.999 47.619 23.19 0.00 0.00 1.82
42 43 1.000843 AGGCCTCCAAACGCAAAATTC 59.999 47.619 0.00 0.00 0.00 2.17
43 44 1.270041 GGCCTCCAAACGCAAAATTCA 60.270 47.619 0.00 0.00 0.00 2.57
44 45 2.478831 GCCTCCAAACGCAAAATTCAA 58.521 42.857 0.00 0.00 0.00 2.69
45 46 2.869192 GCCTCCAAACGCAAAATTCAAA 59.131 40.909 0.00 0.00 0.00 2.69
46 47 3.311048 GCCTCCAAACGCAAAATTCAAAA 59.689 39.130 0.00 0.00 0.00 2.44
47 48 4.024133 GCCTCCAAACGCAAAATTCAAAAT 60.024 37.500 0.00 0.00 0.00 1.82
48 49 5.505489 GCCTCCAAACGCAAAATTCAAAATT 60.505 36.000 0.00 0.00 0.00 1.82
49 50 6.135400 CCTCCAAACGCAAAATTCAAAATTC 58.865 36.000 0.00 0.00 0.00 2.17
50 51 5.732288 TCCAAACGCAAAATTCAAAATTCG 58.268 33.333 0.00 0.00 0.00 3.34
51 52 5.292101 TCCAAACGCAAAATTCAAAATTCGT 59.708 32.000 0.00 0.00 0.00 3.85
52 53 6.475727 TCCAAACGCAAAATTCAAAATTCGTA 59.524 30.769 0.00 0.00 0.00 3.43
53 54 7.010183 TCCAAACGCAAAATTCAAAATTCGTAA 59.990 29.630 0.00 0.00 0.00 3.18
54 55 7.636359 CCAAACGCAAAATTCAAAATTCGTAAA 59.364 29.630 0.00 0.00 0.00 2.01
55 56 8.989767 CAAACGCAAAATTCAAAATTCGTAAAA 58.010 25.926 0.00 0.00 0.00 1.52
56 57 9.543018 AAACGCAAAATTCAAAATTCGTAAAAA 57.457 22.222 0.00 0.00 0.00 1.94
57 58 8.523147 ACGCAAAATTCAAAATTCGTAAAAAC 57.477 26.923 0.00 0.00 0.00 2.43
58 59 7.636745 ACGCAAAATTCAAAATTCGTAAAAACC 59.363 29.630 0.00 0.00 0.00 3.27
59 60 7.110903 CGCAAAATTCAAAATTCGTAAAAACCC 59.889 33.333 0.00 0.00 0.00 4.11
60 61 7.910683 GCAAAATTCAAAATTCGTAAAAACCCA 59.089 29.630 0.00 0.00 0.00 4.51
61 62 9.943163 CAAAATTCAAAATTCGTAAAAACCCAT 57.057 25.926 0.00 0.00 0.00 4.00
114 115 8.814038 AAAACAAAGATAGATGAAGGCATAGT 57.186 30.769 0.00 0.00 34.11 2.12
115 116 7.798596 AACAAAGATAGATGAAGGCATAGTG 57.201 36.000 0.00 0.00 34.11 2.74
116 117 5.762218 ACAAAGATAGATGAAGGCATAGTGC 59.238 40.000 0.00 0.00 44.08 4.40
138 139 5.176407 CACAAGTGTGTAAATTTTCGGGA 57.824 39.130 3.17 0.00 40.96 5.14
139 140 4.973663 CACAAGTGTGTAAATTTTCGGGAC 59.026 41.667 3.17 0.00 40.96 4.46
140 141 4.641094 ACAAGTGTGTAAATTTTCGGGACA 59.359 37.500 0.00 0.00 35.72 4.02
141 142 5.125739 ACAAGTGTGTAAATTTTCGGGACAA 59.874 36.000 0.00 0.00 35.72 3.18
142 143 5.838531 AGTGTGTAAATTTTCGGGACAAA 57.161 34.783 0.00 0.00 0.00 2.83
143 144 6.210287 AGTGTGTAAATTTTCGGGACAAAA 57.790 33.333 0.00 0.00 0.00 2.44
144 145 6.811954 AGTGTGTAAATTTTCGGGACAAAAT 58.188 32.000 0.00 0.00 37.53 1.82
145 146 7.942990 AGTGTGTAAATTTTCGGGACAAAATA 58.057 30.769 0.00 0.00 35.35 1.40
146 147 7.863877 AGTGTGTAAATTTTCGGGACAAAATAC 59.136 33.333 0.00 0.00 35.35 1.89
147 148 6.856938 TGTGTAAATTTTCGGGACAAAATACG 59.143 34.615 0.00 0.00 35.35 3.06
148 149 6.857451 GTGTAAATTTTCGGGACAAAATACGT 59.143 34.615 0.00 0.00 35.35 3.57
149 150 7.379262 GTGTAAATTTTCGGGACAAAATACGTT 59.621 33.333 0.00 0.00 35.35 3.99
150 151 6.996562 AAATTTTCGGGACAAAATACGTTC 57.003 33.333 0.00 0.00 35.35 3.95
151 152 5.692613 ATTTTCGGGACAAAATACGTTCA 57.307 34.783 0.00 0.00 34.77 3.18
152 153 5.496133 TTTTCGGGACAAAATACGTTCAA 57.504 34.783 0.00 0.00 0.00 2.69
153 154 5.496133 TTTCGGGACAAAATACGTTCAAA 57.504 34.783 0.00 0.00 0.00 2.69
154 155 5.692613 TTCGGGACAAAATACGTTCAAAT 57.307 34.783 0.00 0.00 0.00 2.32
155 156 5.037015 TCGGGACAAAATACGTTCAAATG 57.963 39.130 0.00 0.00 0.00 2.32
156 157 4.755629 TCGGGACAAAATACGTTCAAATGA 59.244 37.500 0.00 0.00 0.00 2.57
157 158 5.086058 CGGGACAAAATACGTTCAAATGAG 58.914 41.667 0.00 0.00 0.00 2.90
158 159 5.399013 GGGACAAAATACGTTCAAATGAGG 58.601 41.667 0.00 0.00 0.00 3.86
159 160 5.399013 GGACAAAATACGTTCAAATGAGGG 58.601 41.667 0.00 0.00 0.00 4.30
160 161 4.805219 ACAAAATACGTTCAAATGAGGGC 58.195 39.130 0.00 0.00 0.00 5.19
161 162 4.522789 ACAAAATACGTTCAAATGAGGGCT 59.477 37.500 0.00 0.00 0.00 5.19
162 163 4.701956 AAATACGTTCAAATGAGGGCTG 57.298 40.909 0.00 0.00 0.00 4.85
163 164 2.851263 TACGTTCAAATGAGGGCTGT 57.149 45.000 0.00 0.00 0.00 4.40
164 165 1.238439 ACGTTCAAATGAGGGCTGTG 58.762 50.000 0.00 0.00 0.00 3.66
165 166 0.109597 CGTTCAAATGAGGGCTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
166 167 0.961019 GTTCAAATGAGGGCTGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
167 168 1.340889 GTTCAAATGAGGGCTGTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
168 169 1.702182 TCAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
169 170 2.037901 TCAAATGAGGGCTGTGCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
170 171 2.433604 TCAAATGAGGGCTGTGCAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
194 195 9.891828 AAAAAGACAAATTTGGAGTTTTTGAAC 57.108 25.926 24.43 6.53 35.03 3.18
195 196 8.614469 AAAGACAAATTTGGAGTTTTTGAACA 57.386 26.923 21.74 0.00 35.03 3.18
196 197 7.595311 AGACAAATTTGGAGTTTTTGAACAC 57.405 32.000 21.74 0.00 35.03 3.32
197 198 7.158021 AGACAAATTTGGAGTTTTTGAACACA 58.842 30.769 21.74 0.00 35.03 3.72
198 199 7.823799 AGACAAATTTGGAGTTTTTGAACACAT 59.176 29.630 21.74 0.00 35.03 3.21
199 200 7.750769 ACAAATTTGGAGTTTTTGAACACATG 58.249 30.769 21.74 0.00 35.03 3.21
200 201 7.605691 ACAAATTTGGAGTTTTTGAACACATGA 59.394 29.630 21.74 0.00 35.03 3.07
201 202 8.614346 CAAATTTGGAGTTTTTGAACACATGAT 58.386 29.630 10.49 0.00 33.24 2.45
202 203 9.829507 AAATTTGGAGTTTTTGAACACATGATA 57.170 25.926 0.00 0.00 0.00 2.15
203 204 8.816640 ATTTGGAGTTTTTGAACACATGATAC 57.183 30.769 0.00 0.00 0.00 2.24
204 205 7.581213 TTGGAGTTTTTGAACACATGATACT 57.419 32.000 0.00 0.00 0.00 2.12
205 206 6.969366 TGGAGTTTTTGAACACATGATACTG 58.031 36.000 0.00 0.00 0.00 2.74
206 207 6.545666 TGGAGTTTTTGAACACATGATACTGT 59.454 34.615 0.00 0.00 0.00 3.55
207 208 7.068103 TGGAGTTTTTGAACACATGATACTGTT 59.932 33.333 0.00 0.00 33.19 3.16
208 209 8.564574 GGAGTTTTTGAACACATGATACTGTTA 58.435 33.333 0.00 0.00 30.59 2.41
209 210 9.944663 GAGTTTTTGAACACATGATACTGTTAA 57.055 29.630 0.00 0.00 30.59 2.01
212 213 9.906660 TTTTTGAACACATGATACTGTTAATCC 57.093 29.630 0.00 0.00 30.59 3.01
