>input_sequence_81809
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----------------------------------------ATGGCGCGCTCGTCCTCCAATGCTGGAGATGTTGGCTACT
ATCCCAACCCATCTCCGATTCCTTACCGTGAGCACGCGCTAGCATATGAGCCAGCTTCGAATTGCTGGTGCGAAGAGAAA
GGGGCGAGGAGAATCTCTTGGACCAACGCTAACCCTGGTCGCAGGTTTCTGAACTGCCAAAAATCTCGTGTAAGCATTTG
TTTGCATCTATCTTGTTCTTGTTTCTTGCTGAATCTATCTCTCCCTCATATAGTTGGCAAACTTTCTTTCCCCAGGACGG
AGGTTGCAAGTGGTTTGA---------TGACCCTACTACACCATTCCTTCGCCAACTTTTGGTCGATTTGCGTGACACGG
TGCACAACCTGCGGAGGGAGAACGCTCGGCTCAATTGA------------------------------------------
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--
>chr7A_1_TraesCS7A01G238800
ATTTAGACAACCAACCCACAATGTCTAAACCAAAAATGTTGGCTCATGAGCTAAGCCATTCACCAATTCGGAGCAATTGG
AGGACGTCGGCAGGGAGGCGGCCGCGCCAGCGTTGGACACGGAGACTGTTGCGCCTGGACCGCCGCCTCATCAAGGTTGA
ACCTGTTGCTATTGTTTATTTCTCGTAAATTATATAGGGTGTTGCTAGTGTTGAACCTAAAATAATTTCGCGGCTGGTTT
ATTTTCTCCTTTATATGTATTGCGGATGAAAAAAATAAATGAGAACAACTCAGAAATGACCAACATAAGATTTTTAGAAA
ATATAGATGCTAAAAGATACTATTAATATATATGAAAGAGAATATAGACATCATGTATATAGACAATCCACTGGAAAACT
TAGGTTATCTAAAAGAAAATCTTTTTACACCATTTTGTATATGTAGATATAGACTATCAAATTTAGACAGGCCACTAGAG
ACGCTCTAACCGTCAAAGTCGTTGCGCGGTCTTTGGTTGGGCTGCCCAGTAGCTAGAAACAGGAGGAACACTAACCAGGG
GTTGTCACGCCAAGATAGATTATCTCCCGCATTTTTTTTTTCCAAAGAACATTACATACCCGTCTCATACTGTGGTATCT
AGCAGTACCAGTCTCCCCCTCCCCCCTCCCACCACCAAACCACCTCACCCTCTCCCACCACCTGAAGCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCTTTGGTTGGGCTGCAGGCTTGTTGTATCCCAGATGGCGCGCTCGTCCTCCAATGCTGGAGATGTTGGCTACT
ATCCCAACCCATCTCCGATTCCTTACCGTGAGCACGCGCTAGCATATGAGCCAGCTTCGAATTGCTGGTGCGAAGAGAAA
GGGGCGAGGAGAATCTCTTGGACCAACGCTAACCCTGGTCGCAGGTTTCTGAACTGCCAAAAATCTCGTGTAAGCATTTG
TTTGCATCTATCTTGTTCTTGTTTCTTGCTGAATCTATCTCTCCCTCATATAGTTGGCAAACTTTCTTTCCCCAGGACGG
AGGTTGCAAGTGGTTTGA---------TGACCCTACTACACCATTCCTTCGCCAACTTTTGGTCGATTTGCGTGACACGG
TGCACAACCTGCGGAGGGAGAACGCTCGGCTCAATTGAGTCAACGCGGACCTTGAAATGGGGATTGAGGAACGAAGCTCC
ACTAATATTTCTTTGCGGGATGCATTGCGCAAGACGAAGGAACGAAATAAGGCTCTCGAAGAAAAGTTGGGTAAGACTGA
AGCCCTTCTCAAGGAAAAGGCAAATGGACAGCAGAAGCGGATGCTTTTTAGTGTGATTTTGTTAGTGTTCCTCCTGTTTC
TAGCTAGCAAGCTTGCAGCTTAGTATTTATCAGTTGTTGTTGCCCTGCTCGAGCTGATGTGCTGTTCGTGAACAATTTAA
TTAATATTGTGCTATCCGCTACCAATTCCTTTTGTGTAATCTGAAGAATGATGTTTATGTTAAGCAAAATGTGTCTATTT
GGG--GTGCACTGTGTTCTATATGTTTCAGTTTTCTCAAGTCTCAACCCATTTCATGTGGCAGATCAAGGATATTGTGTC
TCCAAACATGT--TGTGGGAGCAACATATGAAAGATGGAATAAAAATCATATGAATTTTTGTCATAAACGAACATCCAAT
TCATATTTTTAGTTGCACTTTGTACTCACATCAGTACAATGGCAGACTTTACACATCCCTGTAACATTGCCAAGTTTACA
TGTCTTGAATTAAACATGTTCACTACTTGGCCACAAAAAAACCTGATTGTTCCATGGAAATATGAATTTTCATATTTGTC
