Multiple sequence alignment - TraesCS7A01G255700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G255700 chr7A 100.000 2789 0 0 1 2789 243693600 243696388 0.000000e+00 5151.0
1 TraesCS7A01G255700 chr7D 93.558 1304 51 18 504 1795 230941292 230942574 0.000000e+00 1912.0
2 TraesCS7A01G255700 chr7D 92.457 464 23 3 47 498 56625881 56626344 0.000000e+00 652.0
3 TraesCS7A01G255700 chr7D 86.403 581 32 24 1796 2342 230942657 230943224 2.390000e-165 592.0
4 TraesCS7A01G255700 chr7D 86.944 337 25 9 2329 2653 230943240 230943569 7.340000e-96 361.0
5 TraesCS7A01G255700 chr7D 93.443 61 1 3 1 60 553227621 553227563 1.380000e-13 87.9
6 TraesCS7A01G255700 chr7B 94.301 1158 39 10 648 1795 202359115 202360255 0.000000e+00 1748.0
7 TraesCS7A01G255700 chr7B 86.502 889 53 37 1796 2650 202360338 202361193 0.000000e+00 915.0
8 TraesCS7A01G255700 chr5A 93.103 464 20 1 47 498 673514146 673514609 0.000000e+00 669.0
9 TraesCS7A01G255700 chr5A 75.977 512 113 6 1073 1582 488038542 488039045 3.560000e-64 255.0
10 TraesCS7A01G255700 chr1D 92.672 464 22 3 47 498 256547634 256547171 0.000000e+00 658.0
11 TraesCS7A01G255700 chr1D 90.435 460 30 6 47 494 262524614 262525071 6.650000e-166 593.0
12 TraesCS7A01G255700 chr4D 92.457 464 23 3 47 498 148421027 148421490 0.000000e+00 652.0
13 TraesCS7A01G255700 chr4D 90.254 472 30 10 47 505 383790820 383790352 1.110000e-168 603.0
14 TraesCS7A01G255700 chr6A 91.810 464 26 1 47 498 536018437 536018900 1.090000e-178 636.0
15 TraesCS7A01G255700 chr3D 91.810 464 26 3 47 498 67068628 67068165 1.090000e-178 636.0
16 TraesCS7A01G255700 chr3D 87.957 465 42 5 47 498 207647117 207646654 1.140000e-148 536.0
17 TraesCS7A01G255700 chr5D 75.828 513 112 7 1073 1582 386209869 386210372 1.660000e-62 250.0
18 TraesCS7A01G255700 chr2B 96.429 56 1 1 1 55 637188827 637188882 1.060000e-14 91.6
19 TraesCS7A01G255700 chr4A 98.039 51 1 0 1 51 134517877 134517827 3.830000e-14 89.8
20 TraesCS7A01G255700 chr3B 93.333 60 2 2 1 58 550759336 550759277 1.380000e-13 87.9
21 TraesCS7A01G255700 chr3B 94.643 56 2 1 1 55 647658574 647658629 4.950000e-13 86.1
22 TraesCS7A01G255700 chr2A 94.737 57 2 1 1 56 562910901 562910957 1.380000e-13 87.9
23 TraesCS7A01G255700 chr2A 94.643 56 2 1 1 55 166069374 166069319 4.950000e-13 86.1
24 TraesCS7A01G255700 chr1A 97.917 48 1 0 1 48 578810891 578810938 1.780000e-12 84.2
25 TraesCS7A01G255700 chr1B 87.143 70 7 2 1 68 426516034 426516103 8.280000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G255700 chr7A 243693600 243696388 2788 False 5151.0 5151 100.000000 1 2789 1 chr7A.!!$F1 2788
1 TraesCS7A01G255700 chr7D 230941292 230943569 2277 False 955.0 1912 88.968333 504 2653 3 chr7D.!!$F2 2149
2 TraesCS7A01G255700 chr7B 202359115 202361193 2078 False 1331.5 1748 90.401500 648 2650 2 chr7B.!!$F1 2002
3 TraesCS7A01G255700 chr5A 488038542 488039045 503 False 255.0 255 75.977000 1073 1582 1 chr5A.!!$F1 509
4 TraesCS7A01G255700 chr5D 386209869 386210372 503 False 250.0 250 75.828000 1073 1582 1 chr5D.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.036105 AATGCCACATCGACAGCTGA 60.036 50.0 23.35 0.00 0.00 4.26 F
578 579 0.318762 GCCTAATACTCCGAGCTGGG 59.681 60.0 8.78 8.78 38.76 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1355 1.135199 ACGTAGCCGGTGATGTTGTAG 60.135 52.381 1.90 0.00 38.78 2.74 R
2561 2754 0.106708 ATGAGCACGTGAACACACCT 59.893 50.000 22.23 4.25 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.179468 TAGTTGCCTATTCACCCCGC 59.821 55.000 0.00 0.00 0.00 6.13
20 21 1.077716 GTTGCCTATTCACCCCGCT 60.078 57.895 0.00 0.00 0.00 5.52
21 22 1.095807 GTTGCCTATTCACCCCGCTC 61.096 60.000 0.00 0.00 0.00 5.03
22 23 1.271840 TTGCCTATTCACCCCGCTCT 61.272 55.000 0.00 0.00 0.00 4.09
23 24 0.397957 TGCCTATTCACCCCGCTCTA 60.398 55.000 0.00 0.00 0.00 2.43
24 25 0.318762 GCCTATTCACCCCGCTCTAG 59.681 60.000 0.00 0.00 0.00 2.43
25 26 1.705873 CCTATTCACCCCGCTCTAGT 58.294 55.000 0.00 0.00 0.00 2.57
26 27 1.614413 CCTATTCACCCCGCTCTAGTC 59.386 57.143 0.00 0.00 0.00 2.59
27 28 2.307768 CTATTCACCCCGCTCTAGTCA 58.692 52.381 0.00 0.00 0.00 3.41
28 29 1.568504 ATTCACCCCGCTCTAGTCAA 58.431 50.000 0.00 0.00 0.00 3.18
29 30 0.606604 TTCACCCCGCTCTAGTCAAC 59.393 55.000 0.00 0.00 0.00 3.18
30 31 1.218316 CACCCCGCTCTAGTCAACC 59.782 63.158 0.00 0.00 0.00 3.77
31 32 1.229082 ACCCCGCTCTAGTCAACCA 60.229 57.895 0.00 0.00 0.00 3.67
32 33 0.617820 ACCCCGCTCTAGTCAACCAT 60.618 55.000 0.00 0.00 0.00 3.55
33 34 1.342674 ACCCCGCTCTAGTCAACCATA 60.343 52.381 0.00 0.00 0.00 2.74
34 35 1.971357 CCCCGCTCTAGTCAACCATAT 59.029 52.381 0.00 0.00 0.00 1.78
35 36 2.028930 CCCCGCTCTAGTCAACCATATC 60.029 54.545 0.00 0.00 0.00 1.63
36 37 2.351835 CCCGCTCTAGTCAACCATATCG 60.352 54.545 0.00 0.00 0.00 2.92
37 38 2.552743 CCGCTCTAGTCAACCATATCGA 59.447 50.000 0.00 0.00 0.00 3.59
38 39 3.191581 CCGCTCTAGTCAACCATATCGAT 59.808 47.826 2.16 2.16 0.00 3.59
39 40 4.407818 CGCTCTAGTCAACCATATCGATC 58.592 47.826 0.00 0.00 0.00 3.69
40 41 4.673061 CGCTCTAGTCAACCATATCGATCC 60.673 50.000 0.00 0.00 0.00 3.36
41 42 4.461081 GCTCTAGTCAACCATATCGATCCT 59.539 45.833 0.00 0.00 0.00 3.24
42 43 5.047660 GCTCTAGTCAACCATATCGATCCTT 60.048 44.000 0.00 0.00 0.00 3.36
43 44 6.517529 GCTCTAGTCAACCATATCGATCCTTT 60.518 42.308 0.00 0.00 0.00 3.11
44 45 6.982852 TCTAGTCAACCATATCGATCCTTTC 58.017 40.000 0.00 0.00 0.00 2.62
45 46 5.614324 AGTCAACCATATCGATCCTTTCA 57.386 39.130 0.00 0.00 0.00 2.69
46 47 5.360591 AGTCAACCATATCGATCCTTTCAC 58.639 41.667 0.00 0.00 0.00 3.18
47 48 4.511826 GTCAACCATATCGATCCTTTCACC 59.488 45.833 0.00 0.00 0.00 4.02
48 49 3.386768 ACCATATCGATCCTTTCACCG 57.613 47.619 0.00 0.00 0.00 4.94
49 50 2.069273 CCATATCGATCCTTTCACCGC 58.931 52.381 0.00 0.00 0.00 5.68
50 51 2.069273 CATATCGATCCTTTCACCGCC 58.931 52.381 0.00 0.00 0.00 6.13
51 52 0.391597 TATCGATCCTTTCACCGCCC 59.608 55.000 0.00 0.00 0.00 6.13
52 53 2.325393 ATCGATCCTTTCACCGCCCC 62.325 60.000 0.00 0.00 0.00 5.80
53 54 2.998949 GATCCTTTCACCGCCCCT 59.001 61.111 0.00 0.00 0.00 4.79
54 55 1.153147 GATCCTTTCACCGCCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
55 56 1.616628 ATCCTTTCACCGCCCCTCT 60.617 57.895 0.00 0.00 0.00 3.69
56 57 1.208165 ATCCTTTCACCGCCCCTCTT 61.208 55.000 0.00 0.00 0.00 2.85
57 58 1.675641 CCTTTCACCGCCCCTCTTG 60.676 63.158 0.00 0.00 0.00 3.02
58 59 2.282180 TTTCACCGCCCCTCTTGC 60.282 61.111 0.00 0.00 0.00 4.01
59 60 3.860930 TTTCACCGCCCCTCTTGCC 62.861 63.158 0.00 0.00 0.00 4.52
85 86 3.733960 CGTGAGTCGCCGTCCAGA 61.734 66.667 0.00 0.00 0.00 3.86
86 87 2.885861 GTGAGTCGCCGTCCAGAT 59.114 61.111 0.00 0.00 0.00 2.90
87 88 1.226717 GTGAGTCGCCGTCCAGATC 60.227 63.158 0.00 0.00 0.00 2.75
88 89 2.413765 GAGTCGCCGTCCAGATCC 59.586 66.667 0.00 0.00 0.00 3.36
89 90 3.471244 GAGTCGCCGTCCAGATCCG 62.471 68.421 0.00 0.00 0.00 4.18
90 91 3.823330 GTCGCCGTCCAGATCCGT 61.823 66.667 0.00 0.00 0.00 4.69
91 92 3.515286 TCGCCGTCCAGATCCGTC 61.515 66.667 0.00 0.00 0.00 4.79
92 93 4.907034 CGCCGTCCAGATCCGTCG 62.907 72.222 0.00 0.00 0.00 5.12
93 94 4.570663 GCCGTCCAGATCCGTCGG 62.571 72.222 4.39 4.39 43.37 4.79
94 95 3.138798 CCGTCCAGATCCGTCGGT 61.139 66.667 11.88 0.00 36.99 4.69
95 96 2.707849 CCGTCCAGATCCGTCGGTT 61.708 63.158 11.88 2.07 36.99 4.44
96 97 1.226603 CGTCCAGATCCGTCGGTTC 60.227 63.158 11.88 12.78 0.00 3.62
97 98 1.888018 GTCCAGATCCGTCGGTTCA 59.112 57.895 21.43 0.00 0.00 3.18
98 99 0.458025 GTCCAGATCCGTCGGTTCAC 60.458 60.000 21.43 9.59 0.00 3.18
99 100 1.516386 CCAGATCCGTCGGTTCACG 60.516 63.158 21.43 12.98 46.11 4.35
100 101 2.158959 CAGATCCGTCGGTTCACGC 61.159 63.158 21.43 0.00 43.86 5.34
101 102 3.245315 GATCCGTCGGTTCACGCG 61.245 66.667 15.94 3.53 43.86 6.01
148 149 4.479993 CTGCCTCCCCTGCTTCGG 62.480 72.222 0.00 0.00 0.00 4.30
151 152 4.479993 CCTCCCCTGCTTCGGCTG 62.480 72.222 0.00 0.00 42.37 4.85
155 156 3.437795 CCCTGCTTCGGCTGCAAG 61.438 66.667 0.50 0.00 40.13 4.01
