>input_sequence_68847
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--------------------------------------------------------ATGGCCTCCTCCACGATGCCGCGC
CGCGTCGCGCTGCTCCTGCTCCTCCTGGCATCCACGCGCGCGGCGTCCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAA
GTTCCCGGCGGGGAAGACGTACGCCAAGTGCGAGGACCTCCCGCAGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGG
CCAAGTCGTCGCTCTCGCTGGCCTTCGTGGCGGCGCCGGCGGGGGCCAACGGGTGGGTGGCCTGGGCGCTGAACCCCACC
GGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGGCTCCGGCTCCGCCGCGCCCACCGTCAGGACCTACAA
CATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCGCGTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCA
GCGCCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACGGCGGGATGAAGGCCGTGAACCACATATGGCAGGTCGGC
ACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCCTTCGCCGCCGGCAACCTCGCCTCCAAGTCCAAGCTCGTCCTCTC
GGGCAAAGCGGCCTCCGCGACCTCGCCTTCGCCGGCGCCCGCCCCCATGGCCGGCGGCCCGTCCGGATCGGCCGGCAGCG
ACGGCGGCGCGGCGGCGACCACGGCGCCTTCCGCCGGCAAGTCCCCGTCGGGCGCGGCCGCGGCCGGCGTGTCGGCGCCG
GCACTCCTCGTGCTCGCGTTGATGGGCCTCCTCGCGGTAGTATGA-----------------------------------
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>chr7A_1_TraesCS7A01G255700
TAGTTGCCTATTCACCCCGCTCTAGTCAACCATATCGATCCTTTCACCGCCCCTCTTGCCCTCCGCCGCGTGAGTCGCCG
TCCAGATCCGTCGGTTCACGCGCCCTGCCGCCGGAGTTGCGCCCAGTCCCGCTGCCTCCCCTGCTTCGGCTGCAAGCACG
CGAGGCGAGGTGGAGGCCGGGGCGGGGCGGCGGTTATGGGAGGCGAAGGAGCTCGGGCTCGAGGGGCTCCTCCTCTCGAT
CTAGATCGGGCGCCGCCGTGCGTGGAGACGATGAACAGTAGCGCCGGCGAAGCAAGGGGCTTTCTGCAAAAAGAATGCCA
CATCGACAGCTGACATGCGGGCCCCGCCGGTCAGATACACCGTCAATACGCGTTTATACGCGATTTAGACCTTTTTGTAA
CGTCTAGCCCCAGACTTAGTACTGACACATAAAAATTATCAAACTTGATACCAATCTGCTTCCAATGCTCCAATTGTGAT
ACTTATGTGCAATTTACTTCATCGTCTGGCTTCAAAGTGAGTGAGTGGCGAGTTATCGGTGGCACAAAGTACAGACCATG
CCTAATACTCCGAGCTGGGAGTAAAATCATAACGTCTTCAGAAATTTCGAGCTGGACAAGTTCACCACTCACCATCCCAG
GCTTTGATTGATGGATTCCGTTTGAAACCCCG---GACATCCGTGGCCAGCACACGCACACCAAACTCG-----CAGGAG
CCACAACTCATTTCAACCCATTTCTTATCTTTTTATCGCCGACATGTCATTACACTGACCTAGAAAGGTGTCATTAGTCA
TT-ACACCTAACCAAATCCAGACCTAAGCAACGAGAGAAAGCACACATTTAAACAGAAACCCACCTAAAATCTTCGAAAA
TTACACACAGCCCCACCTCCCCTCTTATAAAACCCCTCACCCTCCCCCGTCCTCACC---CCTCACTGACACTCCCAGCA
CTCGCACGCTCCAAGGCCTCACTCAC----CAGCGACACCCCGAATCCAGCGGCGTATGGCCTCCTCCACGATGCCGCGC
CGCGTCGCGCTGCTCCTGCTCCTCCTGGCATCCACGCGCGCGGCGTCCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAA
GTTCCCGGCGGGGAAGACGTACGCCAAGTGCGAGGACCTCCCGCAGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGG
CCAAGTCGTCGCTCTCGCTGGCCTTCGTGGCGGCGCCGGCGGGGGCCAACGGGTGGGTGGCCTGGGCGCTGAACCCCACC
GGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGGCTCCGGCTCCGCCGCGCCCACCGTCAGGACCTACAA
CATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCGCGTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCA
GCGCCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACGGCGGGATGAAGGCCGTGAACCACATATGGCAGGTCGGC
ACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCCTTCGCCGCCGGCAACCTCGCCTCCAAGTCCAAGCTCGTCCTCTC
GGGCAAAGCGGCCTCCGCGACCTCGCCTTCGCCGGCGCCCGCCCCCATGGCCGGCGGCCCGTCCGGATCGGCCGGCAGCG
ACGGCGGCGCGGCGGCGACCACGGCGCCTTCCGCCGGCAAGTCCCCGTCGGGCGCGGCCGCGGCCGGCGTGTCGGCGCCG
GCACTCCTCGTGCTCGCGTTGATGGGCCTCCTCGCGGTAGTATGATGGCAT-----------------------------
-----------------------------------------------------ACAATATATTTGTTCCATTTTTGTCGA
TCGATCTTGCT-----GCCTATTCTTTTTCCTAATTTCGTTTGAAATAAAAGATGGTTGGTGTACGGAGCTGTTGTTTTT
AGGTATATCGAGCTGTTGTTTTTGGGTAGACGTACGTAGTACGTAGTAT----GTACTGCTAGCAGTCGGTGATTATTGT
AGTG-------------------------------CTATTGTGGTCGACATGTCACTGAATTTATCATATGACTG-----
ATATATTTTTTATCATCAGAGGAGTATAAGTGTTTGGTAGCAAGTAGTATCTCTTGCATTCTGTGCAGTGCAGTTGCCCG
ATCTGGCCTAGTGATACACGCTGATTCGATTTGTTTAAAGCCCGGGCACCTTGTGAGAAGCACCAGCGTCA-ACTAGGGT
CCCTGTCATTCGCAAGAGTT-GAAATATAGGAATGCAAAAAAAA-TTCACGGATGAGAGTGTCATGTACACTTGAT-TGT
GTAAACAAAAACACATGATTTGTTGGGCTTGATGGGAAATGCAGTCTGAAGTACAAATGGATTTTTATGGTTTGCAATTT
CTACTA-----------------------------ATCAAAATACACACCTAGAAAAAAAA-TCATAAGGATTTGAATCC
TCCGGAATTACTTTTAAAAATTCTGTAG-TCAAAAAGGCCTTTGCCTTTTTCCCGCAAAATGAAAAGGCCTTTACCTTAC
ATTTT--TTGAAGGGCATCATCTGATTTA----------TT--TATTTTATCGTAAGCACTGAGCAAGGGGGCAATTGTG
TCCCACATTGGCAGGTCATCAACAGGGATTTCTAGGTGTGTTCACGTGCTCATGCCAGTTCGGTTTGTTAATGCTCCTGA
GCCGGTCAGTGAGCCCAGCCCGAGACCCCGGGTAGATATTTTCTTTGTTACCGACACAAGCCCGACTACTTGGGCCAGTC
TTCATTGCTCTTGTTACCCAAGAAAAATGTAAACAACTCGTGTCATTTAAAGTTTTGACCTACTGGTAGCAACGTAGCTG
GACAGCGGGGTCATCTAGGTT
>chr7D_504
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-----------------------GTCTAGCTTCAAAGTGAGTGAGTGGCGAGTTATCGGTGGCACAAAGTACAGACCATG
CGTAATAAAATCATTACTTGGTGCTTCT---ACGTCTTCAGAAATTTCGAGCTGGACAAGTTCACCACTCACCATCTCAG
GCTTTGATTGATGGATTCCGTTTGAAACCCCG---GACATCCGTGGTCAGCACACGCACACCAAACTCACGGAACAGGAG
TCACAACTCATTTCAACCAATTTT-----TTTTTATCGCCGACAT--------ACTGACCCAGAAAGGTGTCATTAGCCA
TTAACACCTAACCAAATCCAGACCTA-GCAACGAGAGAAAACACACATTTGACCACAAACCCACCTAAAATCTTCGAAAA
TTACGCACAGCCCCACCTCCCCTGTTATAAAA--CCTCACCCTCCCCCGTCCTCATC---CCTCACTGACACTCCAAGCA
CTAGCACGCTCCAAGGCCTCACTCACTCACCAGCGACACCCCGAATCCAGCGGCATATGGCCTCCTCCACGATGCCGCGC
CACATCGCTCTCCTCCTGCTCCTCCTGGCGTCCACGCGCGCGGCGTCCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAA
GTTCCCGGCGGGGAAGACATATGCCAAGTGCGAGGACCTCCCGCAGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGG
CCAAGTCGTCGCTCTCGCTGGCGTTCGTGGCGGCGCCGGCGGGTGCCAACGGGTGGGTGGCCTGGGCGCTGAACCCCACC
GGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGGCTCCGGCTCCGCCGCCCCCACCGTTAGGACGTACAA
CATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCGCCTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCA
GCGGCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACAGCGGGATGAAGGCGGTGAACCACATATGGCAGGTCGGC
ACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCCTTCGCCGCCGGCAACCTCGCCTCGAAGTCCAAGCTCGTCCTCTC
