Multiple sequence alignment - TraesCS7A01G229900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G229900 chr7A 100.000 3060 0 0 1 3060 200232372 200229313 0.000000e+00 5651.0
1 TraesCS7A01G229900 chr7A 81.364 220 28 9 192 400 671404836 671404619 1.890000e-37 167.0
2 TraesCS7A01G229900 chr7A 73.684 228 50 10 2773 2994 37947418 37947641 2.530000e-11 80.5
3 TraesCS7A01G229900 chr7D 92.462 2348 110 26 688 2993 191571378 191569056 0.000000e+00 3293.0
4 TraesCS7A01G229900 chr7D 73.413 252 57 9 2748 2994 38257485 38257731 5.440000e-13 86.1
5 TraesCS7A01G229900 chr7B 89.022 1922 125 32 656 2526 336812102 336810216 0.000000e+00 2302.0
6 TraesCS7A01G229900 chr7B 84.790 309 38 7 2607 2914 336809939 336809639 4.960000e-78 302.0
7 TraesCS7A01G229900 chr7B 79.891 184 35 2 2700 2882 612890525 612890343 1.910000e-27 134.0
8 TraesCS7A01G229900 chr7B 84.553 123 18 1 2698 2820 82697352 82697231 1.490000e-23 121.0
9 TraesCS7A01G229900 chr7B 84.375 64 8 2 2838 2900 191520694 191520756 9.160000e-06 62.1
10 TraesCS7A01G229900 chr1A 79.365 252 49 3 2743 2993 202090678 202090927 1.130000e-39 174.0
11 TraesCS7A01G229900 chr1A 81.364 220 28 9 192 400 98021978 98021761 1.890000e-37 167.0
12 TraesCS7A01G229900 chr1A 81.364 220 28 9 192 400 261368626 261368409 1.890000e-37 167.0
13 TraesCS7A01G229900 chr1A 81.364 220 28 9 192 400 282546300 282546517 1.890000e-37 167.0
14 TraesCS7A01G229900 chr1A 81.364 220 28 9 192 400 309691780 309691563 1.890000e-37 167.0
15 TraesCS7A01G229900 chr5B 81.818 220 27 9 192 400 641808496 641808279 4.060000e-39 172.0
16 TraesCS7A01G229900 chr5B 81.364 220 28 9 192 400 521402542 521402325 1.890000e-37 167.0
17 TraesCS7A01G229900 chr4B 81.818 220 27 9 192 400 385922903 385922686 4.060000e-39 172.0
18 TraesCS7A01G229900 chr6A 81.364 220 28 9 192 400 359051192 359050975 1.890000e-37 167.0
19 TraesCS7A01G229900 chr3B 78.543 247 42 11 2738 2976 257036459 257036216 5.280000e-33 152.0
20 TraesCS7A01G229900 chr5A 81.699 153 27 1 2697 2849 482942169 482942018 3.200000e-25 126.0
21 TraesCS7A01G229900 chr6D 77.889 199 42 2 2701 2898 116945605 116945802 4.140000e-24 122.0
22 TraesCS7A01G229900 chr3D 88.889 72 7 1 2929 2999 546663045 546662974 1.510000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G229900 chr7A 200229313 200232372 3059 True 5651 5651 100.000 1 3060 1 chr7A.!!$R1 3059
1 TraesCS7A01G229900 chr7D 191569056 191571378 2322 True 3293 3293 92.462 688 2993 1 chr7D.!!$R1 2305
2 TraesCS7A01G229900 chr7B 336809639 336812102 2463 True 1302 2302 86.906 656 2914 2 chr7B.!!$R3 2258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 451 0.095245 GATGATGTTGTCCGTGCACG 59.905 55.0 31.77 31.77 39.44 5.34 F
578 579 0.179062 GTCATCATCCGGCTGCTCTT 60.179 55.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 1946 0.389426 GTGCCGGCTAAGAAACGAGA 60.389 55.000 29.7 0.0 0.00 4.04 R
2442 2527 1.480545 ACTTGTTCAACCAGTTTGGCC 59.519 47.619 0.0 0.0 42.67 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.902881 CCTATGGAGGGATATCTGCAC 57.097 52.381 2.05 0.00 39.48 4.57
32 33 2.167281 CCTATGGAGGGATATCTGCACG 59.833 54.545 2.05 0.00 39.48 5.34
33 34 0.979665 ATGGAGGGATATCTGCACGG 59.020 55.000 2.05 0.00 37.90 4.94
34 35 0.105709 TGGAGGGATATCTGCACGGA 60.106 55.000 2.05 0.00 30.16 4.69
35 36 0.318762 GGAGGGATATCTGCACGGAC 59.681 60.000 2.05 0.00 0.00 4.79
36 37 1.040646 GAGGGATATCTGCACGGACA 58.959 55.000 2.05 0.00 0.00 4.02
37 38 1.000283 GAGGGATATCTGCACGGACAG 60.000 57.143 2.05 0.79 39.12 3.51
38 39 0.601311 GGGATATCTGCACGGACAGC 60.601 60.000 2.05 0.00 37.59 4.40
39 40 0.104855 GGATATCTGCACGGACAGCA 59.895 55.000 2.05 0.00 40.19 4.41
40 41 1.212616 GATATCTGCACGGACAGCAC 58.787 55.000 0.00 0.00 37.02 4.40
41 42 0.528466 ATATCTGCACGGACAGCACG 60.528 55.000 2.30 0.00 37.02 5.34
42 43 2.557059 TATCTGCACGGACAGCACGG 62.557 60.000 2.30 0.00 37.02 4.94
43 44 4.969196 CTGCACGGACAGCACGGT 62.969 66.667 0.00 0.00 37.02 4.83
66 67 4.547406 CAATACTGCAGATGACATGTGG 57.453 45.455 23.35 1.58 0.00 4.17
67 68 2.696989 TACTGCAGATGACATGTGGG 57.303 50.000 23.35 0.00 0.00 4.61
68 69 0.694771 ACTGCAGATGACATGTGGGT 59.305 50.000 23.35 0.00 0.00 4.51
69 70 1.092348 CTGCAGATGACATGTGGGTG 58.908 55.000 8.42 0.00 0.00 4.61
70 71 0.691904 TGCAGATGACATGTGGGTGA 59.308 50.000 13.93 0.00 0.00 4.02
71 72 1.339342 TGCAGATGACATGTGGGTGAG 60.339 52.381 13.93 0.00 0.00 3.51
72 73 2.015588 GCAGATGACATGTGGGTGAGG 61.016 57.143 13.93 0.00 0.00 3.86
73 74 0.254178 AGATGACATGTGGGTGAGGC 59.746 55.000 1.15 0.00 0.00 4.70
74 75 0.749454 GATGACATGTGGGTGAGGCC 60.749 60.000 1.15 0.00 0.00 5.19
84 85 4.308526 GTGAGGCCCACATGACAG 57.691 61.111 16.71 0.00 45.03 3.51
85 86 2.042831 GTGAGGCCCACATGACAGC 61.043 63.158 16.71 0.00 45.03 4.40
86 87 2.821366 GAGGCCCACATGACAGCG 60.821 66.667 0.00 0.00 0.00 5.18
87 88 4.415150 AGGCCCACATGACAGCGG 62.415 66.667 0.00 0.00 0.00 5.52
92 93 3.490759 CACATGACAGCGGCCGTC 61.491 66.667 28.70 19.09 0.00 4.79
93 94 4.002506 ACATGACAGCGGCCGTCA 62.003 61.111 28.70 22.82 46.77 4.35
94 95 3.490759 CATGACAGCGGCCGTCAC 61.491 66.667 28.70 15.97 45.64 3.67
95 96 3.695606 ATGACAGCGGCCGTCACT 61.696 61.111 28.70 13.01 45.64 3.41
96 97 3.939837 ATGACAGCGGCCGTCACTG 62.940 63.158 28.70 26.08 45.64 3.66
102 103 4.056125 CGGCCGTCACTGCAGAGA 62.056 66.667 23.35 16.37 0.00 3.10
103 104 2.343758 GGCCGTCACTGCAGAGAA 59.656 61.111 23.35 1.59 0.00 2.87
104 105 1.078848 GGCCGTCACTGCAGAGAAT 60.079 57.895 23.35 0.00 0.00 2.40
105 106 0.674895 GGCCGTCACTGCAGAGAATT 60.675 55.000 23.35 0.00 0.00 2.17
106 107 1.160137 GCCGTCACTGCAGAGAATTT 58.840 50.000 23.35 0.00 0.00 1.82
107 108 1.135859 GCCGTCACTGCAGAGAATTTG 60.136 52.381 23.35 7.11 0.00 2.32
108 109 1.135859 CCGTCACTGCAGAGAATTTGC 60.136 52.381 23.35 4.64 41.86 3.68
110 111 2.663879 CGTCACTGCAGAGAATTTGCAC 60.664 50.000 23.35 3.74 45.89 4.57
111 112 1.881973 TCACTGCAGAGAATTTGCACC 59.118 47.619 23.35 0.00 45.89 5.01
112 113 1.068055 CACTGCAGAGAATTTGCACCC 60.068 52.381 23.35 0.00 45.89 4.61
113 114 0.529378 CTGCAGAGAATTTGCACCCC 59.471 55.000 8.42 0.00 45.89 4.95
114 115 1.243342 TGCAGAGAATTTGCACCCCG 61.243 55.000 0.00 0.00 45.89 5.73
115 116 0.960364 GCAGAGAATTTGCACCCCGA 60.960 55.000 0.00 0.00 41.17 5.14
116 117 1.089920 CAGAGAATTTGCACCCCGAG 58.910 55.000 0.00 0.00 0.00 4.63
117 118 0.693049 AGAGAATTTGCACCCCGAGT 59.307 50.000 0.00 0.00 0.00 4.18
127 128 2.973148 ACCCCGAGTGAGAACCTAC 58.027 57.895 0.00 0.00 0.00 3.18
128 129 0.408700 ACCCCGAGTGAGAACCTACT 59.591 55.000 0.00 0.00 0.00 2.57
129 130 0.818296 CCCCGAGTGAGAACCTACTG 59.182 60.000 0.00 0.00 0.00 2.74
130 131 1.546961 CCCGAGTGAGAACCTACTGT 58.453 55.000 0.00 0.00 0.00 3.55
131 132 2.619849 CCCCGAGTGAGAACCTACTGTA 60.620 54.545 0.00 0.00 0.00 2.74
132 133 2.422832 CCCGAGTGAGAACCTACTGTAC 59.577 54.545 0.00 0.00 0.00 2.90
133 134 2.422832 CCGAGTGAGAACCTACTGTACC 59.577 54.545 0.00 0.00 0.00 3.34
134 135 2.095532 CGAGTGAGAACCTACTGTACCG 59.904 54.545 0.00 0.00 0.00 4.02
135 136 3.080319 GAGTGAGAACCTACTGTACCGT 58.920 50.000 0.00 0.00 0.00 4.83
136 137 3.494332 AGTGAGAACCTACTGTACCGTT 58.506 45.455 0.00 0.00 0.00 4.44
137 138 4.655963 AGTGAGAACCTACTGTACCGTTA 58.344 43.478 0.00 0.00 0.00 3.18
138 139 4.457257 AGTGAGAACCTACTGTACCGTTAC 59.543 45.833 0.00 0.00 0.00 2.50
139 140 4.457257 GTGAGAACCTACTGTACCGTTACT 59.543 45.833 0.00 0.00 0.00 2.24
140 141 5.048434 GTGAGAACCTACTGTACCGTTACTT 60.048 44.000 0.00 0.00 0.00 2.24
141 142 6.149474 GTGAGAACCTACTGTACCGTTACTTA 59.851 42.308 0.00 0.00 0.00 2.24
142 143 6.149474 TGAGAACCTACTGTACCGTTACTTAC 59.851 42.308 0.00 0.00 0.00 2.34
143 144 5.416013 AGAACCTACTGTACCGTTACTTACC 59.584 44.000 0.00 0.00 0.00 2.85
144 145 4.923415 ACCTACTGTACCGTTACTTACCT 58.077 43.478 0.00 0.00 0.00 3.08
145 146 4.944317 ACCTACTGTACCGTTACTTACCTC 59.056 45.833 0.00 0.00 0.00 3.85
146 147 5.189180 CCTACTGTACCGTTACTTACCTCT 58.811 45.833 0.00 0.00 0.00 3.69
147 148 5.295540 CCTACTGTACCGTTACTTACCTCTC 59.704 48.000 0.00 0.00 0.00 3.20
148 149 4.013050 ACTGTACCGTTACTTACCTCTCC 58.987 47.826 0.00 0.00 0.00 3.71
