Multiple sequence alignment - TraesCS7A01G258000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G258000 chr7A 100.000 2195 0 0 1 2195 248119979 248122173 0.000000e+00 4054.0
1 TraesCS7A01G258000 chr7A 89.899 1386 120 7 99 1482 248222494 248223861 0.000000e+00 1766.0
2 TraesCS7A01G258000 chr7A 87.234 564 50 17 1491 2047 252455260 252454712 6.650000e-175 623.0
3 TraesCS7A01G258000 chr7A 88.353 249 27 2 1 248 252474488 252474241 4.580000e-77 298.0
4 TraesCS7A01G258000 chr7A 84.426 122 13 4 1035 1155 369068154 369068270 4.950000e-22 115.0
5 TraesCS7A01G258000 chr7A 93.333 45 2 1 1252 1295 89489091 89489047 5.060000e-07 65.8
6 TraesCS7A01G258000 chr7A 100.000 34 0 0 430 463 529360108 529360075 1.820000e-06 63.9
7 TraesCS7A01G258000 chr7A 92.683 41 2 1 1256 1295 271491802 271491842 8.460000e-05 58.4
8 TraesCS7A01G258000 chr7A 80.822 73 12 2 451 521 259582378 259582306 3.040000e-04 56.5
9 TraesCS7A01G258000 chr7A 100.000 29 0 0 493 521 312162203 312162175 1.000000e-03 54.7
10 TraesCS7A01G258000 chr4A 83.440 936 90 22 1290 2195 296167061 296166161 0.000000e+00 809.0
11 TraesCS7A01G258000 chr4A 84.903 669 77 21 1536 2193 347529324 347528669 0.000000e+00 654.0
12 TraesCS7A01G258000 chr4A 82.361 737 106 21 1446 2172 564276792 564277514 8.610000e-174 619.0
13 TraesCS7A01G258000 chr4A 80.371 377 58 12 27 392 290809476 290809105 2.780000e-69 272.0
14 TraesCS7A01G258000 chr4A 88.462 130 12 2 794 920 730990016 730989887 1.050000e-33 154.0
15 TraesCS7A01G258000 chr4A 84.516 155 21 3 911 1064 273535264 273535416 1.360000e-32 150.0
16 TraesCS7A01G258000 chr4A 86.765 136 16 2 1066 1201 355910698 355910565 1.360000e-32 150.0
17 TraesCS7A01G258000 chr4A 84.177 158 20 5 707 860 172334809 172334965 4.880000e-32 148.0
18 TraesCS7A01G258000 chr4A 80.247 162 21 5 1067 1218 203479291 203479131 6.410000e-21 111.0
19 TraesCS7A01G258000 chr4A 86.420 81 7 4 707 784 124244229 124244308 3.880000e-13 86.1
20 TraesCS7A01G258000 chr4A 95.556 45 2 0 1251 1295 369556039 369555995 3.020000e-09 73.1
21 TraesCS7A01G258000 chr4A 84.507 71 10 1 451 520 427042067 427042137 3.910000e-08 69.4
22 TraesCS7A01G258000 chr6A 86.227 697 74 20 1488 2172 60686230 60685544 0.000000e+00 736.0
23 TraesCS7A01G258000 chr6A 82.872 759 92 31 1460 2193 103217288 103216543 0.000000e+00 647.0
24 TraesCS7A01G258000 chr6A 81.250 160 20 4 1067 1216 366959953 366960112 1.060000e-23 121.0
25 TraesCS7A01G258000 chr6A 93.182 44 2 1 1253 1295 37714603 37714560 1.820000e-06 63.9
26 TraesCS7A01G258000 chr2A 86.029 680 72 17 1526 2195 467178983 467178317 0.000000e+00 708.0
27 TraesCS7A01G258000 chr2A 81.214 692 113 15 1488 2170 299432908 299432225 1.920000e-150 542.0
28 TraesCS7A01G258000 chr2A 91.561 237 18 2 1960 2195 263387182 263387417 2.100000e-85 326.0
29 TraesCS7A01G258000 chr2A 87.279 283 31 5 1913 2193 312421507 312421786 3.520000e-83 318.0
30 TraesCS7A01G258000 chr2A 85.446 213 24 4 1990 2195 298576127 298575915 4.750000e-52 215.0
31 TraesCS7A01G258000 chr2A 84.076 157 19 6 707 858 361775251 361775406 1.760000e-31 147.0
32 TraesCS7A01G258000 chr2A 94.231 52 3 0 1067 1118 281888634 281888685 1.810000e-11 80.5
33 TraesCS7A01G258000 chr2A 85.938 64 5 3 461 521 116563197 116563135 5.060000e-07 65.8
34 TraesCS7A01G258000 chr2A 85.714 63 7 2 461 521 133796959 133797021 5.060000e-07 65.8
35 TraesCS7A01G258000 chr6D 84.365 614 86 9 1563 2172 281844808 281844201 5.220000e-166 593.0
36 TraesCS7A01G258000 chr6D 86.869 198 24 2 407 604 235490550 235490355 1.020000e-53 220.0
37 TraesCS7A01G258000 chr6D 82.456 114 18 2 1 113 143528088 143527976 4.990000e-17 99.0
38 TraesCS7A01G258000 chr3A 81.197 702 111 20 1486 2174 173961711 173962404 1.480000e-151 545.0
39 TraesCS7A01G258000 chr3A 81.208 298 30 12 1917 2195 337017180 337017470 1.320000e-52 217.0
