Multiple sequence alignment - TraesCS7A01G233200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G233200 chr7A 100.000 2297 0 0 1 2297 205115386 205113090 0.000000e+00 4242.0
1 TraesCS7A01G233200 chr7A 98.172 383 5 2 950 1332 709985405 709985785 0.000000e+00 667.0
2 TraesCS7A01G233200 chr7D 94.742 970 47 4 1328 2295 195265685 195264718 0.000000e+00 1506.0
3 TraesCS7A01G233200 chr7D 94.582 443 18 5 471 912 195266199 195265762 0.000000e+00 680.0
4 TraesCS7A01G233200 chr7B 88.544 934 81 16 1366 2295 158917514 158916603 0.000000e+00 1109.0
5 TraesCS7A01G233200 chr7B 89.686 446 21 6 468 912 158918040 158917619 1.550000e-151 545.0
6 TraesCS7A01G233200 chr7B 83.299 485 61 10 1 475 158919229 158918755 1.630000e-116 429.0
7 TraesCS7A01G233200 chr6A 98.663 374 5 0 950 1323 521476467 521476840 0.000000e+00 664.0
8 TraesCS7A01G233200 chr1A 98.400 375 5 1 950 1323 307481982 307481608 0.000000e+00 658.0
9 TraesCS7A01G233200 chr3A 97.878 377 8 0 950 1326 466477182 466476806 0.000000e+00 652.0
10 TraesCS7A01G233200 chr2B 96.277 376 12 2 950 1324 699118572 699118946 1.170000e-172 616.0
11 TraesCS7A01G233200 chr2B 74.214 159 36 2 1560 1713 637780856 637781014 6.850000e-06 62.1
12 TraesCS7A01G233200 chr5D 96.730 367 12 0 950 1316 74472790 74473156 1.510000e-171 612.0
13 TraesCS7A01G233200 chr5D 86.575 365 49 0 950 1314 350305933 350306297 9.880000e-109 403.0
14 TraesCS7A01G233200 chr5D 86.575 365 49 0 950 1314 453121432 453121068 9.880000e-109 403.0
15 TraesCS7A01G233200 chr5D 82.353 119 19 2 1494 1611 406392366 406392249 4.040000e-18 102.0
16 TraesCS7A01G233200 chr5B 85.753 365 52 0 950 1314 662647981 662647617 9.950000e-104 387.0
17 TraesCS7A01G233200 chrUn 85.470 117 15 2 1497 1612 370577153 370577038 1.110000e-23 121.0
18 TraesCS7A01G233200 chr2D 85.470 117 15 2 1497 1612 30141802 30141917 1.110000e-23 121.0
19 TraesCS7A01G233200 chr2D 85.470 117 15 2 1497 1612 30184950 30185065 1.110000e-23 121.0
20 TraesCS7A01G233200 chr2D 84.956 113 16 1 1500 1612 30080121 30080232 1.870000e-21 113.0
21 TraesCS7A01G233200 chr2D 84.071 113 13 4 1746 1857 536387690 536387798 1.120000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G233200 chr7A 205113090 205115386 2296 True 4242.000000 4242 100.000000 1 2297 1 chr7A.!!$R1 2296
1 TraesCS7A01G233200 chr7D 195264718 195266199 1481 True 1093.000000 1506 94.662000 471 2295 2 chr7D.!!$R1 1824
2 TraesCS7A01G233200 chr7B 158916603 158919229 2626 True 694.333333 1109 87.176333 1 2295 3 chr7B.!!$R1 2294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1669 0.036858 GAGAGGGAGAAAGCACGCTT 60.037 55.0 0.0 0.0 37.98 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 2987 0.828022 TCATTACCGAGGAATGGCGT 59.172 50.0 8.44 0.0 35.42 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 3.916392 CTTATAGGCGGCGCGGAGG 62.916 68.421 26.95 9.65 0.00 4.30
128 129 5.377164 TCCTCCCTTCTCCTAGATATGAGTT 59.623 44.000 0.00 0.00 0.00 3.01
151 152 4.388499 CGTGCGGGGCAAGGTACT 62.388 66.667 0.00 0.00 41.47 2.73
162 163 2.386661 CAAGGTACTGGCTACACAGG 57.613 55.000 0.00 0.00 42.75 4.00
173 174 2.874010 CTACACAGGCGACGGCTCTG 62.874 65.000 22.39 22.17 40.84 3.35
181 182 1.749638 CGACGGCTCTGTCCTAGGT 60.750 63.158 9.08 0.00 35.40 3.08
191 192 3.476552 TCTGTCCTAGGTTTTGTGCTTG 58.523 45.455 9.08 0.00 0.00 4.01
194 195 0.603065 CCTAGGTTTTGTGCTTGGGC 59.397 55.000 0.00 0.00 39.26 5.36
197 198 2.791868 GGTTTTGTGCTTGGGCGGT 61.792 57.895 0.00 0.00 42.25 5.68
198 199 1.299850 GTTTTGTGCTTGGGCGGTC 60.300 57.895 0.00 0.00 42.25 4.79
255 262 1.757699 GAGTAGGTTGGGTCTAGCCTG 59.242 57.143 0.00 0.00 37.43 4.85
263 270 2.269241 GTCTAGCCTGGGGTGTGC 59.731 66.667 1.17 0.00 0.00 4.57
281 288 0.527817 GCCCGTGAGTAATGTCCTCG 60.528 60.000 0.00 0.00 0.00 4.63
322 329 3.164011 GGTCGTGACGTCGCTTCG 61.164 66.667 25.28 18.56 0.00 3.79
331 338 1.944676 CGTCGCTTCGCCATCCTAC 60.945 63.158 0.00 0.00 0.00 3.18
332 339 1.437986 GTCGCTTCGCCATCCTACT 59.562 57.895 0.00 0.00 0.00 2.57
336 343 1.789506 GCTTCGCCATCCTACTGATC 58.210 55.000 0.00 0.00 0.00 2.92
338 345 1.609072 CTTCGCCATCCTACTGATCGA 59.391 52.381 0.00 0.00 30.45 3.59
342 350 1.895798 GCCATCCTACTGATCGATCCA 59.104 52.381 22.31 9.75 0.00 3.41
350 358 1.492176 ACTGATCGATCCAATGGCCTT 59.508 47.619 22.31 0.00 0.00 4.35
351 359 2.705658 ACTGATCGATCCAATGGCCTTA 59.294 45.455 22.31 0.00 0.00 2.69
406 414 0.834687 AGACGGGTTTGACTAGGGCA 60.835 55.000 0.00 0.00 0.00 5.36
414 423 3.151022 GACTAGGGCAGCTCGGCT 61.151 66.667 9.03 0.00 40.77 5.52
439 448 3.691342 TCGGCAGTCTTGGGGTCG 61.691 66.667 0.00 0.00 0.00 4.79
637 1372 5.413833 ACTCATATTGTTTGTCCTCAAGCAG 59.586 40.000 0.00 0.00 43.39 4.24
655 1390 7.099764 TCAAGCAGAAGGTAGAGTCTAATTTG 58.900 38.462 0.17 0.00 0.00 2.32
854 1589 0.239879 TTAGCTTCCGCTTTTTGGCG 59.760 50.000 0.00 1.71 46.47 5.69
904 1639 1.022735 GCCATGCAACATGAGAGAGG 58.977 55.000 9.10 0.00 0.00 3.69
909 1644 2.259917 TGCAACATGAGAGAGGGAGAA 58.740 47.619 0.00 0.00 0.00 2.87
912 1647 3.269178 CAACATGAGAGAGGGAGAAAGC 58.731 50.000 0.00 0.00 0.00 3.51
913 1648 2.544721 ACATGAGAGAGGGAGAAAGCA 58.455 47.619 0.00 0.00 0.00 3.91
914 1649 2.235898 ACATGAGAGAGGGAGAAAGCAC 59.764 50.000 0.00 0.00 0.00 4.40
918 1669 0.036858 GAGAGGGAGAAAGCACGCTT 60.037 55.000 0.00 0.00 37.98 4.68
927 1678 0.109723 AAAGCACGCTTTGACCCCTA 59.890 50.000 15.89 0.00 43.72 3.53
960 1711 3.514777 CGTGAGCCTACAAGCTGAA 57.485 52.632 0.00 0.00 45.15 3.02
961 1712 1.354040 CGTGAGCCTACAAGCTGAAG 58.646 55.000 0.00 0.00 45.15 3.02
973 1724 2.772691 GCTGAAGCTCTGGCCATGC 61.773 63.158 19.53 19.53 39.73 4.06
974 1725 1.077644 CTGAAGCTCTGGCCATGCT 60.078 57.895 22.84 22.84 39.73 3.79
975 1726 1.077930 TGAAGCTCTGGCCATGCTC 60.078 57.895 26.78 20.72 39.73 4.26
976 1727 1.224039 GAAGCTCTGGCCATGCTCT 59.776 57.895 26.78 18.75 39.73 4.09
977 1728 0.467384 GAAGCTCTGGCCATGCTCTA 59.533 55.000 26.78 1.69 39.73 2.43
978 1729 1.072015 GAAGCTCTGGCCATGCTCTAT 59.928 52.381 26.78 15.70 39.73 1.98
979 1730 0.397187 AGCTCTGGCCATGCTCTATG 59.603 55.000 22.84 2.96 39.73 2.23
980 1731 1.235948 GCTCTGGCCATGCTCTATGC 61.236 60.000 19.77 7.03 43.25 3.14
981 1732 0.397187 CTCTGGCCATGCTCTATGCT 59.603 55.000 5.51 0.00 43.37 3.79
982 1733 0.108019 TCTGGCCATGCTCTATGCTG 59.892 55.000 5.51 0.00 43.37 4.41
983 1734 0.179026 CTGGCCATGCTCTATGCTGT 60.179 55.000 5.51 0.00 43.37 4.40