GGGCAAAGCGGCCTCCGCGGCCTCGCCTTCGCCGGCGCCCGCCCCCATGGCCGGTGGCCCGTCCGGATCGGCCGGCAGCG
ACGGCGGCGCTTCGGCGACCACGGCGCCTTCAGCCGGCAAGTCCCCGTCGGGCGCGGCCGCGGTCGGCGTGTCGGCGCCG
GCACTCCTCGTGCTCGCGTTGATGGGCCTCCTCGCGGTGGTATGATGGCATTTCCTGGCGGTAGCACGAATGAATGAGTA
CGTACTATAATTAGTGGAGGTGGCAGTGGGCATGGGGAGGAAGCATTTCTTGAACAATATATTTGTTCCATTTTTGTCGA
TCGATCTTGCTATGCTGCCTATTCTTTTTCCTAATTTCGTTTGAAATAAAAGATGGTTTGCGTACTAATTATTAT-----
-----TATCGAGCTGTTGTTTTTAGGTAGAAGTACGTAGCACC---------------GCTAGCAGTTGGTGATTATTGT
ATTTTTTTTTGCGAGAGGTGATTATTGTAGTAGTACTATTGTGGTCGACATGTCACTGAATTTGTCATATGACTAATAAG
-TATAAATTTTATCATCAAAGGAGCAAATGTTTGGTAGTGCAAGTAGTATCTCTCGCATTCTGTGCAGTGCAGTTGCCCG
ATCTGACCTAGTGATACACGCTGATTCGATTTGTTTAAAGCCCGGGCACCGAGTGAGAAGCACCAGCCTCA-TCTATGGT
CCCTGTCATTCGCAAGAGTTTGAAATATAGGAATGCAAAAAAAAAATCACGCATTAGAATGTCATGTACACTTGAT-TGT
GTAAATAAAAACACATGATTTGTTGGGCTTGATGGGAAATGCAGTATGAAGTACAAATGAATCTTTATGGTTTGCAATTT
CTACTAATCTCTTGTTTCAAAAAAAAATTCTACTAATCAAACAACACACCTAGAAGAAAAAATCATAAGGGTGTGAATCC
TCCAAAATTATTTTTAAAAATTCTTTGAATCAAAAAGGCCTTTGCCTTTTTCCCGCAAGATGAAAAGGCCTTTACCTTTC
ATTTT--CTGAAGGGCATCATTTTCATTACACGTTTGATTT--TTTTTAATCATAAGCACTGAGCAAGGAGGCGATTGTG
TTCCACATTGGCAGCTCATCAACAGGGATTTCT--GTCTCTTCATGTGCTCATGCCA-----GTTTGTTAATGCTCCTGA
GCCGGTCAGTCAGTCCAGCCCGAGACCCCGGGTAGATATTTTCTT-----------------------------------
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>chr7B_648
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-------TTGATGGATTCCGTTTGAAACCCCGCCGGACATCCGTGGCCAGCACGCGCACACCAAACTCAC-----AGGAG
TCGCAACTCATTTCAACCCATTTT-----TA---ATCGCCGACAT-TCACTGCACTGACCTAGAAAGGTTTCATTAGTCA
TTA-CACGTAACCAAATCCAGACCTA-GCAACGAGAGAAAACACACATTTAACCACAAACCCACCTAAAATCTTCGAAAA
TTACGCATAGCCCCACCTCCCCTGTTATAAAA--CCTCACCCTCACCCGTCCTCACCCCTCCTCACTGACACTCCAAGCA
CTCGCACGCTCCAAGGCCTCACTCACTCACCAGTGACACCCCGAATCT--CGGCGTATGG---CCTCCACGATGCCGCAC
CGCATCGCGCTGCTCCTGCTCCTCCTGGCGTCCACGCGCGCGGCGACCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAA
GTTCCCGGCGGGGAAGACGTACGCCAAGTGCGAGGACCTCCCGCAGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGG
CCAAGTCATCGCTCTCGCTGGCCTTCGTGGCGGCGCCGGCGGGTACCAACGGGTGGGTGGCCTGGGCCCTCAACCCCACG
GGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGGCTCCGGCTCCGCCGCGCCCACCGTCAGGACGTACAA
CATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCGCGTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCA
GCGGCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACAGCGGGATGAAGGCGGTGAACCACATATGGCAGGTCGGC
ACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCTTTCGCCGCCGGCAACCTCGCCTCCAAGTCCAAGCTCGTCCTCTC
GGGCAAAGCGGCCTCCGCGACCTCGCCTTCGCCGGCGCCCGCCCCCATGGCCGGTGGGCCGTCCGGATCGGCCGGCAGCG
ACGGCGGCGCGTCGGCGACCACGGCGCCTTCCGCCGGCAAGTCCCCGTCGGGCGCGGCCGCGGTCGGCGTGTCGGCGCCG
GCACTCCTTGTGCTCGCGTTGATGGGACTCCTCGCGGTAGTATGATGGCATTCCCTGGCGGTAGCACGAATGAATGAGTA
CGTACTATAATTAGTGGAGGTGGCAGTGGGCATGGGGAGGAAGCATTTCTCGAACAATATA-TTGTTCCATTTTTGTCGA