40 TraesCS7A01G258000 chr3A 84.507 213 26 4 1990 2195 290755382 290755594 1.030000e-48 204.0
41 TraesCS7A01G258000 chr3A 93.860 114 7 0 1492 1605 408109009 408108896 2.900000e-39 172.0
42 TraesCS7A01G258000 chr3A 92.982 114 8 0 1492 1605 408117454 408117341 1.350000e-37 167.0
43 TraesCS7A01G258000 chr3A 85.333 75 6 3 403 473 583810646 583810719 3.020000e-09 73.1
44 TraesCS7A01G258000 chr3A 85.075 67 8 2 416 481 410235003 410234938 1.410000e-07 67.6
45 TraesCS7A01G258000 chr1A 84.568 324 42 5 124 443 183089980 183090299 4.550000e-82 315.0
46 TraesCS7A01G258000 chr1A 79.753 405 67 12 80 477 187555325 187555721 1.660000e-71 279.0
47 TraesCS7A01G258000 chr1B 80.882 408 56 14 50 441 427265403 427265804 3.540000e-78 302.0
48 TraesCS7A01G258000 chr1B 87.395 119 12 3 1369 1486 448867761 448867645 1.370000e-27 134.0
49 TraesCS7A01G258000 chr1B 87.395 119 12 3 1369 1486 448875750 448875634 1.370000e-27 134.0
50 TraesCS7A01G258000 chr1B 87.395 119 12 3 1369 1486 543094779 543094663 1.370000e-27 134.0
51 TraesCS7A01G258000 chr1B 87.395 119 12 3 1369 1486 543102591 543102475 1.370000e-27 134.0
52 TraesCS7A01G258000 chr1B 86.555 119 13 3 1369 1486 83696764 83696880 6.360000e-26 128.0
53 TraesCS7A01G258000 chr7B 78.251 446 69 24 1 437 103385609 103385183 6.010000e-66 261.0
54 TraesCS7A01G258000 chr5B 79.726 365 60 11 80 438 203178491 203178847 3.620000e-63 252.0
55 TraesCS7A01G258000 chr5B 79.726 365 60 11 80 438 203199602 203199958 3.620000e-63 252.0
56 TraesCS7A01G258000 chr5B 83.217 143 19 5 1350 1490 524838047 524838186 2.290000e-25 126.0
57 TraesCS7A01G258000 chr5B 83.333 114 16 3 1 113 680863511 680863400 3.860000e-18 102.0
58 TraesCS7A01G258000 chr1D 87.215 219 21 7 707 920 230528699 230528915 2.180000e-60 243.0
59 TraesCS7A01G258000 chr1D 88.000 200 19 4 725 920 230551739 230551937 4.710000e-57 231.0
60 TraesCS7A01G258000 chr3B 76.940 451 85 16 2 442 109976265 109976706 2.820000e-59 239.0
61 TraesCS7A01G258000 chr3B 84.000 75 7 3 403 473 168821208 168821281 1.410000e-07 67.6
62 TraesCS7A01G258000 chr5D 86.301 219 24 5 707 920 220784212 220784429 1.310000e-57 233.0
63 TraesCS7A01G258000 chr4D 86.275 153 17 4 707 856 335434626 335434777 1.740000e-36 163.0
64 TraesCS7A01G258000 chr4D 82.456 114 18 2 1 113 119671051 119670939 4.990000e-17 99.0
65 TraesCS7A01G258000 chr5A 86.184 152 17 4 707 855 218527554 218527704 6.270000e-36 161.0
66 TraesCS7A01G258000 chr5A 88.462 130 12 2 794 920 468863652 468863523 1.050000e-33 154.0
67 TraesCS7A01G258000 chr5A 85.600 125 17 1 1067 1191 261646261 261646384 1.770000e-26 130.0
68 TraesCS7A01G258000 chr5A 91.667 48 4 0 1248 1295 104756868 104756915 1.410000e-07 67.6
69 TraesCS7A01G258000 chr5A 93.333 45 2 1 1252 1295 265250460 265250416 5.060000e-07 65.8
70 TraesCS7A01G258000 chr5A 93.333 45 2 1 1252 1295 265267227 265267183 5.060000e-07 65.8
71 TraesCS7A01G258000 chr5A 93.333 45 0 3 1252 1294 267795100 267795143 1.820000e-06 63.9
72 TraesCS7A01G258000 chrUn 89.431 123 12 1 794 915 100217818 100217940 1.050000e-33 154.0
73 TraesCS7A01G258000 chr2B 85.185 135 14 5 1355 1486 484200924 484201055 1.370000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G258000 chr7A 248119979 248122173 2194 False 4054 4054 100.000 1 2195 1 chr7A.!!$F1 2194
1 TraesCS7A01G258000 chr7A 248222494 248223861 1367 False 1766 1766 89.899 99 1482 1 chr7A.!!$F2 1383
2 TraesCS7A01G258000 chr7A 252454712 252455260 548 True 623 623 87.234 1491 2047 1 chr7A.!!$R2 556
3 TraesCS7A01G258000 chr4A 296166161 296167061 900 True 809 809 83.440 1290 2195 1 chr4A.!!$R3 905
4 TraesCS7A01G258000 chr4A 347528669 347529324 655 True 654 654 84.903 1536 2193 1 chr4A.!!$R4 657