149 150 4.263683 ACTGTACCGTTACTTACCTCTCCT 60.264 45.833 0.00 0.00 0.00 3.69
150 151 4.012374 TGTACCGTTACTTACCTCTCCTG 58.988 47.826 0.00 0.00 0.00 3.86
151 152 3.166560 ACCGTTACTTACCTCTCCTGT 57.833 47.619 0.00 0.00 0.00 4.00
152 153 2.824341 ACCGTTACTTACCTCTCCTGTG 59.176 50.000 0.00 0.00 0.00 3.66
153 154 2.165845 CCGTTACTTACCTCTCCTGTGG 59.834 54.545 0.00 0.00 0.00 4.17
154 155 2.824341 CGTTACTTACCTCTCCTGTGGT 59.176 50.000 0.00 0.00 42.12 4.16
155 156 3.257624 CGTTACTTACCTCTCCTGTGGTT 59.742 47.826 0.00 0.00 40.21 3.67
156 157 4.262335 CGTTACTTACCTCTCCTGTGGTTT 60.262 45.833 0.00 0.00 40.21 3.27
157 158 3.771577 ACTTACCTCTCCTGTGGTTTG 57.228 47.619 0.00 0.00 40.21 2.93
158 159 2.372172 ACTTACCTCTCCTGTGGTTTGG 59.628 50.000 0.00 0.00 40.21 3.28
159 160 2.409064 TACCTCTCCTGTGGTTTGGA 57.591 50.000 0.00 0.00 40.21 3.53
167 168 4.935352 TCCTGTGGTTTGGAGAAATTTG 57.065 40.909 0.00 0.00 0.00 2.32
168 169 4.285863 TCCTGTGGTTTGGAGAAATTTGT 58.714 39.130 0.00 0.00 0.00 2.83
169 170 5.450453 TCCTGTGGTTTGGAGAAATTTGTA 58.550 37.500 0.00 0.00 0.00 2.41
170 171 5.534654 TCCTGTGGTTTGGAGAAATTTGTAG 59.465 40.000 0.00 0.00 0.00 2.74
171 172 5.301805 CCTGTGGTTTGGAGAAATTTGTAGT 59.698 40.000 0.00 0.00 0.00 2.73
172 173 6.488683 CCTGTGGTTTGGAGAAATTTGTAGTA 59.511 38.462 0.00 0.00 0.00 1.82
173 174 7.013846 CCTGTGGTTTGGAGAAATTTGTAGTAA 59.986 37.037 0.00 0.00 0.00 2.24
174 175 8.472007 TGTGGTTTGGAGAAATTTGTAGTAAT 57.528 30.769 0.00 0.00 0.00 1.89
175 176 8.919145 TGTGGTTTGGAGAAATTTGTAGTAATT 58.081 29.630 0.00 0.00 0.00 1.40
176 177 9.758651 GTGGTTTGGAGAAATTTGTAGTAATTT 57.241 29.630 0.00 0.00 39.68 1.82
259 260 8.752005 TTTTTCTATCCTCCACATTTCATAGG 57.248 34.615 0.00 0.00 0.00 2.57
260 261 7.690454 TTTCTATCCTCCACATTTCATAGGA 57.310 36.000 0.00 0.00 40.50 2.94
261 262 7.690454 TTCTATCCTCCACATTTCATAGGAA 57.310 36.000 0.00 0.00 39.68 3.36
262 263 7.690454 TCTATCCTCCACATTTCATAGGAAA 57.310 36.000 4.85 4.85 46.36 3.13
263 264 8.101309 TCTATCCTCCACATTTCATAGGAAAA 57.899 34.615 6.65 0.00 45.52 2.29
264 265 7.993183 TCTATCCTCCACATTTCATAGGAAAAC 59.007 37.037 6.65 0.00 45.52 2.43
265 266 5.886609 TCCTCCACATTTCATAGGAAAACA 58.113 37.500 6.65 0.00 45.52 2.83
266 267 6.310941 TCCTCCACATTTCATAGGAAAACAA 58.689 36.000 6.65 0.00 45.52 2.83
267 268 6.780031 TCCTCCACATTTCATAGGAAAACAAA 59.220 34.615 6.65 0.00 45.52 2.83
268 269 7.454380 TCCTCCACATTTCATAGGAAAACAAAT 59.546 33.333 6.65 0.00 45.52 2.32
269 270 8.748412 CCTCCACATTTCATAGGAAAACAAATA 58.252 33.333 6.65 0.00 45.52 1.40
308 309 8.408043 AAAAGTCTATGATGTGAACCAAATGA 57.592 30.769 0.00 0.00 0.00 2.57
309 310 6.992063 AGTCTATGATGTGAACCAAATGAC 57.008 37.500 0.00 0.00 0.00 3.06
310 311 6.475504 AGTCTATGATGTGAACCAAATGACA 58.524 36.000 0.00 0.00 0.00 3.58
311 312 7.114754 AGTCTATGATGTGAACCAAATGACAT 58.885 34.615 0.00 0.00 0.00 3.06
312 313 7.281774 AGTCTATGATGTGAACCAAATGACATC 59.718 37.037 0.00 0.00 43.31 3.06
313 314 7.281774 GTCTATGATGTGAACCAAATGACATCT 59.718 37.037 0.00 0.00 43.38 2.90
314 315 5.885230 TGATGTGAACCAAATGACATCTC 57.115 39.130 0.00 0.00 43.38 2.75
315 316 5.315348 TGATGTGAACCAAATGACATCTCA 58.685 37.500 0.00 2.73 43.38 3.27
316 317 5.769162 TGATGTGAACCAAATGACATCTCAA 59.231 36.000 0.00 0.00 43.38 3.02
317 318 6.434965 TGATGTGAACCAAATGACATCTCAAT 59.565 34.615 0.00 0.00 43.38 2.57
318 319 6.653526 TGTGAACCAAATGACATCTCAATT 57.346 33.333 0.00 0.00 0.00 2.32
319 320 7.053316 TGTGAACCAAATGACATCTCAATTT 57.947 32.000 0.00 0.00 0.00 1.82
320 321 7.147312 TGTGAACCAAATGACATCTCAATTTC 58.853 34.615 0.00 0.00 0.00 2.17
321 322 7.014518 TGTGAACCAAATGACATCTCAATTTCT 59.985 33.333 0.00 0.00 0.00 2.52
322 323 8.514594 GTGAACCAAATGACATCTCAATTTCTA 58.485 33.333 0.00 0.00 0.00 2.10
323 324 9.246670 TGAACCAAATGACATCTCAATTTCTAT 57.753 29.630 0.00 0.00 0.00 1.98
326 327 9.471702 ACCAAATGACATCTCAATTTCTATTCT 57.528 29.630 0.00 0.00 0.00 2.40
354 355 9.979578 AGTCATAGAATTTGAGACATGTATCTC 57.020 33.333 20.42 13.76 44.68 2.75
365 366 6.961360 AGACATGTATCTCATTTCCTACGA 57.039 37.500 0.00 0.00 34.75 3.43
366 367 7.531857 AGACATGTATCTCATTTCCTACGAT 57.468 36.000 0.00 0.00 34.75 3.73
367 368 7.957002 AGACATGTATCTCATTTCCTACGATT 58.043 34.615 0.00 0.00 34.75 3.34
368 369 8.424918 AGACATGTATCTCATTTCCTACGATTT 58.575 33.333 0.00 0.00 34.75 2.17
369 370 9.692749 GACATGTATCTCATTTCCTACGATTTA 57.307 33.333 0.00 0.00 34.09 1.40
399 400 9.713684 ATTCCTATGATTTTTCTACCCAATGAA 57.286 29.630 0.00 0.00 0.00 2.57
400 401 9.540538 TTCCTATGATTTTTCTACCCAATGAAA 57.459 29.630 0.00 0.00 0.00 2.69
401 402 9.189156 TCCTATGATTTTTCTACCCAATGAAAG 57.811 33.333 0.00 0.00 34.29 2.62
402 403 8.416329 CCTATGATTTTTCTACCCAATGAAAGG 58.584 37.037 0.00 0.00 34.29 3.11
403 404 6.036577 TGATTTTTCTACCCAATGAAAGGC 57.963 37.500 0.00 0.00 34.29 4.35
404 405 5.779771 TGATTTTTCTACCCAATGAAAGGCT 59.220 36.000 0.00 0.00 34.29 4.58
405 406 6.269769 TGATTTTTCTACCCAATGAAAGGCTT 59.730 34.615 0.00 0.00 34.29 4.35
406 407 7.453126 TGATTTTTCTACCCAATGAAAGGCTTA 59.547 33.333 0.00 0.00 34.29 3.09
407 408 6.834168 TTTTCTACCCAATGAAAGGCTTAG 57.166 37.500 0.00 0.00 34.29 2.18
408 409 5.772393 TTCTACCCAATGAAAGGCTTAGA 57.228 39.130 0.00 0.00 0.00 2.10
409 410 5.359194 TCTACCCAATGAAAGGCTTAGAG 57.641 43.478 0.00 0.00 0.00 2.43
410 411 4.783227 TCTACCCAATGAAAGGCTTAGAGT 59.217 41.667 0.00 0.00 0.00 3.24
411 412 3.690460 ACCCAATGAAAGGCTTAGAGTG 58.310 45.455 0.00 0.00 0.00 3.51
412 413 3.330701 ACCCAATGAAAGGCTTAGAGTGA 59.669 43.478 0.00 0.00 0.00 3.41
413 414 4.202567 ACCCAATGAAAGGCTTAGAGTGAA 60.203 41.667 0.00 0.00 0.00 3.18
414 415 4.766891 CCCAATGAAAGGCTTAGAGTGAAA 59.233 41.667 0.00 0.00 0.00 2.69
415 416 5.335976 CCCAATGAAAGGCTTAGAGTGAAAC 60.336 44.000 0.00 0.00 0.00 2.78
428 429 0.875059 GTGAAACTCCGGCTCAAAGG 59.125 55.000 0.00 0.00 0.00 3.11
429 430 0.762418 TGAAACTCCGGCTCAAAGGA 59.238 50.000 0.00 0.00 34.93 3.36
430 431 1.142060 TGAAACTCCGGCTCAAAGGAA 59.858 47.619 0.00 0.00 35.90 3.36
431 432 1.807142 GAAACTCCGGCTCAAAGGAAG 59.193 52.381 0.00 0.00 35.90 3.46
432 433 1.056660 AACTCCGGCTCAAAGGAAGA 58.943 50.000 0.00 0.00 35.90 2.87
433 434 1.280457 ACTCCGGCTCAAAGGAAGAT 58.720 50.000 0.00 0.00 35.90 2.40
434 435 1.065854 ACTCCGGCTCAAAGGAAGATG 60.066 52.381 0.00 0.00 35.90 2.90
435 436 1.208052 CTCCGGCTCAAAGGAAGATGA 59.792 52.381 0.00 0.00 35.90 2.92
436 437 1.839994 TCCGGCTCAAAGGAAGATGAT 59.160 47.619 0.00 0.00 32.86 2.45
437 438 1.945394 CCGGCTCAAAGGAAGATGATG 59.055 52.381 0.00 0.00 0.00 3.07
438 439 2.636830 CGGCTCAAAGGAAGATGATGT 58.363 47.619 0.00 0.00 0.00 3.06
439 440 3.012518 CGGCTCAAAGGAAGATGATGTT 58.987 45.455 0.00 0.00 0.00 2.71
440 441 3.181503 CGGCTCAAAGGAAGATGATGTTG 60.182 47.826 0.00 0.00 0.00 3.33
441 442 3.760684 GGCTCAAAGGAAGATGATGTTGT 59.239 43.478 0.00 0.00 0.00 3.32
442 443 4.142513 GGCTCAAAGGAAGATGATGTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
443 444 4.142513 GCTCAAAGGAAGATGATGTTGTCC 60.143 45.833 0.00 0.00 0.00 4.02
444 445 4.002982 TCAAAGGAAGATGATGTTGTCCG 58.997 43.478 0.00 0.00 33.38 4.79
445 446 3.703001 AAGGAAGATGATGTTGTCCGT 57.297 42.857 0.00 0.00 33.38 4.69
446 447 2.977914 AGGAAGATGATGTTGTCCGTG 58.022 47.619 0.00 0.00 33.38 4.94
447 448 1.398390 GGAAGATGATGTTGTCCGTGC 59.602 52.381 0.00 0.00 0.00 5.34
448 449 2.076100 GAAGATGATGTTGTCCGTGCA 58.924 47.619 0.00 0.00 0.00 4.57
449 450 1.442769 AGATGATGTTGTCCGTGCAC 58.557 50.000 6.82 6.82 0.00 4.57
450 451 0.095245 GATGATGTTGTCCGTGCACG 59.905 55.000 31.77 31.77 39.44 5.34
451 452 0.602638 ATGATGTTGTCCGTGCACGT 60.603 50.000 34.81 16.99 37.74 4.49
452 453 1.204062 GATGTTGTCCGTGCACGTG 59.796 57.895 34.81 25.89 37.74 4.49
453 454 1.218875 GATGTTGTCCGTGCACGTGA 61.219 55.000 34.81 27.56 37.74 4.35
454 455 0.812014 ATGTTGTCCGTGCACGTGAA 60.812 50.000 34.81 21.67 37.74 3.18
455 456 1.019805 TGTTGTCCGTGCACGTGAAA 61.020 50.000 34.81 23.84 37.74 2.69
456 457 0.306533 GTTGTCCGTGCACGTGAAAT 59.693 50.000 34.81 0.00 37.74 2.17
457 458 0.306228 TTGTCCGTGCACGTGAAATG 59.694 50.000 34.81 19.96 37.74 2.32