TCGATCTTGCTATGCTGCCTATTCTTTTTCCTAATTTCGTTTGAAATAAAAGATGGTTTGCGTACTAATTATCAT-----
-----TATCGAGCTGTTGTTTTTAGGTAGAAGTACGTAGTACGTAGTAACGTAGTACTGCTAGCAGTCGGTGATTATT--
-----------------------------GTAGTACTATTGTGGTCGACATGTCACTGAATTTATC-TATGACTAATATA
ATATAATTTTTATTATCAGAGGCGCAAGTGTTTGGTAGTGCAAGTAGTATCTCTTGCATTCTGTGCAGTGCAGTTGCCCG
ATCTGGCCTAGTGACACACGCTGATTCGATTTATTTAAAGCCCGGGCACCGAGCGAGAAGCACCAGCGTCAAACTAGGGT
CCCTGTCATTCGCGAGATTTTGAAATATAGTAACGC-----AAAATTCACGGATTAGAGTGTCACGGACACTTATTGTGT
GTGAATAAAAACACATGATTTGTTGGGTTTGATGGGAAATGCAGTATGAAGTACAAATGAATTTTTATGGTTTGCAAT--
---------------------------TTCTACTAATCGAACAACACACCTAGAA--AAAAAACATAAGGATTTGAATCC
TCCAAATTTTTCAATAATTC-----TGAATCAAAAAGGCCTTTGCCTTTTTCCCGCGAAA--AATAGGCCTTTACCCTTC
ATTTTTTTTGAAGGGCATCACTTTCATTACACGTTTGATTTATTTTTTAGTCATGAACACTGAGCAAGGAGGCAGTTGTG
TCCCACATTGGCAGGTCATCAACAGGGAATACT--GCCTCTTCATGTGCTCATGCCA-----GTTTGTTAATGCTCCTGA
GCCGGTCAGTGAGTCCAGCCCGAGACCCCGGGTAGATATTTT--------------------------------------
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>chr5A_1073
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------------------------------------------------GCGGCCGCGGGCGGCGCCTGCAAGAGCGAGAA
GTTCCCGGCCGGCAAGAGCTACGAGACGTGCGCGGACCTCCCGGCCCTCGGCGCCGCGCTGCACTGGACCTACGACGCGG
CGGCCTCGTCGCTCTCCGTGGCGTTCGCGGCCAAGCCGGCCAGCGGCGCCGGCTGGGTGTCGTGGGGGATCAACCCCACC
GGCGACGGCATGAAGGGCGCGCAGGCGCTCCTCGCCTTCAAGAGCGGCGCCACGTACGT------CGTCAACACGTACAA
CCTCACCGGGTACAAGCCCCTCAGCGCGACGTCCACGCCCATCGCGTTCAAGGCCACCGGGCTCGCCGCCGACGAGGGCG
CCGGCGGGAAGGTGCGGCTCTACGGCACGCTGCAGCTGCCCAAGGGCATGGAGTCCGTGAACCACATCTGGCAAGTGGGG
TCCGCGGTGGCCGGCGGGGTGCCGGCCAAGCACGCATTCGCGCAGGAGAACCTGGATGCCAAGGGCAAGCTCGTGCTC--
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>chr5D_1073
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------------------------------------------------GCGGCCGCGGGCGGCGCCTGCAAGAGCGAGAA
GTTCCCGGCTGGCAAGAGCTACGAGACGTGCGCGGACCTCCCGGCCCTCGGCGCCGCGCTGCACTGGACCTACGACGCGG
CGGCCTCGTCGCTCTCCGTGGCGTTCGCGGCCAAGCCGGCGAGCGGTGCCGGCTGGGTGTCGTGGGGGATCAACCCCACC
GGCGACGGCATGAAGGGCGCGCAGGCGCTCCTCGCCTTCAAGAGCGGCGCCACGTACGT------CGTCAACACGTACAA
CCTCACCGGGTACAAGCCGCTCAGCCCGGCGTCCACGCCGATAGCGTTCAAGGCCACCGGGCTCGCCGCCGACGAGGGCG
CCGGCGGGAAGGTGCGGCTCTACGGCACGCTGCAGCTGCCCAAGGGCATGGAGTCCGTGAACCACATCTGGCAGGTGGGG
TCCGCGGTGGCCAACGGGGTGCCGGCCAAGCACGCGTTCGGGCAGGAGAACCTGGATGCCAAGGGCAAGCTCGTGCTC--
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----S----------------------------------------------------
-S-----SSSSS-SSSSSSS--SSSSSSSSS---------------------------------------------S---
--------------------------------------------------------------------S-----------
S----------------------SSSSSS----------------S---S-S----------------------------
--------------------------S-------------S-----------S--S------------------------