984 1735 0.464916 TGGCCATGCTCTATGCTGTG 60.465 55.000 0.00 0.00 43.37 3.66
985 1736 0.179037 GGCCATGCTCTATGCTGTGA 60.179 55.000 0.00 0.00 43.37 3.58
986 1737 1.671979 GCCATGCTCTATGCTGTGAA 58.328 50.000 0.00 0.00 43.37 3.18
987 1738 2.228059 GCCATGCTCTATGCTGTGAAT 58.772 47.619 0.00 0.00 43.37 2.57
988 1739 2.031069 GCCATGCTCTATGCTGTGAATG 60.031 50.000 0.00 0.00 43.37 2.67
989 1740 3.473625 CCATGCTCTATGCTGTGAATGA 58.526 45.455 0.00 0.00 43.37 2.57
990 1741 3.881089 CCATGCTCTATGCTGTGAATGAA 59.119 43.478 0.00 0.00 43.37 2.57
991 1742 4.023963 CCATGCTCTATGCTGTGAATGAAG 60.024 45.833 0.00 0.00 43.37 3.02
992 1743 2.941064 TGCTCTATGCTGTGAATGAAGC 59.059 45.455 0.00 0.00 43.37 3.86
993 1744 2.033065 GCTCTATGCTGTGAATGAAGCG 60.033 50.000 0.00 0.00 42.54 4.68
994 1745 3.193263 CTCTATGCTGTGAATGAAGCGT 58.807 45.455 0.00 0.00 42.54 5.07
995 1746 3.190079 TCTATGCTGTGAATGAAGCGTC 58.810 45.455 0.00 0.00 42.54 5.19
996 1747 1.812235 ATGCTGTGAATGAAGCGTCA 58.188 45.000 4.40 4.40 42.54 4.35
997 1748 1.592064 TGCTGTGAATGAAGCGTCAA 58.408 45.000 6.39 0.00 42.54 3.18
998 1749 1.532437 TGCTGTGAATGAAGCGTCAAG 59.468 47.619 6.39 0.00 42.54 3.02
999 1750 1.800586 GCTGTGAATGAAGCGTCAAGA 59.199 47.619 6.39 0.00 37.30 3.02
1000 1751 2.224079 GCTGTGAATGAAGCGTCAAGAA 59.776 45.455 6.39 0.00 37.30 2.52
1001 1752 3.120060 GCTGTGAATGAAGCGTCAAGAAT 60.120 43.478 6.39 0.00 37.30 2.40
1002 1753 4.400845 CTGTGAATGAAGCGTCAAGAATG 58.599 43.478 6.39 0.00 37.30 2.67
1003 1754 3.189080 TGTGAATGAAGCGTCAAGAATGG 59.811 43.478 6.39 0.00 37.30 3.16
1004 1755 2.749076 TGAATGAAGCGTCAAGAATGGG 59.251 45.455 6.39 0.00 37.30 4.00
1005 1756 1.755179 ATGAAGCGTCAAGAATGGGG 58.245 50.000 6.39 0.00 37.30 4.96
1006 1757 0.400213 TGAAGCGTCAAGAATGGGGT 59.600 50.000 0.00 0.00 0.00 4.95
1007 1758 0.804989 GAAGCGTCAAGAATGGGGTG 59.195 55.000 0.00 0.00 0.00 4.61
1008 1759 1.244019 AAGCGTCAAGAATGGGGTGC 61.244 55.000 0.00 0.00 0.00 5.01
1009 1760 2.700773 GCGTCAAGAATGGGGTGCC 61.701 63.158 0.00 0.00 0.00 5.01
1010 1761 1.303236 CGTCAAGAATGGGGTGCCA 60.303 57.895 0.00 0.00 0.00 4.92
1011 1762 0.893270 CGTCAAGAATGGGGTGCCAA 60.893 55.000 0.00 0.00 0.00 4.52
1012 1763 1.337118 GTCAAGAATGGGGTGCCAAA 58.663 50.000 0.00 0.00 0.00 3.28
1013 1764 1.691434 GTCAAGAATGGGGTGCCAAAA 59.309 47.619 0.00 0.00 0.00 2.44
1014 1765 2.103941 GTCAAGAATGGGGTGCCAAAAA 59.896 45.455 0.00 0.00 0.00 1.94
1015 1766 2.368221 TCAAGAATGGGGTGCCAAAAAG 59.632 45.455 0.00 0.00 0.00 2.27
1016 1767 2.101640 AGAATGGGGTGCCAAAAAGT 57.898 45.000 0.00 0.00 0.00 2.66
1017 1768 1.970640 AGAATGGGGTGCCAAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
1018 1769 1.691434 GAATGGGGTGCCAAAAAGTCA 59.309 47.619 0.00 0.00 0.00 3.41
1019 1770 2.028561 ATGGGGTGCCAAAAAGTCAT 57.971 45.000 0.00 0.00 0.00 3.06
1020 1771 1.337118 TGGGGTGCCAAAAAGTCATC 58.663 50.000 0.00 0.00 0.00 2.92
1021 1772 1.133199 TGGGGTGCCAAAAAGTCATCT 60.133 47.619 0.00 0.00 0.00 2.90
1022 1773 1.970640 GGGGTGCCAAAAAGTCATCTT 59.029 47.619 0.00 0.00 35.14 2.40
1023 1774 3.161866 GGGGTGCCAAAAAGTCATCTTA 58.838 45.455 0.00 0.00 33.09 2.10
1024 1775 3.193479 GGGGTGCCAAAAAGTCATCTTAG 59.807 47.826 0.00 0.00 33.09 2.18
1025 1776 4.079253 GGGTGCCAAAAAGTCATCTTAGA 58.921 43.478 0.00 0.00 33.09 2.10
1026 1777 4.156739 GGGTGCCAAAAAGTCATCTTAGAG 59.843 45.833 0.00 0.00 33.09 2.43
1027 1778 5.003804 GGTGCCAAAAAGTCATCTTAGAGA 58.996 41.667 0.00 0.00 33.09 3.10
1028 1779 5.106515 GGTGCCAAAAAGTCATCTTAGAGAC 60.107 44.000 4.45 4.45 33.09 3.36
1029 1780 4.690748 TGCCAAAAAGTCATCTTAGAGACG 59.309 41.667 6.31 0.00 39.67 4.18
1030 1781 4.093556 GCCAAAAAGTCATCTTAGAGACGG 59.906 45.833 6.31 3.77 39.67 4.79
1031 1782 5.479306 CCAAAAAGTCATCTTAGAGACGGA 58.521 41.667 6.31 0.00 39.67 4.69
1032 1783 6.109359 CCAAAAAGTCATCTTAGAGACGGAT 58.891 40.000 6.31 0.00 39.67 4.18
1033 1784 6.036517 CCAAAAAGTCATCTTAGAGACGGATG 59.963 42.308 0.00 0.00 39.67 3.51
1034 1785 4.314740 AAGTCATCTTAGAGACGGATGC 57.685 45.455 0.00 0.00 39.67 3.91
1035 1786 3.291584 AGTCATCTTAGAGACGGATGCA 58.708 45.455 0.00 0.00 39.67 3.96
1036 1787 3.317711 AGTCATCTTAGAGACGGATGCAG 59.682 47.826 0.00 0.00 39.67 4.41
1037 1788 3.067461 GTCATCTTAGAGACGGATGCAGT 59.933 47.826 0.00 0.00 37.38 4.40
1038 1789 3.701542 TCATCTTAGAGACGGATGCAGTT 59.298 43.478 0.00 0.00 37.38 3.16
1039 1790 3.510388 TCTTAGAGACGGATGCAGTTG 57.490 47.619 0.00 0.00 0.00 3.16
1040 1791 1.929836 CTTAGAGACGGATGCAGTTGC 59.070 52.381 0.00 0.00 42.50 4.17
1041 1792 1.186200 TAGAGACGGATGCAGTTGCT 58.814 50.000 5.62 0.00 42.66 3.91
1042 1793 0.108424 AGAGACGGATGCAGTTGCTC 60.108 55.000 5.62 0.00 42.66 4.26
1043 1794 0.108424 GAGACGGATGCAGTTGCTCT 60.108 55.000 5.62 0.00 42.66 4.09
1044 1795 1.135139 GAGACGGATGCAGTTGCTCTA 59.865 52.381 5.62 0.00 42.66 2.43
1045 1796 1.550524 AGACGGATGCAGTTGCTCTAA 59.449 47.619 5.62 0.00 42.66 2.10
1046 1797 2.028112 AGACGGATGCAGTTGCTCTAAA 60.028 45.455 5.62 0.00 42.66 1.85
1047 1798 2.349886 GACGGATGCAGTTGCTCTAAAG 59.650 50.000 5.62 0.00 42.66 1.85
1063 1814 5.673337 TCTAAAGCAGGCAATTATAAGCG 57.327 39.130 0.00 0.00 0.00 4.68
1064 1815 5.364778 TCTAAAGCAGGCAATTATAAGCGA 58.635 37.500 0.00 0.00 0.00 4.93
1065 1816 3.971032 AAGCAGGCAATTATAAGCGAC 57.029 42.857 0.00 0.00 0.00 5.19
1066 1817 2.222027 AGCAGGCAATTATAAGCGACC 58.778 47.619 0.00 0.00 0.00 4.79
1067 1818 2.158755 AGCAGGCAATTATAAGCGACCT 60.159 45.455 0.00 0.00 0.00 3.85
1068 1819 2.031682 GCAGGCAATTATAAGCGACCTG 60.032 50.000 16.56 16.56 44.80 4.00
1069 1820 3.206150 CAGGCAATTATAAGCGACCTGT 58.794 45.455 14.18 0.00 38.69 4.00
1070 1821 4.377021 CAGGCAATTATAAGCGACCTGTA 58.623 43.478 14.18 0.00 38.69 2.74
1071 1822 4.211374 CAGGCAATTATAAGCGACCTGTAC 59.789 45.833 14.18 0.00 38.69 2.90
1072 1823 3.183775 GGCAATTATAAGCGACCTGTACG 59.816 47.826 0.00 0.00 0.00 3.67
1073 1824 4.046462 GCAATTATAAGCGACCTGTACGA 58.954 43.478 0.00 0.00 0.00 3.43
1074 1825 4.085210 GCAATTATAAGCGACCTGTACGAC 60.085 45.833 0.00 0.00 0.00 4.34
1075 1826 5.279384 CAATTATAAGCGACCTGTACGACT 58.721 41.667 0.00 0.00 0.00 4.18
1076 1827 6.432936 CAATTATAAGCGACCTGTACGACTA 58.567 40.000 0.00 0.00 0.00 2.59
1077 1828 3.959573 ATAAGCGACCTGTACGACTAC 57.040 47.619 0.00 0.00 0.00 2.73
1078 1829 1.818642 AAGCGACCTGTACGACTACT 58.181 50.000 0.00 0.00 0.00 2.57
1079 1830 1.367659 AGCGACCTGTACGACTACTC 58.632 55.000 0.00 0.00 0.00 2.59