213 214 7.624360 TTGAACACATGATACTGTTAATCCC 57.376 36.000 0.00 0.00 30.59 3.85
214 215 6.119536 TGAACACATGATACTGTTAATCCCC 58.880 40.000 0.00 0.00 30.59 4.81
215 216 5.048846 ACACATGATACTGTTAATCCCCC 57.951 43.478 0.00 0.00 0.00 5.40
216 217 4.476846 ACACATGATACTGTTAATCCCCCA 59.523 41.667 0.00 0.00 0.00 4.96
217 218 5.065914 CACATGATACTGTTAATCCCCCAG 58.934 45.833 0.00 0.00 0.00 4.45
218 219 4.975147 ACATGATACTGTTAATCCCCCAGA 59.025 41.667 0.00 0.00 0.00 3.86
219 220 5.431731 ACATGATACTGTTAATCCCCCAGAA 59.568 40.000 0.00 0.00 0.00 3.02
220 221 5.367945 TGATACTGTTAATCCCCCAGAAC 57.632 43.478 0.00 0.00 0.00 3.01
221 222 4.785914 TGATACTGTTAATCCCCCAGAACA 59.214 41.667 0.00 0.00 0.00 3.18
222 223 3.434940 ACTGTTAATCCCCCAGAACAC 57.565 47.619 0.00 0.00 0.00 3.32
223 224 2.714250 ACTGTTAATCCCCCAGAACACA 59.286 45.455 0.00 0.00 0.00 3.72
224 225 3.139397 ACTGTTAATCCCCCAGAACACAA 59.861 43.478 0.00 0.00 0.00 3.33
225 226 4.148838 CTGTTAATCCCCCAGAACACAAA 58.851 43.478 0.00 0.00 0.00 2.83
226 227 4.746466 TGTTAATCCCCCAGAACACAAAT 58.254 39.130 0.00 0.00 0.00 2.32
227 228 5.151454 TGTTAATCCCCCAGAACACAAATT 58.849 37.500 0.00 0.00 0.00 1.82
228 229 5.604650 TGTTAATCCCCCAGAACACAAATTT 59.395 36.000 0.00 0.00 0.00 1.82
229 230 6.782988 TGTTAATCCCCCAGAACACAAATTTA 59.217 34.615 0.00 0.00 0.00 1.40
230 231 7.456269 TGTTAATCCCCCAGAACACAAATTTAT 59.544 33.333 0.00 0.00 0.00 1.40
231 232 6.544928 AATCCCCCAGAACACAAATTTATC 57.455 37.500 0.00 0.00 0.00 1.75
232 233 5.269554 TCCCCCAGAACACAAATTTATCT 57.730 39.130 0.00 0.00 0.00 1.98
233 234 5.650283 TCCCCCAGAACACAAATTTATCTT 58.350 37.500 0.00 0.00 0.00 2.40
234 235 6.081356 TCCCCCAGAACACAAATTTATCTTT 58.919 36.000 0.00 0.00 0.00 2.52
235 236 6.556874 TCCCCCAGAACACAAATTTATCTTTT 59.443 34.615 0.00 0.00 0.00 2.27
236 237 7.071824 TCCCCCAGAACACAAATTTATCTTTTT 59.928 33.333 0.00 0.00 0.00 1.94
254 255 3.377434 TTTTGTACGGATCGCATTTCG 57.623 42.857 0.00 0.00 40.15 3.46
289 290 9.607285 CATCCTAAAATTTTACATACATACGCC 57.393 33.333 6.54 0.00 0.00 5.68
290 291 8.967664 TCCTAAAATTTTACATACATACGCCT 57.032 30.769 6.54 0.00 0.00 5.52
291 292 9.048446 TCCTAAAATTTTACATACATACGCCTC 57.952 33.333 6.54 0.00 0.00 4.70
292 293 8.832521 CCTAAAATTTTACATACATACGCCTCA 58.167 33.333 6.54 0.00 0.00 3.86
293 294 9.646336 CTAAAATTTTACATACATACGCCTCAC 57.354 33.333 6.54 0.00 0.00 3.51
294 295 7.618502 AAATTTTACATACATACGCCTCACA 57.381 32.000 0.00 0.00 0.00 3.58
295 296 7.801716 AATTTTACATACATACGCCTCACAT 57.198 32.000 0.00 0.00 0.00 3.21
296 297 6.838198 TTTTACATACATACGCCTCACATC 57.162 37.500 0.00 0.00 0.00 3.06
297 298 3.386768 ACATACATACGCCTCACATCC 57.613 47.619 0.00 0.00 0.00 3.51
298 299 2.965831 ACATACATACGCCTCACATCCT 59.034 45.455 0.00 0.00 0.00 3.24
299 300 3.388024 ACATACATACGCCTCACATCCTT 59.612 43.478 0.00 0.00 0.00 3.36
300 301 2.315925 ACATACGCCTCACATCCTTG 57.684 50.000 0.00 0.00 0.00 3.61
301 302 1.555075 ACATACGCCTCACATCCTTGT 59.445 47.619 0.00 0.00 36.15 3.16
302 303 2.027192 ACATACGCCTCACATCCTTGTT 60.027 45.455 0.00 0.00 32.34 2.83
303 304 2.851263 TACGCCTCACATCCTTGTTT 57.149 45.000 0.00 0.00 32.34 2.83
304 305 2.851263 ACGCCTCACATCCTTGTTTA 57.149 45.000 0.00 0.00 32.34 2.01
305 306 3.350219 ACGCCTCACATCCTTGTTTAT 57.650 42.857 0.00 0.00 32.34 1.40
306 307 3.686016 ACGCCTCACATCCTTGTTTATT 58.314 40.909 0.00 0.00 32.34 1.40
307 308 4.079253 ACGCCTCACATCCTTGTTTATTT 58.921 39.130 0.00 0.00 32.34 1.40
308 309 4.082787 ACGCCTCACATCCTTGTTTATTTG 60.083 41.667 0.00 0.00 32.34 2.32
309 310 4.082787 CGCCTCACATCCTTGTTTATTTGT 60.083 41.667 0.00 0.00 32.34 2.83
310 311 5.123186 CGCCTCACATCCTTGTTTATTTGTA 59.877 40.000 0.00 0.00 32.34 2.41
311 312 6.322491 GCCTCACATCCTTGTTTATTTGTAC 58.678 40.000 0.00 0.00 32.34 2.90
312 313 6.625081 GCCTCACATCCTTGTTTATTTGTACC 60.625 42.308 0.00 0.00 32.34 3.34
313 314 6.432783 CCTCACATCCTTGTTTATTTGTACCA 59.567 38.462 0.00 0.00 32.34 3.25
314 315 7.040062 CCTCACATCCTTGTTTATTTGTACCAA 60.040 37.037 0.00 0.00 32.34 3.67
315 316 8.239038 TCACATCCTTGTTTATTTGTACCAAA 57.761 30.769 0.00 0.00 32.34 3.28
316 317 8.696374 TCACATCCTTGTTTATTTGTACCAAAA 58.304 29.630 0.00 0.00 32.34 2.44
317 318 9.319143 CACATCCTTGTTTATTTGTACCAAAAA 57.681 29.630 0.00 0.00 32.34 1.94
392 393 4.277552 CCTCCATGTAGGCCGAGA 57.722 61.111 0.00 0.00 37.29 4.04
393 394 2.045280 CCTCCATGTAGGCCGAGAG 58.955 63.158 0.00 0.00 37.29 3.20
394 395 1.365633 CTCCATGTAGGCCGAGAGC 59.634 63.158 0.00 0.00 42.60 4.09
403 404 4.103103 GCCGAGAGCCAAAACGCC 62.103 66.667 0.00 0.00 34.35 5.68
404 405 2.668212 CCGAGAGCCAAAACGCCA 60.668 61.111 0.00 0.00 0.00 5.69
405 406 2.040544 CCGAGAGCCAAAACGCCAT 61.041 57.895 0.00 0.00 0.00 4.40
406 407 1.586154 CCGAGAGCCAAAACGCCATT 61.586 55.000 0.00 0.00 0.00 3.16
407 408 0.179189 CGAGAGCCAAAACGCCATTC 60.179 55.000 0.00 0.00 0.00 2.67
408 409 1.168714 GAGAGCCAAAACGCCATTCT 58.831 50.000 0.00 0.00 0.00 2.40
409 410 1.131315 GAGAGCCAAAACGCCATTCTC 59.869 52.381 0.00 0.00 0.00 2.87
410 411 0.881118 GAGCCAAAACGCCATTCTCA 59.119 50.000 0.00 0.00 0.00 3.27
411 412 0.598065 AGCCAAAACGCCATTCTCAC 59.402 50.000 0.00 0.00 0.00 3.51
412 413 0.598065 GCCAAAACGCCATTCTCACT 59.402 50.000 0.00 0.00 0.00 3.41
413 414 1.000274 GCCAAAACGCCATTCTCACTT 60.000 47.619 0.00 0.00 0.00 3.16
414 415 2.545742 GCCAAAACGCCATTCTCACTTT 60.546 45.455 0.00 0.00 0.00 2.66
415 416 3.305064 GCCAAAACGCCATTCTCACTTTA 60.305 43.478 0.00 0.00 0.00 1.85
416 417 4.794655 GCCAAAACGCCATTCTCACTTTAA 60.795 41.667 0.00 0.00 0.00 1.52
417 418 4.917415 CCAAAACGCCATTCTCACTTTAAG 59.083 41.667 0.00 0.00 0.00 1.85
418 419 5.278266 CCAAAACGCCATTCTCACTTTAAGA 60.278 40.000 0.00 0.00 0.00 2.10
419 420 5.613358 AAACGCCATTCTCACTTTAAGAG 57.387 39.130 0.00 0.00 34.42 2.85
420 421 3.600388 ACGCCATTCTCACTTTAAGAGG 58.400 45.455 0.00 0.00 33.92 3.69