201 202 4.929707 GGGCGGCGGTTATGGGAG 62.930 72.222 9.78 0.00 0.00 4.30
202 203 4.929707 GGCGGCGGTTATGGGAGG 62.930 72.222 9.78 0.00 0.00 4.30
205 206 3.857038 GGCGGTTATGGGAGGCGA 61.857 66.667 0.00 0.00 0.00 5.54
206 207 2.188469 GCGGTTATGGGAGGCGAA 59.812 61.111 0.00 0.00 0.00 4.70
207 208 1.887707 GCGGTTATGGGAGGCGAAG 60.888 63.158 0.00 0.00 0.00 3.79
208 209 1.227556 CGGTTATGGGAGGCGAAGG 60.228 63.158 0.00 0.00 0.00 3.46
209 210 1.682451 CGGTTATGGGAGGCGAAGGA 61.682 60.000 0.00 0.00 0.00 3.36
210 211 0.106894 GGTTATGGGAGGCGAAGGAG 59.893 60.000 0.00 0.00 0.00 3.69
211 212 0.533085 GTTATGGGAGGCGAAGGAGC 60.533 60.000 0.00 0.00 0.00 4.70
212 213 0.691078 TTATGGGAGGCGAAGGAGCT 60.691 55.000 0.00 0.00 37.29 4.09
213 214 1.115930 TATGGGAGGCGAAGGAGCTC 61.116 60.000 4.71 4.71 37.29 4.09
214 215 4.214327 GGGAGGCGAAGGAGCTCG 62.214 72.222 7.83 0.00 41.84 5.03
215 216 4.214327 GGAGGCGAAGGAGCTCGG 62.214 72.222 7.83 0.00 39.27 4.63
216 217 4.214327 GAGGCGAAGGAGCTCGGG 62.214 72.222 7.83 0.00 39.27 5.14
238 239 3.024356 AGGGGCTCCTCCTCTCGA 61.024 66.667 0.00 0.00 44.33 4.04
239 240 2.200092 GGGGCTCCTCCTCTCGAT 59.800 66.667 0.00 0.00 34.39 3.59
240 241 1.906333 GGGGCTCCTCCTCTCGATC 60.906 68.421 0.00 0.00 34.39 3.69
241 242 1.152830 GGGCTCCTCCTCTCGATCT 59.847 63.158 0.00 0.00 34.39 2.75
242 243 0.402504 GGGCTCCTCCTCTCGATCTA 59.597 60.000 0.00 0.00 34.39 1.98
243 244 1.613255 GGGCTCCTCCTCTCGATCTAG 60.613 61.905 0.00 0.00 34.39 2.43
244 245 1.349688 GGCTCCTCCTCTCGATCTAGA 59.650 57.143 0.00 0.00 0.00 2.43
245 246 2.026262 GGCTCCTCCTCTCGATCTAGAT 60.026 54.545 4.47 4.47 0.00 1.98
246 247 3.270877 GCTCCTCCTCTCGATCTAGATC 58.729 54.545 20.93 20.93 34.56 2.75
281 282 2.531206 GTGGAGACGATGAACAGTAGC 58.469 52.381 0.00 0.00 0.00 3.58
282 283 1.132453 TGGAGACGATGAACAGTAGCG 59.868 52.381 0.00 0.00 0.00 4.26
283 284 1.192793 GAGACGATGAACAGTAGCGC 58.807 55.000 0.00 0.00 0.00 5.92
284 285 0.179134 AGACGATGAACAGTAGCGCC 60.179 55.000 2.29 0.00 0.00 6.53
285 286 1.472276 GACGATGAACAGTAGCGCCG 61.472 60.000 2.29 0.00 0.00 6.46
286 287 2.230940 CGATGAACAGTAGCGCCGG 61.231 63.158 2.29 0.00 0.00 6.13
287 288 2.511600 ATGAACAGTAGCGCCGGC 60.512 61.111 19.07 19.07 40.37 6.13
308 309 3.458653 GCAAGGGGCTTTCTGCAA 58.541 55.556 0.00 0.00 45.15 4.08
309 310 1.747774 GCAAGGGGCTTTCTGCAAA 59.252 52.632 0.00 0.00 45.15 3.68
310 311 0.106521 GCAAGGGGCTTTCTGCAAAA 59.893 50.000 0.00 0.00 45.15 2.44
311 312 1.474855 GCAAGGGGCTTTCTGCAAAAA 60.475 47.619 0.00 0.00 45.15 1.94
312 313 2.486918 CAAGGGGCTTTCTGCAAAAAG 58.513 47.619 8.20 8.20 45.15 2.27
313 314 2.086610 AGGGGCTTTCTGCAAAAAGA 57.913 45.000 16.70 0.00 45.15 2.52
314 315 2.397597 AGGGGCTTTCTGCAAAAAGAA 58.602 42.857 16.70 0.00 45.15 2.52
315 316 2.974794 AGGGGCTTTCTGCAAAAAGAAT 59.025 40.909 16.70 0.00 45.15 2.40
316 317 3.069289 GGGGCTTTCTGCAAAAAGAATG 58.931 45.455 16.70 5.91 45.15 2.67
318 319 3.800929 GCTTTCTGCAAAAAGAATGCC 57.199 42.857 16.70 0.00 45.05 4.40
319 320 3.132925 GCTTTCTGCAAAAAGAATGCCA 58.867 40.909 16.70 0.00 45.05 4.92
320 321 3.059393 GCTTTCTGCAAAAAGAATGCCAC 60.059 43.478 16.70 0.00 45.05 5.01
321 322 3.815856 TTCTGCAAAAAGAATGCCACA 57.184 38.095 0.00 0.00 43.16 4.17
322 323 4.339872 TTCTGCAAAAAGAATGCCACAT 57.660 36.364 0.00 0.00 43.16 3.21
323 324 3.916761 TCTGCAAAAAGAATGCCACATC 58.083 40.909 0.00 0.00 43.16 3.06
324 325 2.664568 CTGCAAAAAGAATGCCACATCG 59.335 45.455 0.00 0.00 43.16 3.84
325 326 2.295629 TGCAAAAAGAATGCCACATCGA 59.704 40.909 0.00 0.00 43.16 3.59
326 327 2.663119 GCAAAAAGAATGCCACATCGAC 59.337 45.455 0.00 0.00 37.85 4.20
327 328 3.856638 GCAAAAAGAATGCCACATCGACA 60.857 43.478 0.00 0.00 37.85 4.35
328 329 3.837213 AAAAGAATGCCACATCGACAG 57.163 42.857 0.00 0.00 0.00 3.51
329 330 1.089920 AAGAATGCCACATCGACAGC 58.910 50.000 0.00 0.00 0.00 4.40
330 331 0.251354 AGAATGCCACATCGACAGCT 59.749 50.000 0.00 0.00 0.00 4.24
331 332 0.376152 GAATGCCACATCGACAGCTG 59.624 55.000 13.48 13.48 0.00 4.24
332 333 0.036105 AATGCCACATCGACAGCTGA 60.036 50.000 23.35 0.00 0.00 4.26
333 334 0.742281 ATGCCACATCGACAGCTGAC 60.742 55.000 23.35 14.26 0.00 3.51
334 335 1.374631 GCCACATCGACAGCTGACA 60.375 57.895 23.35 5.75 0.00 3.58
335 336 0.742281 GCCACATCGACAGCTGACAT 60.742 55.000 23.35 7.94 0.00 3.06
336 337 1.004595 CCACATCGACAGCTGACATG 58.995 55.000 23.35 20.39 0.00 3.21
337 338 0.372679 CACATCGACAGCTGACATGC 59.627 55.000 23.35 3.06 0.00 4.06
338 339 1.080435 ACATCGACAGCTGACATGCG 61.080 55.000 23.35 14.88 38.13 4.73
339 340 1.520120 ATCGACAGCTGACATGCGG 60.520 57.895 23.35 0.82 38.13 5.69
340 341 2.913054 ATCGACAGCTGACATGCGGG 62.913 60.000 23.35 0.03 38.13 6.13
341 342 3.503363 GACAGCTGACATGCGGGC 61.503 66.667 23.35 0.00 38.13 6.13
357 358 4.603946 GCCCCGCCGGTCAGATAC 62.604 72.222 1.90 0.00 0.00 2.24
358 359 3.151710 CCCCGCCGGTCAGATACA 61.152 66.667 1.90 0.00 0.00 2.29
359 360 2.106332 CCCGCCGGTCAGATACAC 59.894 66.667 1.90 0.00 0.00 2.90
360 361 2.106332 CCGCCGGTCAGATACACC 59.894 66.667 1.90 0.00 0.00 4.16
392 393 5.878261 CGTTTATACGCGATTTAGACCTT 57.122 39.130 15.93 0.00 41.41 3.50
393 394 6.264909 CGTTTATACGCGATTTAGACCTTT 57.735 37.500 15.93 0.00 41.41 3.11
394 395 6.699063 CGTTTATACGCGATTTAGACCTTTT 58.301 36.000 15.93 0.00 41.41 2.27
395 396 7.175410 CGTTTATACGCGATTTAGACCTTTTT 58.825 34.615 15.93 0.00 41.41 1.94
396 397 7.161418 CGTTTATACGCGATTTAGACCTTTTTG 59.839 37.037 15.93 0.00 41.41 2.44
397 398 7.599630 TTATACGCGATTTAGACCTTTTTGT 57.400 32.000 15.93 0.00 0.00 2.83
398 399 8.700722 TTATACGCGATTTAGACCTTTTTGTA 57.299 30.769 15.93 0.00 0.00 2.41
399 400 5.927954 ACGCGATTTAGACCTTTTTGTAA 57.072 34.783 15.93 0.00 0.00 2.41
400 401 5.682869 ACGCGATTTAGACCTTTTTGTAAC 58.317 37.500 15.93 0.00 0.00 2.50
401 402 4.779523 CGCGATTTAGACCTTTTTGTAACG 59.220 41.667 0.00 0.00 0.00 3.18
402 403 5.613142 CGCGATTTAGACCTTTTTGTAACGT 60.613 40.000 0.00 0.00 0.00 3.99
403 404 5.787062 GCGATTTAGACCTTTTTGTAACGTC 59.213 40.000 0.00 0.00 0.00 4.34
404 405 6.347160 GCGATTTAGACCTTTTTGTAACGTCT 60.347 38.462 0.00 0.00 37.54 4.18
405 406 7.148755 GCGATTTAGACCTTTTTGTAACGTCTA 60.149 37.037 0.00 0.00 35.50 2.59
406 407 8.371053 CGATTTAGACCTTTTTGTAACGTCTAG 58.629 37.037 0.00 0.00 37.36 2.43
407 408 7.412137 TTTAGACCTTTTTGTAACGTCTAGC 57.588 36.000 0.00 0.00 37.36 3.42
408 409 4.313282 AGACCTTTTTGTAACGTCTAGCC 58.687 43.478 0.00 0.00 32.15 3.93
409 410 3.405831 ACCTTTTTGTAACGTCTAGCCC 58.594 45.455 0.00 0.00 0.00 5.19
410 411 2.745821 CCTTTTTGTAACGTCTAGCCCC 59.254 50.000 0.00 0.00 0.00 5.80
411 412 3.404899 CTTTTTGTAACGTCTAGCCCCA 58.595 45.455 0.00 0.00 0.00 4.96
412 413 2.754946 TTTGTAACGTCTAGCCCCAG 57.245 50.000 0.00 0.00 0.00 4.45
413 414 1.927487 TTGTAACGTCTAGCCCCAGA 58.073 50.000 0.00 0.00 0.00 3.86
414 415 1.180029 TGTAACGTCTAGCCCCAGAC 58.820 55.000 0.00 1.55 41.33 3.51
415 416 1.272313 TGTAACGTCTAGCCCCAGACT 60.272 52.381 8.56 0.00 42.36 3.24
416 417 1.823610 GTAACGTCTAGCCCCAGACTT 59.176 52.381 8.56 5.46 42.36 3.01
417 418 2.226962 AACGTCTAGCCCCAGACTTA 57.773 50.000 8.56 0.00 42.36 2.24
418 419 1.765230 ACGTCTAGCCCCAGACTTAG 58.235 55.000 8.56 0.00 42.36 2.18
419 420 1.005687 ACGTCTAGCCCCAGACTTAGT 59.994 52.381 8.56 0.00 42.36 2.24
420 421 2.240667 ACGTCTAGCCCCAGACTTAGTA 59.759 50.000 8.56 0.00 42.36 1.82
421 422 2.617774 CGTCTAGCCCCAGACTTAGTAC 59.382 54.545 8.56 0.00 42.36 2.73
422 423 3.684981 CGTCTAGCCCCAGACTTAGTACT 60.685 52.174 0.00 0.00 42.36 2.73
423 424 3.633065 GTCTAGCCCCAGACTTAGTACTG 59.367 52.174 5.39 5.31 41.49 2.74
424 425 2.921834 AGCCCCAGACTTAGTACTGA 57.078 50.000 5.39 0.00 36.38 3.41
425 426 2.458620 AGCCCCAGACTTAGTACTGAC 58.541 52.381 5.39 0.00 36.38 3.51
426 427 2.176889 GCCCCAGACTTAGTACTGACA 58.823 52.381 5.39 0.00 36.38 3.58
427 428 2.094130 GCCCCAGACTTAGTACTGACAC 60.094 54.545 5.39 0.00 36.38 3.67
428 429 3.162666 CCCCAGACTTAGTACTGACACA 58.837 50.000 5.39 0.00 36.38 3.72
429 430 3.769844 CCCCAGACTTAGTACTGACACAT 59.230 47.826 5.39 0.00 36.38 3.21