1080 1831 1.081892 GCGACCTGTACGACTACTCA 58.918 55.000 0.00 0.00 0.00 3.41
1081 1832 1.466167 GCGACCTGTACGACTACTCAA 59.534 52.381 0.00 0.00 0.00 3.02
1082 1833 2.475852 GCGACCTGTACGACTACTCAAG 60.476 54.545 0.00 0.00 0.00 3.02
1083 1834 2.475852 CGACCTGTACGACTACTCAAGC 60.476 54.545 0.00 0.00 0.00 4.01
1084 1835 1.817447 ACCTGTACGACTACTCAAGCC 59.183 52.381 0.00 0.00 0.00 4.35
1085 1836 2.093106 CCTGTACGACTACTCAAGCCT 58.907 52.381 0.00 0.00 0.00 4.58
1086 1837 3.276857 CCTGTACGACTACTCAAGCCTA 58.723 50.000 0.00 0.00 0.00 3.93
1087 1838 3.312973 CCTGTACGACTACTCAAGCCTAG 59.687 52.174 0.00 0.00 0.00 3.02
1088 1839 3.276857 TGTACGACTACTCAAGCCTAGG 58.723 50.000 3.67 3.67 0.00 3.02
1089 1840 1.104630 ACGACTACTCAAGCCTAGGC 58.895 55.000 27.19 27.19 42.33 3.93
1090 1841 2.615771 ACGACTACTCAAGCCTAGGCG 61.616 57.143 27.83 16.04 45.44 5.52
1099 1850 4.609995 GCCTAGGCGTGCTGTTTA 57.390 55.556 20.16 0.00 0.00 2.01
1100 1851 2.849081 GCCTAGGCGTGCTGTTTAA 58.151 52.632 20.16 0.00 0.00 1.52
1101 1852 1.161843 GCCTAGGCGTGCTGTTTAAA 58.838 50.000 20.16 0.00 0.00 1.52
1102 1853 1.130561 GCCTAGGCGTGCTGTTTAAAG 59.869 52.381 20.16 0.00 0.00 1.85
1103 1854 2.695359 CCTAGGCGTGCTGTTTAAAGA 58.305 47.619 0.00 0.00 0.00 2.52
1104 1855 2.673368 CCTAGGCGTGCTGTTTAAAGAG 59.327 50.000 7.97 7.97 0.00 2.85
1105 1856 2.543777 AGGCGTGCTGTTTAAAGAGA 57.456 45.000 16.08 0.00 0.00 3.10
1106 1857 3.059352 AGGCGTGCTGTTTAAAGAGAT 57.941 42.857 16.08 0.00 0.00 2.75
1107 1858 4.202245 AGGCGTGCTGTTTAAAGAGATA 57.798 40.909 16.08 1.53 0.00 1.98
1108 1859 4.575885 AGGCGTGCTGTTTAAAGAGATAA 58.424 39.130 16.08 0.00 0.00 1.75
1109 1860 4.631813 AGGCGTGCTGTTTAAAGAGATAAG 59.368 41.667 16.08 7.39 0.00 1.73
1110 1861 4.630069 GGCGTGCTGTTTAAAGAGATAAGA 59.370 41.667 16.08 0.00 0.00 2.10
1111 1862 5.220491 GGCGTGCTGTTTAAAGAGATAAGAG 60.220 44.000 16.08 2.39 0.00 2.85
1112 1863 5.725316 GCGTGCTGTTTAAAGAGATAAGAGC 60.725 44.000 16.08 7.88 0.00 4.09
1113 1864 5.348724 CGTGCTGTTTAAAGAGATAAGAGCA 59.651 40.000 16.08 2.85 33.33 4.26
1114 1865 6.454848 CGTGCTGTTTAAAGAGATAAGAGCAG 60.455 42.308 16.08 4.01 34.97 4.24
1115 1866 6.370166 GTGCTGTTTAAAGAGATAAGAGCAGT 59.630 38.462 16.08 0.00 34.97 4.40
1116 1867 6.369890 TGCTGTTTAAAGAGATAAGAGCAGTG 59.630 38.462 16.08 0.00 31.99 3.66
1117 1868 6.370166 GCTGTTTAAAGAGATAAGAGCAGTGT 59.630 38.462 16.08 0.00 0.00 3.55
1118 1869 7.095017 GCTGTTTAAAGAGATAAGAGCAGTGTT 60.095 37.037 16.08 0.00 0.00 3.32
1119 1870 8.087982 TGTTTAAAGAGATAAGAGCAGTGTTG 57.912 34.615 0.00 0.00 0.00 3.33
1133 1884 3.708890 CAGTGTTGCAATCAGCTTTTCA 58.291 40.909 0.59 0.00 45.94 2.69
1134 1885 4.114073 CAGTGTTGCAATCAGCTTTTCAA 58.886 39.130 0.59 0.00 45.94 2.69
1135 1886 4.748102 CAGTGTTGCAATCAGCTTTTCAAT 59.252 37.500 0.59 0.00 45.94 2.57
1136 1887 4.986659 AGTGTTGCAATCAGCTTTTCAATC 59.013 37.500 0.59 0.00 45.94 2.67
1137 1888 4.986659 GTGTTGCAATCAGCTTTTCAATCT 59.013 37.500 0.59 0.00 45.94 2.40
1138 1889 5.464389 GTGTTGCAATCAGCTTTTCAATCTT 59.536 36.000 0.59 0.00 45.94 2.40
1139 1890 5.464057 TGTTGCAATCAGCTTTTCAATCTTG 59.536 36.000 0.59 0.00 45.94 3.02
1140 1891 5.204409 TGCAATCAGCTTTTCAATCTTGT 57.796 34.783 0.00 0.00 45.94 3.16
1141 1892 6.330004 TGCAATCAGCTTTTCAATCTTGTA 57.670 33.333 0.00 0.00 45.94 2.41
1142 1893 6.747125 TGCAATCAGCTTTTCAATCTTGTAA 58.253 32.000 0.00 0.00 45.94 2.41
1143 1894 7.208777 TGCAATCAGCTTTTCAATCTTGTAAA 58.791 30.769 0.00 0.00 45.94 2.01
1144 1895 7.383029 TGCAATCAGCTTTTCAATCTTGTAAAG 59.617 33.333 14.22 14.22 45.25 1.85
1145 1896 7.383300 GCAATCAGCTTTTCAATCTTGTAAAGT 59.617 33.333 17.66 7.24 43.29 2.66
1146 1897 9.897744 CAATCAGCTTTTCAATCTTGTAAAGTA 57.102 29.630 17.66 8.79 46.34 2.24
1148 1899 8.902540 TCAGCTTTTCAATCTTGTAAAGTAGA 57.097 30.769 17.66 14.08 46.34 2.59
1149 1900 9.337396 TCAGCTTTTCAATCTTGTAAAGTAGAA 57.663 29.630 17.66 5.07 46.34 2.10
1150 1901 9.950680 CAGCTTTTCAATCTTGTAAAGTAGAAA 57.049 29.630 17.66 0.00 46.34 2.52
1151 1902 9.952188 AGCTTTTCAATCTTGTAAAGTAGAAAC 57.048 29.630 17.66 5.85 46.34 2.78
1152 1903 9.181805 GCTTTTCAATCTTGTAAAGTAGAAACC 57.818 33.333 17.66 2.78 46.34 3.27
1155 1906 7.435068 TCAATCTTGTAAAGTAGAAACCTGC 57.565 36.000 0.00 0.00 46.34 4.85
1156 1907 6.430000 TCAATCTTGTAAAGTAGAAACCTGCC 59.570 38.462 0.00 0.00 46.34 4.85
1157 1908 4.648651 TCTTGTAAAGTAGAAACCTGCCC 58.351 43.478 0.00 0.00 46.34 5.36
1158 1909 4.103469 TCTTGTAAAGTAGAAACCTGCCCA 59.897 41.667 0.00 0.00 46.34 5.36
1159 1910 3.746940 TGTAAAGTAGAAACCTGCCCAC 58.253 45.455 0.00 0.00 0.00 4.61
1160 1911 1.892209 AAAGTAGAAACCTGCCCACG 58.108 50.000 0.00 0.00 0.00 4.94
1161 1912 0.036306 AAGTAGAAACCTGCCCACGG 59.964 55.000 0.00 0.00 0.00 4.94
1175 1926 3.915437 CCCACGGGCATGTAATATTTC 57.085 47.619 0.00 0.00 0.00 2.17
1176 1927 3.486383 CCCACGGGCATGTAATATTTCT 58.514 45.455 0.00 0.00 0.00 2.52
1177 1928 3.253188 CCCACGGGCATGTAATATTTCTG 59.747 47.826 0.00 0.00 0.00 3.02
1178 1929 3.304659 CCACGGGCATGTAATATTTCTGC 60.305 47.826 0.00 0.83 0.00 4.26
1179 1930 3.314913 CACGGGCATGTAATATTTCTGCA 59.685 43.478 14.61 0.00 34.56 4.41
1180 1931 3.315191 ACGGGCATGTAATATTTCTGCAC 59.685 43.478 14.61 11.52 34.56 4.57
1181 1932 3.314913 CGGGCATGTAATATTTCTGCACA 59.685 43.478 15.05 5.39 36.02 4.57
1182 1933 4.610945 GGGCATGTAATATTTCTGCACAC 58.389 43.478 14.61 0.00 36.28 3.82
1183 1934 4.339247 GGGCATGTAATATTTCTGCACACT 59.661 41.667 14.61 0.00 36.28 3.55
1184 1935 5.276270 GGCATGTAATATTTCTGCACACTG 58.724 41.667 14.61 6.31 34.56 3.66
1185 1936 5.163622 GGCATGTAATATTTCTGCACACTGT 60.164 40.000 14.61 0.00 34.56 3.55
1186 1937 6.324819 GCATGTAATATTTCTGCACACTGTT 58.675 36.000 0.00 0.00 33.13 3.16
1187 1938 6.808212 GCATGTAATATTTCTGCACACTGTTT 59.192 34.615 0.00 0.00 33.13 2.83
1188 1939 7.967854 GCATGTAATATTTCTGCACACTGTTTA 59.032 33.333 0.00 0.00 33.13 2.01
1189 1940 9.494479 CATGTAATATTTCTGCACACTGTTTAG 57.506 33.333 0.00 0.00 0.00 1.85
1190 1941 7.526608 TGTAATATTTCTGCACACTGTTTAGC 58.473 34.615 0.00 0.00 0.00 3.09
1191 1942 6.824305 AATATTTCTGCACACTGTTTAGCT 57.176 33.333 0.00 0.00 0.00 3.32
1192 1943 3.969117 TTTCTGCACACTGTTTAGCTG 57.031 42.857 0.00 0.00 0.00 4.24
1193 1944 1.229428 TCTGCACACTGTTTAGCTGC 58.771 50.000 0.00 0.00 33.54 5.25
1194 1945 1.202687 TCTGCACACTGTTTAGCTGCT 60.203 47.619 7.57 7.57 33.90 4.24