5 TraesCS7A01G258000 chr4A 564276792 564277514 722 False 619 619 82.361 1446 2172 1 chr4A.!!$F5 726
6 TraesCS7A01G258000 chr6A 60685544 60686230 686 True 736 736 86.227 1488 2172 1 chr6A.!!$R2 684
7 TraesCS7A01G258000 chr6A 103216543 103217288 745 True 647 647 82.872 1460 2193 1 chr6A.!!$R3 733
8 TraesCS7A01G258000 chr2A 467178317 467178983 666 True 708 708 86.029 1526 2195 1 chr2A.!!$R4 669
9 TraesCS7A01G258000 chr2A 299432225 299432908 683 True 542 542 81.214 1488 2170 1 chr2A.!!$R3 682
10 TraesCS7A01G258000 chr6D 281844201 281844808 607 True 593 593 84.365 1563 2172 1 chr6D.!!$R3 609
11 TraesCS7A01G258000 chr3A 173961711 173962404 693 False 545 545 81.197 1486 2174 1 chr3A.!!$F1 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 250 0.038455 CCAATTACCGGGTTCCCACA 59.962 55.0 4.31 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1463 0.33812 AGAGAGAGCCCAACTAGCCT 59.662 55.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.614124 AATATGATTTTTGGCATTTGTCACC 57.386 32.000 0.00 0.00 0.00 4.02
61 62 4.412796 TGATTTTTGGCATTTGTCACCA 57.587 36.364 0.00 0.00 0.00 4.17
62 63 4.970711 TGATTTTTGGCATTTGTCACCAT 58.029 34.783 0.00 0.00 32.39 3.55
63 64 4.755629 TGATTTTTGGCATTTGTCACCATG 59.244 37.500 0.00 0.00 32.39 3.66
64 65 2.835580 TTTGGCATTTGTCACCATGG 57.164 45.000 11.19 11.19 32.39 3.66
65 66 0.321021 TTGGCATTTGTCACCATGGC 59.679 50.000 13.04 9.73 44.32 4.40
66 67 1.153784 GGCATTTGTCACCATGGCG 60.154 57.895 13.04 1.26 36.36 5.69
67 68 1.153784 GCATTTGTCACCATGGCGG 60.154 57.895 13.04 4.40 42.50 6.13
68 69 1.594194 GCATTTGTCACCATGGCGGA 61.594 55.000 13.04 7.19 38.63 5.54
69 70 0.887247 CATTTGTCACCATGGCGGAA 59.113 50.000 13.04 0.11 38.63 4.30
70 71 1.135315 CATTTGTCACCATGGCGGAAG 60.135 52.381 13.04 0.00 38.63 3.46
71 72 0.893270 TTTGTCACCATGGCGGAAGG 60.893 55.000 13.04 0.00 38.63 3.46
72 73 1.773856 TTGTCACCATGGCGGAAGGA 61.774 55.000 13.04 0.00 38.63 3.36
73 74 1.002624 GTCACCATGGCGGAAGGAA 60.003 57.895 13.04 0.00 38.63 3.36
74 75 0.608035 GTCACCATGGCGGAAGGAAA 60.608 55.000 13.04 0.00 38.63 3.13
75 76 0.111446 TCACCATGGCGGAAGGAAAA 59.889 50.000 13.04 0.00 38.63 2.29
76 77 0.527565 CACCATGGCGGAAGGAAAAG 59.472 55.000 13.04 0.00 38.63 2.27
77 78 0.611896 ACCATGGCGGAAGGAAAAGG 60.612 55.000 13.04 0.00 38.63 3.11
78 79 1.322538 CCATGGCGGAAGGAAAAGGG 61.323 60.000 0.00 0.00 36.56 3.95
79 80 1.000359 ATGGCGGAAGGAAAAGGGG 60.000 57.895 0.00 0.00 0.00 4.79
80 81 2.362503 GGCGGAAGGAAAAGGGGG 60.363 66.667 0.00 0.00 0.00 5.40
81 82 3.068691 GCGGAAGGAAAAGGGGGC 61.069 66.667 0.00 0.00 0.00 5.80
82 83 2.362503 CGGAAGGAAAAGGGGGCC 60.363 66.667 0.00 0.00 0.00 5.80
83 84 2.858655 GGAAGGAAAAGGGGGCCA 59.141 61.111 4.39 0.00 0.00 5.36
84 85 1.609501 GGAAGGAAAAGGGGGCCAC 60.610 63.158 4.39 0.00 0.00 5.01
85 86 1.155155 GAAGGAAAAGGGGGCCACA 59.845 57.895 9.35 0.00 0.00 4.17
86 87 0.471022 GAAGGAAAAGGGGGCCACAA 60.471 55.000 9.35 0.00 0.00 3.33
87 88 0.193321 AAGGAAAAGGGGGCCACAAT 59.807 50.000 9.35 0.00 0.00 2.71
88 89 0.545071 AGGAAAAGGGGGCCACAATG 60.545 55.000 9.35 0.00 0.00 2.82
89 90 1.552799 GGAAAAGGGGGCCACAATGG 61.553 60.000 9.35 0.00 41.55 3.16
115 116 2.596046 AAATGGTGCCACGGCGAA 60.596 55.556 16.62 0.00 45.51 4.70
116 117 2.136196 GAAATGGTGCCACGGCGAAA 62.136 55.000 16.62 0.00 45.51 3.46
118 119 1.739338 AATGGTGCCACGGCGAAAAA 61.739 50.000 16.62 0.00 45.51 1.94
153 155 3.131478 GGCAACATTCCGGTCCCG 61.131 66.667 0.00 0.00 39.44 5.14
154 156 2.046700 GCAACATTCCGGTCCCGA 60.047 61.111 7.42 0.00 42.83 5.14
161 163 1.411246 CATTCCGGTCCCGATAACTCA 59.589 52.381 7.42 0.00 42.83 3.41
183 185 4.558538 ATTGAGATACCGATGCAAAAGC 57.441 40.909 0.00 0.00 0.00 3.51
188 190 1.083489 TACCGATGCAAAAGCGAAGG 58.917 50.000 0.00 0.00 41.20 3.46
222 224 0.108585 AACACGCAAGAGATGGTGGT 59.891 50.000 0.00 0.00 43.62 4.16