AACAGCACAACGAGACCTTCGCTAGCAAAAAAAAAGCACAAGCCAGGCATATCACAAATTCCGTGGGCAGTGCTATCTCC
AACATGATATTCTCATTGGAAGACGCCGAACAAACTTCCAGAGCAGTTGTTCCTCTTATGGCCTTCCAGGCCGCACTTGG
TACATTTCGGGACTTTCCTTTGCTTCTTTGTTGCGCCTCCATATGAGGGGCATTTAGATGCTTTATGACCCCTCCCTCTA
CAAATAGAGCAAAACTTTGTTCTTGGTTTACTGACATTTTCATAACCTGGCTTTGCTCTTGCATTTGTTGGCCTGCCTCG
AT
>chr7B_1
ATTTAGACAACCAACCCACAATGTCTAAATCAAAAATGTTGGCTCATGAGCTAAGCCATTCACCAATTCGGAGCAATTGA
AGGACGTCGGCAGGGAGGCGGCCGCGCCGGCGTTGGACACGAAGACTGTTGCGCCTGGACCGCCGCCTCATCAGGGTTGA
ACCTGTTGCTATTGTTTATTTCTCGTAAATTATATAGGGTGTTGCTAGTGTTGAACCTAAAATAATTTCGCGGCTGGTTT
ATTTTCTCCTTTATATGTCTTGCGGATGAAAAA---AAATGAGAACAACTCAGAAATGACCAACATAAGATTTTTAGAAA
ATATAGATGCTAAAAGATACTATTAATATATATGAAAGAGAATATAGACATCATGTATATAGACAATCCGTTGGAAAACT
TAGGTTGTCTAAAA-AAAATCTTTTTACACCATTTTGTATATGTAGATATAGACTATCAAATTTAGACAGGCCACTAGAG
ACGCTCTAACCGTCACAGTCGCTGCGCGGTCTTTGGTTGGGCTGCCCAGTAGCTAGAAACAGGAGGAACACTAACCAGGG
GTTGTCACGCCAAGATAGATTATCTCCCTCATTTTTTTTTGCCAAAGAACATTACATACCCGTCTCATACTGTGGTATCT
AGCAGTACCAGTCTCCCCCTCCCCCCTCCCACCACCAAACCACCTCACCCTCTCCCACCACCTGAAGCCGTAGCCACAAG
ATCCCCTCGCTAACCCTGGTCGCA--------------------------------------------------------
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------------------------------------------------------------------GGTGCGAAGAGAAA
GGGGCGAGGAGAATCTCTTGGACCAACGCTAACCCTGGTCGCAGGTTTCTGAACTGCCAAAAATCTCGTGTAAGCATTTG
TTTGCATCTATCTTGTTCTTGTTTCTTGCTGAATCTATCTCTCCCTCATATAGTTGGCAAACTTTCTTTCCCCAGGACGG
AGGTTGCAAGTGGTTTGAGTGGTTTGATGACCCTACTACACCATTCCTTCGCCAACTTTTGGTCGATTTGCGTGACACGG
TGCACAACCTGCGGAGGGAGAACGCTCGGCTCAATTGAATCAACGCGGACCTTGAAATGGGGATTGAGGAACGAAGCTCC
ACTAATATTTCTTTGCGGGATGCATTGCGCAAGACGAAGGAACGAAATAAGGCTCTCGAAGAAAAGTTGGGTCAGACTGA
AGCCCTTCTCAAGGAAAAGGCAAATGGACAGCAGAAGCGGATGCTTTTTAGTGTGATTTTGTTAGTGTTCCTCCTGTTTC
TAGCTAGCAAGCTTGCAGCTTAGTATTTATCAGTTGTTGTTGCCCTGCTCGAGCTGATGTGCTGTTCGTGAACAATTTAA
TTAATATTGTGCTATCCGCTACCAATTCCTTTTGTGTAATCTGAAGAATGATGTTTATGTTCAGCAAAATGTGTCTATTT
GGG--GTGCACTGTGTTCTATATGTTTCAGTTTTCTCAAGTCTCAACCCATTTCATGTGGCAGATCAAGGATATTGTGTC
TCCAAACATGT--TCTGGGAGCAACATATGAAAGATGGAATAAAAATCATATGAATTTTTGTCATAAATGAACATCCAAT
TCATATTTTTAGTTGCACTTTGTACTCACATCAGTACAATGGCAGACTTTACACATCCCTGTAACATTGCCAAGTTTACA
TGTCTTGAATTAAACATGTTCACTACTTGGCCACAAAAAAACCTGATTGTTCCATGGAAATATGAATTTTCATATTTGTC
AACAGCACAACGAGACCTTCGCTAGCAAAAAAAAAGCACAAGCCAGGCATATCACAAATTCCGTGGGCAGTGCTATCTCC
AACATGATATTCTCATTGGAAGACGCCGAACAAACTTCCAGAGCAGTTGTTCCTCTTATGGCCTTCCAGGCCGCACTTGG
TACATTTCGGGACTTTCCTTTGCTTCTTTGTTGCGCCTCCATATGAGGGGCATTTAGATGCTTTATGACCCCTCCCTCTA
CAAATAGAGCAAAACTTTGTTCTTGGTTTACTGACATTTTCATAACCTGGCTTTGCTCTTGCATTTGTTGGCCTGCCTCG
AT
>chr2B_1318