1195 1946 1.196354 CTGCACACTGTTTAGCTGCTC 59.804 52.381 4.91 0.00 33.90 4.26
1196 1947 1.229428 GCACACTGTTTAGCTGCTCA 58.771 50.000 4.91 0.00 31.39 4.26
1197 1948 1.808945 GCACACTGTTTAGCTGCTCAT 59.191 47.619 4.91 0.00 31.39 2.90
1198 1949 2.413765 GCACACTGTTTAGCTGCTCATG 60.414 50.000 4.91 2.16 31.39 3.07
1199 1950 2.161012 CACACTGTTTAGCTGCTCATGG 59.839 50.000 4.91 0.00 0.00 3.66
1200 1951 2.224621 ACACTGTTTAGCTGCTCATGGT 60.225 45.455 4.91 0.00 0.00 3.55
1201 1952 2.161012 CACTGTTTAGCTGCTCATGGTG 59.839 50.000 4.91 6.85 0.00 4.17
1202 1953 2.224621 ACTGTTTAGCTGCTCATGGTGT 60.225 45.455 4.91 0.00 0.00 4.16
1203 1954 3.007940 ACTGTTTAGCTGCTCATGGTGTA 59.992 43.478 4.91 0.00 0.00 2.90
1204 1955 4.194640 CTGTTTAGCTGCTCATGGTGTAT 58.805 43.478 4.91 0.00 0.00 2.29
1205 1956 3.940852 TGTTTAGCTGCTCATGGTGTATG 59.059 43.478 4.91 0.00 38.17 2.39
1206 1957 3.912496 TTAGCTGCTCATGGTGTATGT 57.088 42.857 4.91 0.00 38.01 2.29
1207 1958 5.116180 GTTTAGCTGCTCATGGTGTATGTA 58.884 41.667 4.91 0.00 38.01 2.29
1208 1959 5.551305 TTAGCTGCTCATGGTGTATGTAT 57.449 39.130 4.91 0.00 38.01 2.29
1209 1960 3.736720 AGCTGCTCATGGTGTATGTATG 58.263 45.455 0.00 0.00 38.01 2.39
1210 1961 2.810274 GCTGCTCATGGTGTATGTATGG 59.190 50.000 0.00 0.00 38.01 2.74
1211 1962 3.494924 GCTGCTCATGGTGTATGTATGGA 60.495 47.826 0.00 0.00 38.01 3.41
1212 1963 4.313282 CTGCTCATGGTGTATGTATGGAG 58.687 47.826 0.00 0.00 38.01 3.86
1213 1964 3.070018 GCTCATGGTGTATGTATGGAGC 58.930 50.000 0.00 0.00 38.01 4.70
1214 1965 3.320626 CTCATGGTGTATGTATGGAGCG 58.679 50.000 0.00 0.00 38.01 5.03
1215 1966 2.037121 TCATGGTGTATGTATGGAGCGG 59.963 50.000 0.00 0.00 38.01 5.52
1216 1967 1.783071 TGGTGTATGTATGGAGCGGA 58.217 50.000 0.00 0.00 0.00 5.54
1217 1968 2.112190 TGGTGTATGTATGGAGCGGAA 58.888 47.619 0.00 0.00 0.00 4.30
1218 1969 2.102420 TGGTGTATGTATGGAGCGGAAG 59.898 50.000 0.00 0.00 0.00 3.46
1219 1970 2.364324 GGTGTATGTATGGAGCGGAAGA 59.636 50.000 0.00 0.00 0.00 2.87
1220 1971 3.553096 GGTGTATGTATGGAGCGGAAGAG 60.553 52.174 0.00 0.00 0.00 2.85
1221 1972 2.035961 TGTATGTATGGAGCGGAAGAGC 59.964 50.000 0.00 0.00 37.41 4.09
1233 1984 2.805099 GCGGAAGAGCTATCAGATTTGG 59.195 50.000 3.77 0.00 0.00 3.28
1234 1985 2.805099 CGGAAGAGCTATCAGATTTGGC 59.195 50.000 0.00 0.00 0.00 4.52
1235 1986 3.494048 CGGAAGAGCTATCAGATTTGGCT 60.494 47.826 5.31 5.31 35.86 4.75
1236 1987 4.459330 GGAAGAGCTATCAGATTTGGCTT 58.541 43.478 0.00 0.00 33.13 4.35
1237 1988 4.275443 GGAAGAGCTATCAGATTTGGCTTG 59.725 45.833 0.00 0.00 33.13 4.01
1238 1989 4.767578 AGAGCTATCAGATTTGGCTTGA 57.232 40.909 0.00 0.00 33.13 3.02
1239 1990 5.307544 AGAGCTATCAGATTTGGCTTGAT 57.692 39.130 0.00 0.00 33.13 2.57
1240 1991 5.307204 AGAGCTATCAGATTTGGCTTGATC 58.693 41.667 0.00 0.00 33.13 2.92
1241 1992 4.396522 AGCTATCAGATTTGGCTTGATCC 58.603 43.478 0.00 0.00 0.00 3.36
1242 1993 3.188048 GCTATCAGATTTGGCTTGATCCG 59.812 47.826 0.00 0.00 0.00 4.18
1243 1994 2.787473 TCAGATTTGGCTTGATCCGT 57.213 45.000 0.00 0.00 0.00 4.69
1244 1995 3.071874 TCAGATTTGGCTTGATCCGTT 57.928 42.857 0.00 0.00 0.00 4.44
1245 1996 3.420893 TCAGATTTGGCTTGATCCGTTT 58.579 40.909 0.00 0.00 0.00 3.60
1246 1997 3.440173 TCAGATTTGGCTTGATCCGTTTC 59.560 43.478 0.00 0.00 0.00 2.78
1247 1998 2.755103 AGATTTGGCTTGATCCGTTTCC 59.245 45.455 0.00 0.00 0.00 3.13
1248 1999 0.878416 TTTGGCTTGATCCGTTTCCG 59.122 50.000 0.00 0.00 0.00 4.30
1249 2000 0.035598 TTGGCTTGATCCGTTTCCGA 59.964 50.000 0.00 0.00 35.63 4.55
1250 2001 0.391130 TGGCTTGATCCGTTTCCGAG 60.391 55.000 0.00 0.00 35.63 4.63
1251 2002 1.706287 GGCTTGATCCGTTTCCGAGC 61.706 60.000 0.00 0.00 35.63 5.03
1252 2003 1.706287 GCTTGATCCGTTTCCGAGCC 61.706 60.000 0.00 0.00 35.63 4.70
1253 2004 0.391130 CTTGATCCGTTTCCGAGCCA 60.391 55.000 0.00 0.00 35.63 4.75
1254 2005 0.251916 TTGATCCGTTTCCGAGCCAT 59.748 50.000 0.00 0.00 35.63 4.40
1255 2006 0.461870 TGATCCGTTTCCGAGCCATG 60.462 55.000 0.00 0.00 35.63 3.66
1256 2007 0.462047 GATCCGTTTCCGAGCCATGT 60.462 55.000 0.00 0.00 35.63 3.21
1257 2008 0.828022 ATCCGTTTCCGAGCCATGTA 59.172 50.000 0.00 0.00 35.63 2.29
1258 2009 0.609151 TCCGTTTCCGAGCCATGTAA 59.391 50.000 0.00 0.00 35.63 2.41
1259 2010 1.002201 TCCGTTTCCGAGCCATGTAAA 59.998 47.619 0.00 0.00 35.63 2.01
1260 2011 1.807742 CCGTTTCCGAGCCATGTAAAA 59.192 47.619 0.00 0.00 35.63 1.52
1261 2012 2.226912 CCGTTTCCGAGCCATGTAAAAA 59.773 45.455 0.00 0.00 35.63 1.94
1277 2028 2.399856 AAAAACTTGTCGCTGGCGA 58.600 47.368 13.78 13.78 46.87 5.54
1291 2042 3.123620 GCGAGTCCAGCTTGCCTG 61.124 66.667 0.00 0.00 46.53 4.85
1299 2050 2.496942 CAGCTTGCCTGGGTAATGG 58.503 57.895 0.00 0.00 37.93 3.16
1300 2051 0.034186 CAGCTTGCCTGGGTAATGGA 60.034 55.000 0.00 0.00 37.93 3.41
1301 2052 0.704076 AGCTTGCCTGGGTAATGGAA 59.296 50.000 0.00 0.00 0.00 3.53
1302 2053 1.288932 AGCTTGCCTGGGTAATGGAAT 59.711 47.619 0.00 0.00 0.00 3.01
1303 2054 2.513738 AGCTTGCCTGGGTAATGGAATA 59.486 45.455 0.00 0.00 0.00 1.75
1304 2055 2.623416 GCTTGCCTGGGTAATGGAATAC 59.377 50.000 0.00 0.00 0.00 1.89
1305 2056 3.897239 CTTGCCTGGGTAATGGAATACA 58.103 45.455 0.00 0.00 0.00 2.29
1306 2057 4.473444 CTTGCCTGGGTAATGGAATACAT 58.527 43.478 0.00 0.00 43.07 2.29
1387 2138 0.602905 GTCGTTCTTCACTGGTGGGG 60.603 60.000 0.70 0.00 0.00 4.96
1478 2230 8.899771 GGCTAGGTTTTAATTATGTTCTGCTAA 58.100 33.333 0.00 0.00 0.00 3.09
1528 2280 5.786264 AAAAGAAGAGTGGAGTAGTTCGA 57.214 39.130 0.00 0.00 0.00 3.71
1564 2316 2.436417 GCCTTACACATTTCAGCCTCA 58.564 47.619 0.00 0.00 0.00 3.86
1581 2333 2.636830 CTCAATGTCATCTGGTGGTCC 58.363 52.381 0.00 0.00 0.00 4.46
1582 2334 1.984424 TCAATGTCATCTGGTGGTCCA 59.016 47.619 0.00 0.00 42.05 4.02
1626 2378 6.474140 TCCTATTCTACGCTTAAACCATGA 57.526 37.500 0.00 0.00 0.00 3.07
1643 2395 5.339990 ACCATGAAATTGCAGTTATAACGC 58.660 37.500 19.06 19.06 0.00 4.84
1651 2403 5.871465 TTGCAGTTATAACGCTCAAATGA 57.129 34.783 23.27 7.62 32.44 2.57
1680 2432 1.338973 ACAAACCTCTCGTACGCTCAA 59.661 47.619 11.24 0.00 0.00 3.02
2199 2954 5.331876 GCTCCAAAGTCTAGAGAGCTTAA 57.668 43.478 18.78 0.00 45.11 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 3.986006 CCTCCGCGCCGCCTATAA 61.986 66.667 2.28 0.00 0.00 0.98
89 90 0.973496 GAGGAGTCCACTGTCCCTCC 60.973 65.000 12.86 8.25 43.14 4.30
93 94 0.545548 AAGGGAGGAGTCCACTGTCC 60.546 60.000 12.86 9.32 46.07 4.02
95 96 0.489567 AGAAGGGAGGAGTCCACTGT 59.510 55.000 12.86 0.00 46.07 3.55