430 431 4.954202 CCCCAGACTTAGTACTGACACATA 59.046 45.833 5.39 0.00 36.38 2.29
431 432 5.421056 CCCCAGACTTAGTACTGACACATAA 59.579 44.000 5.39 0.00 36.38 1.90
432 433 6.070995 CCCCAGACTTAGTACTGACACATAAA 60.071 42.308 5.39 0.00 36.38 1.40
433 434 7.383687 CCCAGACTTAGTACTGACACATAAAA 58.616 38.462 5.39 0.00 36.38 1.52
434 435 7.876068 CCCAGACTTAGTACTGACACATAAAAA 59.124 37.037 5.39 0.00 36.38 1.94
435 436 9.436957 CCAGACTTAGTACTGACACATAAAAAT 57.563 33.333 5.39 0.00 36.38 1.82
458 459 9.807649 AAATTATCAAACTTGATACCAATCTGC 57.192 29.630 10.92 0.00 46.58 4.26
459 460 8.757982 ATTATCAAACTTGATACCAATCTGCT 57.242 30.769 10.92 0.00 46.58 4.24
460 461 8.579850 TTATCAAACTTGATACCAATCTGCTT 57.420 30.769 10.92 0.00 46.58 3.91
461 462 6.500684 TCAAACTTGATACCAATCTGCTTC 57.499 37.500 0.00 0.00 32.93 3.86
462 463 5.415701 TCAAACTTGATACCAATCTGCTTCC 59.584 40.000 0.00 0.00 32.93 3.46
463 464 4.574674 ACTTGATACCAATCTGCTTCCA 57.425 40.909 0.00 0.00 32.93 3.53
464 465 4.922206 ACTTGATACCAATCTGCTTCCAA 58.078 39.130 0.00 0.00 32.93 3.53
465 466 5.513233 ACTTGATACCAATCTGCTTCCAAT 58.487 37.500 0.00 0.00 32.93 3.16
466 467 5.359009 ACTTGATACCAATCTGCTTCCAATG 59.641 40.000 0.00 0.00 32.93 2.82
467 468 3.633525 TGATACCAATCTGCTTCCAATGC 59.366 43.478 0.00 0.00 32.93 3.56
468 469 2.226962 ACCAATCTGCTTCCAATGCT 57.773 45.000 0.00 0.00 0.00 3.79
469 470 2.097825 ACCAATCTGCTTCCAATGCTC 58.902 47.619 0.00 0.00 0.00 4.26
470 471 1.407979 CCAATCTGCTTCCAATGCTCC 59.592 52.381 0.00 0.00 0.00 4.70
471 472 2.097036 CAATCTGCTTCCAATGCTCCA 58.903 47.619 0.00 0.00 0.00 3.86
472 473 2.494471 CAATCTGCTTCCAATGCTCCAA 59.506 45.455 0.00 0.00 0.00 3.53
473 474 2.519771 TCTGCTTCCAATGCTCCAAT 57.480 45.000 0.00 0.00 0.00 3.16
474 475 2.811410 TCTGCTTCCAATGCTCCAATT 58.189 42.857 0.00 0.00 0.00 2.32
475 476 2.494471 TCTGCTTCCAATGCTCCAATTG 59.506 45.455 0.00 0.00 37.30 2.32
476 477 2.232941 CTGCTTCCAATGCTCCAATTGT 59.767 45.455 4.43 0.00 36.06 2.71
477 478 2.028839 TGCTTCCAATGCTCCAATTGTG 60.029 45.455 4.43 0.00 36.06 3.33
478 479 2.231964 GCTTCCAATGCTCCAATTGTGA 59.768 45.455 4.43 0.76 36.06 3.58
479 480 3.118884 GCTTCCAATGCTCCAATTGTGAT 60.119 43.478 4.43 0.00 36.06 3.06
480 481 4.098349 GCTTCCAATGCTCCAATTGTGATA 59.902 41.667 4.43 0.00 36.06 2.15
481 482 5.581126 TTCCAATGCTCCAATTGTGATAC 57.419 39.130 4.43 0.00 36.06 2.24
482 483 4.858850 TCCAATGCTCCAATTGTGATACT 58.141 39.130 4.43 0.00 36.06 2.12
483 484 5.263599 TCCAATGCTCCAATTGTGATACTT 58.736 37.500 4.43 0.00 36.06 2.24
484 485 6.422333 TCCAATGCTCCAATTGTGATACTTA 58.578 36.000 4.43 0.00 36.06 2.24
485 486 7.062322 TCCAATGCTCCAATTGTGATACTTAT 58.938 34.615 4.43 0.00 36.06 1.73
486 487 7.013559 TCCAATGCTCCAATTGTGATACTTATG 59.986 37.037 4.43 0.00 36.06 1.90
487 488 7.201848 CCAATGCTCCAATTGTGATACTTATGT 60.202 37.037 4.43 0.00 36.06 2.29
488 489 6.682423 TGCTCCAATTGTGATACTTATGTG 57.318 37.500 4.43 0.00 0.00 3.21
489 490 5.066375 TGCTCCAATTGTGATACTTATGTGC 59.934 40.000 4.43 0.00 0.00 4.57
490 491 5.066375 GCTCCAATTGTGATACTTATGTGCA 59.934 40.000 4.43 0.00 0.00 4.57
491 492 6.404623 GCTCCAATTGTGATACTTATGTGCAA 60.405 38.462 4.43 0.00 0.00 4.08
492 493 7.643569 TCCAATTGTGATACTTATGTGCAAT 57.356 32.000 4.43 0.00 0.00 3.56
493 494 8.065473 TCCAATTGTGATACTTATGTGCAATT 57.935 30.769 4.43 0.00 36.06 2.32
494 495 8.530311 TCCAATTGTGATACTTATGTGCAATTT 58.470 29.630 4.43 0.00 34.23 1.82
495 496 9.800433 CCAATTGTGATACTTATGTGCAATTTA 57.200 29.630 4.43 0.00 34.23 1.40
500 501 9.225436 TGTGATACTTATGTGCAATTTACTTCA 57.775 29.630 0.00 0.00 0.00 3.02
507 508 5.281693 TGTGCAATTTACTTCATCGTCTG 57.718 39.130 0.00 0.00 0.00 3.51
561 562 1.200020 GCACAAAGTACAGACCATGCC 59.800 52.381 0.00 0.00 0.00 4.40
567 568 6.037172 CACAAAGTACAGACCATGCCTAATAC 59.963 42.308 0.00 0.00 0.00 1.89
568 569 6.070194 ACAAAGTACAGACCATGCCTAATACT 60.070 38.462 0.00 0.00 0.00 2.12
569 570 5.793030 AGTACAGACCATGCCTAATACTC 57.207 43.478 0.00 0.00 0.00 2.59
570 571 4.589374 AGTACAGACCATGCCTAATACTCC 59.411 45.833 0.00 0.00 0.00 3.85
571 572 2.365617 ACAGACCATGCCTAATACTCCG 59.634 50.000 0.00 0.00 0.00 4.63
573 574 2.894126 AGACCATGCCTAATACTCCGAG 59.106 50.000 0.00 0.00 0.00 4.63
574 575 1.344763 ACCATGCCTAATACTCCGAGC 59.655 52.381 0.00 0.00 0.00 5.03
575 576 1.620819 CCATGCCTAATACTCCGAGCT 59.379 52.381 0.00 0.00 0.00 4.09
576 577 2.611473 CCATGCCTAATACTCCGAGCTG 60.611 54.545 0.00 0.00 0.00 4.24
577 578 1.040646 TGCCTAATACTCCGAGCTGG 58.959 55.000 0.00 0.00 40.09 4.85
578 579 0.318762 GCCTAATACTCCGAGCTGGG 59.681 60.000 8.78 8.78 38.76 4.45
579 580 1.996798 CCTAATACTCCGAGCTGGGA 58.003 55.000 17.38 17.38 38.76 4.37
586 587 2.990066 CTCCGAGCTGGGAGTAAAAT 57.010 50.000 30.92 0.00 46.97 1.82
587 588 2.827652 CTCCGAGCTGGGAGTAAAATC 58.172 52.381 30.92 0.00 46.97 2.17
588 589 2.168521 CTCCGAGCTGGGAGTAAAATCA 59.831 50.000 30.92 1.94 46.97 2.57
589 590 2.771943 TCCGAGCTGGGAGTAAAATCAT 59.228 45.455 14.28 0.00 38.76 2.45
590 591 3.964688 TCCGAGCTGGGAGTAAAATCATA 59.035 43.478 14.28 0.00 38.76 2.15
636 637 2.154462 CAAGTTCACCACTCACCATCC 58.846 52.381 0.00 0.00 32.94 3.51
705 709 1.011242 CACACGCACACCAAACTCG 60.011 57.895 0.00 0.00 0.00 4.18
712 721 1.598130 ACACCAAACTCGCAGGAGC 60.598 57.895 0.00 0.00 44.48 4.70
735 744 4.990426 CCACAACTCATTTCAACCCATTTC 59.010 41.667 0.00 0.00 0.00 2.17
736 745 5.221501 CCACAACTCATTTCAACCCATTTCT 60.222 40.000 0.00 0.00 0.00 2.52
737 746 6.282930 CACAACTCATTTCAACCCATTTCTT 58.717 36.000 0.00 0.00 0.00 2.52
738 747 7.432869 CACAACTCATTTCAACCCATTTCTTA 58.567 34.615 0.00 0.00 0.00 2.10
739 748 8.090214 CACAACTCATTTCAACCCATTTCTTAT 58.910 33.333 0.00 0.00 0.00 1.73
740 749 8.306761 ACAACTCATTTCAACCCATTTCTTATC 58.693 33.333 0.00 0.00 0.00 1.75
757 766 6.525121 TCTTATCTTTTTATCGCCGACATG 57.475 37.500 0.00 0.00 0.00 3.21
761 770 4.188462 TCTTTTTATCGCCGACATGTCAT 58.812 39.130 24.93 13.24 0.00 3.06
763 772 5.813157 TCTTTTTATCGCCGACATGTCATTA 59.187 36.000 24.93 8.01 0.00 1.90
817 827 4.600111 ACACCTAACCAAATCCAGACCTAA 59.400 41.667 0.00 0.00 0.00 2.69
831 841 3.923461 CAGACCTAAGCAACGAGAGAAAG 59.077 47.826 0.00 0.00 0.00 2.62
843 853 6.198687 CAACGAGAGAAAGCACACATTTAAA 58.801 36.000 0.00 0.00 0.00 1.52
846 856 5.848036 CGAGAGAAAGCACACATTTAAACAG 59.152 40.000 0.00 0.00 0.00 3.16
875 885 7.449086 ACCCACCTAAAATCTTCGAAAATTACA 59.551 33.333 0.00 0.00 0.00 2.41
903 913 3.117625 CCCCACCTCCCCTCTTATAAAAC 60.118 52.174 0.00 0.00 0.00 2.43
904 914 3.117625 CCCACCTCCCCTCTTATAAAACC 60.118 52.174 0.00 0.00 0.00 3.27
943 956 1.536662 ACCCCTCACTGACACTCCC 60.537 63.158 0.00 0.00 0.00 4.30
1053 1070 2.686470 CTCCTGCTCCTCCTGGCA 60.686 66.667 0.00 0.00 36.94 4.92
1877 1981 7.045126 TCGTTTGAAATAAAAGATGGTTGGT 57.955 32.000 0.00 0.00 0.00 3.67
1882 1986 6.904498 TGAAATAAAAGATGGTTGGTGTACG 58.096 36.000 0.00 0.00 0.00 3.67
1883 1987 5.890424 AATAAAAGATGGTTGGTGTACGG 57.110 39.130 0.00 0.00 0.00 4.02
1885 1989 2.762535 AAGATGGTTGGTGTACGGAG 57.237 50.000 0.00 0.00 0.00 4.63
1886 1990 0.249398 AGATGGTTGGTGTACGGAGC 59.751 55.000 0.00 0.00 0.00 4.70
1887 1991 0.249398 GATGGTTGGTGTACGGAGCT 59.751 55.000 0.00 0.00 0.00 4.09
1888 1992 0.036388 ATGGTTGGTGTACGGAGCTG 60.036 55.000 0.00 0.00 0.00 4.24
1890 1994 0.250166 GGTTGGTGTACGGAGCTGTT 60.250 55.000 0.00 0.00 0.00 3.16
1891 1995 0.865769 GTTGGTGTACGGAGCTGTTG 59.134 55.000 0.00 0.00 0.00 3.33
1892 1996 0.466543 TTGGTGTACGGAGCTGTTGT 59.533 50.000 0.00 0.00 0.00 3.32
1893 1997 0.466543 TGGTGTACGGAGCTGTTGTT 59.533 50.000 0.00 0.00 0.00 2.83
1894 1998 1.134340 TGGTGTACGGAGCTGTTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
1895 1999 1.944709 GGTGTACGGAGCTGTTGTTTT 59.055 47.619 0.00 0.00 0.00 2.43
1896 2000 2.356695 GGTGTACGGAGCTGTTGTTTTT 59.643 45.455 0.00 0.00 0.00 1.94
1897 2001 3.560896 GGTGTACGGAGCTGTTGTTTTTA 59.439 43.478 0.00 0.00 0.00 1.52
1898 2002 4.319261 GGTGTACGGAGCTGTTGTTTTTAG 60.319 45.833 0.00 0.00 0.00 1.85