229 231 2.636830 CAAGAGATGGTGGTGTGATCC 58.363 52.381 0.00 0.00 0.00 3.36
232 234 1.281867 GAGATGGTGGTGTGATCCCAA 59.718 52.381 0.00 0.00 32.72 4.12
248 250 0.038455 CCAATTACCGGGTTCCCACA 59.962 55.000 4.31 0.00 0.00 4.17
261 263 1.884464 CCCACATGTCGATGGCTCG 60.884 63.158 0.00 0.77 46.41 5.03
290 292 0.828959 GAACGTGCACGAAACAAACG 59.171 50.000 42.94 16.07 43.02 3.60
292 294 1.061253 CGTGCACGAAACAAACGGT 59.939 52.632 34.93 0.00 43.02 4.83
293 295 0.922111 CGTGCACGAAACAAACGGTC 60.922 55.000 34.93 0.00 43.02 4.79
294 296 0.097325 GTGCACGAAACAAACGGTCA 59.903 50.000 0.00 0.00 34.93 4.02
295 297 1.018148 TGCACGAAACAAACGGTCAT 58.982 45.000 0.00 0.00 34.93 3.06
297 299 1.924191 GCACGAAACAAACGGTCATGG 60.924 52.381 0.00 0.00 34.93 3.66
298 300 1.600013 CACGAAACAAACGGTCATGGA 59.400 47.619 0.00 0.00 34.93 3.41
309 311 1.586154 GGTCATGGAGCAAACACGGG 61.586 60.000 0.00 0.00 0.00 5.28
312 314 1.152830 ATGGAGCAAACACGGGGTT 59.847 52.632 0.00 0.00 42.98 4.11
355 357 1.226323 GTCCACGACGGTCATCTCG 60.226 63.158 9.10 0.00 35.57 4.04
407 409 0.604511 GTTCGGGTTCAATGGGACGT 60.605 55.000 0.00 0.00 0.00 4.34
424 426 0.924363 CGTAGTCATTCTCGCGACGG 60.924 60.000 3.71 0.00 37.23 4.79
430 432 0.866061 CATTCTCGCGACGGTAGTGG 60.866 60.000 3.71 0.00 0.00 4.00
444 446 3.698040 CGGTAGTGGAAGTAGTGGTACAT 59.302 47.826 0.00 0.00 44.52 2.29
447 449 5.363005 GGTAGTGGAAGTAGTGGTACATGAT 59.637 44.000 0.00 0.00 44.52 2.45
456 458 3.628008 AGTGGTACATGATGACGGTAGA 58.372 45.455 0.00 0.00 44.52 2.59
457 459 3.632604 AGTGGTACATGATGACGGTAGAG 59.367 47.826 0.00 0.00 44.52 2.43
458 460 2.956333 TGGTACATGATGACGGTAGAGG 59.044 50.000 0.00 0.00 0.00 3.69
466 468 3.945921 TGATGACGGTAGAGGTACTTGAG 59.054 47.826 0.00 0.00 41.55 3.02
473 475 3.318557 GGTAGAGGTACTTGAGGAATCCG 59.681 52.174 0.00 0.00 41.55 4.18
481 483 4.625607 ACTTGAGGAATCCGAGTTCTTT 57.374 40.909 0.00 0.00 0.00 2.52
485 487 2.236395 GAGGAATCCGAGTTCTTTGGGA 59.764 50.000 0.00 0.00 0.00 4.37
493 495 3.632145 CCGAGTTCTTTGGGATAATTGGG 59.368 47.826 0.00 0.00 0.00 4.12
494 496 4.270008 CGAGTTCTTTGGGATAATTGGGT 58.730 43.478 0.00 0.00 0.00 4.51
495 497 5.433526 CGAGTTCTTTGGGATAATTGGGTA 58.566 41.667 0.00 0.00 0.00 3.69
496 498 5.296035 CGAGTTCTTTGGGATAATTGGGTAC 59.704 44.000 0.00 0.00 0.00 3.34
497 499 6.402981 AGTTCTTTGGGATAATTGGGTACT 57.597 37.500 0.00 0.00 0.00 2.73
498 500 6.424032 AGTTCTTTGGGATAATTGGGTACTC 58.576 40.000 0.00 0.00 0.00 2.59
499 501 5.031066 TCTTTGGGATAATTGGGTACTCG 57.969 43.478 0.00 0.00 0.00 4.18
500 502 4.472108 TCTTTGGGATAATTGGGTACTCGT 59.528 41.667 0.00 0.00 0.00 4.18
501 503 4.847990 TTGGGATAATTGGGTACTCGTT 57.152 40.909 0.00 0.00 0.00 3.85
502 504 4.411256 TGGGATAATTGGGTACTCGTTC 57.589 45.455 0.00 0.00 0.00 3.95
503 505 3.775866 TGGGATAATTGGGTACTCGTTCA 59.224 43.478 0.00 0.00 0.00 3.18
504 506 4.410883 TGGGATAATTGGGTACTCGTTCAT 59.589 41.667 0.00 0.00 0.00 2.57
517 519 4.470462 ACTCGTTCATGTTGTAGTCGTAC 58.530 43.478 0.00 0.00 0.00 3.67
534 536 2.094894 CGTACATGGTTCGTAGACGTCT 59.905 50.000 23.66 23.66 40.80 4.18
564 566 1.883084 GGAGGTACTTGGCGCATCG 60.883 63.158 10.83 0.00 41.55 3.84
643 645 2.332063 ATCCCTGTACTTGGCATTCG 57.668 50.000 0.00 0.00 0.00 3.34
660 662 3.478857 TTCGGTGTGGTACTTGTCATT 57.521 42.857 0.00 0.00 0.00 2.57
662 664 1.804151 CGGTGTGGTACTTGTCATTGG 59.196 52.381 0.00 0.00 0.00 3.16
676 678 2.415512 GTCATTGGTAGTCGAACTTGGC 59.584 50.000 0.00 0.00 0.00 4.52
683 685 2.165301 GTCGAACTTGGCGATCCGG 61.165 63.158 0.00 0.00 40.19 5.14
687 689 0.105039 GAACTTGGCGATCCGGAGAT 59.895 55.000 11.34 0.00 34.57 2.75
717 719 4.189231 GGCGAATCCAAGTAGTTGTACAT 58.811 43.478 9.42 0.00 34.01 2.29
726 728 4.967084 AGTAGTTGTACATGGGTCAACA 57.033 40.909 22.17 11.77 42.33 3.33
753 755 0.550914 AACTTGAGGTGGTCTTGGCA 59.449 50.000 0.00 0.00 0.00 4.92