97 98 0.041982 GGAGAAGGGAGGAGTCCACT 59.958 60.000 12.86 3.45 46.07 4.00
98 99 0.041982 AGGAGAAGGGAGGAGTCCAC 59.958 60.000 12.86 4.72 46.07 4.02
151 152 4.063967 CCGTCGCCTGTGTAGCCA 62.064 66.667 0.00 0.00 0.00 4.75
154 155 2.202623 GAGCCGTCGCCTGTGTAG 60.203 66.667 0.00 0.00 34.57 2.74
155 156 2.675423 AGAGCCGTCGCCTGTGTA 60.675 61.111 0.00 0.00 34.57 2.90
156 157 4.363990 CAGAGCCGTCGCCTGTGT 62.364 66.667 0.00 0.00 34.57 3.72
157 158 4.363990 ACAGAGCCGTCGCCTGTG 62.364 66.667 10.83 5.72 41.81 3.66
158 159 4.057428 GACAGAGCCGTCGCCTGT 62.057 66.667 11.26 11.26 44.29 4.00
159 160 4.803426 GGACAGAGCCGTCGCCTG 62.803 72.222 6.14 6.14 38.51 4.85
160 161 3.640257 TAGGACAGAGCCGTCGCCT 62.640 63.158 0.00 0.00 36.73 5.52
162 163 2.409651 CTAGGACAGAGCCGTCGC 59.590 66.667 0.00 0.00 36.73 5.19
163 164 1.313812 AACCTAGGACAGAGCCGTCG 61.314 60.000 17.98 0.00 36.73 5.12
164 165 0.896226 AAACCTAGGACAGAGCCGTC 59.104 55.000 17.98 0.00 35.03 4.79
165 166 1.002087 CAAAACCTAGGACAGAGCCGT 59.998 52.381 17.98 0.00 0.00 5.68
166 167 1.002087 ACAAAACCTAGGACAGAGCCG 59.998 52.381 17.98 0.00 0.00 5.52
173 174 1.886542 CCCAAGCACAAAACCTAGGAC 59.113 52.381 17.98 0.00 0.00 3.85
177 178 1.175983 CCGCCCAAGCACAAAACCTA 61.176 55.000 0.00 0.00 39.83 3.08
181 182 1.454847 AGACCGCCCAAGCACAAAA 60.455 52.632 0.00 0.00 39.83 2.44
194 195 4.087892 CAGGCCAGACCCAGACCG 62.088 72.222 5.01 0.00 40.58 4.79
197 198 2.284921 CCTCAGGCCAGACCCAGA 60.285 66.667 5.01 0.00 40.58 3.86
198 199 4.106925 GCCTCAGGCCAGACCCAG 62.107 72.222 3.37 0.00 44.06 4.45
210 212 0.532573 GACAACTCAGATCCGCCTCA 59.467 55.000 0.00 0.00 0.00 3.86
221 223 1.254026 CTACTCGGGGTGACAACTCA 58.746 55.000 0.00 0.00 0.00 3.41
263 270 0.527817 GCGAGGACATTACTCACGGG 60.528 60.000 0.00 0.00 34.66 5.28
293 300 3.920196 ACGACCACCACCACCGAC 61.920 66.667 0.00 0.00 0.00 4.79
322 329 1.895798 TGGATCGATCAGTAGGATGGC 59.104 52.381 25.93 5.95 36.00 4.40
331 338 2.267174 AAGGCCATTGGATCGATCAG 57.733 50.000 25.93 12.48 0.00 2.90
332 339 2.972021 TCTAAGGCCATTGGATCGATCA 59.028 45.455 25.93 7.83 0.00 2.92
336 343 2.874701 CAAGTCTAAGGCCATTGGATCG 59.125 50.000 5.01 0.00 30.30 3.69
338 345 2.687914 GCCAAGTCTAAGGCCATTGGAT 60.688 50.000 18.32 0.00 45.18 3.41
350 358 1.469251 GCTCGAACGATGCCAAGTCTA 60.469 52.381 0.00 0.00 0.00 2.59
351 359 0.737715 GCTCGAACGATGCCAAGTCT 60.738 55.000 0.00 0.00 0.00 3.24
360 368 1.671845 GACTAGGTGAGCTCGAACGAT 59.328 52.381 9.64 0.00 0.00 3.73
362 370 0.247735 CGACTAGGTGAGCTCGAACG 60.248 60.000 9.64 4.28 33.29 3.95
390 398 1.745489 GCTGCCCTAGTCAAACCCG 60.745 63.158 0.00 0.00 0.00 5.28
418 427 3.691342 CCCAAGACTGCCGACGGA 61.691 66.667 20.50 1.60 0.00 4.69
425 434 3.050275 GCACGACCCCAAGACTGC 61.050 66.667 0.00 0.00 0.00 4.40
454 464 0.182775 ATTAATCCCGGTGGACCAGC 59.817 55.000 13.93 13.93 45.58 4.85
537 1270 9.190317 ACTAAAGACAAAGAGAAAGTGGAAAAT 57.810 29.630 0.00 0.00 0.00 1.82
541 1274 6.542370 CCAACTAAAGACAAAGAGAAAGTGGA 59.458 38.462 0.00 0.00 0.00 4.02
542 1275 6.238759 CCCAACTAAAGACAAAGAGAAAGTGG 60.239 42.308 0.00 0.00 0.00 4.00
543 1276 6.318900 ACCCAACTAAAGACAAAGAGAAAGTG 59.681 38.462 0.00 0.00 0.00 3.16
544 1277 6.424032 ACCCAACTAAAGACAAAGAGAAAGT 58.576 36.000 0.00 0.00 0.00 2.66
545 1278 6.768381 AGACCCAACTAAAGACAAAGAGAAAG 59.232 38.462 0.00 0.00 0.00 2.62
637 1372 9.654663 ACAACATACAAATTAGACTCTACCTTC 57.345 33.333 0.00 0.00 0.00 3.46
681 1416 8.905702 CGAAAGAAGGTTAATCAAATTTGTCAG 58.094 33.333 17.47 0.00 0.00 3.51
743 1478 8.629158 TGCACTTCTAAAAGAACATGTTATTGT 58.371 29.630 18.53 15.65 36.30 2.71
904 1639 0.238553 GGTCAAAGCGTGCTTTCTCC 59.761 55.000 16.45 16.30 43.56 3.71
909 1644 0.321653 CTAGGGGTCAAAGCGTGCTT 60.322 55.000 0.24 0.24 37.98 3.91
912 1647 0.895530 TCTCTAGGGGTCAAAGCGTG 59.104 55.000 0.00 0.00 0.00 5.34
913 1648 1.640917 TTCTCTAGGGGTCAAAGCGT 58.359 50.000 0.00 0.00 0.00 5.07
914 1649 2.168521 TGATTCTCTAGGGGTCAAAGCG 59.831 50.000 0.00 0.00 0.00 4.68
918 1669 4.410228 CAGGATTGATTCTCTAGGGGTCAA 59.590 45.833 11.96 11.96 33.82 3.18
927 1678 2.741228 GCTCACGCAGGATTGATTCTCT 60.741 50.000 0.00 0.00 35.78 3.10
955 1706 2.772691 GCATGGCCAGAGCTTCAGC 61.773 63.158 22.05 7.82 39.73 4.26
956 1707 1.077644 AGCATGGCCAGAGCTTCAG 60.078 57.895 25.27 3.75 39.73 3.02
957 1708 1.077930 GAGCATGGCCAGAGCTTCA 60.078 57.895 29.61 0.00 39.02 3.02
958 1709 0.467384 TAGAGCATGGCCAGAGCTTC 59.533 55.000 29.61 22.62 39.02 3.86
959 1710 1.138568 ATAGAGCATGGCCAGAGCTT 58.861 50.000 29.61 22.01 39.02 3.74
960 1711 0.397187 CATAGAGCATGGCCAGAGCT 59.603 55.000 29.49 29.49 42.17 4.09
961 1712 1.235948 GCATAGAGCATGGCCAGAGC 61.236 60.000 21.88 21.88 44.79 4.09
973 1724 3.193263 ACGCTTCATTCACAGCATAGAG 58.807 45.455 0.00 0.00 35.60 2.43
974 1725 3.190079 GACGCTTCATTCACAGCATAGA 58.810 45.455 0.00 0.00 35.60 1.98
975 1726 2.931969 TGACGCTTCATTCACAGCATAG 59.068 45.455 0.00 0.00 35.60 2.23
976 1727 2.971307 TGACGCTTCATTCACAGCATA 58.029 42.857 0.00 0.00 35.60 3.14
977 1728 1.812235 TGACGCTTCATTCACAGCAT 58.188 45.000 0.00 0.00 35.60 3.79
978 1729 1.532437 CTTGACGCTTCATTCACAGCA 59.468 47.619 0.00 0.00 35.60 4.41
979 1730 1.800586 TCTTGACGCTTCATTCACAGC 59.199 47.619 0.00 0.00 0.00 4.40
980 1731 4.400845 CATTCTTGACGCTTCATTCACAG 58.599 43.478 0.00 0.00 0.00 3.66
981 1732 3.189080 CCATTCTTGACGCTTCATTCACA 59.811 43.478 0.00 0.00 0.00 3.58
982 1733 3.426695 CCCATTCTTGACGCTTCATTCAC 60.427 47.826 0.00 0.00 0.00 3.18
983 1734 2.749076 CCCATTCTTGACGCTTCATTCA 59.251 45.455 0.00 0.00 0.00 2.57
984 1735 2.098117 CCCCATTCTTGACGCTTCATTC 59.902 50.000 0.00 0.00 0.00 2.67
985 1736 2.094675 CCCCATTCTTGACGCTTCATT 58.905 47.619 0.00 0.00 0.00 2.57
986 1737 1.004745 ACCCCATTCTTGACGCTTCAT 59.995 47.619 0.00 0.00 0.00 2.57
987 1738 0.400213 ACCCCATTCTTGACGCTTCA 59.600 50.000 0.00 0.00 0.00 3.02
988 1739 0.804989 CACCCCATTCTTGACGCTTC 59.195 55.000 0.00 0.00 0.00 3.86
989 1740 1.244019 GCACCCCATTCTTGACGCTT 61.244 55.000 0.00 0.00 0.00 4.68
990 1741 1.675641 GCACCCCATTCTTGACGCT 60.676 57.895 0.00 0.00 0.00 5.07
991 1742 2.700773 GGCACCCCATTCTTGACGC 61.701 63.158 0.00 0.00 0.00 5.19
992 1743 0.893270 TTGGCACCCCATTCTTGACG 60.893 55.000 0.00 0.00 41.78 4.35
993 1744 1.337118 TTTGGCACCCCATTCTTGAC 58.663 50.000 0.00 0.00 41.78 3.18
994 1745 2.094100 TTTTGGCACCCCATTCTTGA 57.906 45.000 0.00 0.00 41.78 3.02
995 1746 2.104622 ACTTTTTGGCACCCCATTCTTG 59.895 45.455 0.00 0.00 41.78 3.02