458 459 0.530870 TGTCCGTGCACGTGAAATGA 60.531 50.000 34.81 21.87 37.74 2.57
459 460 0.584396 GTCCGTGCACGTGAAATGAA 59.416 50.000 34.81 9.08 37.74 2.57
460 461 0.584396 TCCGTGCACGTGAAATGAAC 59.416 50.000 34.81 5.85 37.74 3.18
461 462 0.586319 CCGTGCACGTGAAATGAACT 59.414 50.000 34.81 0.00 37.74 3.01
462 463 1.795872 CCGTGCACGTGAAATGAACTA 59.204 47.619 34.81 0.00 37.74 2.24
463 464 2.159841 CCGTGCACGTGAAATGAACTAG 60.160 50.000 34.81 13.14 37.74 2.57
464 465 2.729360 CGTGCACGTGAAATGAACTAGA 59.271 45.455 30.50 0.00 34.11 2.43
465 466 3.183574 CGTGCACGTGAAATGAACTAGAA 59.816 43.478 30.50 0.00 34.11 2.10
466 467 4.664139 CGTGCACGTGAAATGAACTAGAAG 60.664 45.833 30.50 0.00 34.11 2.85
467 468 3.745975 TGCACGTGAAATGAACTAGAAGG 59.254 43.478 22.23 0.00 0.00 3.46
468 469 3.746492 GCACGTGAAATGAACTAGAAGGT 59.254 43.478 22.23 0.00 0.00 3.50
469 470 4.927425 GCACGTGAAATGAACTAGAAGGTA 59.073 41.667 22.23 0.00 0.00 3.08
470 471 5.163982 GCACGTGAAATGAACTAGAAGGTAC 60.164 44.000 22.23 0.00 0.00 3.34
471 472 5.924254 CACGTGAAATGAACTAGAAGGTACA 59.076 40.000 10.90 0.00 0.00 2.90
472 473 6.089551 CACGTGAAATGAACTAGAAGGTACAG 59.910 42.308 10.90 0.00 0.00 2.74
473 474 6.015688 ACGTGAAATGAACTAGAAGGTACAGA 60.016 38.462 0.00 0.00 0.00 3.41
474 475 6.866770 CGTGAAATGAACTAGAAGGTACAGAA 59.133 38.462 0.00 0.00 0.00 3.02
475 476 7.384115 CGTGAAATGAACTAGAAGGTACAGAAA 59.616 37.037 0.00 0.00 0.00 2.52
476 477 9.052759 GTGAAATGAACTAGAAGGTACAGAAAA 57.947 33.333 0.00 0.00 0.00 2.29
477 478 9.793259 TGAAATGAACTAGAAGGTACAGAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
480 481 7.884816 TGAACTAGAAGGTACAGAAAATTCG 57.115 36.000 0.00 0.00 0.00 3.34
481 482 7.439381 TGAACTAGAAGGTACAGAAAATTCGT 58.561 34.615 0.00 0.00 0.00 3.85
482 483 7.384115 TGAACTAGAAGGTACAGAAAATTCGTG 59.616 37.037 0.00 0.00 0.00 4.35
483 484 6.756221 ACTAGAAGGTACAGAAAATTCGTGT 58.244 36.000 0.00 4.50 0.00 4.49
484 485 5.924475 AGAAGGTACAGAAAATTCGTGTG 57.076 39.130 0.00 0.00 0.00 3.82
485 486 5.607477 AGAAGGTACAGAAAATTCGTGTGA 58.393 37.500 0.00 0.00 0.00 3.58
486 487 5.465724 AGAAGGTACAGAAAATTCGTGTGAC 59.534 40.000 0.00 0.00 0.00 3.67
487 488 4.957296 AGGTACAGAAAATTCGTGTGACT 58.043 39.130 0.00 4.63 0.00 3.41
488 489 5.365619 AGGTACAGAAAATTCGTGTGACTT 58.634 37.500 0.00 0.00 0.00 3.01
489 490 5.236478 AGGTACAGAAAATTCGTGTGACTTG 59.764 40.000 0.00 0.00 0.00 3.16
490 491 3.952535 ACAGAAAATTCGTGTGACTTGC 58.047 40.909 0.00 0.00 0.00 4.01
491 492 3.376859 ACAGAAAATTCGTGTGACTTGCA 59.623 39.130 0.00 0.00 0.00 4.08
503 504 4.778842 GTGACTTGCACTACATAATCCG 57.221 45.455 0.00 0.00 44.27 4.18
504 505 4.181578 GTGACTTGCACTACATAATCCGT 58.818 43.478 0.00 0.00 44.27 4.69
505 506 4.267928 GTGACTTGCACTACATAATCCGTC 59.732 45.833 0.00 0.00 44.27 4.79
506 507 4.081917 TGACTTGCACTACATAATCCGTCA 60.082 41.667 0.00 0.00 0.00 4.35
507 508 4.827692 ACTTGCACTACATAATCCGTCAA 58.172 39.130 0.00 0.00 0.00 3.18
508 509 5.428253 ACTTGCACTACATAATCCGTCAAT 58.572 37.500 0.00 0.00 0.00 2.57
509 510 5.523916 ACTTGCACTACATAATCCGTCAATC 59.476 40.000 0.00 0.00 0.00 2.67
510 511 5.276461 TGCACTACATAATCCGTCAATCT 57.724 39.130 0.00 0.00 0.00 2.40
511 512 5.049828 TGCACTACATAATCCGTCAATCTG 58.950 41.667 0.00 0.00 0.00 2.90
512 513 5.163457 TGCACTACATAATCCGTCAATCTGA 60.163 40.000 0.00 0.00 0.00 3.27
513 514 5.753438 GCACTACATAATCCGTCAATCTGAA 59.247 40.000 0.00 0.00 0.00 3.02
514 515 6.292381 GCACTACATAATCCGTCAATCTGAAC 60.292 42.308 0.00 0.00 0.00 3.18
515 516 6.980978 CACTACATAATCCGTCAATCTGAACT 59.019 38.462 0.00 0.00 0.00 3.01
516 517 7.168302 CACTACATAATCCGTCAATCTGAACTC 59.832 40.741 0.00 0.00 0.00 3.01
517 518 5.360591 ACATAATCCGTCAATCTGAACTCC 58.639 41.667 0.00 0.00 0.00 3.85
518 519 3.981071 AATCCGTCAATCTGAACTCCA 57.019 42.857 0.00 0.00 0.00 3.86
519 520 4.494091 AATCCGTCAATCTGAACTCCAT 57.506 40.909 0.00 0.00 0.00 3.41
520 521 3.526931 TCCGTCAATCTGAACTCCATC 57.473 47.619 0.00 0.00 0.00 3.51
521 522 2.159240 TCCGTCAATCTGAACTCCATCG 60.159 50.000 0.00 0.00 0.00 3.84
522 523 2.417379 CCGTCAATCTGAACTCCATCGT 60.417 50.000 0.00 0.00 0.00 3.73
523 524 2.854777 CGTCAATCTGAACTCCATCGTC 59.145 50.000 0.00 0.00 0.00 4.20
524 525 3.428180 CGTCAATCTGAACTCCATCGTCT 60.428 47.826 0.00 0.00 0.00 4.18
525 526 3.862267 GTCAATCTGAACTCCATCGTCTG 59.138 47.826 0.00 0.00 0.00 3.51
539 540 5.401033 CATCGTCTGGATTTCAAGTCATC 57.599 43.478 0.00 0.00 31.28 2.92
540 541 4.535526 TCGTCTGGATTTCAAGTCATCA 57.464 40.909 0.00 0.00 0.00 3.07
541 542 4.245660 TCGTCTGGATTTCAAGTCATCAC 58.754 43.478 0.00 0.00 0.00 3.06
542 543 4.021104 TCGTCTGGATTTCAAGTCATCACT 60.021 41.667 0.00 0.00 0.00 3.41
543 544 4.692625 CGTCTGGATTTCAAGTCATCACTT 59.307 41.667 0.00 0.00 44.26 3.16
544 545 5.163913 CGTCTGGATTTCAAGTCATCACTTC 60.164 44.000 0.00 0.00 41.24 3.01
545 546 5.936956 GTCTGGATTTCAAGTCATCACTTCT 59.063 40.000 0.00 0.00 41.24 2.85
546 547 5.936372 TCTGGATTTCAAGTCATCACTTCTG 59.064 40.000 0.00 0.00 41.24 3.02
547 548 5.868454 TGGATTTCAAGTCATCACTTCTGA 58.132 37.500 0.00 0.00 41.24 3.27
548 549 6.479006 TGGATTTCAAGTCATCACTTCTGAT 58.521 36.000 0.00 0.00 41.24 2.90
558 559 4.834234 CATCACTTCTGATGCTCGAATTG 58.166 43.478 0.00 0.00 45.74 2.32
559 560 3.264947 TCACTTCTGATGCTCGAATTGG 58.735 45.455 0.00 0.00 0.00 3.16
560 561 3.005554 CACTTCTGATGCTCGAATTGGT 58.994 45.455 0.00 0.00 0.00 3.67
561 562 3.063180 CACTTCTGATGCTCGAATTGGTC 59.937 47.826 0.00 0.00 0.00 4.02
562 563 3.264947 CTTCTGATGCTCGAATTGGTCA 58.735 45.455 0.00 0.00 0.00 4.02
563 564 3.548745 TCTGATGCTCGAATTGGTCAT 57.451 42.857 0.00 0.00 0.00 3.06
564 565 3.461061 TCTGATGCTCGAATTGGTCATC 58.539 45.455 13.84 13.84 35.40 2.92
565 566 3.118665 TCTGATGCTCGAATTGGTCATCA 60.119 43.478 18.61 18.61 40.56 3.07
566 567 3.812262 TGATGCTCGAATTGGTCATCAT 58.188 40.909 17.06 5.63 38.70 2.45
567 568 3.811497 TGATGCTCGAATTGGTCATCATC 59.189 43.478 17.06 11.93 38.70 2.92
568 569 2.564771 TGCTCGAATTGGTCATCATCC 58.435 47.619 0.00 0.00 0.00 3.51
569 570 1.528586 GCTCGAATTGGTCATCATCCG 59.471 52.381 0.00 0.00 0.00 4.18
570 571 2.138320 CTCGAATTGGTCATCATCCGG 58.862 52.381 0.00 0.00 0.00 5.14
571 572 0.588252 CGAATTGGTCATCATCCGGC 59.412 55.000 0.00 0.00 0.00 6.13
572 573 1.811558 CGAATTGGTCATCATCCGGCT 60.812 52.381 0.00 0.00 0.00 5.52
573 574 1.605710 GAATTGGTCATCATCCGGCTG 59.394 52.381 0.00 0.00 0.00 4.85
574 575 0.820891 ATTGGTCATCATCCGGCTGC 60.821 55.000 0.00 0.00 0.00 5.25
575 576 1.913951 TTGGTCATCATCCGGCTGCT 61.914 55.000 0.00 0.00 0.00 4.24
576 577 1.596477 GGTCATCATCCGGCTGCTC 60.596 63.158 0.00 0.00 0.00 4.26
577 578 1.445095 GTCATCATCCGGCTGCTCT 59.555 57.895 0.00 0.00 0.00 4.09
578 579 0.179062 GTCATCATCCGGCTGCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
579 580 0.543277 TCATCATCCGGCTGCTCTTT 59.457 50.000 0.00 0.00 0.00 2.52
580 581 0.661552 CATCATCCGGCTGCTCTTTG 59.338 55.000 0.00 0.00 0.00 2.77
581 582 1.099879 ATCATCCGGCTGCTCTTTGC 61.100 55.000 0.00 0.00 43.25 3.68
582 583 1.748122 CATCCGGCTGCTCTTTGCT 60.748 57.895 0.00 0.00 43.37 3.91
583 584 1.451028 ATCCGGCTGCTCTTTGCTC 60.451 57.895 0.00 0.00 43.37 4.26
584 585 1.908340 ATCCGGCTGCTCTTTGCTCT 61.908 55.000 0.00 0.00 43.37 4.09
585 586 2.396955 CCGGCTGCTCTTTGCTCTG 61.397 63.158 0.00 0.00 43.37 3.35
586 587 2.396955 CGGCTGCTCTTTGCTCTGG 61.397 63.158 0.00 0.00 43.37 3.86
587 588 1.303155 GGCTGCTCTTTGCTCTGGT 60.303 57.895 0.00 0.00 43.37 4.00
588 589 1.584380 GGCTGCTCTTTGCTCTGGTG 61.584 60.000 0.00 0.00 43.37 4.17
589 590 0.888285 GCTGCTCTTTGCTCTGGTGT 60.888 55.000 0.00 0.00 43.37 4.16
590 591 1.155042 CTGCTCTTTGCTCTGGTGTC 58.845 55.000 0.00 0.00 43.37 3.67
591 592 0.250467 TGCTCTTTGCTCTGGTGTCC 60.250 55.000 0.00 0.00 43.37 4.02
592 593 0.957888 GCTCTTTGCTCTGGTGTCCC 60.958 60.000 0.00 0.00 38.95 4.46
593 594 0.397941 CTCTTTGCTCTGGTGTCCCA 59.602 55.000 0.00 0.00 38.87 4.37
601 602 3.920817 TGGTGTCCCAGCAAGGAT 58.079 55.556 0.00 0.00 38.96 3.24
602 603 1.379916 TGGTGTCCCAGCAAGGATG 59.620 57.895 0.00 0.00 38.96 3.51
621 622 9.836076 CAAGGATGCACAAATATATATGAACAG 57.164 33.333 0.00 0.00 0.00 3.16