421 422 2.352960 CGCCATTCTCACTTTAAGAGGC 59.647 50.000 0.00 0.00 33.12 4.70
422 423 2.685388 GCCATTCTCACTTTAAGAGGCC 59.315 50.000 0.00 0.00 31.26 5.19
423 424 3.873801 GCCATTCTCACTTTAAGAGGCCA 60.874 47.826 5.01 0.00 31.26 5.36
424 425 4.335416 CCATTCTCACTTTAAGAGGCCAA 58.665 43.478 5.01 0.00 33.92 4.52
425 426 4.766891 CCATTCTCACTTTAAGAGGCCAAA 59.233 41.667 5.01 0.00 33.92 3.28
426 427 5.420104 CCATTCTCACTTTAAGAGGCCAAAT 59.580 40.000 5.01 0.00 33.92 2.32
427 428 6.071165 CCATTCTCACTTTAAGAGGCCAAATT 60.071 38.462 5.01 0.00 33.92 1.82
428 429 7.122650 CCATTCTCACTTTAAGAGGCCAAATTA 59.877 37.037 5.01 0.00 33.92 1.40
429 430 8.689972 CATTCTCACTTTAAGAGGCCAAATTAT 58.310 33.333 5.01 0.00 33.92 1.28
446 447 7.040961 GCCAAATTATAAGGCCAATCTACGTTA 60.041 37.037 5.01 0.00 42.58 3.18
455 456 4.142752 GGCCAATCTACGTTAAAAGACACC 60.143 45.833 0.00 0.00 0.00 4.16
456 457 4.142752 GCCAATCTACGTTAAAAGACACCC 60.143 45.833 0.00 0.00 0.00 4.61
463 464 3.310501 ACGTTAAAAGACACCCAAGTTCG 59.689 43.478 0.00 0.00 0.00 3.95
465 466 4.212636 CGTTAAAAGACACCCAAGTTCGAT 59.787 41.667 0.00 0.00 0.00 3.59
466 467 5.449304 GTTAAAAGACACCCAAGTTCGATG 58.551 41.667 0.00 0.00 0.00 3.84
467 468 3.485463 AAAGACACCCAAGTTCGATGA 57.515 42.857 0.00 0.00 0.00 2.92
468 469 3.703001 AAGACACCCAAGTTCGATGAT 57.297 42.857 0.00 0.00 0.00 2.45
469 470 4.819105 AAGACACCCAAGTTCGATGATA 57.181 40.909 0.00 0.00 0.00 2.15
470 471 4.392921 AGACACCCAAGTTCGATGATAG 57.607 45.455 0.00 0.00 0.00 2.08
508 622 7.688918 ATGAGGAAGAAGAAACTATCTGGAT 57.311 36.000 0.00 0.00 38.79 3.41
509 623 8.789767 ATGAGGAAGAAGAAACTATCTGGATA 57.210 34.615 0.00 0.00 38.79 2.59
510 624 8.789767 TGAGGAAGAAGAAACTATCTGGATAT 57.210 34.615 0.00 0.00 38.79 1.63
537 651 3.310860 GACACGGTGGCGGGAGAAT 62.311 63.158 13.48 0.00 0.00 2.40
546 663 4.286320 CGGGAGAATCGAGGGCGG 62.286 72.222 0.00 0.00 38.28 6.13
578 695 1.470996 TTGGGTTTGTGGATGCAGGC 61.471 55.000 0.00 0.00 0.00 4.85
579 696 1.907807 GGGTTTGTGGATGCAGGCA 60.908 57.895 0.00 0.00 0.00 4.75
580 697 1.470996 GGGTTTGTGGATGCAGGCAA 61.471 55.000 0.00 0.00 0.00 4.52
598 715 0.961753 AACAAGGCAAAGTAGGCAGC 59.038 50.000 0.00 0.00 36.37 5.25
707 824 3.381335 CAGCCTACCTTCCCCTTTAGTA 58.619 50.000 0.00 0.00 0.00 1.82
708 825 3.974642 CAGCCTACCTTCCCCTTTAGTAT 59.025 47.826 0.00 0.00 0.00 2.12
709 826 5.152934 CAGCCTACCTTCCCCTTTAGTATA 58.847 45.833 0.00 0.00 0.00 1.47
711 828 5.102739 AGCCTACCTTCCCCTTTAGTATACT 60.103 44.000 10.87 10.87 0.00 2.12
712 829 6.105289 AGCCTACCTTCCCCTTTAGTATACTA 59.895 42.308 8.59 8.59 0.00 1.82
713 830 6.436847 GCCTACCTTCCCCTTTAGTATACTAG 59.563 46.154 12.28 4.38 0.00 2.57
714 831 7.533967 CCTACCTTCCCCTTTAGTATACTAGT 58.466 42.308 12.28 0.00 0.00 2.57
715 832 8.673251 CCTACCTTCCCCTTTAGTATACTAGTA 58.327 40.741 12.28 4.77 0.00 1.82
716 833 9.737844 CTACCTTCCCCTTTAGTATACTAGTAG 57.262 40.741 12.28 12.92 0.00 2.57
838 967 1.156736 CACGGCGAGAAAAATCCACT 58.843 50.000 16.62 0.00 0.00 4.00
839 968 1.128692 CACGGCGAGAAAAATCCACTC 59.871 52.381 16.62 0.00 0.00 3.51
932 1063 5.422650 TCATCATCATCCATCATCCTCTCTC 59.577 44.000 0.00 0.00 0.00 3.20
933 1064 4.095211 TCATCATCCATCATCCTCTCTCC 58.905 47.826 0.00 0.00 0.00 3.71
940 1071 3.438372 CCATCATCCTCTCTCCCTCTCTT 60.438 52.174 0.00 0.00 0.00 2.85
941 1072 4.225573 CATCATCCTCTCTCCCTCTCTTT 58.774 47.826 0.00 0.00 0.00 2.52
943 1074 3.531397 TCATCCTCTCTCCCTCTCTTTCT 59.469 47.826 0.00 0.00 0.00 2.52
944 1075 3.662759 TCCTCTCTCCCTCTCTTTCTC 57.337 52.381 0.00 0.00 0.00 2.87
945 1076 3.197983 TCCTCTCTCCCTCTCTTTCTCT 58.802 50.000 0.00 0.00 0.00 3.10
946 1077 3.202151 TCCTCTCTCCCTCTCTTTCTCTC 59.798 52.174 0.00 0.00 0.00 3.20
947 1078 3.555966 CTCTCTCCCTCTCTTTCTCTCC 58.444 54.545 0.00 0.00 0.00 3.71
987 1121 1.283347 TCCCAAGAGAGCAAGCAGAT 58.717 50.000 0.00 0.00 0.00 2.90
994 1128 0.831966 AGAGCAAGCAGATGAGAGGG 59.168 55.000 0.00 0.00 0.00 4.30
999 1133 3.474570 GCAGATGAGAGGGGCCGT 61.475 66.667 0.00 0.00 0.00 5.68
1008 1142 3.698289 TGAGAGGGGCCGTCTATATAAG 58.302 50.000 27.42 0.00 0.00 1.73
1317 1480 2.427410 CAAGCGCGGCAACTTCAC 60.427 61.111 8.83 0.00 0.00 3.18
1526 1689 2.663196 CCACCACCGTCTCCTTCC 59.337 66.667 0.00 0.00 0.00 3.46
1537 1700 1.045350 TCTCCTTCCTCCATCCTGCG 61.045 60.000 0.00 0.00 0.00 5.18
1624 1790 2.516460 CTCTGCATCAGCCTGCCC 60.516 66.667 0.00 0.00 41.58 5.36
1744 1910 0.752054 GCATCCTGAGAGTGAGAGGG 59.248 60.000 0.00 0.00 0.00 4.30
1817 1983 1.813192 CTCGACTTCAGAGGCCTCC 59.187 63.158 29.54 11.70 32.38 4.30
1818 1984 1.999071 CTCGACTTCAGAGGCCTCCG 61.999 65.000 29.54 22.82 32.38 4.63
1830 1996 2.569404 GAGGCCTCCGGATGAAATAGAT 59.431 50.000 23.19 0.00 0.00 1.98
1831 1997 2.304180 AGGCCTCCGGATGAAATAGATG 59.696 50.000 11.34 0.00 0.00 2.90
1832 1998 2.303022 GGCCTCCGGATGAAATAGATGA 59.697 50.000 11.34 0.00 0.00 2.92
1835 2001 4.214332 GCCTCCGGATGAAATAGATGAAAC 59.786 45.833 11.34 0.00 0.00 2.78
1838 2004 7.217200 CCTCCGGATGAAATAGATGAAACTTA 58.783 38.462 3.57 0.00 0.00 2.24
1889 2055 3.230134 TGCTGTAAATTGTTGCTCCCTT 58.770 40.909 0.00 0.00 0.00 3.95
1890 2056 3.255642 TGCTGTAAATTGTTGCTCCCTTC 59.744 43.478 0.00 0.00 0.00 3.46
1891 2057 3.507622 GCTGTAAATTGTTGCTCCCTTCT 59.492 43.478 0.00 0.00 0.00 2.85
1892 2058 4.700213 GCTGTAAATTGTTGCTCCCTTCTA 59.300 41.667 0.00 0.00 0.00 2.10
2048 2222 9.542462 TCATGTAAATTATTACTACTGCTCCAC 57.458 33.333 0.00 0.00 41.65 4.02
2049 2223 8.774586 CATGTAAATTATTACTACTGCTCCACC 58.225 37.037 1.02 0.00 41.65 4.61
2050 2224 6.982141 TGTAAATTATTACTACTGCTCCACCG 59.018 38.462 1.02 0.00 41.65 4.94
2051 2225 5.864418 AATTATTACTACTGCTCCACCGA 57.136 39.130 0.00 0.00 0.00 4.69
2052 2226 6.420913 AATTATTACTACTGCTCCACCGAT 57.579 37.500 0.00 0.00 0.00 4.18
2053 2227 3.735237 ATTACTACTGCTCCACCGATG 57.265 47.619 0.00 0.00 0.00 3.84
