Multiple sequence alignment - TraesCS7A01G238800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G238800 chr7A 100.000 1422 0 0 968 2389 211718395 211716974 0.000000e+00 2627
1 TraesCS7A01G238800 chr7A 100.000 709 0 0 1 709 211719362 211718654 0.000000e+00 1310
2 TraesCS7A01G238800 chr7A 95.112 491 23 1 1 490 47036006 47035516 0.000000e+00 773
3 TraesCS7A01G238800 chr7A 94.867 487 24 1 1 487 404470198 404469713 0.000000e+00 760
4 TraesCS7A01G238800 chr7A 96.026 453 17 1 1 452 47043939 47043487 0.000000e+00 736
5 TraesCS7A01G238800 chr7A 89.565 230 24 0 2160 2389 670799387 670799158 2.320000e-75 292
6 TraesCS7A01G238800 chr7A 88.696 230 26 0 2160 2389 670781508 670781737 5.030000e-72 281
7 TraesCS7A01G238800 chr7A 86.567 134 18 0 1885 2018 48168568 48168435 5.320000e-32 148
8 TraesCS7A01G238800 chr7B 98.916 1292 5 1 1107 2389 697087280 697085989 0.000000e+00 2300
9 TraesCS7A01G238800 chr7B 97.602 709 13 2 1 709 697088020 697087316 0.000000e+00 1212
10 TraesCS7A01G238800 chr2B 90.875 1074 84 6 1318 2387 367792649 367791586 0.000000e+00 1428
11 TraesCS7A01G238800 chr1A 95.306 490 23 0 1 490 300564924 300564435 0.000000e+00 778
12 TraesCS7A01G238800 chr1A 94.070 489 29 0 1 489 66178117 66177629 0.000000e+00 743
13 TraesCS7A01G238800 chr1A 93.712 493 29 2 1 493 469308004 469308494 0.000000e+00 737
14 TraesCS7A01G238800 chr3A 94.683 489 23 3 1 487 508533058 508532571 0.000000e+00 756
15 TraesCS7A01G238800 chr3A 92.754 69 5 0 419 487 114048294 114048226 1.510000e-17 100
16 TraesCS7A01G238800 chr5A 93.103 493 32 1 1 491 576587804 576588296 0.000000e+00 721
17 TraesCS7A01G238800 chr5A 86.567 134 18 0 1885 2018 536817967 536817834 5.320000e-32 148
18 TraesCS7A01G238800 chr2D 79.665 477 72 17 1920 2387 287138503 287138043 1.070000e-83 320
19 TraesCS7A01G238800 chr4B 76.456 412 64 23 1807 2193 535336604 535336201 2.420000e-45 193
20 TraesCS7A01G238800 chr6B 85.906 149 20 1 1870 2018 648642112 648642259 8.840000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G238800 chr7A 211716974 211719362 2388 True 1968.5 2627 100.000 1 2389 2 chr7A.!!$R6 2388
1 TraesCS7A01G238800 chr7B 697085989 697088020 2031 True 1756.0 2300 98.259 1 2389 2 chr7B.!!$R1 2388
2 TraesCS7A01G238800 chr2B 367791586 367792649 1063 True 1428.0 1428 90.875 1318 2387 1 chr2B.!!$R1 1069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 999 0.403655 TGCAGGCTTGTTGTATCCCA 59.596 50.0 0.0 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 1855 4.037208 CCATCTTTCATATGTTGCTCCCAC 59.963 45.833 1.9 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.098807 ACAACCAACCCACAATGTCTAAAC 59.901 41.667 0.00 0.00 0.00 2.01