756 758 0.321564 TTGAGGTGGTCTTGGCATCG 60.322 55.000 0.00 0.00 0.00 3.84
763 765 1.648467 GGTCTTGGCATCGGACTTGC 61.648 60.000 12.88 0.00 39.41 4.01
773 775 3.723348 GGACTTGCGGCGTTGGAC 61.723 66.667 9.37 0.00 0.00 4.02
784 786 0.951558 GCGTTGGACAGAAACATGGT 59.048 50.000 0.00 0.00 0.00 3.55
806 809 2.047274 TTCAGCTGCTACCCACGC 60.047 61.111 9.47 0.00 0.00 5.34
813 816 2.329539 CTGCTACCCACGCCCATGAT 62.330 60.000 0.00 0.00 0.00 2.45
839 842 4.821589 GGCTCGGGCAGGAAGTCG 62.822 72.222 10.74 0.00 40.87 4.18
884 887 2.127232 GTGGTGGTGGCTTGCAAGT 61.127 57.895 26.55 0.00 0.00 3.16
926 929 4.504916 CAGGCAGGGCGTCTCGAG 62.505 72.222 5.93 5.93 0.00 4.04
949 952 0.178932 AGAGGAGTATATGGCGGCCA 60.179 55.000 26.11 26.11 38.19 5.36
1044 1047 0.257905 GCGGGGTAGGGGAAGAAAAT 59.742 55.000 0.00 0.00 0.00 1.82
1054 1057 1.186200 GGAAGAAAATGGCAGGACCC 58.814 55.000 0.00 0.00 37.83 4.46
1057 1060 0.625849 AGAAAATGGCAGGACCCGAT 59.374 50.000 0.00 0.00 37.83 4.18
1064 1067 4.899239 CAGGACCCGATGGCGAGC 62.899 72.222 0.00 0.00 40.82 5.03
1067 1070 4.593864 GACCCGATGGCGAGCTCC 62.594 72.222 8.47 0.47 40.82 4.70
1106 1109 3.992641 TGGTGGCGAGGAGGAGGA 61.993 66.667 0.00 0.00 0.00 3.71
1119 1122 2.043248 GAGGACCTCGGGTGGCTA 60.043 66.667 5.55 0.00 35.25 3.93
1125 1128 2.511600 CTCGGGTGGCTAAAGGCG 60.512 66.667 0.00 0.00 44.42 5.52
1156 1159 1.223487 GGGCGATGTAGGGAGCAAA 59.777 57.895 0.00 0.00 0.00 3.68
1158 1161 1.459450 GGCGATGTAGGGAGCAAAAA 58.541 50.000 0.00 0.00 0.00 1.94
1236 1239 1.302511 AGGCGATGCAAGTTTCGGT 60.303 52.632 9.30 0.00 35.93 4.69
1238 1241 1.574428 GCGATGCAAGTTTCGGTGT 59.426 52.632 9.30 0.00 35.93 4.16
1247 1250 1.019278 AGTTTCGGTGTAGCGCCATG 61.019 55.000 2.29 0.00 32.88 3.66
1303 1306 1.380650 GAAGGAGAGGGAGGCGAGT 60.381 63.158 0.00 0.00 0.00 4.18
1311 1314 2.124693 GGGAGGCGAGTGAGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
1324 1327 0.402566 AGAGGAGGGGGATTGATGGG 60.403 60.000 0.00 0.00 0.00 4.00
1341 1344 3.626924 GGAGACGGGTGTGGCAGT 61.627 66.667 0.00 0.00 0.00 4.40
1343 1346 3.161450 AGACGGGTGTGGCAGTGT 61.161 61.111 0.00 0.00 0.00 3.55
1364 1367 1.690219 GCACGGATGGAGAGGGTGAT 61.690 60.000 0.00 0.00 0.00 3.06
1387 1391 0.106419 GAGAGAGAGGTGGATCGGGT 60.106 60.000 0.00 0.00 0.00 5.28
1409 1413 0.755698 CTGGCGGCTAGGGTTAGAGA 60.756 60.000 11.43 0.00 0.00 3.10
1471 1475 2.109181 CGGCTAGGCTAGTTGGGC 59.891 66.667 21.92 8.66 0.00 5.36
1472 1476 2.435693 CGGCTAGGCTAGTTGGGCT 61.436 63.158 21.92 0.00 44.34 5.19
1477 1481 1.960689 CTAGGCTAGTTGGGCTCTCTC 59.039 57.143 13.53 0.00 42.20 3.20
1559 1574 5.372959 AGAAGAAAAGAAAGGGAGGGTTAGT 59.627 40.000 0.00 0.00 0.00 2.24
1581 1598 1.194121 AAGGATTTGTGCAAGGGGGC 61.194 55.000 0.00 0.00 0.00 5.80
1725 1758 3.557595 CGAATGGACTCTAAATGGTCTGC 59.442 47.826 0.00 0.00 33.46 4.26
1743 1776 4.574013 GTCTGCGATTTGAGGAAATGATCT 59.426 41.667 0.00 0.00 31.58 2.75
1752 1785 7.528996 TTTGAGGAAATGATCTCACACAATT 57.471 32.000 0.00 0.00 39.43 2.32
1838 1874 9.535878 TGCAATTTAACTTAAAAGGTCGAAAAT 57.464 25.926 0.00 0.00 0.00 1.82
1854 1908 6.374613 GGTCGAAAATGAAGGATAGGAAGTTT 59.625 38.462 0.00 0.00 0.00 2.66
1908 1964 4.671377 CAATTGTGTTATGGGTGATTCCG 58.329 43.478 0.00 0.00 37.00 4.30
1916 1972 6.987992 GTGTTATGGGTGATTCCGAGTTAATA 59.012 38.462 0.00 0.00 37.00 0.98
1922 1978 7.667557 TGGGTGATTCCGAGTTAATAGAATAG 58.332 38.462 0.00 0.00 37.00 1.73
2133 2221 6.627690 ATCACACGACAAAACTCGTAATAG 57.372 37.500 0.00 0.00 45.09 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.328845 GGTGACAAATGCCAAAAATCATATTAT 57.671 29.630 0.00 0.00 0.00 1.28
35 36 8.316946 TGGTGACAAATGCCAAAAATCATATTA 58.683 29.630 0.00 0.00 37.44 0.98
36 37 7.166851 TGGTGACAAATGCCAAAAATCATATT 58.833 30.769 0.00 0.00 37.44 1.28
37 38 6.709281 TGGTGACAAATGCCAAAAATCATAT 58.291 32.000 0.00 0.00 37.44 1.78