996 1747 2.368548 GACTTTTTGGCACCCCATTCTT 59.631 45.455 0.00 0.00 41.78 2.52
997 1748 1.970640 GACTTTTTGGCACCCCATTCT 59.029 47.619 0.00 0.00 41.78 2.40
998 1749 1.691434 TGACTTTTTGGCACCCCATTC 59.309 47.619 0.00 0.00 41.78 2.67
999 1750 1.799933 TGACTTTTTGGCACCCCATT 58.200 45.000 0.00 0.00 41.78 3.16
1000 1751 1.901833 GATGACTTTTTGGCACCCCAT 59.098 47.619 0.00 0.00 41.78 4.00
1001 1752 1.133199 AGATGACTTTTTGGCACCCCA 60.133 47.619 0.00 0.00 35.90 4.96
1002 1753 1.632589 AGATGACTTTTTGGCACCCC 58.367 50.000 0.00 0.00 35.90 4.95
1003 1754 4.079253 TCTAAGATGACTTTTTGGCACCC 58.921 43.478 0.00 0.00 35.90 4.61
1004 1755 5.003804 TCTCTAAGATGACTTTTTGGCACC 58.996 41.667 0.00 0.00 35.90 5.01
1005 1756 5.389935 CGTCTCTAAGATGACTTTTTGGCAC 60.390 44.000 0.00 0.00 35.90 5.01
1006 1757 4.690748 CGTCTCTAAGATGACTTTTTGGCA 59.309 41.667 0.00 0.00 38.56 4.92
1007 1758 4.093556 CCGTCTCTAAGATGACTTTTTGGC 59.906 45.833 0.00 0.00 37.53 4.52
1008 1759 5.479306 TCCGTCTCTAAGATGACTTTTTGG 58.521 41.667 0.00 0.00 37.53 3.28
1009 1760 6.456181 GCATCCGTCTCTAAGATGACTTTTTG 60.456 42.308 3.51 0.00 39.84 2.44
1010 1761 5.582665 GCATCCGTCTCTAAGATGACTTTTT 59.417 40.000 3.51 0.00 39.84 1.94
1011 1762 5.112686 GCATCCGTCTCTAAGATGACTTTT 58.887 41.667 3.51 0.00 39.84 2.27
1012 1763 4.160439 TGCATCCGTCTCTAAGATGACTTT 59.840 41.667 3.51 0.00 39.84 2.66
1013 1764 3.701542 TGCATCCGTCTCTAAGATGACTT 59.298 43.478 3.51 0.00 39.84 3.01
1014 1765 3.291584 TGCATCCGTCTCTAAGATGACT 58.708 45.455 3.51 0.00 39.84 3.41
1015 1766 3.067461 ACTGCATCCGTCTCTAAGATGAC 59.933 47.826 3.51 0.00 39.84 3.06
1016 1767 3.291584 ACTGCATCCGTCTCTAAGATGA 58.708 45.455 3.51 0.00 39.84 2.92
1017 1768 3.724508 ACTGCATCCGTCTCTAAGATG 57.275 47.619 0.00 0.00 40.30 2.90
1018 1769 3.739519 GCAACTGCATCCGTCTCTAAGAT 60.740 47.826 0.00 0.00 41.59 2.40
1019 1770 2.417379 GCAACTGCATCCGTCTCTAAGA 60.417 50.000 0.00 0.00 41.59 2.10
1020 1771 1.929836 GCAACTGCATCCGTCTCTAAG 59.070 52.381 0.00 0.00 41.59 2.18
1021 1772 1.550524 AGCAACTGCATCCGTCTCTAA 59.449 47.619 4.22 0.00 45.16 2.10
1022 1773 1.135139 GAGCAACTGCATCCGTCTCTA 59.865 52.381 4.22 0.00 45.16 2.43
1023 1774 0.108424 GAGCAACTGCATCCGTCTCT 60.108 55.000 4.22 0.00 45.16 3.10
1024 1775 0.108424 AGAGCAACTGCATCCGTCTC 60.108 55.000 4.22 0.00 45.16 3.36
1025 1776 1.186200 TAGAGCAACTGCATCCGTCT 58.814 50.000 4.22 0.36 45.16 4.18
1026 1777 2.010145 TTAGAGCAACTGCATCCGTC 57.990 50.000 4.22 0.00 45.16 4.79
1027 1778 2.350522 CTTTAGAGCAACTGCATCCGT 58.649 47.619 4.22 0.00 45.16 4.69
1040 1791 5.466728 TCGCTTATAATTGCCTGCTTTAGAG 59.533 40.000 0.00 0.00 0.00 2.43
1041 1792 5.236478 GTCGCTTATAATTGCCTGCTTTAGA 59.764 40.000 0.00 0.00 0.00 2.10
1042 1793 5.444122 GTCGCTTATAATTGCCTGCTTTAG 58.556 41.667 0.00 0.00 0.00 1.85
1043 1794 4.274950 GGTCGCTTATAATTGCCTGCTTTA 59.725 41.667 0.00 0.00 0.00 1.85
1044 1795 3.066760 GGTCGCTTATAATTGCCTGCTTT 59.933 43.478 0.00 0.00 0.00 3.51
1045 1796 2.618709 GGTCGCTTATAATTGCCTGCTT 59.381 45.455 0.00 0.00 0.00 3.91
1046 1797 2.158755 AGGTCGCTTATAATTGCCTGCT 60.159 45.455 0.00 0.00 0.00 4.24
1047 1798 2.031682 CAGGTCGCTTATAATTGCCTGC 60.032 50.000 10.50 0.00 36.12 4.85
1048 1799 3.206150 ACAGGTCGCTTATAATTGCCTG 58.794 45.455 16.96 16.96 45.26 4.85
1049 1800 3.560636 ACAGGTCGCTTATAATTGCCT 57.439 42.857 0.00 0.00 0.00 4.75
1050 1801 3.183775 CGTACAGGTCGCTTATAATTGCC 59.816 47.826 0.00 0.00 0.00 4.52
1051 1802 4.046462 TCGTACAGGTCGCTTATAATTGC 58.954 43.478 0.00 0.00 0.00 3.56
1052 1803 5.279384 AGTCGTACAGGTCGCTTATAATTG 58.721 41.667 0.00 0.00 0.00 2.32
1053 1804 5.511234 AGTCGTACAGGTCGCTTATAATT 57.489 39.130 0.00 0.00 0.00 1.40
1054 1805 5.762218 AGTAGTCGTACAGGTCGCTTATAAT 59.238 40.000 0.00 0.00 0.00 1.28
1055 1806 5.118990 AGTAGTCGTACAGGTCGCTTATAA 58.881 41.667 0.00 0.00 0.00 0.98
1056 1807 4.697514 AGTAGTCGTACAGGTCGCTTATA 58.302 43.478 0.00 0.00 0.00 0.98
1057 1808 3.539604 AGTAGTCGTACAGGTCGCTTAT 58.460 45.455 0.00 0.00 0.00 1.73
1058 1809 2.932614 GAGTAGTCGTACAGGTCGCTTA 59.067 50.000 0.00 0.00 0.00 3.09
1059 1810 1.736681 GAGTAGTCGTACAGGTCGCTT 59.263 52.381 0.00 0.00 0.00 4.68
1060 1811 1.338484 TGAGTAGTCGTACAGGTCGCT 60.338 52.381 0.00 0.00 0.00 4.93
1061 1812 1.081892 TGAGTAGTCGTACAGGTCGC 58.918 55.000 0.00 0.00 0.00 5.19
1062 1813 2.475852 GCTTGAGTAGTCGTACAGGTCG 60.476 54.545 0.00 0.00 0.00 4.79
1063 1814 2.159407 GGCTTGAGTAGTCGTACAGGTC 60.159 54.545 0.00 0.00 0.00 3.85
1064 1815 1.817447 GGCTTGAGTAGTCGTACAGGT 59.183 52.381 0.00 0.00 0.00 4.00
1065 1816 2.093106 AGGCTTGAGTAGTCGTACAGG 58.907 52.381 0.00 0.00 32.23 4.00
1066 1817 3.312973 CCTAGGCTTGAGTAGTCGTACAG 59.687 52.174 0.00 0.00 32.23 2.74
1067 1818 3.276857 CCTAGGCTTGAGTAGTCGTACA 58.723 50.000 0.00 0.00 32.23 2.90
1068 1819 2.033174 GCCTAGGCTTGAGTAGTCGTAC 59.967 54.545 27.17 0.00 38.26 3.67
1069 1820 2.295885 GCCTAGGCTTGAGTAGTCGTA 58.704 52.381 27.17 0.00 38.26 3.43
1070 1821 1.104630 GCCTAGGCTTGAGTAGTCGT 58.895 55.000 27.17 0.00 38.26 4.34
1071 1822 0.029567 CGCCTAGGCTTGAGTAGTCG 59.970 60.000 30.55 7.86 39.32 4.18
1072 1823 1.104630 ACGCCTAGGCTTGAGTAGTC 58.895 55.000 30.55 0.00 39.32 2.59
1073 1824 0.818296 CACGCCTAGGCTTGAGTAGT 59.182 55.000 31.26 17.27 42.01 2.73
1074 1825 0.528684 GCACGCCTAGGCTTGAGTAG 60.529 60.000 36.97 20.39 42.01 2.57
1075 1826 0.970937 AGCACGCCTAGGCTTGAGTA 60.971 55.000 36.97 0.00 42.01 2.59
1076 1827 2.266055 GCACGCCTAGGCTTGAGT 59.734 61.111 36.97 22.76 42.01 3.41
1077 1828 1.812922 CAGCACGCCTAGGCTTGAG 60.813 63.158 36.97 25.63 42.01 3.02
1078 1829 2.111999 AACAGCACGCCTAGGCTTGA 62.112 55.000 36.97 0.00 42.01 3.02
1079 1830 1.237285 AAACAGCACGCCTAGGCTTG 61.237 55.000 30.74 30.74 42.28 4.01
1080 1831 0.323629 TAAACAGCACGCCTAGGCTT 59.676 50.000 30.55 20.20 38.56 4.35
1081 1832 0.323629 TTAAACAGCACGCCTAGGCT 59.676 50.000 30.55 15.41 42.06 4.58
1082 1833 1.130561 CTTTAAACAGCACGCCTAGGC 59.869 52.381 24.75 24.75 37.85 3.93
1083 1834 2.673368 CTCTTTAAACAGCACGCCTAGG 59.327 50.000 3.67 3.67 0.00 3.02
1084 1835 3.585862 TCTCTTTAAACAGCACGCCTAG 58.414 45.455 0.00 0.00 0.00 3.02
1085 1836 3.671008 TCTCTTTAAACAGCACGCCTA 57.329 42.857 0.00 0.00 0.00 3.93
1086 1837 2.543777 TCTCTTTAAACAGCACGCCT 57.456 45.000 0.00 0.00 0.00 5.52
1087 1838 4.630069 TCTTATCTCTTTAAACAGCACGCC 59.370 41.667 0.00 0.00 0.00 5.68