153 154 4.467084 GGACCGCCGCCTCATCAA 62.467 66.667 0.00 0.00 0.00 2.57
406 407 6.607019 ACAATCCACTGGAAAACTTAGGTTA 58.393 36.000 0.66 0.00 34.34 2.85
501 502 1.665161 CGCTCTAACCGTCAAAGTCGT 60.665 52.381 0.00 0.00 0.00 4.34
588 589 3.193691 ACGCCAAGATAGATTATCTCCCG 59.806 47.826 0.00 5.63 44.44 5.14
984 985 3.053828 CTTTGGTTGGGCTGCAGG 58.946 61.111 17.12 0.00 0.00 4.85
985 986 3.230522 CTTTGGTTGGGCTGCAGGC 62.231 63.158 30.97 30.97 40.90 4.85
986 987 3.754586 TTTGGTTGGGCTGCAGGCT 62.755 57.895 35.64 0.00 41.46 4.58
987 988 3.754586 TTGGTTGGGCTGCAGGCTT 62.755 57.895 35.64 0.00 41.46 4.35
988 989 3.688159 GGTTGGGCTGCAGGCTTG 61.688 66.667 35.64 2.46 41.46 4.01
989 990 2.914097 GTTGGGCTGCAGGCTTGT 60.914 61.111 35.64 0.00 41.46 3.16
990 991 2.123338 TTGGGCTGCAGGCTTGTT 60.123 55.556 35.64 0.00 41.46 2.83
991 992 2.500714 TTGGGCTGCAGGCTTGTTG 61.501 57.895 35.64 0.00 41.46 3.33
992 993 2.914097 GGGCTGCAGGCTTGTTGT 60.914 61.111 35.64 0.00 41.46 3.32
993 994 1.603455 GGGCTGCAGGCTTGTTGTA 60.603 57.895 35.64 0.00 41.46 2.41
994 995 0.967380 GGGCTGCAGGCTTGTTGTAT 60.967 55.000 35.64 0.00 41.46 2.29
995 996 0.453390 GGCTGCAGGCTTGTTGTATC 59.547 55.000 31.40 1.90 41.46 2.24
996 997 0.453390 GCTGCAGGCTTGTTGTATCC 59.547 55.000 17.12 0.00 38.06 2.59
997 998 1.098050 CTGCAGGCTTGTTGTATCCC 58.902 55.000 5.57 0.00 0.00 3.85
998 999 0.403655 TGCAGGCTTGTTGTATCCCA 59.596 50.000 0.00 0.00 0.00 4.37
999 1000 1.098050 GCAGGCTTGTTGTATCCCAG 58.902 55.000 0.00 0.00 0.00 4.45
1000 1001 1.340017 GCAGGCTTGTTGTATCCCAGA 60.340 52.381 0.00 0.00 0.00 3.86
1001 1002 2.684927 GCAGGCTTGTTGTATCCCAGAT 60.685 50.000 0.00 0.00 0.00 2.90
1002 1003 2.947652 CAGGCTTGTTGTATCCCAGATG 59.052 50.000 0.00 0.00 0.00 2.90
1003 1004 2.092212 AGGCTTGTTGTATCCCAGATGG 60.092 50.000 0.00 0.00 0.00 3.51
1004 1005 1.678101 GCTTGTTGTATCCCAGATGGC 59.322 52.381 0.00 0.00 0.00 4.40
1005 1006 1.942657 CTTGTTGTATCCCAGATGGCG 59.057 52.381 0.00 0.00 0.00 5.69
1006 1007 0.463654 TGTTGTATCCCAGATGGCGC 60.464 55.000 0.00 0.00 0.00 6.53
1007 1008 1.227527 TTGTATCCCAGATGGCGCG 60.228 57.895 0.00 0.00 0.00 6.86
1008 1009 3.044305 GTATCCCAGATGGCGCGC 61.044 66.667 25.94 25.94 0.00 6.86
1009 1010 3.233980 TATCCCAGATGGCGCGCT 61.234 61.111 32.29 12.85 0.00 5.92
1010 1011 3.226429 TATCCCAGATGGCGCGCTC 62.226 63.158 32.29 21.73 0.00 5.03
1021 1022 3.257561 CGCGCTCGTCCTCCAATG 61.258 66.667 5.56 0.00 0.00 2.82
1022 1023 3.567797 GCGCTCGTCCTCCAATGC 61.568 66.667 0.00 0.00 0.00 3.56