2054 2228 2.430248 TACTACTGCTCCACCGATGA 57.570 50.000 0.00 0.00 0.00 2.92
2055 2229 1.557099 ACTACTGCTCCACCGATGAA 58.443 50.000 0.00 0.00 0.00 2.57
2059 2233 1.019673 CTGCTCCACCGATGAAATGG 58.980 55.000 0.00 0.00 34.58 3.16
2119 2299 2.369394 GTTTCCCATGGTCTCATGTCC 58.631 52.381 11.73 0.00 46.96 4.02
2120 2300 0.918983 TTCCCATGGTCTCATGTCCC 59.081 55.000 11.73 0.00 46.96 4.46
2145 2325 3.652869 TGAACATCTCCTCAAACTTCCCT 59.347 43.478 0.00 0.00 0.00 4.20
2162 2342 3.248024 TCCCTAGAAGAGAAGTGGCAAA 58.752 45.455 0.00 0.00 0.00 3.68
2178 2358 2.482142 GGCAAATGAAACACGTCCCAAA 60.482 45.455 0.00 0.00 0.00 3.28
2184 2364 3.082548 TGAAACACGTCCCAAACAAGAA 58.917 40.909 0.00 0.00 0.00 2.52
2189 2369 4.647611 ACACGTCCCAAACAAGAATATGA 58.352 39.130 0.00 0.00 0.00 2.15
2211 2391 6.387465 TGAAAATGAGTACTAGACCTTGTCG 58.613 40.000 0.00 0.00 37.67 4.35
2219 2399 6.237154 AGTACTAGACCTTGTCGTTAGTTCT 58.763 40.000 0.00 1.36 37.67 3.01
2220 2400 5.625921 ACTAGACCTTGTCGTTAGTTCTC 57.374 43.478 0.00 0.00 37.67 2.87
2221 2401 5.068636 ACTAGACCTTGTCGTTAGTTCTCA 58.931 41.667 0.00 0.00 37.67 3.27
2222 2402 4.240175 AGACCTTGTCGTTAGTTCTCAC 57.760 45.455 0.00 0.00 37.67 3.51
2233 2425 9.622004 TGTCGTTAGTTCTCACTTCTAAAATAG 57.378 33.333 0.00 0.00 34.06 1.73
2234 2426 9.837525 GTCGTTAGTTCTCACTTCTAAAATAGA 57.162 33.333 0.00 0.00 34.06 1.98
2236 2428 8.800031 CGTTAGTTCTCACTTCTAAAATAGAGC 58.200 37.037 0.00 0.00 35.96 4.09
2237 2429 9.640963 GTTAGTTCTCACTTCTAAAATAGAGCA 57.359 33.333 0.00 0.00 35.96 4.26
2238 2430 9.862371 TTAGTTCTCACTTCTAAAATAGAGCAG 57.138 33.333 0.00 0.00 35.96 4.24
2239 2431 7.902087 AGTTCTCACTTCTAAAATAGAGCAGT 58.098 34.615 0.00 0.00 35.96 4.40
2241 2433 8.994170 GTTCTCACTTCTAAAATAGAGCAGTTT 58.006 33.333 0.00 0.00 35.96 2.66
2242 2434 9.561069 TTCTCACTTCTAAAATAGAGCAGTTTT 57.439 29.630 0.00 0.00 35.96 2.43
2253 2466 6.759497 ATAGAGCAGTTTTAACATGGTTCC 57.241 37.500 0.00 0.00 0.00 3.62
2255 2468 4.520492 AGAGCAGTTTTAACATGGTTCCAG 59.480 41.667 0.00 0.00 0.00 3.86
2314 2532 1.598701 GGTGCAGATTGGTTGGAGCC 61.599 60.000 0.00 0.00 0.00 4.70
2315 2533 0.895100 GTGCAGATTGGTTGGAGCCA 60.895 55.000 0.00 0.00 36.62 4.75
2316 2534 0.895100 TGCAGATTGGTTGGAGCCAC 60.895 55.000 0.00 0.00 38.42 5.01
2372 2590 0.947180 TGCTTTCGTACGTCTTGCCC 60.947 55.000 16.05 0.00 0.00 5.36
2373 2591 0.669625 GCTTTCGTACGTCTTGCCCT 60.670 55.000 16.05 0.00 0.00 5.19
2374 2592 1.068474 CTTTCGTACGTCTTGCCCTG 58.932 55.000 16.05 0.00 0.00 4.45
2375 2593 0.390124 TTTCGTACGTCTTGCCCTGT 59.610 50.000 16.05 0.00 0.00 4.00
2376 2594 0.390124 TTCGTACGTCTTGCCCTGTT 59.610 50.000 16.05 0.00 0.00 3.16
2453 2672 4.052518 AAAGCAGCGGCCATCCCT 62.053 61.111 4.82 0.00 42.56 4.20
2462 2681 1.749258 GGCCATCCCTCGTTTGGTC 60.749 63.158 0.00 0.00 32.90 4.02
2473 2692 1.868498 TCGTTTGGTCGTTGTTGGATC 59.132 47.619 0.00 0.00 0.00 3.36
2497 2716 1.042559 CGGATTGGATTGGGGTTGGG 61.043 60.000 0.00 0.00 0.00 4.12
2514 2733 4.999939 GGGCGCCGCTTTGTGTTG 63.000 66.667 22.54 0.00 0.00 3.33
2515 2734 4.264638 GGCGCCGCTTTGTGTTGT 62.265 61.111 12.58 0.00 0.00 3.32
2516 2735 3.024043 GCGCCGCTTTGTGTTGTG 61.024 61.111 0.00 0.00 0.00 3.33
2517 2736 2.407210 CGCCGCTTTGTGTTGTGT 59.593 55.556 0.00 0.00 0.00 3.72
2518 2737 1.226547 CGCCGCTTTGTGTTGTGTT 60.227 52.632 0.00 0.00 0.00 3.32
2519 2738 1.470699 CGCCGCTTTGTGTTGTGTTG 61.471 55.000 0.00 0.00 0.00 3.33
2520 2739 0.457681 GCCGCTTTGTGTTGTGTTGT 60.458 50.000 0.00 0.00 0.00 3.32
2521 2740 1.267365 CCGCTTTGTGTTGTGTTGTG 58.733 50.000 0.00 0.00 0.00 3.33
2522 2741 1.402194 CCGCTTTGTGTTGTGTTGTGT 60.402 47.619 0.00 0.00 0.00 3.72
2523 2742 2.323959 CGCTTTGTGTTGTGTTGTGTT 58.676 42.857 0.00 0.00 0.00 3.32
2598 2826 4.500887 CGGACCAGTCTGAAAAGACTAACA 60.501 45.833 8.01 0.00 46.34 2.41
2615 2843 5.853936 ACTAACAAAAAGGCTGAATTTCCC 58.146 37.500 0.00 0.00 0.00 3.97
2619 2847 4.165950 ACAAAAAGGCTGAATTTCCCCTTT 59.834 37.500 18.30 18.30 46.57 3.11
2648 2876 7.758613 TTCTTTTTACAACGAAAATGGAACC 57.241 32.000 0.00 0.00 0.00 3.62
2649 2877 7.102847 TCTTTTTACAACGAAAATGGAACCT 57.897 32.000 0.00 0.00 0.00 3.50
2650 2878 6.975772 TCTTTTTACAACGAAAATGGAACCTG 59.024 34.615 0.00 0.00 0.00 4.00
2655 2883 5.106442 ACAACGAAAATGGAACCTGTTTTC 58.894 37.500 16.83 16.83 38.07 2.29
2660 2888 5.472137 CGAAAATGGAACCTGTTTTCCTAGA 59.528 40.000 18.91 0.00 44.89 2.43
2661 2889 6.151144 CGAAAATGGAACCTGTTTTCCTAGAT 59.849 38.462 18.91 0.00 44.89 1.98
2701 2929 7.227156 AGAAATGGACCGATTTCTTAGCATAT 58.773 34.615 18.56 3.59 46.14 1.78
2702 2930 8.375506 AGAAATGGACCGATTTCTTAGCATATA 58.624 33.333 18.56 0.00 46.14 0.86
2703 2931 7.907214 AATGGACCGATTTCTTAGCATATAC 57.093 36.000 0.00 0.00 0.00 1.47
2704 2932 6.665992 TGGACCGATTTCTTAGCATATACT 57.334 37.500 0.00 0.00 0.00 2.12
2705 2933 7.770366 TGGACCGATTTCTTAGCATATACTA 57.230 36.000 0.00 0.00 0.00 1.82
2706 2934 7.600065 TGGACCGATTTCTTAGCATATACTAC 58.400 38.462 0.00 0.00 0.00 2.73
2707 2935 7.450634 TGGACCGATTTCTTAGCATATACTACT 59.549 37.037 0.00 0.00 0.00 2.57
2708 2936 7.755822 GGACCGATTTCTTAGCATATACTACTG 59.244 40.741 0.00 0.00 0.00 2.74
2769 3000 2.308866 ACAAATGGACTCCGAAATCCCT 59.691 45.455 0.00 0.00 33.69 4.20
2776 3007 0.249238 CTCCGAAATCCCTGCTCTCG 60.249 60.000 0.00 0.00 0.00 4.04
2827 3058 3.050275 GCCGTGGAAGGTGCAGAC 61.050 66.667 0.00 0.00 0.00 3.51
2841 3072 4.320456 AGACCGCCTGTGCACCAG 62.320 66.667 15.69 11.53 41.15 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.833630 CATAGAGCTCACCCTCCACAA 59.166 52.381 17.77 0.00 32.17 3.33
1 2 1.489481 CATAGAGCTCACCCTCCACA 58.511 55.000 17.77 0.00 32.17 4.17
2 3 0.755686 CCATAGAGCTCACCCTCCAC 59.244 60.000 17.77 0.00 32.17 4.02
3 4 0.636647 TCCATAGAGCTCACCCTCCA 59.363 55.000 17.77 0.00 32.17 3.86
4 5 1.337118 CTCCATAGAGCTCACCCTCC 58.663 60.000 17.77 0.00 32.13 4.30