38 39 6.106648 TGGTGACAAATGCCAAAAATCATA 57.893 33.333 0.00 0.00 37.44 2.15
39 40 4.970711 TGGTGACAAATGCCAAAAATCAT 58.029 34.783 0.00 0.00 37.44 2.45
40 41 4.412796 TGGTGACAAATGCCAAAAATCA 57.587 36.364 0.00 0.00 37.44 2.57
55 56 0.608035 TTTCCTTCCGCCATGGTGAC 60.608 55.000 27.12 1.89 39.52 3.67
56 57 0.111446 TTTTCCTTCCGCCATGGTGA 59.889 50.000 27.12 14.19 39.52 4.02
57 58 0.527565 CTTTTCCTTCCGCCATGGTG 59.472 55.000 18.88 18.88 39.52 4.17
58 59 0.611896 CCTTTTCCTTCCGCCATGGT 60.612 55.000 14.67 0.00 39.52 3.55
59 60 1.322538 CCCTTTTCCTTCCGCCATGG 61.323 60.000 7.63 7.63 40.09 3.66
60 61 1.322538 CCCCTTTTCCTTCCGCCATG 61.323 60.000 0.00 0.00 0.00 3.66
61 62 1.000359 CCCCTTTTCCTTCCGCCAT 60.000 57.895 0.00 0.00 0.00 4.40
62 63 2.438795 CCCCTTTTCCTTCCGCCA 59.561 61.111 0.00 0.00 0.00 5.69
63 64 2.362503 CCCCCTTTTCCTTCCGCC 60.363 66.667 0.00 0.00 0.00 6.13
64 65 3.068691 GCCCCCTTTTCCTTCCGC 61.069 66.667 0.00 0.00 0.00 5.54
65 66 2.362503 GGCCCCCTTTTCCTTCCG 60.363 66.667 0.00 0.00 0.00 4.30
66 67 1.609501 GTGGCCCCCTTTTCCTTCC 60.610 63.158 0.00 0.00 0.00 3.46
67 68 0.471022 TTGTGGCCCCCTTTTCCTTC 60.471 55.000 0.00 0.00 0.00 3.46
68 69 0.193321 ATTGTGGCCCCCTTTTCCTT 59.807 50.000 0.00 0.00 0.00 3.36
69 70 0.545071 CATTGTGGCCCCCTTTTCCT 60.545 55.000 0.00 0.00 0.00 3.36
70 71 1.552799 CCATTGTGGCCCCCTTTTCC 61.553 60.000 0.00 0.00 0.00 3.13
71 72 1.982430 CCATTGTGGCCCCCTTTTC 59.018 57.895 0.00 0.00 0.00 2.29
72 73 4.231140 CCATTGTGGCCCCCTTTT 57.769 55.556 0.00 0.00 0.00 2.27
81 82 0.312416 TTTCCGTTTCGCCATTGTGG 59.688 50.000 0.00 0.00 41.55 4.17
82 83 1.984990 CATTTCCGTTTCGCCATTGTG 59.015 47.619 0.00 0.00 0.00 3.33
83 84 1.067915 CCATTTCCGTTTCGCCATTGT 60.068 47.619 0.00 0.00 0.00 2.71
84 85 1.067915 ACCATTTCCGTTTCGCCATTG 60.068 47.619 0.00 0.00 0.00 2.82
85 86 1.067915 CACCATTTCCGTTTCGCCATT 60.068 47.619 0.00 0.00 0.00 3.16
86 87 0.525761 CACCATTTCCGTTTCGCCAT 59.474 50.000 0.00 0.00 0.00 4.40
87 88 1.953017 CACCATTTCCGTTTCGCCA 59.047 52.632 0.00 0.00 0.00 5.69
88 89 1.443702 GCACCATTTCCGTTTCGCC 60.444 57.895 0.00 0.00 0.00 5.54
89 90 1.443702 GGCACCATTTCCGTTTCGC 60.444 57.895 0.00 0.00 0.00 4.70
90 91 0.386731 GTGGCACCATTTCCGTTTCG 60.387 55.000 6.29 0.00 0.00 3.46
91 92 0.386731 CGTGGCACCATTTCCGTTTC 60.387 55.000 12.86 0.00 0.00 2.78
92 93 1.657556 CGTGGCACCATTTCCGTTT 59.342 52.632 12.86 0.00 0.00 3.60
93 94 2.265182 CCGTGGCACCATTTCCGTT 61.265 57.895 12.86 0.00 0.00 4.44
94 95 2.671619 CCGTGGCACCATTTCCGT 60.672 61.111 12.86 0.00 0.00 4.69
95 96 4.114997 GCCGTGGCACCATTTCCG 62.115 66.667 12.86 0.00 41.49 4.30
96 97 4.114997 CGCCGTGGCACCATTTCC 62.115 66.667 12.86 0.00 42.06 3.13
97 98 2.136196 TTTCGCCGTGGCACCATTTC 62.136 55.000 12.86 0.00 42.06 2.17
116 117 2.416701 CCGTAGCGCCATTTCCATTTTT 60.417 45.455 2.29 0.00 0.00 1.94
118 119 0.738389 CCGTAGCGCCATTTCCATTT 59.262 50.000 2.29 0.00 0.00 2.32
128 129 2.403586 GAATGTTGCCGTAGCGCC 59.596 61.111 2.29 0.00 44.31 6.53
130 131 2.701006 CGGAATGTTGCCGTAGCG 59.299 61.111 0.00 0.00 43.66 4.26
153 155 6.646653 TGCATCGGTATCTCAATTGAGTTATC 59.353 38.462 29.80 24.59 42.60 1.75
154 156 6.524734 TGCATCGGTATCTCAATTGAGTTAT 58.475 36.000 29.80 20.90 42.60 1.89
161 163 4.925068 GCTTTTGCATCGGTATCTCAATT 58.075 39.130 0.00 0.00 46.58 2.32
183 185 2.047274 ACACATCCGCACCCTTCG 60.047 61.111 0.00 0.00 0.00 3.79
188 190 1.599518 TGTTCCACACATCCGCACC 60.600 57.895 0.00 0.00 0.00 5.01
209 211 2.636830 GGATCACACCACCATCTCTTG 58.363 52.381 0.00 0.00 0.00 3.02
261 263 1.843753 CGTGCACGTTCCTTGTTTTTC 59.156 47.619 30.50 0.00 34.11 2.29
262 264 1.469308 TCGTGCACGTTCCTTGTTTTT 59.531 42.857 35.74 0.00 40.80 1.94
268 270 1.088306 TTGTTTCGTGCACGTTCCTT 58.912 45.000 35.74 0.00 40.80 3.36