1023 1024 2.185350 CGCTCGTCCTCCAATGCT 59.815 61.111 0.00 0.00 0.00 3.79
1024 1025 2.169789 CGCTCGTCCTCCAATGCTG 61.170 63.158 0.00 0.00 0.00 4.41
1025 1026 1.817099 GCTCGTCCTCCAATGCTGG 60.817 63.158 0.00 0.00 45.08 4.85
1035 1036 0.458669 CCAATGCTGGAGATGTTGGC 59.541 55.000 0.00 0.00 46.92 4.52
1036 1037 1.471119 CAATGCTGGAGATGTTGGCT 58.529 50.000 0.00 0.00 0.00 4.75
1037 1038 2.646930 CAATGCTGGAGATGTTGGCTA 58.353 47.619 0.00 0.00 0.00 3.93
1038 1039 2.338577 ATGCTGGAGATGTTGGCTAC 57.661 50.000 0.00 0.00 0.00 3.58
1039 1040 1.279496 TGCTGGAGATGTTGGCTACT 58.721 50.000 0.01 0.00 0.00 2.57
1040 1041 2.466846 TGCTGGAGATGTTGGCTACTA 58.533 47.619 0.01 0.00 0.00 1.82
1041 1042 3.041211 TGCTGGAGATGTTGGCTACTAT 58.959 45.455 0.01 0.00 0.00 2.12
1042 1043 3.070159 TGCTGGAGATGTTGGCTACTATC 59.930 47.826 0.01 2.67 0.00 2.08
1043 1044 3.556004 GCTGGAGATGTTGGCTACTATCC 60.556 52.174 0.01 5.88 0.00 2.59
1044 1045 2.972713 TGGAGATGTTGGCTACTATCCC 59.027 50.000 12.33 10.73 0.00 3.85
1045 1046 2.972713 GGAGATGTTGGCTACTATCCCA 59.027 50.000 0.01 0.00 0.00 4.37
1046 1047 3.391296 GGAGATGTTGGCTACTATCCCAA 59.609 47.826 0.01 0.00 38.71 4.12
1050 1051 1.974028 TTGGCTACTATCCCAACCCA 58.026 50.000 0.00 0.00 36.25 4.51
1051 1052 2.206322 TGGCTACTATCCCAACCCAT 57.794 50.000 0.00 0.00 0.00 4.00
1052 1053 2.054799 TGGCTACTATCCCAACCCATC 58.945 52.381 0.00 0.00 0.00 3.51
1053 1054 2.339769 GGCTACTATCCCAACCCATCT 58.660 52.381 0.00 0.00 0.00 2.90
1054 1055 2.303311 GGCTACTATCCCAACCCATCTC 59.697 54.545 0.00 0.00 0.00 2.75
1055 1056 2.303311 GCTACTATCCCAACCCATCTCC 59.697 54.545 0.00 0.00 0.00 3.71
1056 1057 1.424638 ACTATCCCAACCCATCTCCG 58.575 55.000 0.00 0.00 0.00 4.63
1057 1058 1.062428 ACTATCCCAACCCATCTCCGA 60.062 52.381 0.00 0.00 0.00 4.55
1058 1059 2.260822 CTATCCCAACCCATCTCCGAT 58.739 52.381 0.00 0.00 0.00 4.18
1059 1060 1.522900 ATCCCAACCCATCTCCGATT 58.477 50.000 0.00 0.00 0.00 3.34
1060 1061 0.837272 TCCCAACCCATCTCCGATTC 59.163 55.000 0.00 0.00 0.00 2.52
1061 1062 0.179018 CCCAACCCATCTCCGATTCC 60.179 60.000 0.00 0.00 0.00 3.01
1062 1063 0.839946 CCAACCCATCTCCGATTCCT 59.160 55.000 0.00 0.00 0.00 3.36
1063 1064 1.212935 CCAACCCATCTCCGATTCCTT 59.787 52.381 0.00 0.00 0.00 3.36
1064 1065 2.438021 CCAACCCATCTCCGATTCCTTA 59.562 50.000 0.00 0.00 0.00 2.69
1065 1066 3.467803 CAACCCATCTCCGATTCCTTAC 58.532 50.000 0.00 0.00 0.00 2.34
1066 1067 2.047830 ACCCATCTCCGATTCCTTACC 58.952 52.381 0.00 0.00 0.00 2.85
1067 1068 1.000955 CCCATCTCCGATTCCTTACCG 59.999 57.143 0.00 0.00 0.00 4.02
1068 1069 1.687123 CCATCTCCGATTCCTTACCGT 59.313 52.381 0.00 0.00 0.00 4.83