----S------------------S--------SS-----------------------------------------S----
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---S-------------------------S--------------------------------------------------
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-------------------------------------------S------------------------------------
--------------------------------------------------------------------------S-----
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---S-------------------------------------S--------------------------------------
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------------------------------------------------------S-------------------------
-----------S---------------------------------------------------S----------------
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----------------------------------------------------------S-S----SS-SSSS-SSSSSSS
SSSSS------------------S------S-----------------S-------------------------------
-S-S----------------------------------------------------------------------S-----
-----S------------------S-S-S--S-SSSSSS-----------------------------------------
--------------------------------------------------SS----------------------------
------------------------------------------------------S-------------------------
-----S---------------------------------------S-------------S--------------------
-----------------------------------------SS------------S------------------------
---SS-----S-------------S-SS--------------------------------------------------S-
---------------------S-SSS------------------S---S---S----------------S----------
---------------------------------SS--S-S----S------------SSSSS------------------
-------------S-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_333
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-------------------------------------------------------------------------AATGCCA
CATCGACAGCTGA-------------------------------------------------------------------
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>reverse_1355
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--------------------------------------------------------------------------CTACAA
CATCACCGGCTACGT-----------------------------------------------------------------
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>forward_579
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-------------------------------------------------------------------------------G
CCTAATACTCCGAGCTGGG-------------------------------------------------------------
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>reverse_2754
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---------------------------------AGGTGTGTTCACGTGCTCAT---------------------------
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