290 292 1.586154 CCCGTGTTTGCTCCATGACC 61.586 60.000 0.00 0.00 0.00 4.02
292 294 1.303236 CCCCGTGTTTGCTCCATGA 60.303 57.895 0.00 0.00 0.00 3.07
293 295 1.178534 AACCCCGTGTTTGCTCCATG 61.179 55.000 0.00 0.00 31.47 3.66
294 296 0.893727 GAACCCCGTGTTTGCTCCAT 60.894 55.000 0.00 0.00 37.29 3.41
295 297 1.527380 GAACCCCGTGTTTGCTCCA 60.527 57.895 0.00 0.00 37.29 3.86
297 299 0.521735 GATGAACCCCGTGTTTGCTC 59.478 55.000 0.00 0.00 37.29 4.26
298 300 0.110486 AGATGAACCCCGTGTTTGCT 59.890 50.000 0.00 0.00 37.29 3.91
309 311 5.643348 TGTTGTGTGATGTATGAGATGAACC 59.357 40.000 0.00 0.00 0.00 3.62
312 314 6.256321 CGAATGTTGTGTGATGTATGAGATGA 59.744 38.462 0.00 0.00 0.00 2.92
347 349 3.006644 GGAAGGTATAACCCCGAGATGAC 59.993 52.174 0.00 0.00 39.75 3.06
349 351 2.969950 TGGAAGGTATAACCCCGAGATG 59.030 50.000 0.00 0.00 39.75 2.90
355 357 2.092049 CACCCTTGGAAGGTATAACCCC 60.092 54.545 4.72 0.00 44.98 4.95
378 380 3.519973 AACCCGAACCGTCCCGAAC 62.520 63.158 0.00 0.00 0.00 3.95
398 400 2.481449 GCGAGAATGACTACGTCCCATT 60.481 50.000 8.96 8.96 33.66 3.16
407 409 1.596260 CTACCGTCGCGAGAATGACTA 59.404 52.381 10.24 0.00 45.01 2.59
418 420 0.807496 ACTACTTCCACTACCGTCGC 59.193 55.000 0.00 0.00 0.00 5.19
420 422 2.165998 ACCACTACTTCCACTACCGTC 58.834 52.381 0.00 0.00 0.00 4.79
424 426 5.909621 TCATGTACCACTACTTCCACTAC 57.090 43.478 0.00 0.00 0.00 2.73
430 432 4.142227 ACCGTCATCATGTACCACTACTTC 60.142 45.833 0.00 0.00 0.00 3.01
444 446 3.945921 CTCAAGTACCTCTACCGTCATCA 59.054 47.826 0.00 0.00 0.00 3.07
447 449 2.306805 TCCTCAAGTACCTCTACCGTCA 59.693 50.000 0.00 0.00 0.00 4.35
456 458 3.103080 ACTCGGATTCCTCAAGTACCT 57.897 47.619 0.30 0.00 0.00 3.08
457 459 3.447944 AGAACTCGGATTCCTCAAGTACC 59.552 47.826 0.30 0.00 0.00 3.34
458 460 4.722361 AGAACTCGGATTCCTCAAGTAC 57.278 45.455 0.30 0.00 0.00 2.73
466 468 2.781681 TCCCAAAGAACTCGGATTCC 57.218 50.000 0.00 0.00 0.00 3.01
473 475 6.424032 AGTACCCAATTATCCCAAAGAACTC 58.576 40.000 0.00 0.00 0.00 3.01
481 483 3.775866 TGAACGAGTACCCAATTATCCCA 59.224 43.478 0.00 0.00 0.00 4.37
485 487 6.177610 ACAACATGAACGAGTACCCAATTAT 58.822 36.000 0.00 0.00 0.00 1.28
493 495 4.470462 ACGACTACAACATGAACGAGTAC 58.530 43.478 0.00 0.00 0.00 2.73
494 496 4.754372 ACGACTACAACATGAACGAGTA 57.246 40.909 0.00 0.00 0.00 2.59
495 497 3.637998 ACGACTACAACATGAACGAGT 57.362 42.857 0.00 0.00 0.00 4.18
496 498 4.469552 TGTACGACTACAACATGAACGAG 58.530 43.478 0.00 0.00 29.36 4.18
497 499 4.486574 TGTACGACTACAACATGAACGA 57.513 40.909 0.00 0.00 29.36 3.85
502 504 4.031314 CGAACCATGTACGACTACAACATG 59.969 45.833 7.52 7.52 46.44 3.21
503 505 4.171005 CGAACCATGTACGACTACAACAT 58.829 43.478 0.00 0.00 36.43 2.71
504 506 3.004629 ACGAACCATGTACGACTACAACA 59.995 43.478 9.64 0.00 36.43 3.33
517 519 3.681855 CACTAGACGTCTACGAACCATG 58.318 50.000 21.25 11.34 43.02 3.66
534 536 1.382009 TACCTCCATGGGCGCACTA 60.382 57.895 12.74 0.00 41.11 2.74
618 620 2.238646 TGCCAAGTACAGGGATAACCAG 59.761 50.000 6.98 0.00 43.89 4.00
619 621 2.270858 TGCCAAGTACAGGGATAACCA 58.729 47.619 6.98 0.00 43.89 3.67
643 645 2.858745 ACCAATGACAAGTACCACACC 58.141 47.619 0.00 0.00 0.00 4.16
660 662 0.892755 ATCGCCAAGTTCGACTACCA 59.107 50.000 0.00 0.00 38.88 3.25
662 664 1.557651 GGATCGCCAAGTTCGACTAC 58.442 55.000 0.00 0.00 38.88 2.73
676 678 1.067565 CCATGTACCATCTCCGGATCG 60.068 57.143 3.57 0.00 0.00 3.69
683 685 2.224281 TGGATTCGCCATGTACCATCTC 60.224 50.000 0.00 0.00 43.33 2.75
697 699 4.570772 CCCATGTACAACTACTTGGATTCG 59.429 45.833 11.68 0.00 45.25 3.34
711 713 3.007506 CCACTACTGTTGACCCATGTACA 59.992 47.826 0.00 0.00 0.00 2.90
712 714 3.259876 TCCACTACTGTTGACCCATGTAC 59.740 47.826 0.00 0.00 0.00 2.90
717 719 2.404559 AGTTCCACTACTGTTGACCCA 58.595 47.619 0.00 0.00 0.00 4.51
726 728 2.633481 GACCACCTCAAGTTCCACTACT 59.367 50.000 0.00 0.00 0.00 2.57