1069 1070 2.545952 CCATCTCCGATTCCTTACCGTG 60.546 54.545 0.00 0.00 0.00 4.94
1070 1071 2.133281 TCTCCGATTCCTTACCGTGA 57.867 50.000 0.00 0.00 0.00 4.35
1071 1072 2.022195 TCTCCGATTCCTTACCGTGAG 58.978 52.381 0.00 0.00 0.00 3.51
1072 1073 0.458669 TCCGATTCCTTACCGTGAGC 59.541 55.000 0.00 0.00 0.00 4.26
1073 1074 0.174845 CCGATTCCTTACCGTGAGCA 59.825 55.000 0.00 0.00 0.00 4.26
1074 1075 1.278238 CGATTCCTTACCGTGAGCAC 58.722 55.000 0.00 0.00 0.00 4.40
1088 1089 3.936653 GCACGCGCTAGCATATGA 58.063 55.556 16.45 0.00 45.49 2.15
1089 1090 1.777819 GCACGCGCTAGCATATGAG 59.222 57.895 16.45 2.40 45.49 2.90
1090 1091 1.777819 CACGCGCTAGCATATGAGC 59.222 57.895 16.45 6.62 45.49 4.26
1091 1092 1.373497 ACGCGCTAGCATATGAGCC 60.373 57.895 16.45 1.50 45.49 4.70
1092 1093 1.373371 CGCGCTAGCATATGAGCCA 60.373 57.895 16.45 0.00 45.49 4.75
1093 1094 1.349982 CGCGCTAGCATATGAGCCAG 61.350 60.000 16.45 0.00 45.49 4.85
1094 1095 1.633852 GCGCTAGCATATGAGCCAGC 61.634 60.000 16.45 7.46 44.21 4.85
1095 1096 0.037512 CGCTAGCATATGAGCCAGCT 60.038 55.000 16.45 0.00 45.23 4.24
1096 1097 1.607509 CGCTAGCATATGAGCCAGCTT 60.608 52.381 16.45 0.00 45.23 3.74
1097 1098 2.075338 GCTAGCATATGAGCCAGCTTC 58.925 52.381 10.63 0.00 44.26 3.86
1098 1099 2.335752 CTAGCATATGAGCCAGCTTCG 58.664 52.381 6.97 0.00 38.47 3.79
1099 1100 0.755079 AGCATATGAGCCAGCTTCGA 59.245 50.000 6.97 0.00 32.52 3.71
1100 1101 1.139654 AGCATATGAGCCAGCTTCGAA 59.860 47.619 6.97 0.00 32.52 3.71
1101 1102 2.149578 GCATATGAGCCAGCTTCGAAT 58.850 47.619 6.97 0.00 0.00 3.34
1102 1103 2.551459 GCATATGAGCCAGCTTCGAATT 59.449 45.455 6.97 0.00 0.00 2.17
1103 1104 3.608707 GCATATGAGCCAGCTTCGAATTG 60.609 47.826 6.97 0.23 0.00 2.32
1104 1105 0.737219 ATGAGCCAGCTTCGAATTGC 59.263 50.000 0.00 0.00 0.00 3.56
1105 1106 0.321919 TGAGCCAGCTTCGAATTGCT 60.322 50.000 6.11 6.11 40.54 3.91
1503 1513 3.556423 GGCTCTCGAAGAAAAGTTGGGTA 60.556 47.826 0.00 0.00 34.09 3.69
1841 1855 6.151648 AGGATATTGTGTCTCCAAACATGTTG 59.848 38.462 12.82 6.46 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.827898 CTCCCTGCCGACGTCCTC 61.828 72.222 10.58 2.17 0.00 3.71
121 122 2.029844 GTCCAGGCGCAACAGTCTC 61.030 63.158 10.83 0.00 0.00 3.36
501 502 2.718731 CAACCAAAGACCGCGCAA 59.281 55.556 8.75 0.00 0.00 4.85
600 601 5.046159 AGACGGGTATGTAATGTTCTTTGGA 60.046 40.000 0.00 0.00 0.00 3.53
967 968 3.053828 CCTGCAGCCCAACCAAAG 58.946 61.111 8.66 0.00 0.00 2.77
968 969 3.233231 GCCTGCAGCCCAACCAAA 61.233 61.111 8.66 0.00 34.35 3.28
969 970 3.754586 AAGCCTGCAGCCCAACCAA 62.755 57.895 8.66 0.00 45.47 3.67