1899 2003 3.810941 TGTACGGAGCTGTTGTTTTTAGG 59.189 43.478 0.00 0.00 0.00 2.69
1900 2004 2.927028 ACGGAGCTGTTGTTTTTAGGT 58.073 42.857 0.00 0.00 0.00 3.08
1901 2005 4.075963 ACGGAGCTGTTGTTTTTAGGTA 57.924 40.909 0.00 0.00 0.00 3.08
1920 2024 6.422776 AGGTATATCGAGCTGTTGTTTTTG 57.577 37.500 0.00 0.00 0.00 2.44
1927 2031 3.303791 CGAGCTGTTGTTTTTGGGTAGAC 60.304 47.826 0.00 0.00 0.00 2.59
1974 2082 4.681942 GCTAGCAGTCGGTGATTATTGTAG 59.318 45.833 10.63 0.00 0.00 2.74
1976 2084 4.433615 AGCAGTCGGTGATTATTGTAGTG 58.566 43.478 0.00 0.00 0.00 2.74
2053 2197 6.878317 TCATCAGAGGAGTATAAGTGTTTGG 58.122 40.000 0.00 0.00 0.00 3.28
2054 2198 6.440647 TCATCAGAGGAGTATAAGTGTTTGGT 59.559 38.462 0.00 0.00 0.00 3.67
2055 2199 7.618117 TCATCAGAGGAGTATAAGTGTTTGGTA 59.382 37.037 0.00 0.00 0.00 3.25
2298 2446 1.135721 GGCTTGATGGGAAATGCAGTC 59.864 52.381 0.00 0.00 0.00 3.51
2312 2460 5.633830 AATGCAGTCTGAAGTACAAATGG 57.366 39.130 3.32 0.00 0.00 3.16
2345 2522 9.995003 ATGGTTTGCAATTTCTACTAATCAAAA 57.005 25.926 0.00 0.00 0.00 2.44
2346 2523 9.995003 TGGTTTGCAATTTCTACTAATCAAAAT 57.005 25.926 0.00 0.00 0.00 1.82
2407 2585 9.353999 CCTCCGGAATTACTTTTAAAAATTCTG 57.646 33.333 18.03 18.03 42.06 3.02
2492 2685 8.765488 TTGAAGGGCATCATCTGATTTATTTA 57.235 30.769 0.00 0.00 31.21 1.40
2561 2754 4.626287 GCAGGTCATCAACAGGGATTTCTA 60.626 45.833 0.00 0.00 0.00 2.10
2562 2755 5.121811 CAGGTCATCAACAGGGATTTCTAG 58.878 45.833 0.00 0.00 0.00 2.43
2565 2758 4.878397 GTCATCAACAGGGATTTCTAGGTG 59.122 45.833 0.00 0.00 0.00 4.00
2567 2760 4.286297 TCAACAGGGATTTCTAGGTGTG 57.714 45.455 0.00 0.00 0.00 3.82
2572 2765 4.003648 CAGGGATTTCTAGGTGTGTTCAC 58.996 47.826 0.00 0.00 43.19 3.18
2585 2778 1.229975 TGTTCACGTGCTCATGCCAG 61.230 55.000 11.67 0.00 38.71 4.85
2586 2779 1.071299 TTCACGTGCTCATGCCAGT 59.929 52.632 11.67 0.00 38.71 4.00
2587 2780 0.534877 TTCACGTGCTCATGCCAGTT 60.535 50.000 11.67 0.00 38.71 3.16
2588 2781 0.950555 TCACGTGCTCATGCCAGTTC 60.951 55.000 11.67 0.00 38.71 3.01
2589 2782 2.029288 ACGTGCTCATGCCAGTTCG 61.029 57.895 0.00 0.00 38.71 3.95
2621 2814 2.125753 CTGAGCCGGTCAGTGAGC 60.126 66.667 17.78 12.41 46.89 4.26
2653 2846 4.725304 AGACCCCGGGTAGATATTTTCTTT 59.275 41.667 21.85 0.00 35.25 2.52
2654 2847 4.788679 ACCCCGGGTAGATATTTTCTTTG 58.211 43.478 21.85 0.00 35.79 2.77
2655 2848 4.228895 ACCCCGGGTAGATATTTTCTTTGT 59.771 41.667 21.85 0.19 35.79 2.83
2656 2849 5.198207 CCCCGGGTAGATATTTTCTTTGTT 58.802 41.667 21.85 0.00 35.79 2.83
2657 2850 6.069498 ACCCCGGGTAGATATTTTCTTTGTTA 60.069 38.462 21.85 0.00 35.79 2.41
2658 2851 6.261603 CCCCGGGTAGATATTTTCTTTGTTAC 59.738 42.308 21.85 0.00 35.79 2.50
2659 2852 6.261603 CCCGGGTAGATATTTTCTTTGTTACC 59.738 42.308 14.18 0.00 35.79 2.85
2660 2853 6.018507 CCGGGTAGATATTTTCTTTGTTACCG 60.019 42.308 0.00 0.00 35.79 4.02
2661 2854 6.757947 CGGGTAGATATTTTCTTTGTTACCGA 59.242 38.462 0.00 0.00 35.79 4.69
2662 2855 7.254218 CGGGTAGATATTTTCTTTGTTACCGAC 60.254 40.741 0.00 0.00 35.79 4.79
2663 2856 7.550196 GGGTAGATATTTTCTTTGTTACCGACA 59.450 37.037 0.00 0.00 35.79 4.35
2664 2857 8.385858 GGTAGATATTTTCTTTGTTACCGACAC 58.614 37.037 0.00 0.00 35.37 3.67
2665 2858 7.972832 AGATATTTTCTTTGTTACCGACACA 57.027 32.000 0.00 0.00 38.18 3.72
2666 2859 8.385898 AGATATTTTCTTTGTTACCGACACAA 57.614 30.769 0.00 0.00 38.18 3.33
2667 2860 8.504005 AGATATTTTCTTTGTTACCGACACAAG 58.496 33.333 0.00 0.00 38.18 3.16
2668 2861 3.955771 TTCTTTGTTACCGACACAAGC 57.044 42.857 0.00 0.00 38.18 4.01
2669 2862 2.215196 TCTTTGTTACCGACACAAGCC 58.785 47.619 0.00 0.00 38.18 4.35
2670 2863 1.265905 CTTTGTTACCGACACAAGCCC 59.734 52.381 0.00 0.00 38.18 5.19
2671 2864 0.881159 TTGTTACCGACACAAGCCCG 60.881 55.000 0.00 0.00 38.18 6.13
2672 2865 1.005867 GTTACCGACACAAGCCCGA 60.006 57.895 0.00 0.00 0.00 5.14
2673 2866 1.005867 TTACCGACACAAGCCCGAC 60.006 57.895 0.00 0.00 0.00 4.79
2674 2867 1.466025 TTACCGACACAAGCCCGACT 61.466 55.000 0.00 0.00 0.00 4.18
2675 2868 0.608856 TACCGACACAAGCCCGACTA 60.609 55.000 0.00 0.00 0.00 2.59
2676 2869 1.445582 CCGACACAAGCCCGACTAC 60.446 63.158 0.00 0.00 0.00 2.73
2677 2870 1.585006 CGACACAAGCCCGACTACT 59.415 57.895 0.00 0.00 0.00 2.57
2678 2871 0.038526 CGACACAAGCCCGACTACTT 60.039 55.000 0.00 0.00 0.00 2.24
2679 2872 1.429463 GACACAAGCCCGACTACTTG 58.571 55.000 0.00 0.00 46.91 3.16
2680 2873 0.034896 ACACAAGCCCGACTACTTGG 59.965 55.000 7.57 0.15 46.03 3.61
2681 2874 0.673644 CACAAGCCCGACTACTTGGG 60.674 60.000 7.57 0.00 46.03 4.12
2685 2878 2.584608 CCCGACTACTTGGGCCAG 59.415 66.667 6.23 3.69 38.90 4.85
2686 2879 2.291043 CCCGACTACTTGGGCCAGT 61.291 63.158 6.23 10.04 38.90 4.00
2687 2880 1.218316 CCGACTACTTGGGCCAGTC 59.782 63.158 6.23 10.03 36.23 3.51
2688 2881 1.258445 CCGACTACTTGGGCCAGTCT 61.258 60.000 18.17 3.94 37.20 3.24
2689 2882 0.608640 CGACTACTTGGGCCAGTCTT 59.391 55.000 18.17 5.84 37.20 3.01
2690 2883 1.404315 CGACTACTTGGGCCAGTCTTC 60.404 57.143 18.17 11.87 37.20 2.87
2691 2884 1.623811 GACTACTTGGGCCAGTCTTCA 59.376 52.381 14.52 0.00 36.57 3.02
2692 2885 2.237392 GACTACTTGGGCCAGTCTTCAT 59.763 50.000 14.52 0.00 36.57 2.57
2693 2886 2.644798 ACTACTTGGGCCAGTCTTCATT 59.355 45.455 6.23 0.00 0.00 2.57
2694 2887 1.915141 ACTTGGGCCAGTCTTCATTG 58.085 50.000 6.23 0.00 0.00 2.82
2695 2888 0.529378 CTTGGGCCAGTCTTCATTGC 59.471 55.000 6.23 0.00 0.00 3.56
2696 2889 0.112995 TTGGGCCAGTCTTCATTGCT 59.887 50.000 6.23 0.00 0.00 3.91
2697 2890 0.322816 TGGGCCAGTCTTCATTGCTC 60.323 55.000 0.00 0.00 0.00 4.26
2698 2891 0.034670 GGGCCAGTCTTCATTGCTCT 60.035 55.000 4.39 0.00 0.00 4.09
2699 2892 1.615384 GGGCCAGTCTTCATTGCTCTT 60.615 52.381 4.39 0.00 0.00 2.85
2700 2893 1.471684 GGCCAGTCTTCATTGCTCTTG 59.528 52.381 0.00 0.00 0.00 3.02
2701 2894 2.157738 GCCAGTCTTCATTGCTCTTGT 58.842 47.619 0.00 0.00 0.00 3.16
2702 2895 2.555757 GCCAGTCTTCATTGCTCTTGTT 59.444 45.455 0.00 0.00 0.00 2.83
2703 2896 3.753272 GCCAGTCTTCATTGCTCTTGTTA 59.247 43.478 0.00 0.00 0.00 2.41
2704 2897 4.378874 GCCAGTCTTCATTGCTCTTGTTAC 60.379 45.833 0.00 0.00 0.00 2.50
2705 2898 4.154918 CCAGTCTTCATTGCTCTTGTTACC 59.845 45.833 0.00 0.00 0.00 2.85
2706 2899 4.154918 CAGTCTTCATTGCTCTTGTTACCC 59.845 45.833 0.00 0.00 0.00 3.69
2707 2900 4.072131 GTCTTCATTGCTCTTGTTACCCA 58.928 43.478 0.00 0.00 0.00 4.51
2708 2901 4.518970 GTCTTCATTGCTCTTGTTACCCAA 59.481 41.667 0.00 0.00 0.00 4.12
2724 2917 8.705048 TGTTACCCAAGAAAAATGTAAACAAC 57.295 30.769 0.00 0.00 0.00 3.32
2725 2918 8.532819 TGTTACCCAAGAAAAATGTAAACAACT 58.467 29.630 0.00 0.00 0.00 3.16
2726 2919 9.027129 GTTACCCAAGAAAAATGTAAACAACTC 57.973 33.333 0.00 0.00 0.00 3.01
2727 2920 6.270064 ACCCAAGAAAAATGTAAACAACTCG 58.730 36.000 0.00 0.00 0.00 4.18
2728 2921 6.127563 ACCCAAGAAAAATGTAAACAACTCGT 60.128 34.615 0.00 0.00 0.00 4.18
2729 2922 6.198216 CCCAAGAAAAATGTAAACAACTCGTG 59.802 38.462 0.00 0.00 0.00 4.35
2730 2923 6.750039 CCAAGAAAAATGTAAACAACTCGTGT 59.250 34.615 0.00 0.00 44.64 4.49
2731 2924 7.044314 CCAAGAAAAATGTAAACAACTCGTGTC 60.044 37.037 0.00 0.00 40.60 3.67
2732 2925 7.079182 AGAAAAATGTAAACAACTCGTGTCA 57.921 32.000 0.00 0.00 40.60 3.58
2733 2926 7.703328 AGAAAAATGTAAACAACTCGTGTCAT 58.297 30.769 0.00 0.00 40.60 3.06
2734 2927 8.188139 AGAAAAATGTAAACAACTCGTGTCATT 58.812 29.630 0.00 0.00 40.60 2.57
2735 2928 8.696410 AAAAATGTAAACAACTCGTGTCATTT 57.304 26.923 6.80 6.80 40.89 2.32
2736 2929 9.790389 AAAAATGTAAACAACTCGTGTCATTTA 57.210 25.926 10.95 7.32 39.46 1.40
2737 2930 9.790389 AAAATGTAAACAACTCGTGTCATTTAA 57.210 25.926 10.95 3.81 39.46 1.52
2738 2931 9.790389 AAATGTAAACAACTCGTGTCATTTAAA 57.210 25.926 9.57 0.00 38.99 1.52
2739 2932 9.445786 AATGTAAACAACTCGTGTCATTTAAAG 57.554 29.630 7.46 0.00 40.60 1.85
2740 2933 7.976826 TGTAAACAACTCGTGTCATTTAAAGT 58.023 30.769 7.46 0.00 40.60 2.66
2741 2934 8.452534 TGTAAACAACTCGTGTCATTTAAAGTT 58.547 29.630 7.46 0.00 40.60 2.66
2742 2935 9.281075 GTAAACAACTCGTGTCATTTAAAGTTT 57.719 29.630 7.46 0.00 40.60 2.66