622 623 8.571461 AGGATGCACAAATATATATGAACAGG 57.429 34.615 0.00 0.00 0.00 4.00
623 624 8.385491 AGGATGCACAAATATATATGAACAGGA 58.615 33.333 0.00 0.00 0.00 3.86
624 625 9.182214 GGATGCACAAATATATATGAACAGGAT 57.818 33.333 0.00 0.00 0.00 3.24
627 628 9.571816 TGCACAAATATATATGAACAGGATTGA 57.428 29.630 0.00 0.00 0.00 2.57
639 640 8.674263 ATGAACAGGATTGATAAATCTCAGTC 57.326 34.615 2.71 0.00 32.70 3.51
640 641 6.758416 TGAACAGGATTGATAAATCTCAGTCG 59.242 38.462 2.71 0.00 33.88 4.18
641 642 6.471233 ACAGGATTGATAAATCTCAGTCGA 57.529 37.500 2.71 0.00 33.88 4.20
642 643 6.276847 ACAGGATTGATAAATCTCAGTCGAC 58.723 40.000 7.70 7.70 33.88 4.20
643 644 5.694006 CAGGATTGATAAATCTCAGTCGACC 59.306 44.000 13.01 0.00 33.88 4.79
644 645 4.681942 GGATTGATAAATCTCAGTCGACCG 59.318 45.833 13.01 1.05 33.88 4.79
645 646 4.976224 TTGATAAATCTCAGTCGACCGA 57.024 40.909 13.01 6.63 0.00 4.69
646 647 4.553756 TGATAAATCTCAGTCGACCGAG 57.446 45.455 20.59 20.59 0.00 4.63
647 648 4.196971 TGATAAATCTCAGTCGACCGAGA 58.803 43.478 28.64 28.64 42.25 4.04
653 654 4.352600 TCTCAGTCGACCGAGATTTAAC 57.647 45.455 24.28 0.00 33.37 2.01
654 655 4.008330 TCTCAGTCGACCGAGATTTAACT 58.992 43.478 24.28 0.00 33.37 2.24
655 656 5.181009 TCTCAGTCGACCGAGATTTAACTA 58.819 41.667 24.28 3.28 33.37 2.24
656 657 5.645067 TCTCAGTCGACCGAGATTTAACTAA 59.355 40.000 24.28 2.61 33.37 2.24
657 658 5.877031 TCAGTCGACCGAGATTTAACTAAG 58.123 41.667 13.01 0.00 0.00 2.18
658 659 5.413833 TCAGTCGACCGAGATTTAACTAAGT 59.586 40.000 13.01 0.00 0.00 2.24
659 660 5.512082 CAGTCGACCGAGATTTAACTAAGTG 59.488 44.000 13.01 0.00 0.00 3.16
705 707 0.597072 GTCGATCATACGGAGGGGAC 59.403 60.000 0.00 0.00 0.00 4.46
737 739 1.270358 CCCTAGCGACCCTAAGCAATC 60.270 57.143 0.00 0.00 35.48 2.67
817 819 0.247537 CGCTTGTTTAATCGCCGTCC 60.248 55.000 0.00 0.00 0.00 4.79
823 825 2.300850 TTTAATCGCCGTCCTCCCCG 62.301 60.000 0.00 0.00 0.00 5.73
883 885 1.383523 GCTGTGCCCAAGAATACCTC 58.616 55.000 0.00 0.00 0.00 3.85
905 907 3.181516 CGCCAAATCACAGAAGCTTAGTC 60.182 47.826 0.00 0.00 0.00 2.59
928 953 7.342026 AGTCCATACAGAGACATTACATACACA 59.658 37.037 0.00 0.00 35.38 3.72
929 954 7.435488 GTCCATACAGAGACATTACATACACAC 59.565 40.741 0.00 0.00 33.08 3.82
930 955 6.417930 CCATACAGAGACATTACATACACACG 59.582 42.308 0.00 0.00 0.00 4.49
931 956 5.386958 ACAGAGACATTACATACACACGT 57.613 39.130 0.00 0.00 0.00 4.49
1045 1085 0.388134 GTTCTGCTACGACGGCTTCA 60.388 55.000 0.00 0.00 0.00 3.02
1049 1089 2.577785 GCTACGACGGCTTCATCGC 61.578 63.158 0.00 0.00 42.12 4.58
1494 1558 1.916697 GCTCGGAGCAAGAAAGCACC 61.917 60.000 24.42 0.00 41.89 5.01
1509 1573 1.494721 AGCACCACTCTTCCCAAGAAA 59.505 47.619 0.00 0.00 37.02 2.52
1533 1597 3.564027 GGCGGCGACAGGAAATCG 61.564 66.667 12.98 0.00 42.55 3.34
1537 1601 3.573558 GCGACAGGAAATCGGCAA 58.426 55.556 0.00 0.00 39.99 4.52
1538 1602 1.134694 GCGACAGGAAATCGGCAAC 59.865 57.895 0.00 0.00 39.99 4.17
1582 1646 2.429930 CCAGTTCGGCCAAGGACA 59.570 61.111 2.24 0.00 0.00 4.02
1587 1651 0.951040 GTTCGGCCAAGGACACTCAG 60.951 60.000 2.24 0.00 0.00 3.35
1647 1711 3.541632 GAACCATCGCAATTAAGGGAGA 58.458 45.455 0.00 0.00 33.76 3.71
1648 1712 3.199880 ACCATCGCAATTAAGGGAGAG 57.800 47.619 0.00 0.00 33.76 3.20
1690 1754 6.483640 AGTGAACTGACAAGGTTTACTGAATC 59.516 38.462 4.75 0.00 40.36 2.52
1850 1914 4.565564 CCAGCTTACGGTACAGACATTAAC 59.434 45.833 0.00 0.00 0.00 2.01
1861 1925 4.585879 ACAGACATTAACCGGTTTAGCAT 58.414 39.130 27.64 10.02 0.00 3.79
1876 1940 1.732941 AGCATTGTGAATTCGGCGTA 58.267 45.000 6.85 0.00 0.00 4.42
1877 1941 1.396996 AGCATTGTGAATTCGGCGTAC 59.603 47.619 6.85 0.55 0.00 3.67
1882 1946 0.457337 GTGAATTCGGCGTACTCGGT 60.457 55.000 6.85 0.00 37.56 4.69
2194 2271 2.686405 TGTACTCACCATAGTAGCCACG 59.314 50.000 0.00 0.00 32.69 4.94
2212 2289 5.186409 AGCCACGGTAAACTCTACTAATTGA 59.814 40.000 0.00 0.00 0.00 2.57
2227 2304 4.873827 ACTAATTGATTAATGACGCCGTGT 59.126 37.500 0.00 0.00 0.00 4.49
2288 2365 6.365247 GCACTTCATCGTCACTAGTTTCTTTA 59.635 38.462 0.00 0.00 0.00 1.85
2292 2369 9.798885 CTTCATCGTCACTAGTTTCTTTAAAAG 57.201 33.333 0.00 0.00 0.00 2.27
2442 2527 6.644181 CCACATAATCTACTACTGTCATGCTG 59.356 42.308 0.00 0.00 0.00 4.41
2532 2624 0.104855 ACGCTGCGATGACCACATAT 59.895 50.000 30.47 0.00 36.82 1.78
2556 2648 6.655930 TGGATTAATTTCGTAGCCCTAAAGT 58.344 36.000 0.00 0.00 0.00 2.66
2606 2820 8.245701 TGGTTTGTTAAAAACACACTCATTTC 57.754 30.769 8.48 0.00 38.07 2.17
2673 2955 6.321181 TGAATTTGACCCTTAGATTATGGTGC 59.679 38.462 0.00 0.00 0.00 5.01
2693 2975 5.229423 GTGCATAACATCAAACATGTGGTT 58.771 37.500 0.00 2.43 42.98 3.67
2694 2976 5.345741 GTGCATAACATCAAACATGTGGTTC 59.654 40.000 0.00 0.00 39.29 3.62
2695 2977 4.558470 GCATAACATCAAACATGTGGTTCG 59.442 41.667 0.00 0.00 39.29 3.95
2696 2978 5.618863 GCATAACATCAAACATGTGGTTCGA 60.619 40.000 0.00 0.00 39.29 3.71
2697 2979 6.554419 CATAACATCAAACATGTGGTTCGAT 58.446 36.000 0.00 0.00 39.29 3.59
2698 2980 4.424061 ACATCAAACATGTGGTTCGATG 57.576 40.909 0.00 9.93 39.29 3.84
2699 2981 3.191162 ACATCAAACATGTGGTTCGATGG 59.809 43.478 19.10 8.36 39.29 3.51
2700 2982 2.857483 TCAAACATGTGGTTCGATGGT 58.143 42.857 0.00 0.00 39.29 3.55
2717 2999 3.604875 TGGTTCGATGGTTAGGAGAAC 57.395 47.619 0.00 0.00 40.09 3.01
2723 3005 2.633488 GATGGTTAGGAGAACAGTGGC 58.367 52.381 0.00 0.00 0.00 5.01
2726 3008 2.375174 TGGTTAGGAGAACAGTGGCATT 59.625 45.455 0.00 0.00 0.00 3.56
2749 3031 2.027561 CCATCCAACGAGGGTTCAAGTA 60.028 50.000 0.00 0.00 35.12 2.24
2761 3043 4.217983 AGGGTTCAAGTACTAGTCTTGACG 59.782 45.833 24.88 9.35 46.88 4.35
2790 3072 6.020360 GTGCTCGCATTTTTCTGGATTTATTC 60.020 38.462 0.00 0.00 0.00 1.75
2842 3124 1.090052 GGCATGTTCCCGCTGACTAC 61.090 60.000 0.00 0.00 0.00 2.73
2843 3125 0.391130 GCATGTTCCCGCTGACTACA 60.391 55.000 0.00 0.00 0.00 2.74
2851 3133 0.796312 CCGCTGACTACAAATGCGTT 59.204 50.000 0.00 0.00 44.32 4.84
2857 3139 4.142687 GCTGACTACAAATGCGTTTATGGT 60.143 41.667 3.00 0.13 0.00 3.55
2882 3164 6.073058 TGACTTCGTCAATCTCAAAAAGATGG 60.073 38.462 0.00 0.00 44.26 3.51
2907 3190 1.135053 GCTCAGTCTTTCGGGGTACTC 60.135 57.143 0.00 0.00 0.00 2.59
2908 3191 2.168496 CTCAGTCTTTCGGGGTACTCA 58.832 52.381 0.00 0.00 0.00 3.41
2909 3192 2.761208 CTCAGTCTTTCGGGGTACTCAT 59.239 50.000 0.00 0.00 0.00 2.90
2910 3193 2.758979 TCAGTCTTTCGGGGTACTCATC 59.241 50.000 0.00 0.00 0.00 2.92
2914 3197 0.615544 TTTCGGGGTACTCATCGGGT 60.616 55.000 0.00 0.00 0.00 5.28
2915 3198 1.324740 TTCGGGGTACTCATCGGGTG 61.325 60.000 0.00 0.00 0.00 4.61
2917 3200 2.440817 GGGGTACTCATCGGGTGGG 61.441 68.421 0.00 0.00 0.00 4.61
2918 3201 2.440817 GGGTACTCATCGGGTGGGG 61.441 68.421 0.00 0.00 30.22 4.96
2919 3202 2.440817 GGTACTCATCGGGTGGGGG 61.441 68.421 0.00 0.00 30.22 5.40
2940 3223 0.761702 GTAGGGGGCGTTCATAGGGA 60.762 60.000 0.00 0.00 0.00 4.20
2968 3251 3.060272 GTGTGTGCATATGTATGAGCGTC 60.060 47.826 4.29 0.00 35.75 5.19
2970 3253 4.037446 TGTGTGCATATGTATGAGCGTCTA 59.963 41.667 4.29 0.00 35.75 2.59
2974 3257 3.846896 GCATATGTATGAGCGTCTACGTC 59.153 47.826 4.29 1.90 37.50 4.34
2993 3276 9.831737 TCTACGTCTGTACTATGTTAAGAAAAC 57.168 33.333 0.00 0.00 0.00 2.43
2994 3277 9.616634 CTACGTCTGTACTATGTTAAGAAAACA 57.383 33.333 0.00 0.00 34.31 2.83
2996 3279 8.922676 ACGTCTGTACTATGTTAAGAAAACATG 58.077 33.333 12.42 0.00 40.70 3.21
2997 3280 8.380644 CGTCTGTACTATGTTAAGAAAACATGG 58.619 37.037 12.42 11.83 42.50 3.66
2999 3282 9.787435 TCTGTACTATGTTAAGAAAACATGGTT 57.213 29.630 20.15 0.00 45.82 3.67
3001 3284 9.005777 TGTACTATGTTAAGAAAACATGGTTCC 57.994 33.333 20.15 13.67 45.82 3.62
3002 3285 9.005777 GTACTATGTTAAGAAAACATGGTTCCA 57.994 33.333 20.15 5.16 45.82 3.53
3003 3286 7.882179 ACTATGTTAAGAAAACATGGTTCCAC 58.118 34.615 12.37 0.00 45.82 4.02
3004 3287 5.176407 TGTTAAGAAAACATGGTTCCACG 57.824 39.130 0.00 0.00 0.00 4.94
3005 3288 2.793278 AAGAAAACATGGTTCCACGC 57.207 45.000 0.00 0.00 0.00 5.34
3006 3289 0.591170 AGAAAACATGGTTCCACGCG 59.409 50.000 3.53 3.53 0.00 6.01
3007 3290 1.001745 GAAAACATGGTTCCACGCGC 61.002 55.000 5.73 0.00 0.00 6.86
3008 3291 1.729470 AAAACATGGTTCCACGCGCA 61.729 50.000 5.73 0.00 0.00 6.09