970 971 4.223125 AAGCCTGCAGCCCAACCA 62.223 61.111 8.66 0.00 45.47 3.67
971 972 3.688159 CAAGCCTGCAGCCCAACC 61.688 66.667 8.66 0.00 45.47 3.77
972 973 2.501602 AACAAGCCTGCAGCCCAAC 61.502 57.895 8.66 0.00 45.47 3.77
973 974 2.123338 AACAAGCCTGCAGCCCAA 60.123 55.556 8.66 0.00 45.47 4.12
974 975 2.350511 TACAACAAGCCTGCAGCCCA 62.351 55.000 8.66 0.00 45.47 5.36
975 976 0.967380 ATACAACAAGCCTGCAGCCC 60.967 55.000 8.66 0.77 45.47 5.19
976 977 0.453390 GATACAACAAGCCTGCAGCC 59.547 55.000 8.66 0.00 45.47 4.85
977 978 0.453390 GGATACAACAAGCCTGCAGC 59.547 55.000 8.66 3.91 44.25 5.25
978 979 1.098050 GGGATACAACAAGCCTGCAG 58.902 55.000 6.78 6.78 39.74 4.41
979 980 0.403655 TGGGATACAACAAGCCTGCA 59.596 50.000 0.00 0.00 39.74 4.41
980 981 1.098050 CTGGGATACAACAAGCCTGC 58.902 55.000 0.00 0.00 39.74 4.85
981 982 2.787473 TCTGGGATACAACAAGCCTG 57.213 50.000 0.00 0.00 39.74 4.85
982 983 2.092212 CCATCTGGGATACAACAAGCCT 60.092 50.000 0.00 0.00 40.01 4.58
983 984 2.301346 CCATCTGGGATACAACAAGCC 58.699 52.381 0.00 0.00 40.01 4.35
984 985 1.678101 GCCATCTGGGATACAACAAGC 59.322 52.381 0.00 0.00 40.01 4.01
985 986 1.942657 CGCCATCTGGGATACAACAAG 59.057 52.381 0.00 0.00 40.01 3.16
986 987 2.016604 GCGCCATCTGGGATACAACAA 61.017 52.381 0.00 0.00 40.01 2.83
987 988 0.463654 GCGCCATCTGGGATACAACA 60.464 55.000 0.00 0.00 40.01 3.33
988 989 1.498865 CGCGCCATCTGGGATACAAC 61.499 60.000 0.00 0.00 40.01 3.32
989 990 1.227527 CGCGCCATCTGGGATACAA 60.228 57.895 0.00 0.00 40.01 2.41
990 991 2.421314 CGCGCCATCTGGGATACA 59.579 61.111 0.00 0.00 40.01 2.29
991 992 3.044305 GCGCGCCATCTGGGATAC 61.044 66.667 23.24 0.00 40.01 2.24
992 993 3.226429 GAGCGCGCCATCTGGGATA 62.226 63.158 30.33 0.00 40.01 2.59
993 994 4.615815 GAGCGCGCCATCTGGGAT 62.616 66.667 30.33 5.17 40.01 3.85
1004 1005 3.257561 CATTGGAGGACGAGCGCG 61.258 66.667 8.75 8.75 44.79 6.86
1005 1006 3.567797 GCATTGGAGGACGAGCGC 61.568 66.667 0.00 0.00 0.00 5.92
1006 1007 2.169789 CAGCATTGGAGGACGAGCG 61.170 63.158 0.00 0.00 0.00 5.03
1007 1008 3.805267 CAGCATTGGAGGACGAGC 58.195 61.111 0.00 0.00 0.00 5.03
1016 1017 0.458669 GCCAACATCTCCAGCATTGG 59.541 55.000 0.00 0.00 46.49 3.16
1017 1018 1.471119 AGCCAACATCTCCAGCATTG 58.529 50.000 0.00 0.00 0.00 2.82
1018 1019 2.240667 AGTAGCCAACATCTCCAGCATT 59.759 45.455 0.00 0.00 0.00 3.56
1019 1020 1.842562 AGTAGCCAACATCTCCAGCAT 59.157 47.619 0.00 0.00 0.00 3.79
1020 1021 1.279496 AGTAGCCAACATCTCCAGCA 58.721 50.000 0.00 0.00 0.00 4.41
1021 1022 3.556004 GGATAGTAGCCAACATCTCCAGC 60.556 52.174 0.00 0.00 0.00 4.85
1022 1023 3.007398 GGGATAGTAGCCAACATCTCCAG 59.993 52.174 6.80 0.00 0.00 3.86