2743 2936 8.751302 AAACAACTCGTGTCATTTAAAGTTTT 57.249 26.923 0.00 0.00 40.60 2.43
2744 2937 7.734538 ACAACTCGTGTCATTTAAAGTTTTG 57.265 32.000 0.00 0.00 34.38 2.44
2745 2938 7.531716 ACAACTCGTGTCATTTAAAGTTTTGA 58.468 30.769 0.00 0.00 34.38 2.69
2746 2939 7.483691 ACAACTCGTGTCATTTAAAGTTTTGAC 59.516 33.333 11.18 11.18 34.38 3.18
2747 2940 6.492254 ACTCGTGTCATTTAAAGTTTTGACC 58.508 36.000 14.18 7.30 38.12 4.02
2748 2941 6.317893 ACTCGTGTCATTTAAAGTTTTGACCT 59.682 34.615 14.18 0.00 38.12 3.85
2749 2942 7.496591 ACTCGTGTCATTTAAAGTTTTGACCTA 59.503 33.333 14.18 0.00 38.12 3.08
2750 2943 7.632721 TCGTGTCATTTAAAGTTTTGACCTAC 58.367 34.615 14.18 7.99 38.12 3.18
2751 2944 7.496591 TCGTGTCATTTAAAGTTTTGACCTACT 59.503 33.333 14.18 0.00 38.12 2.57
2752 2945 7.586300 CGTGTCATTTAAAGTTTTGACCTACTG 59.414 37.037 14.18 3.97 38.12 2.74
2753 2946 7.860872 GTGTCATTTAAAGTTTTGACCTACTGG 59.139 37.037 14.18 0.00 38.12 4.00
2765 2958 1.475682 ACCTACTGGTAGCAACGTAGC 59.524 52.381 13.25 0.00 46.43 3.58
2766 2959 2.883058 ACCTACTGGTAGCAACGTAGCT 60.883 50.000 13.25 0.00 46.43 3.32
2767 2960 2.479730 CCTACTGGTAGCAACGTAGCTG 60.480 54.545 13.25 0.00 46.11 4.24
2768 2961 0.246635 ACTGGTAGCAACGTAGCTGG 59.753 55.000 0.00 0.00 46.11 4.85
2769 2962 0.530744 CTGGTAGCAACGTAGCTGGA 59.469 55.000 0.00 0.00 46.11 3.86
2770 2963 0.245539 TGGTAGCAACGTAGCTGGAC 59.754 55.000 0.00 0.00 46.11 4.02
2771 2964 0.245539 GGTAGCAACGTAGCTGGACA 59.754 55.000 0.00 0.00 46.11 4.02
2772 2965 1.630148 GTAGCAACGTAGCTGGACAG 58.370 55.000 0.00 0.00 46.11 3.51
2781 2974 4.101448 GCTGGACAGCGGGGTCAT 62.101 66.667 8.72 0.00 45.29 3.06
2782 2975 2.187946 CTGGACAGCGGGGTCATC 59.812 66.667 8.17 0.00 39.59 2.92
2783 2976 2.284625 TGGACAGCGGGGTCATCT 60.285 61.111 8.17 0.00 39.59 2.90
2784 2977 1.001120 TGGACAGCGGGGTCATCTA 59.999 57.895 8.17 0.00 39.59 1.98
2785 2978 1.043116 TGGACAGCGGGGTCATCTAG 61.043 60.000 8.17 0.00 39.59 2.43
2786 2979 1.742768 GACAGCGGGGTCATCTAGG 59.257 63.158 0.00 0.00 37.73 3.02
2787 2980 1.001760 ACAGCGGGGTCATCTAGGT 59.998 57.895 0.00 0.00 0.00 3.08
2788 2981 0.617820 ACAGCGGGGTCATCTAGGTT 60.618 55.000 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.077716 AGCGGGGTGAATAGGCAAC 60.078 57.895 0.00 0.00 0.00 4.17
3 4 1.223487 GAGCGGGGTGAATAGGCAA 59.777 57.895 0.00 0.00 0.00 4.52
4 5 0.397957 TAGAGCGGGGTGAATAGGCA 60.398 55.000 0.00 0.00 0.00 4.75
5 6 0.318762 CTAGAGCGGGGTGAATAGGC 59.681 60.000 0.00 0.00 0.00 3.93
6 7 1.614413 GACTAGAGCGGGGTGAATAGG 59.386 57.143 0.00 0.00 0.00 2.57
7 8 2.307768 TGACTAGAGCGGGGTGAATAG 58.692 52.381 0.00 0.00 0.00 1.73
8 9 2.429610 GTTGACTAGAGCGGGGTGAATA 59.570 50.000 0.00 0.00 0.00 1.75
9 10 1.207329 GTTGACTAGAGCGGGGTGAAT 59.793 52.381 0.00 0.00 0.00 2.57
10 11 0.606604 GTTGACTAGAGCGGGGTGAA 59.393 55.000 0.00 0.00 0.00 3.18
11 12 1.255667 GGTTGACTAGAGCGGGGTGA 61.256 60.000 0.00 0.00 0.00 4.02
12 13 1.218316 GGTTGACTAGAGCGGGGTG 59.782 63.158 0.00 0.00 0.00 4.61
13 14 0.617820 ATGGTTGACTAGAGCGGGGT 60.618 55.000 0.00 0.00 0.00 4.95
14 15 1.410004 TATGGTTGACTAGAGCGGGG 58.590 55.000 0.00 0.00 0.00 5.73
15 16 2.351835 CGATATGGTTGACTAGAGCGGG 60.352 54.545 0.00 0.00 0.00 6.13
16 17 2.552743 TCGATATGGTTGACTAGAGCGG 59.447 50.000 0.00 0.00 28.87 5.52
17 18 3.898517 TCGATATGGTTGACTAGAGCG 57.101 47.619 0.00 0.00 0.00 5.03
18 19 4.461081 AGGATCGATATGGTTGACTAGAGC 59.539 45.833 0.00 0.00 0.00 4.09
19 20 6.582677 AAGGATCGATATGGTTGACTAGAG 57.417 41.667 0.00 0.00 0.00 2.43
20 21 6.549736 TGAAAGGATCGATATGGTTGACTAGA 59.450 38.462 0.00 0.00 0.00 2.43
21 22 6.642950 GTGAAAGGATCGATATGGTTGACTAG 59.357 42.308 0.00 0.00 0.00 2.57
22 23 6.462487 GGTGAAAGGATCGATATGGTTGACTA 60.462 42.308 0.00 0.00 0.00 2.59
23 24 5.360591 GTGAAAGGATCGATATGGTTGACT 58.639 41.667 0.00 0.00 0.00 3.41
24 25 4.511826 GGTGAAAGGATCGATATGGTTGAC 59.488 45.833 0.00 0.00 0.00 3.18
25 26 4.703897 GGTGAAAGGATCGATATGGTTGA 58.296 43.478 0.00 0.00 0.00 3.18
26 27 3.494626 CGGTGAAAGGATCGATATGGTTG 59.505 47.826 0.00 0.00 0.00 3.77
27 28 3.728845 CGGTGAAAGGATCGATATGGTT 58.271 45.455 0.00 0.00 0.00 3.67
28 29 2.548067 GCGGTGAAAGGATCGATATGGT 60.548 50.000 0.00 0.00 0.00 3.55
29 30 2.069273 GCGGTGAAAGGATCGATATGG 58.931 52.381 0.00 0.00 0.00 2.74
30 31 2.069273 GGCGGTGAAAGGATCGATATG 58.931 52.381 0.00 0.00 0.00 1.78
31 32 1.002087 GGGCGGTGAAAGGATCGATAT 59.998 52.381 0.00 0.00 0.00 1.63
32 33 0.391597 GGGCGGTGAAAGGATCGATA 59.608 55.000 0.00 0.00 0.00 2.92
33 34 1.146263 GGGCGGTGAAAGGATCGAT 59.854 57.895 0.00 0.00 0.00 3.59
34 35 2.582436 GGGCGGTGAAAGGATCGA 59.418 61.111 0.00 0.00 0.00 3.59
35 36 2.513897 GGGGCGGTGAAAGGATCG 60.514 66.667 0.00 0.00 0.00 3.69
36 37 1.153147 GAGGGGCGGTGAAAGGATC 60.153 63.158 0.00 0.00 0.00 3.36
37 38 1.208165 AAGAGGGGCGGTGAAAGGAT 61.208 55.000 0.00 0.00 0.00 3.24
38 39 1.846124 AAGAGGGGCGGTGAAAGGA 60.846 57.895 0.00 0.00 0.00 3.36
39 40 1.675641 CAAGAGGGGCGGTGAAAGG 60.676 63.158 0.00 0.00 0.00 3.11
40 41 2.335712 GCAAGAGGGGCGGTGAAAG 61.336 63.158 0.00 0.00 0.00 2.62
41 42 2.282180 GCAAGAGGGGCGGTGAAA 60.282 61.111 0.00 0.00 0.00 2.69
42 43 4.344865 GGCAAGAGGGGCGGTGAA 62.345 66.667 0.00 0.00 0.00 3.18
68 69 2.921538 GATCTGGACGGCGACTCACG 62.922 65.000 16.62 3.00 45.66 4.35
69 70 1.226717 GATCTGGACGGCGACTCAC 60.227 63.158 16.62 0.00 0.00 3.51
70 71 2.415608 GGATCTGGACGGCGACTCA 61.416 63.158 16.62 7.14 0.00 3.41
71 72 2.413765 GGATCTGGACGGCGACTC 59.586 66.667 16.62 0.10 0.00 3.36
72 73 3.518998 CGGATCTGGACGGCGACT 61.519 66.667 16.62 0.00 0.00 4.18
73 74 3.753070 GACGGATCTGGACGGCGAC 62.753 68.421 16.62 7.58 0.00 5.19
74 75 3.515286 GACGGATCTGGACGGCGA 61.515 66.667 16.62 0.00 0.00 5.54
76 77 4.570663 CCGACGGATCTGGACGGC 62.571 72.222 22.59 7.11 37.32 5.68
78 79 1.226603 GAACCGACGGATCTGGACG 60.227 63.158 23.38 10.94 0.00 4.79
79 80 0.458025 GTGAACCGACGGATCTGGAC 60.458 60.000 23.38 9.10 0.00 4.02
80 81 1.888018 GTGAACCGACGGATCTGGA 59.112 57.895 23.38 0.00 0.00 3.86
81 82 1.516386 CGTGAACCGACGGATCTGG 60.516 63.158 23.38 10.52 39.56 3.86
82 83 2.158959 GCGTGAACCGACGGATCTG 61.159 63.158 23.38 15.69 39.81 2.90
83 84 2.181021 GCGTGAACCGACGGATCT 59.819 61.111 23.38 4.02 39.81 2.75
84 85 3.245315 CGCGTGAACCGACGGATC 61.245 66.667 23.38 19.63 39.81 3.36
131 132 4.479993 CCGAAGCAGGGGAGGCAG 62.480 72.222 0.00 0.00 0.00 4.85
134 135 4.479993 CAGCCGAAGCAGGGGAGG 62.480 72.222 0.00 0.00 43.56 4.30
138 139 3.437795 CTTGCAGCCGAAGCAGGG 61.438 66.667 0.00 0.00 43.75 4.45
139 140 4.112341 GCTTGCAGCCGAAGCAGG 62.112 66.667 11.66 1.85 44.43 4.85
142 143 4.748679 CGTGCTTGCAGCCGAAGC 62.749 66.667 9.97 9.97 45.12 3.86
143 144 4.748679 GCGTGCTTGCAGCCGAAG 62.749 66.667 16.62 1.64 41.51 3.79
184 185 4.929707 CTCCCATAACCGCCGCCC 62.930 72.222 0.00 0.00 0.00 6.13
185 186 4.929707 CCTCCCATAACCGCCGCC 62.930 72.222 0.00 0.00 0.00 6.13
188 189 3.394635 TTCGCCTCCCATAACCGCC 62.395 63.158 0.00 0.00 0.00 6.13
189 190 1.887707 CTTCGCCTCCCATAACCGC 60.888 63.158 0.00 0.00 0.00 5.68
190 191 1.227556 CCTTCGCCTCCCATAACCG 60.228 63.158 0.00 0.00 0.00 4.44
191 192 0.106894 CTCCTTCGCCTCCCATAACC 59.893 60.000 0.00 0.00 0.00 2.85
192 193 0.533085 GCTCCTTCGCCTCCCATAAC 60.533 60.000 0.00 0.00 0.00 1.89
193 194 0.691078 AGCTCCTTCGCCTCCCATAA 60.691 55.000 0.00 0.00 0.00 1.90
194 195 1.075226 AGCTCCTTCGCCTCCCATA 60.075 57.895 0.00 0.00 0.00 2.74
195 196 2.366167 AGCTCCTTCGCCTCCCAT 60.366 61.111 0.00 0.00 0.00 4.00
196 197 3.077556 GAGCTCCTTCGCCTCCCA 61.078 66.667 0.87 0.00 0.00 4.37
197 198 4.214327 CGAGCTCCTTCGCCTCCC 62.214 72.222 8.47 0.00 33.39 4.30
198 199 4.214327 CCGAGCTCCTTCGCCTCC 62.214 72.222 8.47 0.00 39.19 4.30
199 200 4.214327 CCCGAGCTCCTTCGCCTC 62.214 72.222 8.47 0.00 39.19 4.70
222 223 1.906333 GATCGAGAGGAGGAGCCCC 60.906 68.421 0.00 0.00 37.37 5.80
223 224 0.402504 TAGATCGAGAGGAGGAGCCC 59.597 60.000 0.00 0.00 37.37 5.19
224 225 1.349688 TCTAGATCGAGAGGAGGAGCC 59.650 57.143 0.81 0.00 0.00 4.70
225 226 2.851263 TCTAGATCGAGAGGAGGAGC 57.149 55.000 0.81 0.00 0.00 4.70