753 755 3.118454 CAACGCCGCAAGTCCGAT 61.118 61.111 0.00 0.00 34.79 4.18
756 758 3.723348 GTCCAACGCCGCAAGTCC 61.723 66.667 0.00 0.00 0.00 3.85
763 765 0.110238 CATGTTTCTGTCCAACGCCG 60.110 55.000 0.00 0.00 0.00 6.46
771 773 3.476552 TGAACCTCACCATGTTTCTGTC 58.523 45.455 0.00 0.00 0.00 3.51
773 775 2.227388 GCTGAACCTCACCATGTTTCTG 59.773 50.000 0.00 0.00 0.00 3.02
784 786 0.835971 TGGGTAGCAGCTGAACCTCA 60.836 55.000 27.92 22.55 33.59 3.86
806 809 1.672881 GAGCCTCGTTTTCATCATGGG 59.327 52.381 0.00 0.00 0.00 4.00
813 816 2.358247 GCCCGAGCCTCGTTTTCA 60.358 61.111 13.83 0.00 38.40 2.69
839 842 3.756727 GCCCCTGCTTGCTGCTTC 61.757 66.667 0.00 0.00 43.37 3.86
869 872 2.730094 CCACTTGCAAGCCACCAC 59.270 61.111 26.27 0.00 0.00 4.16
884 887 2.672651 CAGCACCGATGGTTGCCA 60.673 61.111 0.00 0.00 38.19 4.92
926 929 1.546476 CCGCCATATACTCCTCTCACC 59.454 57.143 0.00 0.00 0.00 4.02
934 937 0.969894 AGTCTGGCCGCCATATACTC 59.030 55.000 13.86 0.45 30.82 2.59
937 940 1.893137 CTGTAGTCTGGCCGCCATATA 59.107 52.381 13.86 3.42 30.82 0.86
938 941 0.681733 CTGTAGTCTGGCCGCCATAT 59.318 55.000 13.86 4.46 30.82 1.78
939 942 2.028125 GCTGTAGTCTGGCCGCCATA 62.028 60.000 13.86 2.18 30.82 2.74
1023 1026 3.910784 TTCTTCCCCTACCCCGCGT 62.911 63.158 4.92 0.00 0.00 6.01
1054 1057 3.842923 ACCAGGAGCTCGCCATCG 61.843 66.667 7.83 0.00 0.00 3.84
1064 1067 4.767255 GGCGAGCACCACCAGGAG 62.767 72.222 0.00 0.00 38.69 3.69
1086 1089 2.997315 TCCTCCTCGCCACCACTG 60.997 66.667 0.00 0.00 0.00 3.66
1088 1091 3.775654 CCTCCTCCTCGCCACCAC 61.776 72.222 0.00 0.00 0.00 4.16
1106 1109 2.967946 GCCTTTAGCCACCCGAGGT 61.968 63.158 0.00 0.00 35.62 3.85
1137 1140 2.265467 TTTGCTCCCTACATCGCCCC 62.265 60.000 0.00 0.00 0.00 5.80
1142 1145 3.084786 AGCTGTTTTTGCTCCCTACATC 58.915 45.455 0.00 0.00 35.67 3.06
1218 1221 1.302511 ACCGAAACTTGCATCGCCT 60.303 52.632 1.89 0.00 37.73 5.52
1224 1227 1.837538 GCGCTACACCGAAACTTGCA 61.838 55.000 0.00 0.00 0.00 4.08
1225 1228 1.154469 GCGCTACACCGAAACTTGC 60.154 57.895 0.00 0.00 0.00 4.01
1261 1264 3.625897 CCGCACCACCAGACCTCA 61.626 66.667 0.00 0.00 0.00 3.86
1303 1306 1.696965 CCATCAATCCCCCTCCTCTCA 60.697 57.143 0.00 0.00 0.00 3.27
1311 1314 1.846973 GTCTCCCCATCAATCCCCC 59.153 63.158 0.00 0.00 0.00 5.40
1324 1327 3.626924 ACTGCCACACCCGTCTCC 61.627 66.667 0.00 0.00 0.00 3.71
1341 1344 1.296392 CCTCTCCATCCGTGCAACA 59.704 57.895 0.00 0.00 35.74 3.33
1343 1346 1.918293 ACCCTCTCCATCCGTGCAA 60.918 57.895 0.00 0.00 0.00 4.08
1352 1355 2.711547 TCTCTCGATATCACCCTCTCCA 59.288 50.000 3.12 0.00 0.00 3.86
1364 1367 2.289756 CCGATCCACCTCTCTCTCGATA 60.290 54.545 0.00 0.00 0.00 2.92
1375 1379 1.995626 CCAGGAACCCGATCCACCT 60.996 63.158 4.95 0.00 42.27 4.00
1378 1382 3.781307 CGCCAGGAACCCGATCCA 61.781 66.667 0.00 0.00 42.27 3.41
1387 1391 1.306312 TAACCCTAGCCGCCAGGAA 60.306 57.895 6.40 0.00 41.02 3.36
1459 1463 0.338120 AGAGAGAGCCCAACTAGCCT 59.662 55.000 0.00 0.00 0.00 4.58
1464 1468 1.640670 AGAGAGAGAGAGAGCCCAACT 59.359 52.381 0.00 0.00 0.00 3.16
1471 1475 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1472 1476 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1477 1481 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1559 1574 1.969923 CCCCTTGCACAAATCCTTTCA 59.030 47.619 0.00 0.00 0.00 2.69
1581 1598 9.646336 CGTATTTTTATGAGTTCGGGAAAATAG 57.354 33.333 0.00 0.00 32.69 1.73
1640 1671 9.474920 CAACCTGTGCAAATTTATTTTCTCTAA 57.525 29.630 0.00 0.00 0.00 2.10
1725 1758 5.352293 TGTGTGAGATCATTTCCTCAAATCG 59.648 40.000 0.00 0.00 40.64 3.34
1752 1785 3.507162 ATCCGCCCATAAATCACATCA 57.493 42.857 0.00 0.00 0.00 3.07
1838 1874 5.266788 TCCGACTAAACTTCCTATCCTTCA 58.733 41.667 0.00 0.00 0.00 3.02
1854 1908 8.118976 TCTTCAACTCTTCTTTTATCCGACTA 57.881 34.615 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.