3009 3292 2.400896 AAACATGGTTCCACGCGCAC 62.401 55.000 5.73 0.00 0.00 5.34
3010 3293 4.101790 CATGGTTCCACGCGCACC 62.102 66.667 5.73 7.67 0.00 5.01
3015 3298 3.627952 TTCCACGCGCACCCCTTA 61.628 61.111 5.73 0.00 0.00 2.69
3016 3299 3.887335 TTCCACGCGCACCCCTTAC 62.887 63.158 5.73 0.00 0.00 2.34
3017 3300 4.388499 CCACGCGCACCCCTTACT 62.388 66.667 5.73 0.00 0.00 2.24
3018 3301 2.574929 CACGCGCACCCCTTACTA 59.425 61.111 5.73 0.00 0.00 1.82
3019 3302 1.079681 CACGCGCACCCCTTACTAA 60.080 57.895 5.73 0.00 0.00 2.24
3020 3303 0.461339 CACGCGCACCCCTTACTAAT 60.461 55.000 5.73 0.00 0.00 1.73
3021 3304 1.113788 ACGCGCACCCCTTACTAATA 58.886 50.000 5.73 0.00 0.00 0.98
3022 3305 1.068127 ACGCGCACCCCTTACTAATAG 59.932 52.381 5.73 0.00 0.00 1.73
3023 3306 1.068127 CGCGCACCCCTTACTAATAGT 59.932 52.381 8.75 0.00 0.00 2.12
3024 3307 2.294233 CGCGCACCCCTTACTAATAGTA 59.706 50.000 8.75 0.00 0.00 1.82
3025 3308 3.243501 CGCGCACCCCTTACTAATAGTAA 60.244 47.826 8.75 11.85 38.28 2.24
3026 3309 4.696455 GCGCACCCCTTACTAATAGTAAA 58.304 43.478 13.20 0.00 39.89 2.01
3027 3310 5.303165 GCGCACCCCTTACTAATAGTAAAT 58.697 41.667 13.20 0.00 39.89 1.40
3028 3311 5.761726 GCGCACCCCTTACTAATAGTAAATT 59.238 40.000 13.20 0.00 39.89 1.82
3029 3312 6.261603 GCGCACCCCTTACTAATAGTAAATTT 59.738 38.462 13.20 0.00 39.89 1.82
3030 3313 7.442062 GCGCACCCCTTACTAATAGTAAATTTA 59.558 37.037 13.20 0.00 39.89 1.40
3031 3314 9.328845 CGCACCCCTTACTAATAGTAAATTTAA 57.671 33.333 13.20 0.00 39.89 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.055530 GTGCAGATATCCCTCCATAGGTG 60.056 52.174 0.00 0.00 41.89 4.00
10 11 3.177228 GTGCAGATATCCCTCCATAGGT 58.823 50.000 0.00 0.00 41.89 3.08
11 12 2.167281 CGTGCAGATATCCCTCCATAGG 59.833 54.545 0.00 0.00 43.25 2.57
12 13 2.167281 CCGTGCAGATATCCCTCCATAG 59.833 54.545 0.00 0.00 0.00 2.23
13 14 2.179427 CCGTGCAGATATCCCTCCATA 58.821 52.381 0.00 0.00 0.00 2.74
14 15 0.979665 CCGTGCAGATATCCCTCCAT 59.020 55.000 0.00 0.00 0.00 3.41
15 16 0.105709 TCCGTGCAGATATCCCTCCA 60.106 55.000 0.00 0.00 0.00 3.86
16 17 0.318762 GTCCGTGCAGATATCCCTCC 59.681 60.000 0.00 0.00 0.00 4.30
17 18 1.000283 CTGTCCGTGCAGATATCCCTC 60.000 57.143 0.00 0.00 38.70 4.30
18 19 1.043816 CTGTCCGTGCAGATATCCCT 58.956 55.000 0.00 0.00 38.70 4.20
19 20 0.601311 GCTGTCCGTGCAGATATCCC 60.601 60.000 0.00 0.00 38.70 3.85
20 21 0.104855 TGCTGTCCGTGCAGATATCC 59.895 55.000 0.00 0.00 38.70 2.59
21 22 1.212616 GTGCTGTCCGTGCAGATATC 58.787 55.000 7.53 0.00 41.41 1.63
22 23 0.528466 CGTGCTGTCCGTGCAGATAT 60.528 55.000 7.53 0.00 41.41 1.63
23 24 1.153842 CGTGCTGTCCGTGCAGATA 60.154 57.895 7.53 0.00 41.41 1.98
24 25 2.433145 CGTGCTGTCCGTGCAGAT 60.433 61.111 7.53 0.00 41.41 2.90
25 26 4.662961 CCGTGCTGTCCGTGCAGA 62.663 66.667 7.53 0.00 41.41 4.26
26 27 4.969196 ACCGTGCTGTCCGTGCAG 62.969 66.667 0.00 0.00 41.41 4.41
30 31 2.443260 TATTGCACCGTGCTGTCCGT 62.443 55.000 23.52 6.59 45.31 4.69
31 32 1.739929 TATTGCACCGTGCTGTCCG 60.740 57.895 23.52 0.00 45.31 4.79
32 33 0.673644 AGTATTGCACCGTGCTGTCC 60.674 55.000 23.52 9.80 45.31 4.02
33 34 0.443869 CAGTATTGCACCGTGCTGTC 59.556 55.000 23.52 11.56 45.31 3.51
34 35 2.543578 CAGTATTGCACCGTGCTGT 58.456 52.632 23.52 14.31 45.31 4.40
45 46 3.314357 CCCACATGTCATCTGCAGTATTG 59.686 47.826 14.67 10.34 0.00 1.90
46 47 3.054139 ACCCACATGTCATCTGCAGTATT 60.054 43.478 14.67 0.00 0.00 1.89
47 48 2.507058 ACCCACATGTCATCTGCAGTAT 59.493 45.455 14.67 3.15 0.00 2.12
48 49 1.908619 ACCCACATGTCATCTGCAGTA 59.091 47.619 14.67 0.48 0.00 2.74
49 50 0.694771 ACCCACATGTCATCTGCAGT 59.305 50.000 14.67 0.00 0.00 4.40
50 51 1.092348 CACCCACATGTCATCTGCAG 58.908 55.000 7.63 7.63 0.00 4.41
51 52 0.691904 TCACCCACATGTCATCTGCA 59.308 50.000 0.00 0.00 0.00 4.41
52 53 1.376543 CTCACCCACATGTCATCTGC 58.623 55.000 0.00 0.00 0.00 4.26
53 54 2.015588 GCCTCACCCACATGTCATCTG 61.016 57.143 0.00 0.00 0.00 2.90
54 55 0.254178 GCCTCACCCACATGTCATCT 59.746 55.000 0.00 0.00 0.00 2.90
55 56 0.749454 GGCCTCACCCACATGTCATC 60.749 60.000 0.00 0.00 0.00 2.92
56 57 1.304282 GGCCTCACCCACATGTCAT 59.696 57.895 0.00 0.00 0.00 3.06
57 58 2.756400 GGCCTCACCCACATGTCA 59.244 61.111 0.00 0.00 0.00 3.58
66 67 1.377725 CTGTCATGTGGGCCTCACC 60.378 63.158 11.00 2.81 45.48 4.02
67 68 2.042831 GCTGTCATGTGGGCCTCAC 61.043 63.158 11.00 15.24 46.23 3.51
68 69 2.352422 GCTGTCATGTGGGCCTCA 59.648 61.111 11.19 11.19 0.00 3.86
69 70 2.821366 CGCTGTCATGTGGGCCTC 60.821 66.667 4.53 0.49 0.00 4.70
70 71 4.415150 CCGCTGTCATGTGGGCCT 62.415 66.667 4.53 0.00 34.20 5.19
75 76 3.490759 GACGGCCGCTGTCATGTG 61.491 66.667 28.58 0.00 39.36 3.21
76 77 4.002506 TGACGGCCGCTGTCATGT 62.003 61.111 27.67 1.54 43.73 3.21
79 80 4.662961 CAGTGACGGCCGCTGTCA 62.663 66.667 27.67 27.67 45.99 3.58
85 86 2.842394 ATTCTCTGCAGTGACGGCCG 62.842 60.000 26.86 26.86 0.00 6.13
86 87 0.674895 AATTCTCTGCAGTGACGGCC 60.675 55.000 17.70 0.00 0.00 6.13
87 88 1.135859 CAAATTCTCTGCAGTGACGGC 60.136 52.381 17.70 0.00 0.00 5.68
88 89 1.135859 GCAAATTCTCTGCAGTGACGG 60.136 52.381 17.70 8.88 39.69 4.79
89 90 1.532437 TGCAAATTCTCTGCAGTGACG 59.468 47.619 17.70 8.30 44.67 4.35
96 97 0.960364 TCGGGGTGCAAATTCTCTGC 60.960 55.000 0.00 0.00 40.35 4.26
97 98 1.089920 CTCGGGGTGCAAATTCTCTG 58.910 55.000 0.00 0.00 0.00 3.35
98 99 0.693049 ACTCGGGGTGCAAATTCTCT 59.307 50.000 0.00 0.00 0.00 3.10
99 100 0.804989 CACTCGGGGTGCAAATTCTC 59.195 55.000 0.00 0.00 39.22 2.87
100 101 0.400213 TCACTCGGGGTGCAAATTCT 59.600 50.000 2.28 0.00 44.98 2.40
101 102 0.804989 CTCACTCGGGGTGCAAATTC 59.195 55.000 2.28 0.00 44.98 2.17
102 103 0.400213 TCTCACTCGGGGTGCAAATT 59.600 50.000 2.28 0.00 44.98 1.82
103 104 0.400213 TTCTCACTCGGGGTGCAAAT 59.600 50.000 2.28 0.00 44.98 2.32
104 105 0.534203 GTTCTCACTCGGGGTGCAAA 60.534 55.000 2.28 0.00 44.98 3.68
105 106 1.070786 GTTCTCACTCGGGGTGCAA 59.929 57.895 2.28 0.00 44.98 4.08
106 107 2.741092 GTTCTCACTCGGGGTGCA 59.259 61.111 2.28 0.00 44.98 4.57
107 108 1.255667 TAGGTTCTCACTCGGGGTGC 61.256 60.000 2.28 0.00 44.98 5.01
108 109 0.531200 GTAGGTTCTCACTCGGGGTG 59.469 60.000 0.28 0.28 46.60 4.61
109 110 0.408700 AGTAGGTTCTCACTCGGGGT 59.591 55.000 0.00 0.00 0.00 4.95
110 111 0.818296 CAGTAGGTTCTCACTCGGGG 59.182 60.000 0.00 0.00 0.00 5.73
111 112 1.546961 ACAGTAGGTTCTCACTCGGG 58.453 55.000 0.00 0.00 0.00 5.14
112 113 2.422832 GGTACAGTAGGTTCTCACTCGG 59.577 54.545 0.00 0.00 0.00 4.63
113 114 2.095532 CGGTACAGTAGGTTCTCACTCG 59.904 54.545 0.00 0.00 0.00 4.18
114 115 3.080319 ACGGTACAGTAGGTTCTCACTC 58.920 50.000 0.00 0.00 0.00 3.51
115 116 3.151912 ACGGTACAGTAGGTTCTCACT 57.848 47.619 0.00 0.00 0.00 3.41
116 117 3.930634 AACGGTACAGTAGGTTCTCAC 57.069 47.619 0.00 0.00 0.00 3.51
117 118 4.655963 AGTAACGGTACAGTAGGTTCTCA 58.344 43.478 14.15 0.00 32.12 3.27
118 119 5.635417 AAGTAACGGTACAGTAGGTTCTC 57.365 43.478 14.15 0.00 32.12 2.87
119 120 5.416013 GGTAAGTAACGGTACAGTAGGTTCT 59.584 44.000 14.15 0.00 32.12 3.01
120 121 5.416013 AGGTAAGTAACGGTACAGTAGGTTC 59.584 44.000 14.15 0.00 32.12 3.62
121 122 5.325239 AGGTAAGTAACGGTACAGTAGGTT 58.675 41.667 14.15 0.00 32.12 3.50
122 123 4.923415 AGGTAAGTAACGGTACAGTAGGT 58.077 43.478 14.15 0.00 32.12 3.08
123 124 5.189180 AGAGGTAAGTAACGGTACAGTAGG 58.811 45.833 14.15 0.00 32.12 3.18
124 125 5.295540 GGAGAGGTAAGTAACGGTACAGTAG 59.704 48.000 14.15 0.00 32.12 2.57
125 126 5.045578 AGGAGAGGTAAGTAACGGTACAGTA 60.046 44.000 14.15 1.50 32.12 2.74
126 127 4.013050 GGAGAGGTAAGTAACGGTACAGT 58.987 47.826 14.15 2.56 32.12 3.55
127 128 4.096081 CAGGAGAGGTAAGTAACGGTACAG 59.904 50.000 14.15 0.00 32.12 2.74
128 129 4.012374 CAGGAGAGGTAAGTAACGGTACA 58.988 47.826 14.15 0.00 32.12 2.90
129 130 4.013050 ACAGGAGAGGTAAGTAACGGTAC 58.987 47.826 1.22 1.22 0.00 3.34
130 131 4.012374 CACAGGAGAGGTAAGTAACGGTA 58.988 47.826 0.00 0.00 0.00 4.02
131 132 2.824341 CACAGGAGAGGTAAGTAACGGT 59.176 50.000 0.00 0.00 0.00 4.83
132 133 2.165845 CCACAGGAGAGGTAAGTAACGG 59.834 54.545 0.00 0.00 0.00 4.44
133 134 2.824341 ACCACAGGAGAGGTAAGTAACG 59.176 50.000 0.00 0.00 36.92 3.18