5 6 1.337118 CCTCCATAGAGCTCACCCTC 58.663 60.000 17.77 0.00 38.96 4.30
6 7 0.762461 GCCTCCATAGAGCTCACCCT 60.762 60.000 17.77 0.00 38.96 4.34
7 8 1.751563 GCCTCCATAGAGCTCACCC 59.248 63.158 17.77 0.00 38.96 4.61
8 9 0.762461 AGGCCTCCATAGAGCTCACC 60.762 60.000 17.77 3.93 38.96 4.02
9 10 0.678950 GAGGCCTCCATAGAGCTCAC 59.321 60.000 23.19 0.00 38.96 3.51
10 11 3.139810 GAGGCCTCCATAGAGCTCA 57.860 57.895 23.19 2.09 38.96 4.26
21 22 0.603065 ATTTTGCGTTTGGAGGCCTC 59.397 50.000 25.59 25.59 35.85 4.70
22 23 1.000843 GAATTTTGCGTTTGGAGGCCT 59.999 47.619 3.86 3.86 35.85 5.19
23 24 1.270041 TGAATTTTGCGTTTGGAGGCC 60.270 47.619 0.00 0.00 35.85 5.19
24 25 2.147436 TGAATTTTGCGTTTGGAGGC 57.853 45.000 0.00 0.00 37.19 4.70
25 26 5.671742 ATTTTGAATTTTGCGTTTGGAGG 57.328 34.783 0.00 0.00 0.00 4.30
26 27 5.840267 CGAATTTTGAATTTTGCGTTTGGAG 59.160 36.000 0.00 0.00 0.00 3.86
27 28 5.292101 ACGAATTTTGAATTTTGCGTTTGGA 59.708 32.000 0.00 0.00 0.00 3.53
28 29 5.497273 ACGAATTTTGAATTTTGCGTTTGG 58.503 33.333 0.00 0.00 0.00 3.28
29 30 8.521829 TTTACGAATTTTGAATTTTGCGTTTG 57.478 26.923 0.00 0.00 32.62 2.93
30 31 9.543018 TTTTTACGAATTTTGAATTTTGCGTTT 57.457 22.222 0.00 0.00 32.62 3.60
31 32 8.990788 GTTTTTACGAATTTTGAATTTTGCGTT 58.009 25.926 0.00 0.00 32.62 4.84
32 33 7.636745 GGTTTTTACGAATTTTGAATTTTGCGT 59.363 29.630 0.00 0.00 34.86 5.24
33 34 7.110903 GGGTTTTTACGAATTTTGAATTTTGCG 59.889 33.333 0.00 0.00 0.00 4.85
34 35 7.910683 TGGGTTTTTACGAATTTTGAATTTTGC 59.089 29.630 0.00 0.00 0.00 3.68
35 36 9.943163 ATGGGTTTTTACGAATTTTGAATTTTG 57.057 25.926 0.00 0.00 0.00 2.44
88 89 9.247861 ACTATGCCTTCATCTATCTTTGTTTTT 57.752 29.630 0.00 0.00 34.22 1.94
89 90 8.680903 CACTATGCCTTCATCTATCTTTGTTTT 58.319 33.333 0.00 0.00 34.22 2.43
90 91 7.201767 GCACTATGCCTTCATCTATCTTTGTTT 60.202 37.037 0.00 0.00 37.42 2.83
91 92 6.261826 GCACTATGCCTTCATCTATCTTTGTT 59.738 38.462 0.00 0.00 37.42 2.83
92 93 5.762218 GCACTATGCCTTCATCTATCTTTGT 59.238 40.000 0.00 0.00 37.42 2.83
93 94 5.761726 TGCACTATGCCTTCATCTATCTTTG 59.238 40.000 0.00 0.00 44.23 2.77
94 95 5.762218 GTGCACTATGCCTTCATCTATCTTT 59.238 40.000 10.32 0.00 44.23 2.52
95 96 5.163269 TGTGCACTATGCCTTCATCTATCTT 60.163 40.000 19.41 0.00 44.23 2.40
96 97 4.346127 TGTGCACTATGCCTTCATCTATCT 59.654 41.667 19.41 0.00 44.23 1.98
97 98 4.635223 TGTGCACTATGCCTTCATCTATC 58.365 43.478 19.41 0.00 44.23 2.08
98 99 4.694760 TGTGCACTATGCCTTCATCTAT 57.305 40.909 19.41 0.00 44.23 1.98
99 100 4.080919 ACTTGTGCACTATGCCTTCATCTA 60.081 41.667 19.41 0.00 44.23 1.98
100 101 3.276857 CTTGTGCACTATGCCTTCATCT 58.723 45.455 19.41 0.00 44.23 2.90
101 102 3.012518 ACTTGTGCACTATGCCTTCATC 58.987 45.455 19.41 0.00 44.23 2.92
102 103 2.751259 CACTTGTGCACTATGCCTTCAT 59.249 45.455 19.41 0.00 44.23 2.57
103 104 2.153645 CACTTGTGCACTATGCCTTCA 58.846 47.619 19.41 0.00 44.23 3.02
104 105 2.095567 CACACTTGTGCACTATGCCTTC 60.096 50.000 19.41 0.00 44.23 3.46
105 106 1.881973 CACACTTGTGCACTATGCCTT 59.118 47.619 19.41 0.00 44.23 4.35
106 107 1.527034 CACACTTGTGCACTATGCCT 58.473 50.000 19.41 0.00 44.23 4.75
117 118 4.641094 TGTCCCGAAAATTTACACACTTGT 59.359 37.500 0.00 0.00 40.02 3.16
118 119 5.176407 TGTCCCGAAAATTTACACACTTG 57.824 39.130 0.00 0.00 0.00 3.16
119 120 5.838531 TTGTCCCGAAAATTTACACACTT 57.161 34.783 0.00 0.00 0.00 3.16
120 121 5.838531 TTTGTCCCGAAAATTTACACACT 57.161 34.783 0.00 0.00 0.00 3.55
121 122 7.149096 CGTATTTTGTCCCGAAAATTTACACAC 60.149 37.037 0.00 0.00 36.94 3.82
122 123 6.856938 CGTATTTTGTCCCGAAAATTTACACA 59.143 34.615 0.00 0.00 36.94 3.72
123 124 6.857451 ACGTATTTTGTCCCGAAAATTTACAC 59.143 34.615 0.00 0.00 36.94 2.90
124 125 6.968250 ACGTATTTTGTCCCGAAAATTTACA 58.032 32.000 0.00 0.00 36.94 2.41
125 126 7.590689 TGAACGTATTTTGTCCCGAAAATTTAC 59.409 33.333 0.00 0.00 36.94 2.01
126 127 7.646314 TGAACGTATTTTGTCCCGAAAATTTA 58.354 30.769 0.00 0.00 36.94 1.40
127 128 6.505272 TGAACGTATTTTGTCCCGAAAATTT 58.495 32.000 0.00 0.00 36.94 1.82
128 129 6.074544 TGAACGTATTTTGTCCCGAAAATT 57.925 33.333 0.00 0.00 36.94 1.82
129 130 5.692613 TGAACGTATTTTGTCCCGAAAAT 57.307 34.783 0.00 0.00 38.69 1.82
130 131 5.496133 TTGAACGTATTTTGTCCCGAAAA 57.504 34.783 0.00 0.00 0.00 2.29
131 132 5.496133 TTTGAACGTATTTTGTCCCGAAA 57.504 34.783 0.00 0.00 0.00 3.46
132 133 5.238868 TCATTTGAACGTATTTTGTCCCGAA 59.761 36.000 0.00 0.00 0.00 4.30
133 134 4.755629 TCATTTGAACGTATTTTGTCCCGA 59.244 37.500 0.00 0.00 0.00 5.14
134 135 5.037015 TCATTTGAACGTATTTTGTCCCG 57.963 39.130 0.00 0.00 0.00 5.14
135 136 5.399013 CCTCATTTGAACGTATTTTGTCCC 58.601 41.667 0.00 0.00 0.00 4.46
136 137 5.399013 CCCTCATTTGAACGTATTTTGTCC 58.601 41.667 0.00 0.00 0.00 4.02
137 138 4.857037 GCCCTCATTTGAACGTATTTTGTC 59.143 41.667 0.00 0.00 0.00 3.18
138 139 4.522789 AGCCCTCATTTGAACGTATTTTGT 59.477 37.500 0.00 0.00 0.00 2.83
139 140 4.858692 CAGCCCTCATTTGAACGTATTTTG 59.141 41.667 0.00 0.00 0.00 2.44
140 141 4.522789 ACAGCCCTCATTTGAACGTATTTT 59.477 37.500 0.00 0.00 0.00 1.82
141 142 4.079253 ACAGCCCTCATTTGAACGTATTT 58.921 39.130 0.00 0.00 0.00 1.40
142 143 3.440173 CACAGCCCTCATTTGAACGTATT 59.560 43.478 0.00 0.00 0.00 1.89
143 144 3.009723 CACAGCCCTCATTTGAACGTAT 58.990 45.455 0.00 0.00 0.00 3.06
144 145 2.422597 CACAGCCCTCATTTGAACGTA 58.577 47.619 0.00 0.00 0.00 3.57
145 146 1.238439 CACAGCCCTCATTTGAACGT 58.762 50.000 0.00 0.00 0.00 3.99
146 147 0.109597 GCACAGCCCTCATTTGAACG 60.110 55.000 0.00 0.00 0.00 3.95
147 148 0.961019 TGCACAGCCCTCATTTGAAC 59.039 50.000 0.00 0.00 0.00 3.18
148 149 1.702182 TTGCACAGCCCTCATTTGAA 58.298 45.000 0.00 0.00 0.00 2.69
149 150 1.702182 TTTGCACAGCCCTCATTTGA 58.298 45.000 0.00 0.00 0.00 2.69
150 151 2.529780 TTTTGCACAGCCCTCATTTG 57.470 45.000 0.00 0.00 0.00 2.32
168 169 9.891828 GTTCAAAAACTCCAAATTTGTCTTTTT 57.108 25.926 16.73 16.79 35.92 1.94