CTTGC---------------------------------------------------------------------------
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----------------------------------------------------CAACTTTTGGTCGATCTGCGCGACACGG
TGCACAACCTGCAGAGGGAGAACGCTCGGCTCAATGGCGTCAACGCACACCTTGAAATGGGGATTGAGGAACGAAGCTCC
ATTAATATTTCTTTGAGGGATGCATTGTGCAAGACGAAGGAACGAAATAAGGCTCTGGAAGAAAAGCTATGTCAGACTGA
AGCCCGTCTCAAGTAAAAGGCTAACGAACAGCAGAAGCGGATGCTTTTTAGTGTAGTGTTGTTAGTGTTCCTCCTGTTTC
TAGCTAGCAAGCTTACGGATTAGTATGGAGCATTTACTGTTGCACTGCTCAAGCTGATGTGCTATTCGTGAACAATTTAC
TTACTATTGTGCTATCCGCTACCATTTCCTTTTGTGAAATCTGAAGAATGATGTTTATGTTCAACAAAAAGTTTCTATTT
GGGGTGTGCACTGTGTTCAATATGTTTCAGTTTTCTC-------AACCCATTTCATGTGTCAGATCAAGGATATTGTGTC
TCCAGACATGTTCTCTGGGAGCAACATATGAAATATGAAAGAAAGACCATATGAAGTTTTGTCATAATTGAACATCCCAT
TAAGATTTTTGGTTGCACTTTGTACTCACATTAGTACAATGGCAAACTTTACACATCCTTGTAACATTGCCAAGTTTACA
TGTCTTGAATTAAACATGTTCACTAATTGGCCACCAAAAAACTT-ATTGTTCCGTGGAAAAAAGAATTTTCATATTTGTC
AACAGCACGTCAAGACCTTCGCTACCAAAAACAA-GCACAAGCCAGGCATGTCACAAATTCTGTGGGCAGTGCTATCTCT
AACATGATATTCTCATTGGAAGACGCCGAACAAGCTTCCAGAGCAGCTATTCCTCTTGTGGCCTTCCAGGTCGCACTTGG
TACATTTCGGGACTTTCCTTTGCTTCTTTGTTGCGCCTCCATATGAGGGGCATTTAGATGCTTTATGACCCCTCCCTCTA
CACACAGAGCAAAACTTTGATCTTGGTTTACTGACATTTTCATAACCTGGCTTTGCTCTTGCATTTGTTGGCCTGCCTCG
--
>SNPs
-----------------------------S-------------------------------------------------S
----------------------------S------------S-------------------------------S------
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------------------S--------------SSS--------------------------------------------
---------------------------------------------------------------------SS---------
------S-------S-----------------------------------------------------------------
---------------S-----S----------------------------------------------------------
----------------------------S-----------S---------------------------------------
---------------------------------------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
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--------------S-----------------------------------------------------S-----------
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--
>forward_999
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-------------------TGCAGGCTTGTTGTATCCCA-----------------------------------------
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--
>reverse_1855
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--------------GTGGGAGCAACATATGAAAGATGG------------------------------------------
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--