134 135 4.886496 AACCACAGGAGAGGTAAGTAAC 57.114 45.455 0.00 0.00 37.78 2.50
135 136 4.041198 CCAAACCACAGGAGAGGTAAGTAA 59.959 45.833 0.00 0.00 37.78 2.24
136 137 3.581332 CCAAACCACAGGAGAGGTAAGTA 59.419 47.826 0.00 0.00 37.78 2.24
137 138 2.372172 CCAAACCACAGGAGAGGTAAGT 59.628 50.000 0.00 0.00 37.78 2.24
138 139 2.637872 TCCAAACCACAGGAGAGGTAAG 59.362 50.000 0.00 0.00 37.78 2.34
139 140 2.696775 TCCAAACCACAGGAGAGGTAA 58.303 47.619 0.00 0.00 37.78 2.85
140 141 2.409064 TCCAAACCACAGGAGAGGTA 57.591 50.000 0.00 0.00 37.78 3.08
141 142 3.257627 TCCAAACCACAGGAGAGGT 57.742 52.632 0.00 0.00 40.72 3.85
146 147 4.285863 ACAAATTTCTCCAAACCACAGGA 58.714 39.130 0.00 0.00 0.00 3.86
147 148 4.670896 ACAAATTTCTCCAAACCACAGG 57.329 40.909 0.00 0.00 0.00 4.00
148 149 6.391227 ACTACAAATTTCTCCAAACCACAG 57.609 37.500 0.00 0.00 0.00 3.66
149 150 7.883391 TTACTACAAATTTCTCCAAACCACA 57.117 32.000 0.00 0.00 0.00 4.17
150 151 9.758651 AAATTACTACAAATTTCTCCAAACCAC 57.241 29.630 0.00 0.00 34.71 4.16
151 152 9.974980 GAAATTACTACAAATTTCTCCAAACCA 57.025 29.630 12.53 0.00 45.83 3.67
234 235 8.556589 TCCTATGAAATGTGGAGGATAGAAAAA 58.443 33.333 0.00 0.00 31.25 1.94
235 236 8.101309 TCCTATGAAATGTGGAGGATAGAAAA 57.899 34.615 0.00 0.00 31.25 2.29
236 237 7.690454 TCCTATGAAATGTGGAGGATAGAAA 57.310 36.000 0.00 0.00 31.25 2.52
237 238 7.690454 TTCCTATGAAATGTGGAGGATAGAA 57.310 36.000 0.00 0.00 36.22 2.10
238 239 7.690454 TTTCCTATGAAATGTGGAGGATAGA 57.310 36.000 0.00 0.00 36.22 1.98
239 240 7.775093 TGTTTTCCTATGAAATGTGGAGGATAG 59.225 37.037 0.00 0.00 40.08 2.08
240 241 7.638444 TGTTTTCCTATGAAATGTGGAGGATA 58.362 34.615 0.00 0.00 40.08 2.59
241 242 6.493166 TGTTTTCCTATGAAATGTGGAGGAT 58.507 36.000 0.00 0.00 40.08 3.24
242 243 5.886609 TGTTTTCCTATGAAATGTGGAGGA 58.113 37.500 0.00 0.00 40.08 3.71
243 244 6.588719 TTGTTTTCCTATGAAATGTGGAGG 57.411 37.500 0.00 0.00 40.08 4.30
282 283 8.859090 TCATTTGGTTCACATCATAGACTTTTT 58.141 29.630 0.00 0.00 0.00 1.94
283 284 8.299570 GTCATTTGGTTCACATCATAGACTTTT 58.700 33.333 0.00 0.00 0.00 2.27
284 285 7.448161 TGTCATTTGGTTCACATCATAGACTTT 59.552 33.333 0.00 0.00 0.00 2.66
285 286 6.942005 TGTCATTTGGTTCACATCATAGACTT 59.058 34.615 0.00 0.00 0.00 3.01
286 287 6.475504 TGTCATTTGGTTCACATCATAGACT 58.524 36.000 0.00 0.00 0.00 3.24
287 288 6.741992 TGTCATTTGGTTCACATCATAGAC 57.258 37.500 0.00 0.00 0.00 2.59
288 289 7.341030 AGATGTCATTTGGTTCACATCATAGA 58.659 34.615 12.21 0.00 45.13 1.98
289 290 7.281549 TGAGATGTCATTTGGTTCACATCATAG 59.718 37.037 12.21 0.00 45.13 2.23
290 291 7.111466 TGAGATGTCATTTGGTTCACATCATA 58.889 34.615 12.21 0.06 45.13 2.15
291 292 5.947566 TGAGATGTCATTTGGTTCACATCAT 59.052 36.000 12.21 0.00 45.13 2.45
292 293 5.315348 TGAGATGTCATTTGGTTCACATCA 58.685 37.500 12.21 0.00 45.13 3.07
293 294 5.885230 TGAGATGTCATTTGGTTCACATC 57.115 39.130 3.21 3.21 43.70 3.06
294 295 6.845758 ATTGAGATGTCATTTGGTTCACAT 57.154 33.333 0.00 0.00 30.85 3.21
295 296 6.653526 AATTGAGATGTCATTTGGTTCACA 57.346 33.333 0.00 0.00 30.85 3.58
296 297 7.373493 AGAAATTGAGATGTCATTTGGTTCAC 58.627 34.615 0.00 0.00 30.85 3.18
297 298 7.528996 AGAAATTGAGATGTCATTTGGTTCA 57.471 32.000 0.00 0.00 30.85 3.18
300 301 9.471702 AGAATAGAAATTGAGATGTCATTTGGT 57.528 29.630 0.00 0.00 30.85 3.67
328 329 9.979578 GAGATACATGTCTCAAATTCTATGACT 57.020 33.333 13.15 0.00 43.27 3.41
341 342 6.971602 TCGTAGGAAATGAGATACATGTCTC 58.028 40.000 0.00 4.42 41.58 3.36
342 343 6.961360 TCGTAGGAAATGAGATACATGTCT 57.039 37.500 0.00 0.00 41.58 3.41
343 344 8.594881 AAATCGTAGGAAATGAGATACATGTC 57.405 34.615 0.00 0.00 41.24 3.06
373 374 9.713684 TTCATTGGGTAGAAAAATCATAGGAAT 57.286 29.630 0.00 0.00 0.00 3.01
374 375 9.540538 TTTCATTGGGTAGAAAAATCATAGGAA 57.459 29.630 0.00 0.00 31.35 3.36
375 376 9.189156 CTTTCATTGGGTAGAAAAATCATAGGA 57.811 33.333 0.00 0.00 33.75 2.94
376 377 8.416329 CCTTTCATTGGGTAGAAAAATCATAGG 58.584 37.037 0.00 0.00 33.75 2.57
377 378 7.922811 GCCTTTCATTGGGTAGAAAAATCATAG 59.077 37.037 0.00 0.00 33.75 2.23
378 379 7.619302 AGCCTTTCATTGGGTAGAAAAATCATA 59.381 33.333 0.00 0.00 33.75 2.15
379 380 6.441604 AGCCTTTCATTGGGTAGAAAAATCAT 59.558 34.615 0.00 0.00 33.75 2.45
380 381 5.779771 AGCCTTTCATTGGGTAGAAAAATCA 59.220 36.000 0.00 0.00 33.75 2.57
381 382 6.286240 AGCCTTTCATTGGGTAGAAAAATC 57.714 37.500 0.00 0.00 33.75 2.17
382 383 6.686484 AAGCCTTTCATTGGGTAGAAAAAT 57.314 33.333 0.00 0.00 33.75 1.82
383 384 7.007723 TCTAAGCCTTTCATTGGGTAGAAAAA 58.992 34.615 0.00 0.00 33.75 1.94
384 385 6.548321 TCTAAGCCTTTCATTGGGTAGAAAA 58.452 36.000 0.00 0.00 33.75 2.29
385 386 6.134535 TCTAAGCCTTTCATTGGGTAGAAA 57.865 37.500 0.00 0.00 34.56 2.52
386 387 5.250774 ACTCTAAGCCTTTCATTGGGTAGAA 59.749 40.000 0.00 0.00 34.56 2.10
387 388 4.783227 ACTCTAAGCCTTTCATTGGGTAGA 59.217 41.667 0.00 0.00 34.56 2.59
388 389 4.878397 CACTCTAAGCCTTTCATTGGGTAG 59.122 45.833 0.00 0.00 34.56 3.18
389 390 4.534500 TCACTCTAAGCCTTTCATTGGGTA 59.466 41.667 0.00 0.00 34.56 3.69
390 391 3.330701 TCACTCTAAGCCTTTCATTGGGT 59.669 43.478 0.00 0.00 36.81 4.51
391 392 3.955471 TCACTCTAAGCCTTTCATTGGG 58.045 45.455 0.00 0.00 0.00 4.12
392 393 5.474876 AGTTTCACTCTAAGCCTTTCATTGG 59.525 40.000 0.00 0.00 0.00 3.16
393 394 6.348868 GGAGTTTCACTCTAAGCCTTTCATTG 60.349 42.308 3.97 0.00 44.46 2.82
394 395 5.707764 GGAGTTTCACTCTAAGCCTTTCATT 59.292 40.000 3.97 0.00 44.46 2.57
395 396 5.249420 GGAGTTTCACTCTAAGCCTTTCAT 58.751 41.667 3.97 0.00 44.46 2.57
396 397 4.642429 GGAGTTTCACTCTAAGCCTTTCA 58.358 43.478 3.97 0.00 44.46 2.69
397 398 3.680458 CGGAGTTTCACTCTAAGCCTTTC 59.320 47.826 3.97 0.00 44.46 2.62
398 399 3.557264 CCGGAGTTTCACTCTAAGCCTTT 60.557 47.826 0.00 0.00 44.46 3.11
399 400 2.028020 CCGGAGTTTCACTCTAAGCCTT 60.028 50.000 0.00 0.00 44.46 4.35
400 401 1.550976 CCGGAGTTTCACTCTAAGCCT 59.449 52.381 0.00 0.00 44.46 4.58
401 402 2.007547 GCCGGAGTTTCACTCTAAGCC 61.008 57.143 5.05 0.00 44.46 4.35
402 403 1.066787 AGCCGGAGTTTCACTCTAAGC 60.067 52.381 5.05 4.96 44.46 3.09
403 404 2.231478 TGAGCCGGAGTTTCACTCTAAG 59.769 50.000 5.05 0.00 44.46 2.18
404 405 2.244695 TGAGCCGGAGTTTCACTCTAA 58.755 47.619 5.05 0.00 44.46 2.10
405 406 1.919240 TGAGCCGGAGTTTCACTCTA 58.081 50.000 5.05 0.00 44.46 2.43
406 407 1.048601 TTGAGCCGGAGTTTCACTCT 58.951 50.000 5.05 0.00 44.46 3.24
407 408 1.801178 CTTTGAGCCGGAGTTTCACTC 59.199 52.381 5.05 0.00 44.32 3.51
408 409 1.543429 CCTTTGAGCCGGAGTTTCACT 60.543 52.381 5.05 0.00 0.00 3.41
409 410 0.875059 CCTTTGAGCCGGAGTTTCAC 59.125 55.000 5.05 0.00 0.00 3.18
410 411 0.762418 TCCTTTGAGCCGGAGTTTCA 59.238 50.000 5.05 0.00 0.00 2.69
411 412 1.807142 CTTCCTTTGAGCCGGAGTTTC 59.193 52.381 5.05 0.00 0.00 2.78
412 413 1.420138 TCTTCCTTTGAGCCGGAGTTT 59.580 47.619 5.05 0.00 0.00 2.66
413 414 1.056660 TCTTCCTTTGAGCCGGAGTT 58.943 50.000 5.05 0.00 0.00 3.01
414 415 1.065854 CATCTTCCTTTGAGCCGGAGT 60.066 52.381 5.05 0.00 0.00 3.85
415 416 1.208052 TCATCTTCCTTTGAGCCGGAG 59.792 52.381 5.05 0.00 0.00 4.63
416 417 1.275666 TCATCTTCCTTTGAGCCGGA 58.724 50.000 5.05 0.00 0.00 5.14
417 418 1.945394 CATCATCTTCCTTTGAGCCGG 59.055 52.381 0.00 0.00 0.00 6.13
418 419 2.636830 ACATCATCTTCCTTTGAGCCG 58.363 47.619 0.00 0.00 0.00 5.52
419 420 3.760684 ACAACATCATCTTCCTTTGAGCC 59.239 43.478 0.00 0.00 0.00 4.70
420 421 4.142513 GGACAACATCATCTTCCTTTGAGC 60.143 45.833 0.00 0.00 0.00 4.26
421 422 4.093998 CGGACAACATCATCTTCCTTTGAG 59.906 45.833 0.00 0.00 0.00 3.02
422 423 4.002982 CGGACAACATCATCTTCCTTTGA 58.997 43.478 0.00 0.00 0.00 2.69
423 424 3.753272 ACGGACAACATCATCTTCCTTTG 59.247 43.478 0.00 0.00 0.00 2.77
424 425 3.753272 CACGGACAACATCATCTTCCTTT 59.247 43.478 0.00 0.00 0.00 3.11
425 426 3.338249 CACGGACAACATCATCTTCCTT 58.662 45.455 0.00 0.00 0.00 3.36
426 427 2.936993 GCACGGACAACATCATCTTCCT 60.937 50.000 0.00 0.00 0.00 3.36
427 428 1.398390 GCACGGACAACATCATCTTCC 59.602 52.381 0.00 0.00 0.00 3.46
428 429 2.076100 TGCACGGACAACATCATCTTC 58.924 47.619 0.00 0.00 0.00 2.87
429 430 1.806542 GTGCACGGACAACATCATCTT 59.193 47.619 0.00 0.00 0.00 2.40
430 431 1.442769 GTGCACGGACAACATCATCT 58.557 50.000 0.00 0.00 0.00 2.90