254 255 4.796231 ATCGTCTCCACGCACGGC 62.796 66.667 0.00 0.00 46.28 5.68
255 256 2.812542 TTCATCGTCTCCACGCACGG 62.813 60.000 0.00 0.00 46.28 4.94
256 257 1.443702 TTCATCGTCTCCACGCACG 60.444 57.895 0.00 0.00 46.28 5.34
257 258 0.666274 TGTTCATCGTCTCCACGCAC 60.666 55.000 0.00 0.00 46.28 5.34
258 259 0.388520 CTGTTCATCGTCTCCACGCA 60.389 55.000 0.00 0.00 46.28 5.24
259 260 0.388649 ACTGTTCATCGTCTCCACGC 60.389 55.000 0.00 0.00 46.28 5.34
261 262 2.531206 GCTACTGTTCATCGTCTCCAC 58.469 52.381 0.00 0.00 0.00 4.02
262 263 1.132453 CGCTACTGTTCATCGTCTCCA 59.868 52.381 0.00 0.00 0.00 3.86
263 264 1.828832 CGCTACTGTTCATCGTCTCC 58.171 55.000 0.00 0.00 0.00 3.71
264 265 1.192793 GCGCTACTGTTCATCGTCTC 58.807 55.000 0.00 0.00 0.00 3.36
265 266 0.179134 GGCGCTACTGTTCATCGTCT 60.179 55.000 7.64 0.00 0.00 4.18
266 267 1.472276 CGGCGCTACTGTTCATCGTC 61.472 60.000 7.64 0.00 0.00 4.20
267 268 1.516386 CGGCGCTACTGTTCATCGT 60.516 57.895 7.64 0.00 0.00 3.73
268 269 2.230940 CCGGCGCTACTGTTCATCG 61.231 63.158 7.64 0.00 0.00 3.84
269 270 2.526120 GCCGGCGCTACTGTTCATC 61.526 63.158 12.58 0.00 0.00 2.92
270 271 2.511600 GCCGGCGCTACTGTTCAT 60.512 61.111 12.58 0.00 0.00 2.57
272 273 4.789075 TCGCCGGCGCTACTGTTC 62.789 66.667 42.78 0.27 39.59 3.18
273 274 4.367023 TTCGCCGGCGCTACTGTT 62.367 61.111 42.78 0.00 39.59 3.16
274 275 4.796231 CTTCGCCGGCGCTACTGT 62.796 66.667 42.78 0.00 39.59 3.55
291 292 0.106521 TTTTGCAGAAAGCCCCTTGC 59.893 50.000 0.00 0.00 44.83 4.01
292 293 2.102925 TCTTTTTGCAGAAAGCCCCTTG 59.897 45.455 21.68 1.38 44.83 3.61
293 294 2.397597 TCTTTTTGCAGAAAGCCCCTT 58.602 42.857 21.68 0.00 44.83 3.95
294 295 2.086610 TCTTTTTGCAGAAAGCCCCT 57.913 45.000 21.68 0.00 44.83 4.79
295 296 2.908688 TTCTTTTTGCAGAAAGCCCC 57.091 45.000 21.68 0.00 44.83 5.80
296 297 2.481568 GCATTCTTTTTGCAGAAAGCCC 59.518 45.455 21.68 8.35 40.21 5.19
297 298 3.800929 GCATTCTTTTTGCAGAAAGCC 57.199 42.857 21.68 8.64 40.21 4.35
298 299 3.059393 GTGGCATTCTTTTTGCAGAAAGC 60.059 43.478 21.68 13.45 43.64 3.51
299 300 4.121317 TGTGGCATTCTTTTTGCAGAAAG 58.879 39.130 20.73 20.73 41.95 2.62
300 301 4.134379 TGTGGCATTCTTTTTGCAGAAA 57.866 36.364 2.07 2.07 41.95 2.52
301 302 3.815856 TGTGGCATTCTTTTTGCAGAA 57.184 38.095 0.00 0.00 41.95 3.02
302 303 3.612241 CGATGTGGCATTCTTTTTGCAGA 60.612 43.478 0.00 0.00 41.95 4.26
303 304 2.664568 CGATGTGGCATTCTTTTTGCAG 59.335 45.455 0.00 0.00 41.95 4.41
304 305 2.295629 TCGATGTGGCATTCTTTTTGCA 59.704 40.909 0.00 0.00 41.95 4.08
305 306 2.663119 GTCGATGTGGCATTCTTTTTGC 59.337 45.455 0.00 0.00 39.41 3.68
306 307 3.899734 TGTCGATGTGGCATTCTTTTTG 58.100 40.909 0.00 0.00 0.00 2.44
307 308 3.612479 GCTGTCGATGTGGCATTCTTTTT 60.612 43.478 0.00 0.00 0.00 1.94
308 309 2.095059 GCTGTCGATGTGGCATTCTTTT 60.095 45.455 0.00 0.00 0.00 2.27
309 310 1.470098 GCTGTCGATGTGGCATTCTTT 59.530 47.619 0.00 0.00 0.00 2.52
310 311 1.089920 GCTGTCGATGTGGCATTCTT 58.910 50.000 0.00 0.00 0.00 2.52
311 312 0.251354 AGCTGTCGATGTGGCATTCT 59.749 50.000 0.00 0.00 0.00 2.40
312 313 0.376152 CAGCTGTCGATGTGGCATTC 59.624 55.000 5.25 0.00 0.00 2.67
313 314 0.036105 TCAGCTGTCGATGTGGCATT 60.036 50.000 14.67 0.00 0.00 3.56
314 315 0.742281 GTCAGCTGTCGATGTGGCAT 60.742 55.000 14.67 0.00 0.00 4.40
315 316 1.374631 GTCAGCTGTCGATGTGGCA 60.375 57.895 14.67 0.00 0.00 4.92
316 317 0.742281 ATGTCAGCTGTCGATGTGGC 60.742 55.000 14.67 0.00 0.00 5.01
317 318 1.004595 CATGTCAGCTGTCGATGTGG 58.995 55.000 14.67 0.00 0.00 4.17
318 319 0.372679 GCATGTCAGCTGTCGATGTG 59.627 55.000 14.67 7.26 0.00 3.21
319 320 1.080435 CGCATGTCAGCTGTCGATGT 61.080 55.000 14.67 0.00 0.00 3.06
320 321 1.634753 CGCATGTCAGCTGTCGATG 59.365 57.895 14.67 14.42 0.00 3.84
321 322 1.520120 CCGCATGTCAGCTGTCGAT 60.520 57.895 14.67 1.28 0.00 3.59
322 323 2.125952 CCGCATGTCAGCTGTCGA 60.126 61.111 14.67 0.00 0.00 4.20
323 324 3.190849 CCCGCATGTCAGCTGTCG 61.191 66.667 14.67 10.26 0.00 4.35
324 325 3.503363 GCCCGCATGTCAGCTGTC 61.503 66.667 14.67 9.06 0.00 3.51
340 341 4.603946 GTATCTGACCGGCGGGGC 62.604 72.222 31.78 21.76 44.16 5.80
341 342 3.151710 TGTATCTGACCGGCGGGG 61.152 66.667 31.78 19.20 43.62 5.73
342 343 2.106332 GTGTATCTGACCGGCGGG 59.894 66.667 31.78 13.02 40.11 6.13
343 344 2.106332 GGTGTATCTGACCGGCGG 59.894 66.667 27.06 27.06 0.00 6.13
348 349 3.369385 CGTATTGACGGTGTATCTGACC 58.631 50.000 0.00 0.00 45.63 4.02
371 372 7.959109 ACAAAAAGGTCTAAATCGCGTATAAAC 59.041 33.333 5.77 0.00 0.00 2.01
372 373 8.031848 ACAAAAAGGTCTAAATCGCGTATAAA 57.968 30.769 5.77 0.00 0.00 1.40
373 374 7.599630 ACAAAAAGGTCTAAATCGCGTATAA 57.400 32.000 5.77 0.00 0.00 0.98
374 375 8.594687 GTTACAAAAAGGTCTAAATCGCGTATA 58.405 33.333 5.77 0.00 0.00 1.47
375 376 7.458677 GTTACAAAAAGGTCTAAATCGCGTAT 58.541 34.615 5.77 0.00 0.00 3.06
376 377 6.399880 CGTTACAAAAAGGTCTAAATCGCGTA 60.400 38.462 5.77 0.00 0.00 4.42
377 378 5.613142 CGTTACAAAAAGGTCTAAATCGCGT 60.613 40.000 5.77 0.00 0.00 6.01
378 379 4.779523 CGTTACAAAAAGGTCTAAATCGCG 59.220 41.667 0.00 0.00 0.00 5.87
379 380 5.682869 ACGTTACAAAAAGGTCTAAATCGC 58.317 37.500 0.00 0.00 0.00 4.58
380 381 7.113704 AGACGTTACAAAAAGGTCTAAATCG 57.886 36.000 10.43 0.00 41.76 3.34
381 382 8.167345 GCTAGACGTTACAAAAAGGTCTAAATC 58.833 37.037 16.52 8.74 43.01 2.17
382 383 7.118825 GGCTAGACGTTACAAAAAGGTCTAAAT 59.881 37.037 16.52 0.78 43.01 1.40
383 384 6.424812 GGCTAGACGTTACAAAAAGGTCTAAA 59.575 38.462 16.52 3.58 43.01 1.85
384 385 5.928264 GGCTAGACGTTACAAAAAGGTCTAA 59.072 40.000 16.52 6.02 43.01 2.10
385 386 5.473039 GGCTAGACGTTACAAAAAGGTCTA 58.527 41.667 15.51 15.51 42.91 2.59
386 387 4.313282 GGCTAGACGTTACAAAAAGGTCT 58.687 43.478 15.02 15.02 44.50 3.85
387 388 3.434641 GGGCTAGACGTTACAAAAAGGTC 59.565 47.826 0.00 3.11 35.84 3.85
388 389 3.405831 GGGCTAGACGTTACAAAAAGGT 58.594 45.455 0.00 0.00 0.00 3.50
389 390 2.745821 GGGGCTAGACGTTACAAAAAGG 59.254 50.000 0.00 0.00 0.00 3.11
390 391 3.404899 TGGGGCTAGACGTTACAAAAAG 58.595 45.455 0.00 0.00 0.00 2.27
391 392 3.071312 TCTGGGGCTAGACGTTACAAAAA 59.929 43.478 0.00 0.00 0.00 1.94
392 393 2.633967 TCTGGGGCTAGACGTTACAAAA 59.366 45.455 0.00 0.00 0.00 2.44
393 394 2.028748 GTCTGGGGCTAGACGTTACAAA 60.029 50.000 0.00 0.00 37.88 2.83
394 395 1.547372 GTCTGGGGCTAGACGTTACAA 59.453 52.381 0.00 0.00 37.88 2.41
395 396 1.180029 GTCTGGGGCTAGACGTTACA 58.820 55.000 0.00 0.00 37.88 2.41
401 402 3.633065 CAGTACTAAGTCTGGGGCTAGAC 59.367 52.174 12.47 12.47 45.83 2.59
402 403 3.526430 TCAGTACTAAGTCTGGGGCTAGA 59.474 47.826 0.00 0.00 33.13 2.43
403 404 3.633065 GTCAGTACTAAGTCTGGGGCTAG 59.367 52.174 0.00 0.00 33.13 3.42
404 405 3.010920 TGTCAGTACTAAGTCTGGGGCTA 59.989 47.826 0.00 0.00 33.13 3.93
405 406 2.225293 TGTCAGTACTAAGTCTGGGGCT 60.225 50.000 0.00 0.00 33.13 5.19
406 407 2.094130 GTGTCAGTACTAAGTCTGGGGC 60.094 54.545 0.00 0.00 33.13 5.80
407 408 3.162666 TGTGTCAGTACTAAGTCTGGGG 58.837 50.000 0.00 0.00 33.13 4.96
408 409 6.525578 TTATGTGTCAGTACTAAGTCTGGG 57.474 41.667 0.00 0.00 33.13 4.45
409 410 8.827177 TTTTTATGTGTCAGTACTAAGTCTGG 57.173 34.615 0.00 0.00 33.13 3.86
436 437 7.283127 GGAAGCAGATTGGTATCAAGTTTGATA 59.717 37.037 9.84 9.84 45.54 2.15
438 439 5.415701 GGAAGCAGATTGGTATCAAGTTTGA 59.584 40.000 0.00 0.00 42.14 2.69
439 440 5.183713 TGGAAGCAGATTGGTATCAAGTTTG 59.816 40.000 0.00 0.00 36.19 2.93
440 441 5.324409 TGGAAGCAGATTGGTATCAAGTTT 58.676 37.500 0.00 0.00 36.19 2.66
441 442 4.922206 TGGAAGCAGATTGGTATCAAGTT 58.078 39.130 0.00 0.00 36.19 2.66
442 443 4.574674 TGGAAGCAGATTGGTATCAAGT 57.425 40.909 0.00 0.00 36.19 3.16
443 444 5.735354 GCATTGGAAGCAGATTGGTATCAAG 60.735 44.000 0.00 0.00 36.19 3.02
444 445 4.098349 GCATTGGAAGCAGATTGGTATCAA 59.902 41.667 0.00 0.00 37.28 2.57
445 446 3.633525 GCATTGGAAGCAGATTGGTATCA 59.366 43.478 0.00 0.00 32.95 2.15
446 447 3.887716 AGCATTGGAAGCAGATTGGTATC 59.112 43.478 0.00 0.00 0.00 2.24
447 448 3.887716 GAGCATTGGAAGCAGATTGGTAT 59.112 43.478 0.00 0.00 0.00 2.73