1088 1839 5.725316 GCTCTTATCTCTTTAAACAGCACGC 60.725 44.000 0.00 0.00 0.00 5.34
1089 1840 5.348724 TGCTCTTATCTCTTTAAACAGCACG 59.651 40.000 0.00 0.00 28.94 5.34
1090 1841 6.370166 ACTGCTCTTATCTCTTTAAACAGCAC 59.630 38.462 0.00 0.00 30.03 4.40
1091 1842 6.369890 CACTGCTCTTATCTCTTTAAACAGCA 59.630 38.462 0.00 0.00 31.32 4.41
1092 1843 6.370166 ACACTGCTCTTATCTCTTTAAACAGC 59.630 38.462 0.00 0.00 0.00 4.40
1093 1844 7.897575 ACACTGCTCTTATCTCTTTAAACAG 57.102 36.000 0.00 0.00 0.00 3.16
1094 1845 7.307989 GCAACACTGCTCTTATCTCTTTAAACA 60.308 37.037 0.00 0.00 45.74 2.83
1095 1846 7.018235 GCAACACTGCTCTTATCTCTTTAAAC 58.982 38.462 0.00 0.00 45.74 2.01
1096 1847 7.133891 GCAACACTGCTCTTATCTCTTTAAA 57.866 36.000 0.00 0.00 45.74 1.52
1097 1848 6.727824 GCAACACTGCTCTTATCTCTTTAA 57.272 37.500 0.00 0.00 45.74 1.52
1112 1863 3.708890 TGAAAAGCTGATTGCAACACTG 58.291 40.909 0.00 4.68 45.94 3.66
1113 1864 4.389890 TTGAAAAGCTGATTGCAACACT 57.610 36.364 0.00 0.00 45.94 3.55
1114 1865 4.986659 AGATTGAAAAGCTGATTGCAACAC 59.013 37.500 0.00 0.00 43.53 3.32
1115 1866 5.204409 AGATTGAAAAGCTGATTGCAACA 57.796 34.783 0.00 1.08 43.53 3.33
1116 1867 5.464389 ACAAGATTGAAAAGCTGATTGCAAC 59.536 36.000 0.00 0.00 45.10 4.17
1117 1868 5.603596 ACAAGATTGAAAAGCTGATTGCAA 58.396 33.333 0.00 0.00 45.10 4.08
1118 1869 5.204409 ACAAGATTGAAAAGCTGATTGCA 57.796 34.783 0.00 0.00 45.10 4.08
1119 1870 7.383300 ACTTTACAAGATTGAAAAGCTGATTGC 59.617 33.333 0.00 0.00 45.10 3.56
1120 1871 8.807667 ACTTTACAAGATTGAAAAGCTGATTG 57.192 30.769 0.00 0.00 45.10 2.67
1122 1873 9.507329 TCTACTTTACAAGATTGAAAAGCTGAT 57.493 29.630 0.00 0.00 45.10 2.90
1123 1874 8.902540 TCTACTTTACAAGATTGAAAAGCTGA 57.097 30.769 0.00 0.00 45.10 4.26
1124 1875 9.950680 TTTCTACTTTACAAGATTGAAAAGCTG 57.049 29.630 0.00 0.00 45.10 4.24
1126 1877 9.181805 GGTTTCTACTTTACAAGATTGAAAAGC 57.818 33.333 0.00 0.00 31.99 3.51
1129 1880 8.349983 GCAGGTTTCTACTTTACAAGATTGAAA 58.650 33.333 0.00 0.00 0.00 2.69
1130 1881 7.040686 GGCAGGTTTCTACTTTACAAGATTGAA 60.041 37.037 0.00 0.00 0.00 2.69
1131 1882 6.430000 GGCAGGTTTCTACTTTACAAGATTGA 59.570 38.462 0.00 0.00 0.00 2.57
1132 1883 6.349363 GGGCAGGTTTCTACTTTACAAGATTG 60.349 42.308 0.00 0.00 0.00 2.67
1133 1884 5.710567 GGGCAGGTTTCTACTTTACAAGATT 59.289 40.000 0.00 0.00 0.00 2.40
1134 1885 5.222048 TGGGCAGGTTTCTACTTTACAAGAT 60.222 40.000 0.00 0.00 0.00 2.40
1135 1886 4.103469 TGGGCAGGTTTCTACTTTACAAGA 59.897 41.667 0.00 0.00 0.00 3.02
1136 1887 4.215613 GTGGGCAGGTTTCTACTTTACAAG 59.784 45.833 0.00 0.00 0.00 3.16
1137 1888 4.139038 GTGGGCAGGTTTCTACTTTACAA 58.861 43.478 0.00 0.00 0.00 2.41
1138 1889 3.746940 GTGGGCAGGTTTCTACTTTACA 58.253 45.455 0.00 0.00 0.00 2.41
1139 1890 2.740447 CGTGGGCAGGTTTCTACTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
1140 1891 2.289819 CCGTGGGCAGGTTTCTACTTTA 60.290 50.000 0.00 0.00 0.00 1.85
1141 1892 1.544759 CCGTGGGCAGGTTTCTACTTT 60.545 52.381 0.00 0.00 0.00 2.66
1142 1893 0.036306 CCGTGGGCAGGTTTCTACTT 59.964 55.000 0.00 0.00 0.00 2.24
1143 1894 1.677552 CCGTGGGCAGGTTTCTACT 59.322 57.895 0.00 0.00 0.00 2.57
1144 1895 1.376812 CCCGTGGGCAGGTTTCTAC 60.377 63.158 0.00 0.00 0.00 2.59
1145 1896 3.074281 CCCGTGGGCAGGTTTCTA 58.926 61.111 0.00 0.00 0.00 2.10
1155 1906 3.253188 CAGAAATATTACATGCCCGTGGG 59.747 47.826 0.00 0.00 38.57 4.61
1156 1907 3.304659 GCAGAAATATTACATGCCCGTGG 60.305 47.826 7.79 0.00 0.00 4.94
1157 1908 3.314913 TGCAGAAATATTACATGCCCGTG 59.685 43.478 13.73 0.00 36.04 4.94
1158 1909 3.315191 GTGCAGAAATATTACATGCCCGT 59.685 43.478 13.73 0.00 36.04 5.28
1159 1910 3.314913 TGTGCAGAAATATTACATGCCCG 59.685 43.478 13.73 0.00 36.04 6.13
1160 1911 4.339247 AGTGTGCAGAAATATTACATGCCC 59.661 41.667 13.73 6.16 36.04 5.36
1161 1912 5.163622 ACAGTGTGCAGAAATATTACATGCC 60.164 40.000 13.73 8.13 36.04 4.40
1162 1913 5.883661 ACAGTGTGCAGAAATATTACATGC 58.116 37.500 0.00 10.83 37.40 4.06
1163 1914 9.494479 CTAAACAGTGTGCAGAAATATTACATG 57.506 33.333 0.00 0.00 0.00 3.21
1164 1915 8.184192 GCTAAACAGTGTGCAGAAATATTACAT 58.816 33.333 0.00 0.00 0.00 2.29
1165 1916 7.390440 AGCTAAACAGTGTGCAGAAATATTACA 59.610 33.333 0.00 0.00 0.00 2.41
1166 1917 7.693951 CAGCTAAACAGTGTGCAGAAATATTAC 59.306 37.037 0.00 0.00 0.00 1.89
1167 1918 7.626240 GCAGCTAAACAGTGTGCAGAAATATTA 60.626 37.037 0.00 0.00 34.18 0.98
1168 1919 6.615088 CAGCTAAACAGTGTGCAGAAATATT 58.385 36.000 0.00 0.00 0.00 1.28
1169 1920 5.392380 GCAGCTAAACAGTGTGCAGAAATAT 60.392 40.000 0.00 0.00 34.18 1.28
1170 1921 4.083324 GCAGCTAAACAGTGTGCAGAAATA 60.083 41.667 0.00 0.00 34.18 1.40
1171 1922 3.304928 GCAGCTAAACAGTGTGCAGAAAT 60.305 43.478 0.00 0.00 34.18 2.17
1172 1923 2.033299 GCAGCTAAACAGTGTGCAGAAA 59.967 45.455 0.00 0.00 34.18 2.52
1173 1924 1.603802 GCAGCTAAACAGTGTGCAGAA 59.396 47.619 0.00 0.00 34.18 3.02
1174 1925 1.202687 AGCAGCTAAACAGTGTGCAGA 60.203 47.619 0.00 0.00 36.57 4.26
1175 1926 1.196354 GAGCAGCTAAACAGTGTGCAG 59.804 52.381 0.00 0.00 36.57 4.41
1176 1927 1.229428 GAGCAGCTAAACAGTGTGCA 58.771 50.000 0.00 0.00 36.57 4.57
1177 1928 1.229428 TGAGCAGCTAAACAGTGTGC 58.771 50.000 0.00 0.00 0.00 4.57
1178 1929 2.161012 CCATGAGCAGCTAAACAGTGTG 59.839 50.000 0.00 0.00 0.00 3.82
1179 1930 2.224621 ACCATGAGCAGCTAAACAGTGT 60.225 45.455 0.00 0.00 0.00 3.55
1180 1931 2.161012 CACCATGAGCAGCTAAACAGTG 59.839 50.000 0.00 0.00 0.00 3.66
1181 1932 2.224621 ACACCATGAGCAGCTAAACAGT 60.225 45.455 0.00 0.00 0.00 3.55
1182 1933 2.430465 ACACCATGAGCAGCTAAACAG 58.570 47.619 0.00 0.00 0.00 3.16
1183 1934 2.566833 ACACCATGAGCAGCTAAACA 57.433 45.000 0.00 0.00 0.00 2.83
1184 1935 3.941483 ACATACACCATGAGCAGCTAAAC 59.059 43.478 0.00 0.00 38.10 2.01
1185 1936 4.220693 ACATACACCATGAGCAGCTAAA 57.779 40.909 0.00 0.00 38.10 1.85
1186 1937 3.912496 ACATACACCATGAGCAGCTAA 57.088 42.857 0.00 0.00 38.10 3.09
1187 1938 4.262592 CCATACATACACCATGAGCAGCTA 60.263 45.833 0.00 0.00 38.10 3.32
1188 1939 3.495629 CCATACATACACCATGAGCAGCT 60.496 47.826 0.00 0.00 38.10 4.24
1189 1940 2.810274 CCATACATACACCATGAGCAGC 59.190 50.000 0.00 0.00 38.10 5.25
1190 1941 4.313282 CTCCATACATACACCATGAGCAG 58.687 47.826 0.00 0.00 38.10 4.24
1191 1942 3.494924 GCTCCATACATACACCATGAGCA 60.495 47.826 0.00 0.00 38.10 4.26
1192 1943 3.070018 GCTCCATACATACACCATGAGC 58.930 50.000 0.00 0.00 38.10 4.26
1193 1944 3.320626 CGCTCCATACATACACCATGAG 58.679 50.000 0.00 0.00 38.10 2.90