431 432 0.095245 CGTGCACGGACAACATCATC 59.905 55.000 31.15 0.00 35.37 2.92
432 433 0.602638 ACGTGCACGGACAACATCAT 60.603 50.000 39.21 14.73 44.95 2.45
433 434 1.227409 ACGTGCACGGACAACATCA 60.227 52.632 39.21 0.00 44.95 3.07
434 435 1.204062 CACGTGCACGGACAACATC 59.796 57.895 39.21 0.00 44.95 3.06
435 436 0.812014 TTCACGTGCACGGACAACAT 60.812 50.000 39.21 17.03 44.95 2.71
436 437 1.019805 TTTCACGTGCACGGACAACA 61.020 50.000 39.21 17.62 44.95 3.33
437 438 0.306533 ATTTCACGTGCACGGACAAC 59.693 50.000 39.21 0.52 44.95 3.32
438 439 0.306228 CATTTCACGTGCACGGACAA 59.694 50.000 39.21 27.70 44.95 3.18
439 440 0.530870 TCATTTCACGTGCACGGACA 60.531 50.000 39.21 26.24 44.95 4.02
440 441 0.584396 TTCATTTCACGTGCACGGAC 59.416 50.000 39.21 2.62 44.95 4.79
441 442 0.584396 GTTCATTTCACGTGCACGGA 59.416 50.000 39.21 29.67 44.95 4.69
442 443 0.586319 AGTTCATTTCACGTGCACGG 59.414 50.000 39.21 28.05 44.95 4.94
443 444 2.729360 TCTAGTTCATTTCACGTGCACG 59.271 45.455 35.99 35.99 46.33 5.34
444 445 4.377431 CCTTCTAGTTCATTTCACGTGCAC 60.377 45.833 11.67 6.82 0.00 4.57
445 446 3.745975 CCTTCTAGTTCATTTCACGTGCA 59.254 43.478 11.67 0.00 0.00 4.57
446 447 3.746492 ACCTTCTAGTTCATTTCACGTGC 59.254 43.478 11.67 0.00 0.00 5.34
447 448 5.924254 TGTACCTTCTAGTTCATTTCACGTG 59.076 40.000 9.94 9.94 0.00 4.49
448 449 6.015688 TCTGTACCTTCTAGTTCATTTCACGT 60.016 38.462 0.00 0.00 0.00 4.49
449 450 6.387465 TCTGTACCTTCTAGTTCATTTCACG 58.613 40.000 0.00 0.00 0.00 4.35
450 451 8.603242 TTTCTGTACCTTCTAGTTCATTTCAC 57.397 34.615 0.00 0.00 0.00 3.18
451 452 9.793259 ATTTTCTGTACCTTCTAGTTCATTTCA 57.207 29.630 0.00 0.00 0.00 2.69
454 455 8.936864 CGAATTTTCTGTACCTTCTAGTTCATT 58.063 33.333 0.00 0.00 0.00 2.57
455 456 8.095169 ACGAATTTTCTGTACCTTCTAGTTCAT 58.905 33.333 0.00 0.00 0.00 2.57
456 457 7.384115 CACGAATTTTCTGTACCTTCTAGTTCA 59.616 37.037 0.00 0.00 0.00 3.18
457 458 7.384387 ACACGAATTTTCTGTACCTTCTAGTTC 59.616 37.037 0.00 0.00 0.00 3.01
458 459 7.170998 CACACGAATTTTCTGTACCTTCTAGTT 59.829 37.037 0.00 0.00 0.00 2.24
459 460 6.645415 CACACGAATTTTCTGTACCTTCTAGT 59.355 38.462 0.00 0.00 0.00 2.57
460 461 6.866770 TCACACGAATTTTCTGTACCTTCTAG 59.133 38.462 0.00 0.00 0.00 2.43
461 462 6.643770 GTCACACGAATTTTCTGTACCTTCTA 59.356 38.462 0.00 0.00 0.00 2.10
462 463 5.465724 GTCACACGAATTTTCTGTACCTTCT 59.534 40.000 0.00 0.00 0.00 2.85
463 464 5.465724 AGTCACACGAATTTTCTGTACCTTC 59.534 40.000 0.00 0.00 0.00 3.46
464 465 5.365619 AGTCACACGAATTTTCTGTACCTT 58.634 37.500 0.00 0.00 0.00 3.50
465 466 4.957296 AGTCACACGAATTTTCTGTACCT 58.043 39.130 0.00 0.00 0.00 3.08
466 467 5.440685 CAAGTCACACGAATTTTCTGTACC 58.559 41.667 0.00 0.00 0.00 3.34
467 468 4.904154 GCAAGTCACACGAATTTTCTGTAC 59.096 41.667 0.00 0.00 0.00 2.90
468 469 4.572795 TGCAAGTCACACGAATTTTCTGTA 59.427 37.500 0.00 0.00 0.00 2.74
469 470 3.376859 TGCAAGTCACACGAATTTTCTGT 59.623 39.130 0.00 0.00 0.00 3.41
470 471 3.725740 GTGCAAGTCACACGAATTTTCTG 59.274 43.478 0.00 0.00 44.98 3.02
471 472 3.952535 GTGCAAGTCACACGAATTTTCT 58.047 40.909 0.00 0.00 44.98 2.52
482 483 4.181578 ACGGATTATGTAGTGCAAGTCAC 58.818 43.478 0.00 0.00 45.98 3.67
483 484 4.081917 TGACGGATTATGTAGTGCAAGTCA 60.082 41.667 0.00 0.00 33.28 3.41
484 485 4.430007 TGACGGATTATGTAGTGCAAGTC 58.570 43.478 0.00 0.00 0.00 3.01
485 486 4.465632 TGACGGATTATGTAGTGCAAGT 57.534 40.909 0.00 0.00 0.00 3.16
486 487 5.755375 AGATTGACGGATTATGTAGTGCAAG 59.245 40.000 0.00 0.00 0.00 4.01
487 488 5.523552 CAGATTGACGGATTATGTAGTGCAA 59.476 40.000 0.00 0.00 0.00 4.08
488 489 5.049828 CAGATTGACGGATTATGTAGTGCA 58.950 41.667 0.00 0.00 0.00 4.57
489 490 5.289595 TCAGATTGACGGATTATGTAGTGC 58.710 41.667 0.00 0.00 0.00 4.40
490 491 6.980978 AGTTCAGATTGACGGATTATGTAGTG 59.019 38.462 0.00 0.00 0.00 2.74
491 492 7.113658 AGTTCAGATTGACGGATTATGTAGT 57.886 36.000 0.00 0.00 0.00 2.73
492 493 6.642950 GGAGTTCAGATTGACGGATTATGTAG 59.357 42.308 0.00 0.00 0.00 2.74
493 494 6.097696 TGGAGTTCAGATTGACGGATTATGTA 59.902 38.462 0.00 0.00 0.00 2.29
494 495 5.104941 TGGAGTTCAGATTGACGGATTATGT 60.105 40.000 0.00 0.00 0.00 2.29
495 496 5.359756 TGGAGTTCAGATTGACGGATTATG 58.640 41.667 0.00 0.00 0.00 1.90
496 497 5.614324 TGGAGTTCAGATTGACGGATTAT 57.386 39.130 0.00 0.00 0.00 1.28
497 498 5.601662 GATGGAGTTCAGATTGACGGATTA 58.398 41.667 0.00 0.00 0.00 1.75
498 499 3.981071 TGGAGTTCAGATTGACGGATT 57.019 42.857 0.00 0.00 0.00 3.01
499 500 3.491619 CGATGGAGTTCAGATTGACGGAT 60.492 47.826 0.00 0.00 0.00 4.18
500 501 2.159240 CGATGGAGTTCAGATTGACGGA 60.159 50.000 0.00 0.00 0.00 4.69
501 502 2.196749 CGATGGAGTTCAGATTGACGG 58.803 52.381 0.00 0.00 0.00 4.79
502 503 2.854777 GACGATGGAGTTCAGATTGACG 59.145 50.000 0.00 0.00 0.00 4.35
503 504 3.862267 CAGACGATGGAGTTCAGATTGAC 59.138 47.826 0.00 0.00 0.00 3.18
504 505 4.115401 CAGACGATGGAGTTCAGATTGA 57.885 45.455 0.00 0.00 0.00 2.57
517 518 4.872124 TGATGACTTGAAATCCAGACGATG 59.128 41.667 0.00 0.00 0.00 3.84
518 519 4.872691 GTGATGACTTGAAATCCAGACGAT 59.127 41.667 0.00 0.00 0.00 3.73
519 520 4.021104 AGTGATGACTTGAAATCCAGACGA 60.021 41.667 0.00 0.00 0.00 4.20
520 521 4.248859 AGTGATGACTTGAAATCCAGACG 58.751 43.478 0.00 0.00 0.00 4.18
521 522 5.936956 AGAAGTGATGACTTGAAATCCAGAC 59.063 40.000 1.00 0.00 42.80 3.51
522 523 5.936372 CAGAAGTGATGACTTGAAATCCAGA 59.064 40.000 1.00 0.00 42.80 3.86
523 524 5.936372 TCAGAAGTGATGACTTGAAATCCAG 59.064 40.000 1.00 0.00 42.80 3.86
524 525 5.868454 TCAGAAGTGATGACTTGAAATCCA 58.132 37.500 1.00 0.00 42.80 3.41
525 526 6.998968 ATCAGAAGTGATGACTTGAAATCC 57.001 37.500 1.00 0.00 42.80 3.01
537 538 3.875727 CCAATTCGAGCATCAGAAGTGAT 59.124 43.478 7.12 0.00 44.85 3.06
538 539 3.264947 CCAATTCGAGCATCAGAAGTGA 58.735 45.455 7.12 0.00 42.03 3.41
539 540 3.005554 ACCAATTCGAGCATCAGAAGTG 58.994 45.455 0.00 0.00 40.53 3.16
540 541 3.265791 GACCAATTCGAGCATCAGAAGT 58.734 45.455 0.00 0.00 32.88 3.01
541 542 3.264947 TGACCAATTCGAGCATCAGAAG 58.735 45.455 0.00 0.00 32.88 2.85
542 543 3.333029 TGACCAATTCGAGCATCAGAA 57.667 42.857 0.00 0.00 33.62 3.02
543 544 3.118665 TGATGACCAATTCGAGCATCAGA 60.119 43.478 0.00 0.00 40.05 3.27
544 545 3.200483 TGATGACCAATTCGAGCATCAG 58.800 45.455 0.00 0.00 40.05 2.90
545 546 3.264998 TGATGACCAATTCGAGCATCA 57.735 42.857 0.00 0.00 41.96 3.07
546 547 3.188048 GGATGATGACCAATTCGAGCATC 59.812 47.826 0.00 0.00 36.71 3.91
547 548 3.144506 GGATGATGACCAATTCGAGCAT 58.855 45.455 0.00 0.00 0.00 3.79
548 549 2.564771 GGATGATGACCAATTCGAGCA 58.435 47.619 0.00 0.00 0.00 4.26
549 550 1.528586 CGGATGATGACCAATTCGAGC 59.471 52.381 0.00 0.00 0.00 5.03
550 551 2.138320 CCGGATGATGACCAATTCGAG 58.862 52.381 0.00 0.00 0.00 4.04
551 552 1.810031 GCCGGATGATGACCAATTCGA 60.810 52.381 5.05 0.00 0.00 3.71
552 553 0.588252 GCCGGATGATGACCAATTCG 59.412 55.000 5.05 0.00 0.00 3.34
553 554 1.605710 CAGCCGGATGATGACCAATTC 59.394 52.381 16.48 0.00 0.00 2.17
554 555 1.683943 CAGCCGGATGATGACCAATT 58.316 50.000 16.48 0.00 0.00 2.32
555 556 0.820891 GCAGCCGGATGATGACCAAT 60.821 55.000 26.87 0.00 0.00 3.16
556 557 1.451927 GCAGCCGGATGATGACCAA 60.452 57.895 26.87 0.00 0.00 3.67
557 558 2.190313 GCAGCCGGATGATGACCA 59.810 61.111 26.87 0.00 0.00 4.02
558 559 1.596477 GAGCAGCCGGATGATGACC 60.596 63.158 26.87 4.78 0.00 4.02
559 560 0.179062 AAGAGCAGCCGGATGATGAC 60.179 55.000 26.87 6.15 0.00 3.06
560 561 0.543277 AAAGAGCAGCCGGATGATGA 59.457 50.000 26.87 0.00 0.00 2.92
561 562 0.661552 CAAAGAGCAGCCGGATGATG 59.338 55.000 26.87 9.58 0.00 3.07
562 563 1.099879 GCAAAGAGCAGCCGGATGAT 61.100 55.000 26.87 20.12 44.79 2.45
563 564 1.746615 GCAAAGAGCAGCCGGATGA 60.747 57.895 26.87 0.00 44.79 2.92
564 565 2.796651 GCAAAGAGCAGCCGGATG 59.203 61.111 17.26 17.26 44.79 3.51
572 573 3.597002 GGGACACCAGAGCAAAGAGCA 62.597 57.143 0.00 0.00 40.85 4.26
573 574 0.957888 GGGACACCAGAGCAAAGAGC 60.958 60.000 0.00 0.00 39.37 4.09
574 575 0.397941 TGGGACACCAGAGCAAAGAG 59.602 55.000 0.00 0.00 43.37 2.85
575 576 2.538790 TGGGACACCAGAGCAAAGA 58.461 52.632 0.00 0.00 43.37 2.52
584 585 1.379916 CATCCTTGCTGGGACACCA 59.620 57.895 0.56 0.00 46.94 4.17