448 449 3.282021 GAGCATTGGAAGCAGATTGGTA 58.718 45.455 0.00 0.00 0.00 3.25
449 450 2.097825 GAGCATTGGAAGCAGATTGGT 58.902 47.619 0.00 0.00 0.00 3.67
450 451 1.407979 GGAGCATTGGAAGCAGATTGG 59.592 52.381 0.00 0.00 0.00 3.16
451 452 2.097036 TGGAGCATTGGAAGCAGATTG 58.903 47.619 0.00 0.00 0.00 2.67
452 453 2.519771 TGGAGCATTGGAAGCAGATT 57.480 45.000 0.00 0.00 0.00 2.40
453 454 2.519771 TTGGAGCATTGGAAGCAGAT 57.480 45.000 0.00 0.00 0.00 2.90
454 455 2.494471 CAATTGGAGCATTGGAAGCAGA 59.506 45.455 0.00 0.00 0.00 4.26
455 456 2.232941 ACAATTGGAGCATTGGAAGCAG 59.767 45.455 10.83 0.00 32.40 4.24
456 457 2.028839 CACAATTGGAGCATTGGAAGCA 60.029 45.455 10.83 0.00 32.40 3.91
457 458 2.231964 TCACAATTGGAGCATTGGAAGC 59.768 45.455 10.83 0.00 32.40 3.86
458 459 4.730949 ATCACAATTGGAGCATTGGAAG 57.269 40.909 10.83 0.00 32.40 3.46
459 460 5.263599 AGTATCACAATTGGAGCATTGGAA 58.736 37.500 10.83 0.00 32.40 3.53
460 461 4.858850 AGTATCACAATTGGAGCATTGGA 58.141 39.130 10.83 0.00 32.40 3.53
461 462 5.587388 AAGTATCACAATTGGAGCATTGG 57.413 39.130 10.83 0.00 32.40 3.16
462 463 7.646526 CACATAAGTATCACAATTGGAGCATTG 59.353 37.037 10.83 0.00 0.00 2.82
463 464 7.682741 GCACATAAGTATCACAATTGGAGCATT 60.683 37.037 10.83 0.35 0.00 3.56
464 465 6.238842 GCACATAAGTATCACAATTGGAGCAT 60.239 38.462 10.83 0.00 0.00 3.79
465 466 5.066375 GCACATAAGTATCACAATTGGAGCA 59.934 40.000 10.83 0.00 0.00 4.26
466 467 5.066375 TGCACATAAGTATCACAATTGGAGC 59.934 40.000 10.83 0.00 0.00 4.70
467 468 6.682423 TGCACATAAGTATCACAATTGGAG 57.318 37.500 10.83 1.96 0.00 3.86
468 469 7.643569 ATTGCACATAAGTATCACAATTGGA 57.356 32.000 10.83 4.78 0.00 3.53
469 470 8.706492 AAATTGCACATAAGTATCACAATTGG 57.294 30.769 10.83 0.00 36.62 3.16
474 475 9.225436 TGAAGTAAATTGCACATAAGTATCACA 57.775 29.630 0.00 0.00 0.00 3.58
477 478 9.586150 CGATGAAGTAAATTGCACATAAGTATC 57.414 33.333 0.00 0.00 0.00 2.24
478 479 9.109393 ACGATGAAGTAAATTGCACATAAGTAT 57.891 29.630 0.00 0.00 0.00 2.12
479 480 8.487313 ACGATGAAGTAAATTGCACATAAGTA 57.513 30.769 0.00 0.00 0.00 2.24
480 481 7.334421 AGACGATGAAGTAAATTGCACATAAGT 59.666 33.333 0.00 0.00 0.00 2.24
481 482 7.637519 CAGACGATGAAGTAAATTGCACATAAG 59.362 37.037 0.00 0.00 0.00 1.73
482 483 7.413988 CCAGACGATGAAGTAAATTGCACATAA 60.414 37.037 0.00 0.00 0.00 1.90
483 484 6.037062 CCAGACGATGAAGTAAATTGCACATA 59.963 38.462 0.00 0.00 0.00 2.29
484 485 5.163723 CCAGACGATGAAGTAAATTGCACAT 60.164 40.000 0.00 0.00 0.00 3.21
485 486 4.154015 CCAGACGATGAAGTAAATTGCACA 59.846 41.667 0.00 0.00 0.00 4.57
486 487 4.651994 CCAGACGATGAAGTAAATTGCAC 58.348 43.478 0.00 0.00 0.00 4.57
487 488 3.126858 GCCAGACGATGAAGTAAATTGCA 59.873 43.478 0.00 0.00 0.00 4.08
488 489 3.375299 AGCCAGACGATGAAGTAAATTGC 59.625 43.478 0.00 0.00 0.00 3.56
489 490 5.122239 TGAAGCCAGACGATGAAGTAAATTG 59.878 40.000 0.00 0.00 0.00 2.32
490 491 5.245531 TGAAGCCAGACGATGAAGTAAATT 58.754 37.500 0.00 0.00 0.00 1.82
491 492 4.832248 TGAAGCCAGACGATGAAGTAAAT 58.168 39.130 0.00 0.00 0.00 1.40
492 493 4.265904 TGAAGCCAGACGATGAAGTAAA 57.734 40.909 0.00 0.00 0.00 2.01
493 494 3.953712 TGAAGCCAGACGATGAAGTAA 57.046 42.857 0.00 0.00 0.00 2.24
494 495 3.953712 TTGAAGCCAGACGATGAAGTA 57.046 42.857 0.00 0.00 0.00 2.24
495 496 2.839486 TTGAAGCCAGACGATGAAGT 57.161 45.000 0.00 0.00 0.00 3.01
496 497 3.070018 ACTTTGAAGCCAGACGATGAAG 58.930 45.455 0.00 0.00 0.00 3.02
497 498 2.807967 CACTTTGAAGCCAGACGATGAA 59.192 45.455 0.00 0.00 0.00 2.57
498 499 2.037121 TCACTTTGAAGCCAGACGATGA 59.963 45.455 0.00 0.00 0.00 2.92
499 500 2.414481 CTCACTTTGAAGCCAGACGATG 59.586 50.000 0.00 0.00 0.00 3.84
500 501 2.037772 ACTCACTTTGAAGCCAGACGAT 59.962 45.455 0.00 0.00 0.00 3.73
501 502 1.412710 ACTCACTTTGAAGCCAGACGA 59.587 47.619 0.00 0.00 0.00 4.20
502 503 1.528586 CACTCACTTTGAAGCCAGACG 59.471 52.381 0.00 0.00 0.00 4.18
507 508 1.876156 CCACTCACTCACTTTGAAGCC 59.124 52.381 0.00 0.00 0.00 4.35
568 569 2.184533 TGATTTTACTCCCAGCTCGGA 58.815 47.619 0.00 0.00 36.56 4.55
569 570 2.691409 TGATTTTACTCCCAGCTCGG 57.309 50.000 0.00 0.00 0.00 4.63
570 571 4.209288 CGTTATGATTTTACTCCCAGCTCG 59.791 45.833 0.00 0.00 0.00 5.03
571 572 5.116882 ACGTTATGATTTTACTCCCAGCTC 58.883 41.667 0.00 0.00 0.00 4.09
573 574 5.116882 AGACGTTATGATTTTACTCCCAGC 58.883 41.667 0.00 0.00 0.00 4.85
574 575 6.816640 TGAAGACGTTATGATTTTACTCCCAG 59.183 38.462 0.00 0.00 0.00 4.45
575 576 6.703319 TGAAGACGTTATGATTTTACTCCCA 58.297 36.000 0.00 0.00 0.00 4.37
576 577 7.039882 TCTGAAGACGTTATGATTTTACTCCC 58.960 38.462 0.00 0.00 0.00 4.30
577 578 8.475331 TTCTGAAGACGTTATGATTTTACTCC 57.525 34.615 0.00 0.00 0.00 3.85
582 583 9.329913 CGAAATTTCTGAAGACGTTATGATTTT 57.670 29.630 15.92 0.00 0.00 1.82
583 584 8.717821 TCGAAATTTCTGAAGACGTTATGATTT 58.282 29.630 15.92 0.00 0.00 2.17
584 585 8.251750 TCGAAATTTCTGAAGACGTTATGATT 57.748 30.769 15.92 0.00 0.00 2.57
585 586 7.464710 GCTCGAAATTTCTGAAGACGTTATGAT 60.465 37.037 15.92 0.00 0.00 2.45
586 587 6.183360 GCTCGAAATTTCTGAAGACGTTATGA 60.183 38.462 15.92 0.86 0.00 2.15
587 588 5.954349 GCTCGAAATTTCTGAAGACGTTATG 59.046 40.000 15.92 0.00 0.00 1.90
588 589 5.869888 AGCTCGAAATTTCTGAAGACGTTAT 59.130 36.000 15.92 0.00 0.00 1.89
589 590 5.118664 CAGCTCGAAATTTCTGAAGACGTTA 59.881 40.000 15.92 0.00 0.00 3.18
590 591 4.058817 AGCTCGAAATTTCTGAAGACGTT 58.941 39.130 15.92 0.29 0.00 3.99
636 637 3.069158 GGAATCCATCAATCAAAGCCTGG 59.931 47.826 0.00 0.00 0.00 4.45
705 709 1.200948 GAAATGAGTTGTGGCTCCTGC 59.799 52.381 0.00 0.00 34.74 4.85
712 721 4.605640 AATGGGTTGAAATGAGTTGTGG 57.394 40.909 0.00 0.00 0.00 4.17
735 744 6.019075 TGACATGTCGGCGATAAAAAGATAAG 60.019 38.462 20.54 0.00 0.00 1.73
736 745 5.813157 TGACATGTCGGCGATAAAAAGATAA 59.187 36.000 20.54 0.00 0.00 1.75
737 746 5.353111 TGACATGTCGGCGATAAAAAGATA 58.647 37.500 20.54 0.00 0.00 1.98
738 747 4.188462 TGACATGTCGGCGATAAAAAGAT 58.812 39.130 20.54 0.00 0.00 2.40
739 748 3.591023 TGACATGTCGGCGATAAAAAGA 58.409 40.909 20.54 0.00 0.00 2.52
740 749 4.536364 ATGACATGTCGGCGATAAAAAG 57.464 40.909 20.54 5.07 0.00 2.27
817 827 1.221414 GTGTGCTTTCTCTCGTTGCT 58.779 50.000 0.00 0.00 0.00 3.91
831 841 4.506288 GTGGGTTTCTGTTTAAATGTGTGC 59.494 41.667 0.00 0.00 0.00 4.57
843 853 4.760204 CGAAGATTTTAGGTGGGTTTCTGT 59.240 41.667 0.00 0.00 0.00 3.41
846 856 5.952526 TTCGAAGATTTTAGGTGGGTTTC 57.047 39.130 0.00 0.00 35.04 2.78
894 904 3.117625 GGGAGGGTGAGGGGTTTTATAAG 60.118 52.174 0.00 0.00 0.00 1.73
1338 1355 1.135199 ACGTAGCCGGTGATGTTGTAG 60.135 52.381 1.90 0.00 38.78 2.74
1875 1979 1.589803 AAACAACAGCTCCGTACACC 58.410 50.000 0.00 0.00 0.00 4.16
1877 1981 3.810941 CCTAAAAACAACAGCTCCGTACA 59.189 43.478 0.00 0.00 0.00 2.90
1882 1986 6.759827 TCGATATACCTAAAAACAACAGCTCC 59.240 38.462 0.00 0.00 0.00 4.70
1883 1987 7.516943 GCTCGATATACCTAAAAACAACAGCTC 60.517 40.741 0.00 0.00 0.00 4.09
1885 1989 6.258068 AGCTCGATATACCTAAAAACAACAGC 59.742 38.462 0.00 0.00 0.00 4.40
1886 1990 7.277981 ACAGCTCGATATACCTAAAAACAACAG 59.722 37.037 0.00 0.00 0.00 3.16
1887 1991 7.101054 ACAGCTCGATATACCTAAAAACAACA 58.899 34.615 0.00 0.00 0.00 3.33
1888 1992 7.535489 ACAGCTCGATATACCTAAAAACAAC 57.465 36.000 0.00 0.00 0.00 3.32
1890 1994 7.101054 ACAACAGCTCGATATACCTAAAAACA 58.899 34.615 0.00 0.00 0.00 2.83
1891 1995 7.535489 ACAACAGCTCGATATACCTAAAAAC 57.465 36.000 0.00 0.00 0.00 2.43
1892 1996 8.556213 AAACAACAGCTCGATATACCTAAAAA 57.444 30.769 0.00 0.00 0.00 1.94
1893 1997 8.556213 AAAACAACAGCTCGATATACCTAAAA 57.444 30.769 0.00 0.00 0.00 1.52
1894 1998 8.447833 CAAAAACAACAGCTCGATATACCTAAA 58.552 33.333 0.00 0.00 0.00 1.85
1895 1999 7.065324 CCAAAAACAACAGCTCGATATACCTAA 59.935 37.037 0.00 0.00 0.00 2.69
1896 2000 6.537301 CCAAAAACAACAGCTCGATATACCTA 59.463 38.462 0.00 0.00 0.00 3.08
1897 2001 5.354234 CCAAAAACAACAGCTCGATATACCT 59.646 40.000 0.00 0.00 0.00 3.08
1898 2002 5.448632 CCCAAAAACAACAGCTCGATATACC 60.449 44.000 0.00 0.00 0.00 2.73
1899 2003 5.123344 ACCCAAAAACAACAGCTCGATATAC 59.877 40.000 0.00 0.00 0.00 1.47