1023 1024 2.972713 GGGATAGTAGCCAACATCTCCA 59.027 50.000 6.80 0.00 0.00 3.86
1024 1025 2.972713 TGGGATAGTAGCCAACATCTCC 59.027 50.000 6.80 0.00 0.00 3.71
1025 1026 4.381411 GTTGGGATAGTAGCCAACATCTC 58.619 47.826 6.80 0.00 41.21 2.75
1026 1027 3.136626 GGTTGGGATAGTAGCCAACATCT 59.863 47.826 6.80 0.00 42.70 2.90
1027 1028 3.477530 GGTTGGGATAGTAGCCAACATC 58.522 50.000 6.80 0.00 42.70 3.06
1028 1029 2.174854 GGGTTGGGATAGTAGCCAACAT 59.825 50.000 6.80 0.00 42.70 2.71
1029 1030 1.562475 GGGTTGGGATAGTAGCCAACA 59.438 52.381 6.80 0.00 42.70 3.33
1030 1031 1.562475 TGGGTTGGGATAGTAGCCAAC 59.438 52.381 6.80 0.00 40.94 3.77
1031 1032 1.974028 TGGGTTGGGATAGTAGCCAA 58.026 50.000 6.80 0.00 36.57 4.52
1032 1033 2.054799 GATGGGTTGGGATAGTAGCCA 58.945 52.381 6.80 0.00 42.93 4.75
1033 1034 2.303311 GAGATGGGTTGGGATAGTAGCC 59.697 54.545 0.00 0.00 0.00 3.93
1034 1035 2.303311 GGAGATGGGTTGGGATAGTAGC 59.697 54.545 0.00 0.00 0.00 3.58
1035 1036 2.563179 CGGAGATGGGTTGGGATAGTAG 59.437 54.545 0.00 0.00 0.00 2.57
1036 1037 2.178325 TCGGAGATGGGTTGGGATAGTA 59.822 50.000 0.00 0.00 0.00 1.82
1037 1038 1.062428 TCGGAGATGGGTTGGGATAGT 60.062 52.381 0.00 0.00 0.00 2.12
1038 1039 1.717032 TCGGAGATGGGTTGGGATAG 58.283 55.000 0.00 0.00 0.00 2.08
1039 1040 2.415983 ATCGGAGATGGGTTGGGATA 57.584 50.000 0.00 0.00 45.12 2.59
1040 1041 1.421646 GAATCGGAGATGGGTTGGGAT 59.578 52.381 0.00 0.00 45.12 3.85
1041 1042 0.837272 GAATCGGAGATGGGTTGGGA 59.163 55.000 0.00 0.00 45.12 4.37
1042 1043 0.179018 GGAATCGGAGATGGGTTGGG 60.179 60.000 0.00 0.00 45.12 4.12
1043 1044 0.839946 AGGAATCGGAGATGGGTTGG 59.160 55.000 0.00 0.00 45.12 3.77
1044 1045 2.717639 AAGGAATCGGAGATGGGTTG 57.282 50.000 0.00 0.00 45.12 3.77
1045 1046 2.438392 GGTAAGGAATCGGAGATGGGTT 59.562 50.000 0.00 0.00 45.12 4.11
1046 1047 2.047830 GGTAAGGAATCGGAGATGGGT 58.952 52.381 0.00 0.00 45.12 4.51
1047 1048 1.000955 CGGTAAGGAATCGGAGATGGG 59.999 57.143 0.00 0.00 45.12 4.00
1048 1049 1.687123 ACGGTAAGGAATCGGAGATGG 59.313 52.381 0.00 0.00 45.12 3.51
1049 1050 2.361119 TCACGGTAAGGAATCGGAGATG 59.639 50.000 0.00 0.00 45.12 2.90
1050 1051 2.623889 CTCACGGTAAGGAATCGGAGAT 59.376 50.000 0.00 0.00 45.12 2.75
1051 1052 2.022195 CTCACGGTAAGGAATCGGAGA 58.978 52.381 0.00 0.00 45.75 3.71
1052 1053 1.536284 GCTCACGGTAAGGAATCGGAG 60.536 57.143 0.00 0.00 0.00 4.63
1053 1054 0.458669 GCTCACGGTAAGGAATCGGA 59.541 55.000 0.00 0.00 0.00 4.55
1054 1055 0.174845 TGCTCACGGTAAGGAATCGG 59.825 55.000 0.00 0.00 0.00 4.18
1055 1056 1.278238 GTGCTCACGGTAAGGAATCG 58.722 55.000 0.00 0.00 0.00 3.34