1194 1945 2.037121 CCGCTCCATACATACACCATGA 59.963 50.000 0.00 0.00 38.10 3.07
1195 1946 2.037121 TCCGCTCCATACATACACCATG 59.963 50.000 0.00 0.00 40.78 3.66
1196 1947 2.325484 TCCGCTCCATACATACACCAT 58.675 47.619 0.00 0.00 0.00 3.55
1197 1948 1.783071 TCCGCTCCATACATACACCA 58.217 50.000 0.00 0.00 0.00 4.17
1198 1949 2.364324 TCTTCCGCTCCATACATACACC 59.636 50.000 0.00 0.00 0.00 4.16
1199 1950 3.643763 CTCTTCCGCTCCATACATACAC 58.356 50.000 0.00 0.00 0.00 2.90
1200 1951 2.035961 GCTCTTCCGCTCCATACATACA 59.964 50.000 0.00 0.00 0.00 2.29
1201 1952 2.297597 AGCTCTTCCGCTCCATACATAC 59.702 50.000 0.00 0.00 34.57 2.39
1202 1953 2.598565 AGCTCTTCCGCTCCATACATA 58.401 47.619 0.00 0.00 34.57 2.29
1203 1954 1.418334 AGCTCTTCCGCTCCATACAT 58.582 50.000 0.00 0.00 34.57 2.29
1204 1955 2.067365 TAGCTCTTCCGCTCCATACA 57.933 50.000 0.00 0.00 41.30 2.29
1205 1956 2.558795 TGATAGCTCTTCCGCTCCATAC 59.441 50.000 0.00 0.00 41.30 2.39
1206 1957 2.822561 CTGATAGCTCTTCCGCTCCATA 59.177 50.000 0.00 0.00 41.30 2.74
1207 1958 1.617850 CTGATAGCTCTTCCGCTCCAT 59.382 52.381 0.00 0.00 41.30 3.41
1208 1959 1.035923 CTGATAGCTCTTCCGCTCCA 58.964 55.000 0.00 0.00 41.30 3.86
1209 1960 1.323412 TCTGATAGCTCTTCCGCTCC 58.677 55.000 0.00 0.00 41.30 4.70
1210 1961 3.658757 AATCTGATAGCTCTTCCGCTC 57.341 47.619 0.00 0.00 41.30 5.03
1211 1962 3.494048 CCAAATCTGATAGCTCTTCCGCT 60.494 47.826 0.00 0.00 43.83 5.52
1212 1963 2.805099 CCAAATCTGATAGCTCTTCCGC 59.195 50.000 0.00 0.00 0.00 5.54
1213 1964 2.805099 GCCAAATCTGATAGCTCTTCCG 59.195 50.000 0.00 0.00 0.00 4.30
1214 1965 4.084011 AGCCAAATCTGATAGCTCTTCC 57.916 45.455 0.00 0.00 0.00 3.46
1215 1966 5.121811 TCAAGCCAAATCTGATAGCTCTTC 58.878 41.667 9.37 0.00 32.19 2.87
1216 1967 5.108187 TCAAGCCAAATCTGATAGCTCTT 57.892 39.130 9.37 1.38 32.19 2.85
1217 1968 4.767578 TCAAGCCAAATCTGATAGCTCT 57.232 40.909 9.37 0.00 32.19 4.09
1218 1969 4.455190 GGATCAAGCCAAATCTGATAGCTC 59.545 45.833 9.37 0.31 32.19 4.09
1219 1970 4.396522 GGATCAAGCCAAATCTGATAGCT 58.603 43.478 0.00 0.00 34.64 3.32
1220 1971 3.188048 CGGATCAAGCCAAATCTGATAGC 59.812 47.826 0.00 0.00 31.15 2.97
1221 1972 4.384056 ACGGATCAAGCCAAATCTGATAG 58.616 43.478 0.00 0.00 33.38 2.08
1222 1973 4.422073 ACGGATCAAGCCAAATCTGATA 57.578 40.909 0.00 0.00 33.38 2.15
1223 1974 3.287867 ACGGATCAAGCCAAATCTGAT 57.712 42.857 0.00 0.00 33.38 2.90
1224 1975 2.787473 ACGGATCAAGCCAAATCTGA 57.213 45.000 0.00 0.00 33.38 3.27
1225 1976 3.428045 GGAAACGGATCAAGCCAAATCTG 60.428 47.826 0.00 0.00 34.95 2.90
1226 1977 2.755103 GGAAACGGATCAAGCCAAATCT 59.245 45.455 0.00 0.00 0.00 2.40
1227 1978 3.150848 GGAAACGGATCAAGCCAAATC 57.849 47.619 0.00 0.00 0.00 2.17
1259 2010 0.307760 CTCGCCAGCGACAAGTTTTT 59.692 50.000 11.27 0.00 44.01 1.94
1260 2011 0.814010 ACTCGCCAGCGACAAGTTTT 60.814 50.000 11.27 0.00 44.01 2.43
1261 2012 1.222115 GACTCGCCAGCGACAAGTTT 61.222 55.000 11.27 0.00 44.01 2.66
1262 2013 1.664965 GACTCGCCAGCGACAAGTT 60.665 57.895 11.27 0.00 44.01 2.66
1263 2014 2.049063 GACTCGCCAGCGACAAGT 60.049 61.111 11.27 7.90 44.01 3.16
1264 2015 2.811317 GGACTCGCCAGCGACAAG 60.811 66.667 11.27 4.39 44.01 3.16
1265 2016 3.611674 TGGACTCGCCAGCGACAA 61.612 61.111 11.27 0.00 43.33 3.18
1272 2023 4.704833 GGCAAGCTGGACTCGCCA 62.705 66.667 0.00 0.00 46.96 5.69
1273 2024 4.400961 AGGCAAGCTGGACTCGCC 62.401 66.667 0.00 0.00 43.31 5.54
1274 2025 3.123620 CAGGCAAGCTGGACTCGC 61.124 66.667 0.00 0.00 0.00 5.03
1275 2026 2.435586 CCAGGCAAGCTGGACTCG 60.436 66.667 0.00 0.00 44.39 4.18
1276 2027 1.553690 TACCCAGGCAAGCTGGACTC 61.554 60.000 0.00 0.00 44.39 3.36
1277 2028 1.133809 TTACCCAGGCAAGCTGGACT 61.134 55.000 8.90 0.00 44.39 3.85
1278 2029 0.034089 ATTACCCAGGCAAGCTGGAC 60.034 55.000 8.90 0.00 44.39 4.02
1279 2030 0.034186 CATTACCCAGGCAAGCTGGA 60.034 55.000 8.90 0.00 44.39 3.86
1280 2031 1.039233 CCATTACCCAGGCAAGCTGG 61.039 60.000 0.00 0.00 41.45 4.85
1281 2032 0.034186 TCCATTACCCAGGCAAGCTG 60.034 55.000 0.00 0.00 0.00 4.24
1282 2033 0.704076 TTCCATTACCCAGGCAAGCT 59.296 50.000 0.00 0.00 0.00 3.74
1283 2034 1.780503 ATTCCATTACCCAGGCAAGC 58.219 50.000 0.00 0.00 0.00 4.01
1284 2035 3.897239 TGTATTCCATTACCCAGGCAAG 58.103 45.455 0.00 0.00 0.00 4.01
1285 2036 4.534647 ATGTATTCCATTACCCAGGCAA 57.465 40.909 0.00 0.00 0.00 4.52
1286 2037 4.534647 AATGTATTCCATTACCCAGGCA 57.465 40.909 0.00 0.00 42.03 4.75
1287 2038 4.649218 ACAAATGTATTCCATTACCCAGGC 59.351 41.667 0.00 0.00 43.04 4.85
1288 2039 5.656416 ACACAAATGTATTCCATTACCCAGG 59.344 40.000 0.00 0.00 43.04 4.45
1289 2040 6.773976 ACACAAATGTATTCCATTACCCAG 57.226 37.500 0.00 0.00 43.04 4.45
1290 2041 7.233553 TGAAACACAAATGTATTCCATTACCCA 59.766 33.333 8.10 0.00 43.04 4.51
1291 2042 7.607250 TGAAACACAAATGTATTCCATTACCC 58.393 34.615 8.10 0.00 43.04 3.69
1292 2043 9.482627 TTTGAAACACAAATGTATTCCATTACC 57.517 29.630 8.10 0.00 43.04 2.85
1319 2070 9.971922 CTTGGTCTATCAATGTTTCTTTCTTTT 57.028 29.630 0.00 0.00 0.00 2.27
1320 2071 9.354673 TCTTGGTCTATCAATGTTTCTTTCTTT 57.645 29.630 0.00 0.00 0.00 2.52
1321 2072 8.924511 TCTTGGTCTATCAATGTTTCTTTCTT 57.075 30.769 0.00 0.00 0.00 2.52
1322 2073 7.609532 CCTCTTGGTCTATCAATGTTTCTTTCT 59.390 37.037 0.00 0.00 0.00 2.52
1323 2074 7.627300 GCCTCTTGGTCTATCAATGTTTCTTTC 60.627 40.741 0.00 0.00 35.27 2.62
1324 2075 6.151817 GCCTCTTGGTCTATCAATGTTTCTTT 59.848 38.462 0.00 0.00 35.27 2.52
1325 2076 5.649831 GCCTCTTGGTCTATCAATGTTTCTT 59.350 40.000 0.00 0.00 35.27 2.52
1326 2077 5.045286 AGCCTCTTGGTCTATCAATGTTTCT 60.045 40.000 0.00 0.00 35.27 2.52
1420 2172 8.079809 AGATAAAATCAAAACGAAACAACCGAT 58.920 29.630 0.00 0.00 0.00 4.18
1478 2230 0.106167 TACCGCCTCTAGCATCACCT 60.106 55.000 0.00 0.00 44.04 4.00
1528 2280 2.727544 GCCACCACAACAACGCAT 59.272 55.556 0.00 0.00 0.00 4.73
1581 2333 1.679977 CCCAAGGGGCTCACACATG 60.680 63.158 0.00 0.00 35.35 3.21
1582 2334 1.852157 TCCCAAGGGGCTCACACAT 60.852 57.895 5.08 0.00 43.94 3.21
1626 2378 7.312154 TCATTTGAGCGTTATAACTGCAATTT 58.688 30.769 24.22 11.13 33.20 1.82
1643 2395 0.893270 TGTGGGCCGGTTCATTTGAG 60.893 55.000 1.90 0.00 0.00 3.02
1651 2403 2.203437 GAGGTTTGTGGGCCGGTT 60.203 61.111 1.90 0.00 0.00 4.44
2199 2954 4.691685 CGCGTCACCTTCTACTCTAGATAT 59.308 45.833 0.00 0.00 34.22 1.63
2232 2987 0.828022 TCATTACCGAGGAATGGCGT 59.172 50.000 8.44 0.00 35.42 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.