169 170 9.061435 TGTTCAAAAACTCCAAATTTGTCTTTT 57.939 25.926 16.73 12.71 35.92 2.27
170 171 8.503196 GTGTTCAAAAACTCCAAATTTGTCTTT 58.497 29.630 16.73 7.98 35.92 2.52
171 172 7.659390 TGTGTTCAAAAACTCCAAATTTGTCTT 59.341 29.630 16.73 2.44 35.92 3.01
172 173 7.158021 TGTGTTCAAAAACTCCAAATTTGTCT 58.842 30.769 16.73 0.00 35.92 3.41
173 174 7.357951 TGTGTTCAAAAACTCCAAATTTGTC 57.642 32.000 16.73 0.00 35.92 3.18
174 175 7.605691 TCATGTGTTCAAAAACTCCAAATTTGT 59.394 29.630 16.73 0.00 35.92 2.83
175 176 7.972527 TCATGTGTTCAAAAACTCCAAATTTG 58.027 30.769 11.40 11.40 36.30 2.32
176 177 8.735692 ATCATGTGTTCAAAAACTCCAAATTT 57.264 26.923 0.00 0.00 36.30 1.82
177 178 9.260002 GTATCATGTGTTCAAAAACTCCAAATT 57.740 29.630 0.00 0.00 36.30 1.82
178 179 8.641541 AGTATCATGTGTTCAAAAACTCCAAAT 58.358 29.630 0.00 0.00 36.30 2.32
179 180 7.920151 CAGTATCATGTGTTCAAAAACTCCAAA 59.080 33.333 0.00 0.00 36.30 3.28
180 181 7.068103 ACAGTATCATGTGTTCAAAAACTCCAA 59.932 33.333 0.00 0.00 36.30 3.53
181 182 6.545666 ACAGTATCATGTGTTCAAAAACTCCA 59.454 34.615 0.00 0.00 36.30 3.86
182 183 6.970484 ACAGTATCATGTGTTCAAAAACTCC 58.030 36.000 0.00 0.00 36.30 3.85
183 184 9.944663 TTAACAGTATCATGTGTTCAAAAACTC 57.055 29.630 2.95 0.00 37.96 3.01
186 187 9.906660 GGATTAACAGTATCATGTGTTCAAAAA 57.093 29.630 2.95 0.00 37.96 1.94
187 188 8.519526 GGGATTAACAGTATCATGTGTTCAAAA 58.480 33.333 2.95 0.00 37.96 2.44
188 189 7.122055 GGGGATTAACAGTATCATGTGTTCAAA 59.878 37.037 2.95 0.00 37.96 2.69
189 190 6.601613 GGGGATTAACAGTATCATGTGTTCAA 59.398 38.462 2.95 0.00 37.96 2.69
190 191 6.119536 GGGGATTAACAGTATCATGTGTTCA 58.880 40.000 2.95 0.00 37.96 3.18
191 192 5.531287 GGGGGATTAACAGTATCATGTGTTC 59.469 44.000 2.95 0.00 37.96 3.18
192 193 5.044476 TGGGGGATTAACAGTATCATGTGTT 60.044 40.000 4.98 4.98 40.08 3.32
193 194 4.476846 TGGGGGATTAACAGTATCATGTGT 59.523 41.667 0.00 0.00 32.52 3.72
194 195 5.047566 TGGGGGATTAACAGTATCATGTG 57.952 43.478 0.00 0.00 32.52 3.21
195 196 4.975147 TCTGGGGGATTAACAGTATCATGT 59.025 41.667 0.00 0.00 34.02 3.21
196 197 5.567037 TCTGGGGGATTAACAGTATCATG 57.433 43.478 0.00 0.00 34.02 3.07
197 198 5.431731 TGTTCTGGGGGATTAACAGTATCAT 59.568 40.000 0.00 0.00 34.02 2.45
198 199 4.785914 TGTTCTGGGGGATTAACAGTATCA 59.214 41.667 0.00 0.00 34.02 2.15
199 200 5.123936 GTGTTCTGGGGGATTAACAGTATC 58.876 45.833 0.00 0.00 32.83 2.24
200 201 4.538490 TGTGTTCTGGGGGATTAACAGTAT 59.462 41.667 0.00 0.00 32.83 2.12
201 202 3.911260 TGTGTTCTGGGGGATTAACAGTA 59.089 43.478 0.00 0.00 32.83 2.74
202 203 2.714250 TGTGTTCTGGGGGATTAACAGT 59.286 45.455 0.00 0.00 32.83 3.55
203 204 3.433306 TGTGTTCTGGGGGATTAACAG 57.567 47.619 0.00 0.00 32.83 3.16
204 205 3.885976 TTGTGTTCTGGGGGATTAACA 57.114 42.857 0.00 0.00 0.00 2.41
205 206 5.738619 AATTTGTGTTCTGGGGGATTAAC 57.261 39.130 0.00 0.00 0.00 2.01
206 207 7.898636 AGATAAATTTGTGTTCTGGGGGATTAA 59.101 33.333 0.00 0.00 0.00 1.40
207 208 7.418378 AGATAAATTTGTGTTCTGGGGGATTA 58.582 34.615 0.00 0.00 0.00 1.75
208 209 6.263754 AGATAAATTTGTGTTCTGGGGGATT 58.736 36.000 0.00 0.00 0.00 3.01
209 210 5.842339 AGATAAATTTGTGTTCTGGGGGAT 58.158 37.500 0.00 0.00 0.00 3.85
210 211 5.269554 AGATAAATTTGTGTTCTGGGGGA 57.730 39.130 0.00 0.00 0.00 4.81
211 212 6.358974 AAAGATAAATTTGTGTTCTGGGGG 57.641 37.500 0.00 0.00 0.00 5.40
233 234 3.432592 TCGAAATGCGATCCGTACAAAAA 59.567 39.130 0.00 0.00 45.59 1.94
234 235 2.994578 TCGAAATGCGATCCGTACAAAA 59.005 40.909 0.00 0.00 45.59 2.44
235 236 2.608268 TCGAAATGCGATCCGTACAAA 58.392 42.857 0.00 0.00 45.59 2.83
236 237 2.281140 TCGAAATGCGATCCGTACAA 57.719 45.000 0.00 0.00 45.59 2.41
263 264 9.607285 GGCGTATGTATGTAAAATTTTAGGATG 57.393 33.333 10.92 0.02 0.00 3.51
264 265 9.569122 AGGCGTATGTATGTAAAATTTTAGGAT 57.431 29.630 10.92 8.76 0.00 3.24
265 266 8.967664 AGGCGTATGTATGTAAAATTTTAGGA 57.032 30.769 10.92 1.88 0.00 2.94
266 267 8.832521 TGAGGCGTATGTATGTAAAATTTTAGG 58.167 33.333 10.92 0.00 0.00 2.69
267 268 9.646336 GTGAGGCGTATGTATGTAAAATTTTAG 57.354 33.333 10.92 0.00 0.00 1.85
268 269 9.163899 TGTGAGGCGTATGTATGTAAAATTTTA 57.836 29.630 6.54 6.54 0.00 1.52
269 270 8.046294 TGTGAGGCGTATGTATGTAAAATTTT 57.954 30.769 8.75 8.75 0.00 1.82
270 271 7.618502 TGTGAGGCGTATGTATGTAAAATTT 57.381 32.000 0.00 0.00 0.00 1.82
271 272 7.041372 GGATGTGAGGCGTATGTATGTAAAATT 60.041 37.037 0.00 0.00 0.00 1.82
272 273 6.426937 GGATGTGAGGCGTATGTATGTAAAAT 59.573 38.462 0.00 0.00 0.00 1.82
273 274 5.756347 GGATGTGAGGCGTATGTATGTAAAA 59.244 40.000 0.00 0.00 0.00 1.52
274 275 5.069914 AGGATGTGAGGCGTATGTATGTAAA 59.930 40.000 0.00 0.00 0.00 2.01
275 276 4.587262 AGGATGTGAGGCGTATGTATGTAA 59.413 41.667 0.00 0.00 0.00 2.41
276 277 4.149598 AGGATGTGAGGCGTATGTATGTA 58.850 43.478 0.00 0.00 0.00 2.29
277 278 2.965831 AGGATGTGAGGCGTATGTATGT 59.034 45.455 0.00 0.00 0.00 2.29
278 279 3.667497 AGGATGTGAGGCGTATGTATG 57.333 47.619 0.00 0.00 0.00 2.39
279 280 3.388024 ACAAGGATGTGAGGCGTATGTAT 59.612 43.478 0.00 0.00 38.69 2.29
280 281 2.764010 ACAAGGATGTGAGGCGTATGTA 59.236 45.455 0.00 0.00 38.69 2.29
281 282 1.555075 ACAAGGATGTGAGGCGTATGT 59.445 47.619 0.00 0.00 38.69 2.29
282 283 2.315925 ACAAGGATGTGAGGCGTATG 57.684 50.000 0.00 0.00 38.69 2.39
283 284 3.350219 AAACAAGGATGTGAGGCGTAT 57.650 42.857 0.00 0.00 40.46 3.06
284 285 2.851263 AAACAAGGATGTGAGGCGTA 57.149 45.000 0.00 0.00 40.46 4.42
285 286 2.851263 TAAACAAGGATGTGAGGCGT 57.149 45.000 0.00 0.00 40.46 5.68
286 287 4.082787 ACAAATAAACAAGGATGTGAGGCG 60.083 41.667 0.00 0.00 40.46 5.52
287 288 5.391312 ACAAATAAACAAGGATGTGAGGC 57.609 39.130 0.00 0.00 40.46 4.70
288 289 6.432783 TGGTACAAATAAACAAGGATGTGAGG 59.567 38.462 0.00 0.00 35.61 3.86
289 290 7.447374 TGGTACAAATAAACAAGGATGTGAG 57.553 36.000 0.00 0.00 35.61 3.51
375 376 2.045280 CTCTCGGCCTACATGGAGG 58.955 63.158 20.84 20.84 39.88 4.30
376 377 1.365633 GCTCTCGGCCTACATGGAG 59.634 63.158 0.00 0.00 38.35 3.86