1071 1072 1.777819 CTCATATGCTAGCGCGTGC 59.222 57.895 14.39 14.39 39.65 5.34
1072 1073 1.621301 GGCTCATATGCTAGCGCGTG 61.621 60.000 10.77 8.37 39.71 5.34
1073 1074 1.373497 GGCTCATATGCTAGCGCGT 60.373 57.895 10.77 1.07 39.71 6.01
1074 1075 1.349982 CTGGCTCATATGCTAGCGCG 61.350 60.000 10.77 0.00 39.71 6.86
1075 1076 2.453843 CTGGCTCATATGCTAGCGC 58.546 57.895 10.77 0.00 39.71 5.92
1078 1079 2.029560 TCGAAGCTGGCTCATATGCTAG 60.030 50.000 0.00 0.00 43.15 3.42
1079 1080 1.963515 TCGAAGCTGGCTCATATGCTA 59.036 47.619 0.00 0.00 35.09 3.49
1080 1081 0.755079 TCGAAGCTGGCTCATATGCT 59.245 50.000 0.00 0.00 37.37 3.79
1081 1082 1.586422 TTCGAAGCTGGCTCATATGC 58.414 50.000 0.00 0.00 0.00 3.14
1082 1083 3.608707 GCAATTCGAAGCTGGCTCATATG 60.609 47.826 3.35 0.00 0.00 1.78
1083 1084 2.551459 GCAATTCGAAGCTGGCTCATAT 59.449 45.455 3.35 0.00 0.00 1.78
1084 1085 1.942657 GCAATTCGAAGCTGGCTCATA 59.057 47.619 3.35 0.00 0.00 2.15
1085 1086 0.737219 GCAATTCGAAGCTGGCTCAT 59.263 50.000 3.35 0.00 0.00 2.90
1086 1087 0.321919 AGCAATTCGAAGCTGGCTCA 60.322 50.000 10.78 0.00 40.13 4.26
1087 1088 2.475666 AGCAATTCGAAGCTGGCTC 58.524 52.632 10.78 0.00 40.13 4.70
1088 1089 4.730487 AGCAATTCGAAGCTGGCT 57.270 50.000 10.78 9.86 40.13 4.75
1092 1093 1.878775 GCACCAGCAATTCGAAGCT 59.121 52.632 3.35 4.91 42.94 3.74
1093 1094 1.512734 CGCACCAGCAATTCGAAGC 60.513 57.895 3.35 2.21 42.27 3.86
1094 1095 0.516877 TTCGCACCAGCAATTCGAAG 59.483 50.000 3.35 0.00 42.27 3.79
1095 1096 0.516877 CTTCGCACCAGCAATTCGAA 59.483 50.000 0.00 0.00 42.27 3.71
1096 1097 0.320334 TCTTCGCACCAGCAATTCGA 60.320 50.000 0.00 0.00 42.27 3.71
1097 1098 0.095935 CTCTTCGCACCAGCAATTCG 59.904 55.000 0.00 0.00 42.27 3.34
1098 1099 1.442769 TCTCTTCGCACCAGCAATTC 58.557 50.000 0.00 0.00 42.27 2.17
1099 1100 1.896220 TTCTCTTCGCACCAGCAATT 58.104 45.000 0.00 0.00 42.27 2.32
1100 1101 1.808945 CTTTCTCTTCGCACCAGCAAT 59.191 47.619 0.00 0.00 42.27 3.56
1101 1102 1.229428 CTTTCTCTTCGCACCAGCAA 58.771 50.000 0.00 0.00 42.27 3.91
1102 1103 0.603707 CCTTTCTCTTCGCACCAGCA 60.604 55.000 0.00 0.00 42.27 4.41
1103 1104 1.301677 CCCTTTCTCTTCGCACCAGC 61.302 60.000 0.00 0.00 37.42 4.85
1104 1105 0.674895 CCCCTTTCTCTTCGCACCAG 60.675 60.000 0.00 0.00 0.00 4.00
1105 1106 1.374947 CCCCTTTCTCTTCGCACCA 59.625 57.895 0.00 0.00 0.00 4.17
1503 1513 2.039613 CCTTGAGAAGGGCTTCAGTCTT 59.960 50.000 0.00 0.00 45.27 3.01
1732 1742 4.592778 ACCCCAAATAGACACATTTTGCTT 59.407 37.500 0.00 0.00 0.00 3.91
1841 1855 4.037208 CCATCTTTCATATGTTGCTCCCAC 59.963 45.833 1.90 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.