1900 2004 5.250200 ACCCAAAAACAACAGCTCGATATA 58.750 37.500 0.00 0.00 0.00 0.86
1901 2005 4.079253 ACCCAAAAACAACAGCTCGATAT 58.921 39.130 0.00 0.00 0.00 1.63
1974 2082 2.346803 ACATGTCGACCACAATAGCAC 58.653 47.619 14.12 0.00 38.97 4.40
1976 2084 2.348666 GTGACATGTCGACCACAATAGC 59.651 50.000 20.54 0.00 38.97 2.97
2043 2187 8.130671 AGATACTACTTGCTACCAAACACTTA 57.869 34.615 0.00 0.00 0.00 2.24
2045 2189 6.437793 AGAGATACTACTTGCTACCAAACACT 59.562 38.462 0.00 0.00 0.00 3.55
2048 2192 7.527084 CAAGAGATACTACTTGCTACCAAAC 57.473 40.000 0.00 0.00 37.32 2.93
2258 2406 4.575645 AGCCCAACAAATCATGTGTTTTTG 59.424 37.500 0.00 5.02 42.99 2.44
2298 2446 9.927668 AACCATAAAAATCCATTTGTACTTCAG 57.072 29.630 0.00 0.00 0.00 3.02
2492 2685 5.065218 CCTTGCTCAGTGCTTACGATAAAAT 59.935 40.000 0.00 0.00 43.37 1.82
2496 2689 2.159099 CCCTTGCTCAGTGCTTACGATA 60.159 50.000 0.00 0.00 43.37 2.92
2500 2693 0.678048 CCCCCTTGCTCAGTGCTTAC 60.678 60.000 0.00 0.00 43.37 2.34
2561 2754 0.106708 ATGAGCACGTGAACACACCT 59.893 50.000 22.23 4.25 0.00 4.00
2562 2755 0.235665 CATGAGCACGTGAACACACC 59.764 55.000 22.23 0.00 35.25 4.16
2565 2758 1.207593 GGCATGAGCACGTGAACAC 59.792 57.895 22.23 7.23 44.61 3.32
2567 2760 1.230635 ACTGGCATGAGCACGTGAAC 61.231 55.000 22.23 12.50 44.61 3.18
2572 2765 2.743752 CCGAACTGGCATGAGCACG 61.744 63.158 0.00 0.00 44.61 5.34
2585 2778 3.500680 TCAGGAGCATTAACAAACCGAAC 59.499 43.478 0.00 0.00 0.00 3.95
2586 2779 3.745799 TCAGGAGCATTAACAAACCGAA 58.254 40.909 0.00 0.00 0.00 4.30
2587 2780 3.334691 CTCAGGAGCATTAACAAACCGA 58.665 45.455 0.00 0.00 0.00 4.69
2588 2781 3.747099 CTCAGGAGCATTAACAAACCG 57.253 47.619 0.00 0.00 0.00 4.44
2653 2846 1.301087 CGGGCTTGTGTCGGTAACA 60.301 57.895 0.00 0.00 34.78 2.41
2654 2847 1.005867 TCGGGCTTGTGTCGGTAAC 60.006 57.895 0.00 0.00 0.00 2.50
2655 2848 1.005867 GTCGGGCTTGTGTCGGTAA 60.006 57.895 0.00 0.00 0.00 2.85
2656 2849 0.608856 TAGTCGGGCTTGTGTCGGTA 60.609 55.000 0.00 0.00 0.00 4.02
2657 2850 1.904865 TAGTCGGGCTTGTGTCGGT 60.905 57.895 0.00 0.00 0.00 4.69
2658 2851 1.445582 GTAGTCGGGCTTGTGTCGG 60.446 63.158 0.00 0.00 0.00 4.79
2659 2852 0.038526 AAGTAGTCGGGCTTGTGTCG 60.039 55.000 0.00 0.00 0.00 4.35
2660 2853 1.429463 CAAGTAGTCGGGCTTGTGTC 58.571 55.000 0.00 0.00 37.78 3.67
2661 2854 0.034896 CCAAGTAGTCGGGCTTGTGT 59.965 55.000 0.00 0.00 40.13 3.72
2662 2855 0.673644 CCCAAGTAGTCGGGCTTGTG 60.674 60.000 0.00 0.00 40.13 3.33
2663 2856 1.677552 CCCAAGTAGTCGGGCTTGT 59.322 57.895 0.00 0.00 40.13 3.16
2664 2857 4.617875 CCCAAGTAGTCGGGCTTG 57.382 61.111 0.00 0.00 41.08 4.01
2668 2861 2.240162 GACTGGCCCAAGTAGTCGGG 62.240 65.000 0.00 0.00 46.15 5.14
2669 2862 1.218316 GACTGGCCCAAGTAGTCGG 59.782 63.158 0.00 0.00 32.48 4.79
2670 2863 0.608640 AAGACTGGCCCAAGTAGTCG 59.391 55.000 12.99 0.00 44.16 4.18
2671 2864 1.623811 TGAAGACTGGCCCAAGTAGTC 59.376 52.381 11.34 11.34 40.79 2.59
2672 2865 1.729586 TGAAGACTGGCCCAAGTAGT 58.270 50.000 0.00 0.00 0.00 2.73
2673 2866 3.012518 CAATGAAGACTGGCCCAAGTAG 58.987 50.000 0.00 0.00 0.00 2.57
2674 2867 2.879756 GCAATGAAGACTGGCCCAAGTA 60.880 50.000 0.00 0.00 0.00 2.24
2675 2868 1.915141 CAATGAAGACTGGCCCAAGT 58.085 50.000 0.00 0.00 0.00 3.16
2676 2869 0.529378 GCAATGAAGACTGGCCCAAG 59.471 55.000 0.00 0.00 0.00 3.61
2677 2870 0.112995 AGCAATGAAGACTGGCCCAA 59.887 50.000 0.00 0.00 0.00 4.12
2678 2871 0.322816 GAGCAATGAAGACTGGCCCA 60.323 55.000 0.00 0.00 0.00 5.36
2679 2872 0.034670 AGAGCAATGAAGACTGGCCC 60.035 55.000 0.00 0.00 0.00 5.80
2680 2873 1.471684 CAAGAGCAATGAAGACTGGCC 59.528 52.381 0.00 0.00 0.00 5.36
2681 2874 2.157738 ACAAGAGCAATGAAGACTGGC 58.842 47.619 0.00 0.00 0.00 4.85
2682 2875 4.154918 GGTAACAAGAGCAATGAAGACTGG 59.845 45.833 0.00 0.00 0.00 4.00
2683 2876 4.154918 GGGTAACAAGAGCAATGAAGACTG 59.845 45.833 0.00 0.00 39.74 3.51
2684 2877 4.202461 TGGGTAACAAGAGCAATGAAGACT 60.202 41.667 0.00 0.00 39.74 3.24
2685 2878 4.072131 TGGGTAACAAGAGCAATGAAGAC 58.928 43.478 0.00 0.00 39.74 3.01
2686 2879 4.365514 TGGGTAACAAGAGCAATGAAGA 57.634 40.909 0.00 0.00 39.74 2.87
2698 2891 9.152595 GTTGTTTACATTTTTCTTGGGTAACAA 57.847 29.630 0.00 0.00 37.55 2.83
2699 2892 8.532819 AGTTGTTTACATTTTTCTTGGGTAACA 58.467 29.630 0.00 0.00 39.74 2.41
2700 2893 8.936070 AGTTGTTTACATTTTTCTTGGGTAAC 57.064 30.769 0.00 0.00 0.00 2.50
2701 2894 7.916450 CGAGTTGTTTACATTTTTCTTGGGTAA 59.084 33.333 0.00 0.00 0.00 2.85
2702 2895 7.067251 ACGAGTTGTTTACATTTTTCTTGGGTA 59.933 33.333 0.00 0.00 0.00 3.69
2703 2896 6.127563 ACGAGTTGTTTACATTTTTCTTGGGT 60.128 34.615 0.00 0.00 0.00 4.51
2704 2897 6.198216 CACGAGTTGTTTACATTTTTCTTGGG 59.802 38.462 0.00 0.00 0.00 4.12
2705 2898 6.750039 ACACGAGTTGTTTACATTTTTCTTGG 59.250 34.615 0.00 0.00 33.09 3.61
2706 2899 7.483375 TGACACGAGTTGTTTACATTTTTCTTG 59.517 33.333 0.00 0.00 39.17 3.02
2707 2900 7.531716 TGACACGAGTTGTTTACATTTTTCTT 58.468 30.769 0.00 0.00 39.17 2.52
2708 2901 7.079182 TGACACGAGTTGTTTACATTTTTCT 57.921 32.000 0.00 0.00 39.17 2.52
2709 2902 7.908193 ATGACACGAGTTGTTTACATTTTTC 57.092 32.000 0.00 0.00 39.17 2.29
2710 2903 8.696410 AAATGACACGAGTTGTTTACATTTTT 57.304 26.923 0.00 0.00 39.17 1.94
2711 2904 9.790389 TTAAATGACACGAGTTGTTTACATTTT 57.210 25.926 17.10 8.10 39.17 1.82
2712 2905 9.790389 TTTAAATGACACGAGTTGTTTACATTT 57.210 25.926 16.55 16.55 39.17 2.32
2713 2906 9.445786 CTTTAAATGACACGAGTTGTTTACATT 57.554 29.630 0.00 0.00 39.17 2.71
2714 2907 8.617809 ACTTTAAATGACACGAGTTGTTTACAT 58.382 29.630 0.00 0.00 39.17 2.29
2715 2908 7.976826 ACTTTAAATGACACGAGTTGTTTACA 58.023 30.769 0.00 0.00 39.17 2.41
2716 2909 8.831000 AACTTTAAATGACACGAGTTGTTTAC 57.169 30.769 0.00 0.00 39.17 2.01
2717 2910 9.843334 AAAACTTTAAATGACACGAGTTGTTTA 57.157 25.926 0.00 0.00 39.17 2.01
2718 2911 8.643752 CAAAACTTTAAATGACACGAGTTGTTT 58.356 29.630 0.00 0.00 39.17 2.83
2719 2912 8.024285 TCAAAACTTTAAATGACACGAGTTGTT 58.976 29.630 0.00 0.00 39.17 2.83
2720 2913 7.483691 GTCAAAACTTTAAATGACACGAGTTGT 59.516 33.333 12.62 0.00 41.35 3.32
2721 2914 7.044314 GGTCAAAACTTTAAATGACACGAGTTG 60.044 37.037 17.20 4.16 43.02 3.16
2722 2915 6.970613 GGTCAAAACTTTAAATGACACGAGTT 59.029 34.615 17.20 1.61 43.02 3.01
2723 2916 6.317893 AGGTCAAAACTTTAAATGACACGAGT 59.682 34.615 17.20 0.00 43.02 4.18
2724 2917 6.725246 AGGTCAAAACTTTAAATGACACGAG 58.275 36.000 17.20 0.00 43.02 4.18
2725 2918 6.687081 AGGTCAAAACTTTAAATGACACGA 57.313 33.333 17.20 0.00 43.02 4.35
2726 2919 7.586300 CAGTAGGTCAAAACTTTAAATGACACG 59.414 37.037 17.20 5.49 43.02 4.49
2727 2920 7.860872 CCAGTAGGTCAAAACTTTAAATGACAC 59.139 37.037 17.20 10.24 43.02 3.67
2728 2921 7.936584 CCAGTAGGTCAAAACTTTAAATGACA 58.063 34.615 17.20 0.70 43.02 3.58
2746 2939 1.749634 AGCTACGTTGCTACCAGTAGG 59.250 52.381 22.92 0.00 42.10 3.18
2747 2940 2.479730 CCAGCTACGTTGCTACCAGTAG 60.480 54.545 23.66 9.86 41.98 2.57
2748 2941 1.475280 CCAGCTACGTTGCTACCAGTA 59.525 52.381 23.66 0.00 41.98 2.74
2749 2942 0.246635 CCAGCTACGTTGCTACCAGT 59.753 55.000 23.66 0.00 41.98 4.00
2750 2943 0.530744 TCCAGCTACGTTGCTACCAG 59.469 55.000 23.66 11.60 41.98 4.00
2751 2944 0.245539 GTCCAGCTACGTTGCTACCA 59.754 55.000 23.66 8.23 41.98 3.25
2752 2945 0.245539 TGTCCAGCTACGTTGCTACC 59.754 55.000 23.66 14.33 41.98 3.18
2753 2946 1.630148 CTGTCCAGCTACGTTGCTAC 58.370 55.000 23.66 18.92 41.98 3.58
2755 2948 4.996976 CTGTCCAGCTACGTTGCT 57.003 55.556 18.92 18.92 45.18 3.91
2765 2958 1.043116 TAGATGACCCCGCTGTCCAG 61.043 60.000 0.82 0.00 34.25 3.86
2766 2959 1.001120 TAGATGACCCCGCTGTCCA 59.999 57.895 0.82 0.00 34.25 4.02
2767 2960 1.742768 CTAGATGACCCCGCTGTCC 59.257 63.158 0.82 0.00 34.25 4.02
2768 2961 1.043673 ACCTAGATGACCCCGCTGTC 61.044 60.000 0.00 0.00 35.77 3.51
2769 2962 0.617820 AACCTAGATGACCCCGCTGT 60.618 55.000 0.00 0.00 0.00 4.40
2770 2963 2.212327 AACCTAGATGACCCCGCTG 58.788 57.895 0.00 0.00 0.00 5.18
2771 2964 4.809513 AACCTAGATGACCCCGCT 57.190 55.556 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.