377 378 3.538614 GCTCTCGGCCTACATGGA 58.461 61.111 0.00 0.00 38.35 3.41
386 387 4.103103 GGCGTTTTGGCTCTCGGC 62.103 66.667 0.00 0.00 40.72 5.54
387 388 1.586154 AATGGCGTTTTGGCTCTCGG 61.586 55.000 0.00 0.00 45.14 4.63
388 389 0.179189 GAATGGCGTTTTGGCTCTCG 60.179 55.000 0.00 0.00 45.14 4.04
389 390 1.131315 GAGAATGGCGTTTTGGCTCTC 59.869 52.381 0.00 0.00 45.14 3.20
390 391 1.168714 GAGAATGGCGTTTTGGCTCT 58.831 50.000 0.00 0.00 45.14 4.09
391 392 0.881118 TGAGAATGGCGTTTTGGCTC 59.119 50.000 0.00 0.00 45.14 4.70
392 393 0.598065 GTGAGAATGGCGTTTTGGCT 59.402 50.000 0.00 0.00 45.14 4.75
393 394 0.598065 AGTGAGAATGGCGTTTTGGC 59.402 50.000 0.00 0.00 45.12 4.52
394 395 3.369546 AAAGTGAGAATGGCGTTTTGG 57.630 42.857 0.00 0.00 0.00 3.28
395 396 5.757886 TCTTAAAGTGAGAATGGCGTTTTG 58.242 37.500 0.00 0.00 0.00 2.44
396 397 5.048713 CCTCTTAAAGTGAGAATGGCGTTTT 60.049 40.000 0.00 0.00 33.68 2.43
397 398 4.455877 CCTCTTAAAGTGAGAATGGCGTTT 59.544 41.667 0.00 0.00 33.68 3.60
398 399 4.003648 CCTCTTAAAGTGAGAATGGCGTT 58.996 43.478 0.00 0.00 33.68 4.84
399 400 3.600388 CCTCTTAAAGTGAGAATGGCGT 58.400 45.455 0.00 0.00 33.68 5.68
400 401 2.352960 GCCTCTTAAAGTGAGAATGGCG 59.647 50.000 0.00 0.00 33.68 5.69
401 402 2.685388 GGCCTCTTAAAGTGAGAATGGC 59.315 50.000 0.00 0.00 35.08 4.40
402 403 3.955471 TGGCCTCTTAAAGTGAGAATGG 58.045 45.455 3.32 0.00 33.68 3.16
403 404 5.964958 TTTGGCCTCTTAAAGTGAGAATG 57.035 39.130 3.32 0.00 33.68 2.67
404 405 8.829373 ATAATTTGGCCTCTTAAAGTGAGAAT 57.171 30.769 3.32 0.00 33.68 2.40
405 406 9.747898 TTATAATTTGGCCTCTTAAAGTGAGAA 57.252 29.630 3.32 0.00 33.68 2.87
406 407 9.396022 CTTATAATTTGGCCTCTTAAAGTGAGA 57.604 33.333 3.32 0.00 33.68 3.27
407 408 8.624776 CCTTATAATTTGGCCTCTTAAAGTGAG 58.375 37.037 3.32 0.00 0.00 3.51
408 409 7.068226 GCCTTATAATTTGGCCTCTTAAAGTGA 59.932 37.037 3.32 0.00 40.71 3.41
409 410 7.203218 GCCTTATAATTTGGCCTCTTAAAGTG 58.797 38.462 3.32 0.00 40.71 3.16
410 411 7.348080 GCCTTATAATTTGGCCTCTTAAAGT 57.652 36.000 3.32 0.00 40.71 2.66
420 421 5.240844 ACGTAGATTGGCCTTATAATTTGGC 59.759 40.000 3.32 5.80 45.42 4.52
421 422 6.877611 ACGTAGATTGGCCTTATAATTTGG 57.122 37.500 3.32 0.00 0.00 3.28
425 426 9.841295 TCTTTTAACGTAGATTGGCCTTATAAT 57.159 29.630 3.32 0.00 0.00 1.28
426 427 9.101655 GTCTTTTAACGTAGATTGGCCTTATAA 57.898 33.333 3.32 0.00 0.00 0.98
427 428 8.259411 TGTCTTTTAACGTAGATTGGCCTTATA 58.741 33.333 3.32 0.00 0.00 0.98
428 429 7.065443 GTGTCTTTTAACGTAGATTGGCCTTAT 59.935 37.037 3.32 0.00 0.00 1.73
429 430 6.369615 GTGTCTTTTAACGTAGATTGGCCTTA 59.630 38.462 3.32 0.00 0.00 2.69
441 442 3.310501 CGAACTTGGGTGTCTTTTAACGT 59.689 43.478 0.00 0.00 0.00 3.99
446 447 3.815809 TCATCGAACTTGGGTGTCTTTT 58.184 40.909 0.00 0.00 0.00 2.27
449 450 3.769844 ACTATCATCGAACTTGGGTGTCT 59.230 43.478 0.00 0.00 0.00 3.41
455 456 5.902681 TCTTACCACTATCATCGAACTTGG 58.097 41.667 0.00 0.00 0.00 3.61
456 457 7.706607 TGAATCTTACCACTATCATCGAACTTG 59.293 37.037 0.00 0.00 0.00 3.16
463 464 8.997323 CCTCATTTGAATCTTACCACTATCATC 58.003 37.037 0.00 0.00 0.00 2.92
465 466 8.089625 TCCTCATTTGAATCTTACCACTATCA 57.910 34.615 0.00 0.00 0.00 2.15
466 467 8.964476 TTCCTCATTTGAATCTTACCACTATC 57.036 34.615 0.00 0.00 0.00 2.08
467 468 8.772250 TCTTCCTCATTTGAATCTTACCACTAT 58.228 33.333 0.00 0.00 0.00 2.12
468 469 8.146053 TCTTCCTCATTTGAATCTTACCACTA 57.854 34.615 0.00 0.00 0.00 2.74
469 470 7.020827 TCTTCCTCATTTGAATCTTACCACT 57.979 36.000 0.00 0.00 0.00 4.00
470 471 7.607991 TCTTCTTCCTCATTTGAATCTTACCAC 59.392 37.037 0.00 0.00 0.00 4.16
508 622 3.537580 GCCACCGTGTCCTCAAATAATA 58.462 45.455 0.00 0.00 0.00 0.98
509 623 2.365582 GCCACCGTGTCCTCAAATAAT 58.634 47.619 0.00 0.00 0.00 1.28
510 624 1.816074 GCCACCGTGTCCTCAAATAA 58.184 50.000 0.00 0.00 0.00 1.40
546 663 4.081185 CCCAATTTGCGTGCCCCC 62.081 66.667 0.00 0.00 0.00 5.40
578 695 1.336240 GCTGCCTACTTTGCCTTGTTG 60.336 52.381 0.00 0.00 0.00 3.33
579 696 0.961753 GCTGCCTACTTTGCCTTGTT 59.038 50.000 0.00 0.00 0.00 2.83
580 697 0.895559 GGCTGCCTACTTTGCCTTGT 60.896 55.000 12.43 0.00 41.92 3.16
598 715 2.113139 GGCGGTGATGGGTATGGG 59.887 66.667 0.00 0.00 0.00 4.00
786 903 4.858200 CGCGAGCGAGCATGCAAC 62.858 66.667 21.98 12.47 42.83 4.17
932 1063 1.819905 GCGGGAGAGAAAGAGAGGG 59.180 63.158 0.00 0.00 0.00 4.30
933 1064 1.435515 CGCGGGAGAGAAAGAGAGG 59.564 63.158 0.00 0.00 0.00 3.69
987 1121 3.075582 ACTTATATAGACGGCCCCTCTCA 59.924 47.826 0.00 0.00 0.00 3.27
994 1128 2.274920 GCGGACTTATATAGACGGCC 57.725 55.000 0.00 0.00 38.35 6.13
999 1133 1.180029 GGCGGGCGGACTTATATAGA 58.820 55.000 0.00 0.00 0.00 1.98
1333 1496 0.247460 TGTGGAGCTTGACGATGAGG 59.753 55.000 0.00 0.00 0.00 3.86
1357 1520 2.946762 GACCACTTGTTGCCGAGC 59.053 61.111 0.00 0.00 0.00 5.03
1568 1734 2.221299 ACCTGGGCGGCTTACTCAA 61.221 57.895 9.56 0.00 35.61 3.02
1569 1735 2.606519 ACCTGGGCGGCTTACTCA 60.607 61.111 9.56 0.00 35.61 3.41
1624 1790 1.338200 CGTTCCTCCTCCTGTTGGAAG 60.338 57.143 0.00 0.00 42.66 3.46
1817 1983 8.662781 TTCCTAAGTTTCATCTATTTCATCCG 57.337 34.615 0.00 0.00 0.00 4.18
1852 2018 2.295349 ACAGCAGGCAGAAAGTTTGATG 59.705 45.455 0.00 0.00 0.00 3.07
1863 2029 2.029649 AGCAACAATTTACAGCAGGCAG 60.030 45.455 0.00 0.00 0.00 4.85
1864 2030 1.962807 AGCAACAATTTACAGCAGGCA 59.037 42.857 0.00 0.00 0.00 4.75
1865 2031 2.599659 GAGCAACAATTTACAGCAGGC 58.400 47.619 0.00 0.00 0.00 4.85
1866 2032 2.094545 GGGAGCAACAATTTACAGCAGG 60.095 50.000 0.00 0.00 0.00 4.85
1934 2103 4.725304 TCCTCCTCACCATCTACTGTAGTA 59.275 45.833 14.11 2.62 0.00 1.82
1935 2104 3.528078 TCCTCCTCACCATCTACTGTAGT 59.472 47.826 14.11 0.09 0.00 2.73
1936 2105 4.141287 CTCCTCCTCACCATCTACTGTAG 58.859 52.174 8.55 8.55 0.00 2.74
1937 2106 3.786450 TCTCCTCCTCACCATCTACTGTA 59.214 47.826 0.00 0.00 0.00 2.74
1938 2107 2.583101 TCTCCTCCTCACCATCTACTGT 59.417 50.000 0.00 0.00 0.00 3.55
1939 2108 2.955660 GTCTCCTCCTCACCATCTACTG 59.044 54.545 0.00 0.00 0.00 2.74
2039 2213 1.679944 CCATTTCATCGGTGGAGCAGT 60.680 52.381 0.00 0.00 34.94 4.40
2042 2216 1.750193 TTCCATTTCATCGGTGGAGC 58.250 50.000 0.00 0.00 42.54 4.70
2044 2218 2.240921 TCCATTCCATTTCATCGGTGGA 59.759 45.455 0.00 0.00 40.13 4.02
2046 2220 3.487376 CGTTCCATTCCATTTCATCGGTG 60.487 47.826 0.00 0.00 0.00 4.94
2047 2221 2.682856 CGTTCCATTCCATTTCATCGGT 59.317 45.455 0.00 0.00 0.00 4.69
2048 2222 2.033299 CCGTTCCATTCCATTTCATCGG 59.967 50.000 0.00 0.00 0.00 4.18
2049 2223 2.942376 TCCGTTCCATTCCATTTCATCG 59.058 45.455 0.00 0.00 0.00 3.84
2050 2224 4.981806 TTCCGTTCCATTCCATTTCATC 57.018 40.909 0.00 0.00 0.00 2.92
2051 2225 4.955450 TCATTCCGTTCCATTCCATTTCAT 59.045 37.500 0.00 0.00 0.00 2.57
2052 2226 4.339748 TCATTCCGTTCCATTCCATTTCA 58.660 39.130 0.00 0.00 0.00 2.69
2053 2227 4.981806 TCATTCCGTTCCATTCCATTTC 57.018 40.909 0.00 0.00 0.00 2.17
2054 2228 5.736951 TTTCATTCCGTTCCATTCCATTT 57.263 34.783 0.00 0.00 0.00 2.32
2055 2229 5.937975 ATTTCATTCCGTTCCATTCCATT 57.062 34.783 0.00 0.00 0.00 3.16
2119 2299 4.013267 AGTTTGAGGAGATGTTCACAGG 57.987 45.455 0.00 0.00 0.00 4.00
2120 2300 4.453819 GGAAGTTTGAGGAGATGTTCACAG 59.546 45.833 0.00 0.00 0.00 3.66
2145 2325 6.017109 GTGTTTCATTTGCCACTTCTCTTCTA 60.017 38.462 0.00 0.00 0.00 2.10
2162 2342 3.283751 TCTTGTTTGGGACGTGTTTCAT 58.716 40.909 0.00 0.00 0.00 2.57
2189 2369 6.342338 ACGACAAGGTCTAGTACTCATTTT 57.658 37.500 0.00 0.00 0.00 1.82
2203 2383 4.341520 AGAAGTGAGAACTAACGACAAGGT 59.658 41.667 0.00 0.00 0.00 3.50
2204 2384 4.872664 AGAAGTGAGAACTAACGACAAGG 58.127 43.478 0.00 0.00 0.00 3.61
2211 2391 9.640963 TGCTCTATTTTAGAAGTGAGAACTAAC 57.359 33.333 0.00 0.00 33.75 2.34
2233 2425 4.278419 ACTGGAACCATGTTAAAACTGCTC 59.722 41.667 0.00 0.00 0.00 4.26
2234 2426 4.215109 ACTGGAACCATGTTAAAACTGCT 58.785 39.130 0.00 0.00 0.00 4.24
2235 2427 4.584327 ACTGGAACCATGTTAAAACTGC 57.416 40.909 0.00 0.00 0.00 4.40
2236 2428 6.142818 TGAACTGGAACCATGTTAAAACTG 57.857 37.500 0.00 0.00 0.00 3.16
2237 2429 6.605594 TCTTGAACTGGAACCATGTTAAAACT 59.394 34.615 0.00 0.00 0.00 2.66
2238 2430 6.801575 TCTTGAACTGGAACCATGTTAAAAC 58.198 36.000 0.00 0.00 0.00 2.43
2239 2431 7.069331 ACATCTTGAACTGGAACCATGTTAAAA 59.931 33.333 0.00 0.82 0.00 1.52
2241 2433 6.068010 ACATCTTGAACTGGAACCATGTTAA 58.932 36.000 0.00 0.00 0.00 2.01
2242 2434 5.630121 ACATCTTGAACTGGAACCATGTTA 58.370 37.500 0.00 0.00 0.00 2.41
2243 2435 4.473444 ACATCTTGAACTGGAACCATGTT 58.527 39.130 7.85 7.85 0.00 2.71
2244 2436 4.104383 ACATCTTGAACTGGAACCATGT 57.896 40.909 0.00 0.00 0.00 3.21
2245 2437 4.763793 AGAACATCTTGAACTGGAACCATG 59.236 41.667 0.00 0.00 0.00 3.66
2246 2438 4.990526 AGAACATCTTGAACTGGAACCAT 58.009 39.130 0.00 0.00 0.00 3.55
2247 2439 4.437682 AGAACATCTTGAACTGGAACCA 57.562 40.909 0.00 0.00 0.00 3.67
2273 2486 1.272490 CCAGCACAACGGACTCTCTAA 59.728 52.381 0.00 0.00 0.00 2.10
2275 2488 1.115930 ACCAGCACAACGGACTCTCT 61.116 55.000 0.00 0.00 0.00 3.10
2322 2540 3.408634 GCAAAACAGCTCTACCTACCAA 58.591 45.455 0.00 0.00 0.00 3.67
2323 2541 2.611971 CGCAAAACAGCTCTACCTACCA 60.612 50.000 0.00 0.00 0.00 3.25
2324 2542 2.000447 CGCAAAACAGCTCTACCTACC 59.000 52.381 0.00 0.00 0.00 3.18
2325 2543 1.393883 GCGCAAAACAGCTCTACCTAC 59.606 52.381 0.30 0.00 0.00 3.18
2372 2590 5.220931 CCCAAAACAGAACAGAAGAGAACAG 60.221 44.000 0.00 0.00 0.00 3.16
2373 2591 4.640201 CCCAAAACAGAACAGAAGAGAACA 59.360 41.667 0.00 0.00 0.00 3.18
2374 2592 4.640647 ACCCAAAACAGAACAGAAGAGAAC 59.359 41.667 0.00 0.00 0.00 3.01
2375 2593 4.855340 ACCCAAAACAGAACAGAAGAGAA 58.145 39.130 0.00 0.00 0.00 2.87
2376 2594 4.503714 ACCCAAAACAGAACAGAAGAGA 57.496 40.909 0.00 0.00 0.00 3.10
2453 2672 1.868498 GATCCAACAACGACCAAACGA 59.132 47.619 0.00 0.00 37.03 3.85
2462 2681 0.179121 TCCGATCCGATCCAACAACG 60.179 55.000 2.69 0.00 0.00 4.10
2473 2692 0.606401 CCCCAATCCAATCCGATCCG 60.606 60.000 0.00 0.00 0.00 4.18
2497 2716 4.999939 CAACACAAAGCGGCGCCC 63.000 66.667 30.40 14.23 0.00 6.13
2514 2733 1.336332 TGCACCAACACAACACAACAC 60.336 47.619 0.00 0.00 0.00 3.32
2515 2734 0.961753 TGCACCAACACAACACAACA 59.038 45.000 0.00 0.00 0.00 3.33
2516 2735 1.067915 AGTGCACCAACACAACACAAC 60.068 47.619 14.63 0.00 43.23 3.32
2517 2736 1.201181 GAGTGCACCAACACAACACAA 59.799 47.619 14.63 0.00 43.23 3.33
2518 2737 0.808125 GAGTGCACCAACACAACACA 59.192 50.000 14.63 0.00 43.23 3.72
2519 2738 0.100503 GGAGTGCACCAACACAACAC 59.899 55.000 14.63 0.00 43.23 3.32
2520 2739 0.034574 AGGAGTGCACCAACACAACA 60.035 50.000 14.63 0.00 43.23 3.33
2521 2740 0.381801 CAGGAGTGCACCAACACAAC 59.618 55.000 14.63 0.00 43.23 3.32
2522 2741 0.034574 ACAGGAGTGCACCAACACAA 60.035 50.000 14.63 0.00 43.23 3.33
2523 2742 0.463654 GACAGGAGTGCACCAACACA 60.464 55.000 14.63 0.00 43.23 3.72
2573 2801 0.685097 TCTTTTCAGACTGGTCCGGG 59.315 55.000 0.00 0.00 0.00 5.73
2598 2826 5.387113 AAAAGGGGAAATTCAGCCTTTTT 57.613 34.783 0.00 5.67 35.02 1.94
2631 2859 5.838531 AAACAGGTTCCATTTTCGTTGTA 57.161 34.783 0.00 0.00 0.00 2.41
2632 2860 4.729227 AAACAGGTTCCATTTTCGTTGT 57.271 36.364 0.00 0.00 0.00 3.32
2661 2889 8.537016 CGGTCCATTTCTCCCTGTTTATATATA 58.463 37.037 0.00 0.00 0.00 0.86
2684 2912 8.179509 ACAGTAGTATATGCTAAGAAATCGGT 57.820 34.615 1.73 0.00 0.00 4.69
2726 2954 0.542938 CGCCCCAGATGGAGGAGATA 60.543 60.000 0.00 0.00 37.39 1.98
2739 2970 4.292145 TCCATTTGTGGCGCCCCA 62.292 61.111 26.77 17.94 39.32 4.96
2760 2991 0.175760 TTCCGAGAGCAGGGATTTCG 59.824 55.000 0.00 0.00 31.11 3.46
2766 2997 0.321671 TGACTTTTCCGAGAGCAGGG 59.678 55.000 0.00 0.00 0.00 4.45
2769 3000 1.335964 CGACTGACTTTTCCGAGAGCA 60.336 52.381 0.00 0.00 0.00 4.26
2776 3007 2.135933 CCACTGACGACTGACTTTTCC 58.864 52.381 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.