585 586 2.048603 GCATCCTTGCTGGGACACC 61.049 63.158 0.56 0.00 45.77 4.16
586 587 3.595819 GCATCCTTGCTGGGACAC 58.404 61.111 0.56 0.00 45.77 3.67
595 596 9.836076 CTGTTCATATATATTTGTGCATCCTTG 57.164 33.333 0.00 0.00 0.00 3.61
596 597 9.017509 CCTGTTCATATATATTTGTGCATCCTT 57.982 33.333 0.00 0.00 0.00 3.36
597 598 8.385491 TCCTGTTCATATATATTTGTGCATCCT 58.615 33.333 0.00 0.00 0.00 3.24
598 599 8.565896 TCCTGTTCATATATATTTGTGCATCC 57.434 34.615 0.00 0.00 0.00 3.51
601 602 9.571816 TCAATCCTGTTCATATATATTTGTGCA 57.428 29.630 3.50 0.00 0.00 4.57
613 614 9.770097 GACTGAGATTTATCAATCCTGTTCATA 57.230 33.333 0.00 0.00 39.95 2.15
614 615 7.440556 CGACTGAGATTTATCAATCCTGTTCAT 59.559 37.037 0.00 0.00 39.95 2.57
615 616 6.758416 CGACTGAGATTTATCAATCCTGTTCA 59.242 38.462 0.00 0.00 39.95 3.18
616 617 6.980978 TCGACTGAGATTTATCAATCCTGTTC 59.019 38.462 0.00 0.00 39.95 3.18
617 618 6.758886 GTCGACTGAGATTTATCAATCCTGTT 59.241 38.462 8.70 0.00 39.95 3.16
618 619 6.276847 GTCGACTGAGATTTATCAATCCTGT 58.723 40.000 8.70 0.00 39.95 4.00
619 620 5.694006 GGTCGACTGAGATTTATCAATCCTG 59.306 44.000 16.46 0.00 39.95 3.86
620 621 5.508153 CGGTCGACTGAGATTTATCAATCCT 60.508 44.000 20.01 0.00 39.95 3.24
621 622 4.681942 CGGTCGACTGAGATTTATCAATCC 59.318 45.833 20.01 0.00 39.95 3.01
622 623 5.520632 TCGGTCGACTGAGATTTATCAATC 58.479 41.667 23.11 0.00 39.45 2.67
623 624 5.515797 TCGGTCGACTGAGATTTATCAAT 57.484 39.130 23.11 0.00 0.00 2.57
624 625 4.976224 TCGGTCGACTGAGATTTATCAA 57.024 40.909 23.11 0.00 0.00 2.57
634 635 5.413833 ACTTAGTTAAATCTCGGTCGACTGA 59.586 40.000 25.02 25.02 0.00 3.41
635 636 5.512082 CACTTAGTTAAATCTCGGTCGACTG 59.488 44.000 18.66 18.66 0.00 3.51
636 637 5.182760 ACACTTAGTTAAATCTCGGTCGACT 59.817 40.000 16.46 0.00 0.00 4.18
637 638 5.397326 ACACTTAGTTAAATCTCGGTCGAC 58.603 41.667 7.13 7.13 0.00 4.20
638 639 5.633830 ACACTTAGTTAAATCTCGGTCGA 57.366 39.130 0.00 0.00 0.00 4.20
655 656 9.445878 CAGCATTCCAGATTCATATATACACTT 57.554 33.333 0.00 0.00 0.00 3.16
656 657 8.045507 CCAGCATTCCAGATTCATATATACACT 58.954 37.037 0.00 0.00 0.00 3.55
657 658 8.043113 TCCAGCATTCCAGATTCATATATACAC 58.957 37.037 0.00 0.00 0.00 2.90
658 659 8.149631 TCCAGCATTCCAGATTCATATATACA 57.850 34.615 0.00 0.00 0.00 2.29
659 660 9.270640 GATCCAGCATTCCAGATTCATATATAC 57.729 37.037 0.00 0.00 0.00 1.47
665 666 3.181447 ACGATCCAGCATTCCAGATTCAT 60.181 43.478 0.00 0.00 0.00 2.57
705 707 0.600557 CGCTAGGGAGATACTGGCAG 59.399 60.000 14.16 14.16 41.85 4.85
755 757 3.411446 TGGCCGGATTATAGAAATGCAG 58.589 45.455 5.05 0.00 0.00 4.41
817 819 4.802051 CACATGGCCACCGGGGAG 62.802 72.222 8.16 0.00 40.01 4.30
883 885 2.744202 ACTAAGCTTCTGTGATTTGGCG 59.256 45.455 0.00 0.00 0.00 5.69
905 907 6.417930 CGTGTGTATGTAATGTCTCTGTATGG 59.582 42.308 0.00 0.00 0.00 2.74
928 953 2.014554 CAAGCAGCGACACGTACGT 61.015 57.895 16.72 16.72 0.00 3.57
929 954 1.071019 ATCAAGCAGCGACACGTACG 61.071 55.000 15.01 15.01 0.00 3.67
930 955 1.582502 GTATCAAGCAGCGACACGTAC 59.417 52.381 0.00 0.00 0.00 3.67
931 956 1.200484 TGTATCAAGCAGCGACACGTA 59.800 47.619 0.00 0.00 0.00 3.57
1477 1541 0.884704 GTGGTGCTTTCTTGCTCCGA 60.885 55.000 0.00 0.00 46.19 4.55
1494 1558 2.291741 GCACTGTTTCTTGGGAAGAGTG 59.708 50.000 10.34 10.34 41.56 3.51
1537 1601 1.380650 ACGTTTTGGTGGGCTTGGT 60.381 52.632 0.00 0.00 0.00 3.67
1538 1602 1.362355 GACGTTTTGGTGGGCTTGG 59.638 57.895 0.00 0.00 0.00 3.61
1545 1609 4.676586 GCCGCGGACGTTTTGGTG 62.677 66.667 33.48 0.00 37.70 4.17
1582 1646 2.176314 TTGGCTGCATCGCTCTGAGT 62.176 55.000 6.53 0.00 0.00 3.41
1587 1651 1.153369 TACCTTGGCTGCATCGCTC 60.153 57.895 0.50 0.00 0.00 5.03
1647 1711 3.326006 TCACTGAGAATTGAGGTTGAGCT 59.674 43.478 0.00 0.00 0.00 4.09
1648 1712 3.668447 TCACTGAGAATTGAGGTTGAGC 58.332 45.455 0.00 0.00 0.00 4.26
1731 1795 0.740516 GCTCCTGCAGAACTCTCAGC 60.741 60.000 17.39 6.72 39.41 4.26
1766 1830 1.244019 GGTGACCATGTCCACCTTGC 61.244 60.000 20.36 1.48 33.89 4.01
1850 1914 3.425404 CGAATTCACAATGCTAAACCGG 58.575 45.455 0.00 0.00 0.00 5.28
1861 1925 1.342555 CGAGTACGCCGAATTCACAA 58.657 50.000 6.22 0.00 0.00 3.33
1876 1940 1.201880 GGCTAAGAAACGAGACCGAGT 59.798 52.381 0.00 0.00 39.50 4.18
1877 1941 1.794437 CGGCTAAGAAACGAGACCGAG 60.794 57.143 0.00 0.00 41.61 4.63
1882 1946 0.389426 GTGCCGGCTAAGAAACGAGA 60.389 55.000 29.70 0.00 0.00 4.04
2066 2133 2.882927 TGTAGTGGTGATGTATCGGC 57.117 50.000 0.00 0.00 0.00 5.54
2212 2289 2.097954 TCGAGTACACGGCGTCATTAAT 59.902 45.455 10.85 0.33 0.00 1.40
2222 2299 3.982213 TCGTTGATCGAGTACACGG 57.018 52.632 12.78 0.00 44.01 4.94
2288 2365 4.152647 AGGCGGGATTTTCTCTTTCTTTT 58.847 39.130 0.00 0.00 0.00 2.27
2292 2369 2.680339 CAGAGGCGGGATTTTCTCTTTC 59.320 50.000 0.00 0.00 34.71 2.62
2442 2527 1.480545 ACTTGTTCAACCAGTTTGGCC 59.519 47.619 0.00 0.00 42.67 5.36
2532 2624 6.655930 ACTTTAGGGCTACGAAATTAATCCA 58.344 36.000 0.00 0.00 0.00 3.41
2606 2820 1.522668 TGGGCAGTTTGAGATTGTCG 58.477 50.000 0.00 0.00 0.00 4.35
2648 2930 6.321181 GCACCATAATCTAAGGGTCAAATTCA 59.679 38.462 0.00 0.00 0.00 2.57
2650 2932 6.194235 TGCACCATAATCTAAGGGTCAAATT 58.806 36.000 0.00 0.00 0.00 1.82
2673 2955 5.937187 TCGAACCACATGTTTGATGTTATG 58.063 37.500 0.00 0.00 41.51 1.90
2695 2977 4.120589 GTTCTCCTAACCATCGAACCATC 58.879 47.826 0.00 0.00 0.00 3.51
2696 2978 3.517901 TGTTCTCCTAACCATCGAACCAT 59.482 43.478 0.00 0.00 34.58 3.55
2697 2979 2.901192 TGTTCTCCTAACCATCGAACCA 59.099 45.455 0.00 0.00 34.58 3.67
2698 2980 3.056035 ACTGTTCTCCTAACCATCGAACC 60.056 47.826 0.00 0.00 34.58 3.62
2699 2981 3.927142 CACTGTTCTCCTAACCATCGAAC 59.073 47.826 0.00 0.00 35.69 3.95
2700 2982 3.056107 CCACTGTTCTCCTAACCATCGAA 60.056 47.826 0.00 0.00 0.00 3.71
2717 2999 0.819582 GTTGGATGGGAATGCCACTG 59.180 55.000 0.00 0.00 35.15 3.66
2723 3005 0.255890 ACCCTCGTTGGATGGGAATG 59.744 55.000 4.11 0.00 43.47 2.67
2726 3008 0.838554 TGAACCCTCGTTGGATGGGA 60.839 55.000 4.11 0.00 43.47 4.37
2734 3016 4.405548 AGACTAGTACTTGAACCCTCGTT 58.594 43.478 11.43 0.00 33.88 3.85
2749 3031 1.585006 CACCGGCGTCAAGACTAGT 59.415 57.895 6.01 0.00 0.00 2.57
2761 3043 1.801512 GAAAAATGCGAGCACCGGC 60.802 57.895 0.00 0.00 39.04 6.13
2790 3072 3.825611 CATCGCCAAAAGGCCCGG 61.826 66.667 0.00 0.00 0.00 5.73
2825 3107 2.093306 TTGTAGTCAGCGGGAACATG 57.907 50.000 0.00 0.00 0.00 3.21
2835 3117 5.121611 TCACCATAAACGCATTTGTAGTCAG 59.878 40.000 0.00 0.00 0.00 3.51
2842 3124 3.845775 CGAAGTCACCATAAACGCATTTG 59.154 43.478 0.00 0.00 0.00 2.32
2843 3125 3.500680 ACGAAGTCACCATAAACGCATTT 59.499 39.130 0.00 0.00 29.74 2.32
2882 3164 2.383527 CCGAAAGACTGAGCCGCAC 61.384 63.158 0.00 0.00 0.00 5.34
2918 3201 1.765597 CTATGAACGCCCCCTACCCC 61.766 65.000 0.00 0.00 0.00 4.95
2919 3202 1.752833 CTATGAACGCCCCCTACCC 59.247 63.158 0.00 0.00 0.00 3.69
2920 3203 1.752833 CCTATGAACGCCCCCTACC 59.247 63.158 0.00 0.00 0.00 3.18
2921 3204 0.761702 TCCCTATGAACGCCCCCTAC 60.762 60.000 0.00 0.00 0.00 3.18
2922 3205 0.192566 ATCCCTATGAACGCCCCCTA 59.807 55.000 0.00 0.00 0.00 3.53
2923 3206 1.073706 ATCCCTATGAACGCCCCCT 60.074 57.895 0.00 0.00 0.00 4.79
2924 3207 1.073199 CATCCCTATGAACGCCCCC 59.927 63.158 0.00 0.00 34.84 5.40
2925 3208 0.035458 CTCATCCCTATGAACGCCCC 59.965 60.000 0.00 0.00 41.57 5.80
2926 3209 0.759346 ACTCATCCCTATGAACGCCC 59.241 55.000 0.00 0.00 41.57 6.13
2927 3210 1.139058 ACACTCATCCCTATGAACGCC 59.861 52.381 0.00 0.00 41.57 5.68
2940 3223 5.673514 TCATACATATGCACACACACTCAT 58.326 37.500 1.58 0.00 33.76 2.90
2968 3251 9.616634 TGTTTTCTTAACATAGTACAGACGTAG 57.383 33.333 0.00 0.00 0.00 3.51
2970 3253 8.922676 CATGTTTTCTTAACATAGTACAGACGT 58.077 33.333 3.10 0.00 38.69 4.34
2993 3276 4.101790 GGTGCGCGTGGAACCATG 62.102 66.667 8.43 8.53 33.94 3.66
2997 3280 3.887335 TAAGGGGTGCGCGTGGAAC 62.887 63.158 8.43 0.00 0.00 3.62
2998 3281 3.627952 TAAGGGGTGCGCGTGGAA 61.628 61.111 8.43 0.00 0.00 3.53
2999 3282 4.382320 GTAAGGGGTGCGCGTGGA 62.382 66.667 8.43 0.00 0.00 4.02
3000 3283 2.510064 TTAGTAAGGGGTGCGCGTGG 62.510 60.000 8.43 0.00 0.00 4.94
3001 3284 0.461339 ATTAGTAAGGGGTGCGCGTG 60.461 55.000 8.43 0.00 0.00 5.34
3002 3285 1.068127 CTATTAGTAAGGGGTGCGCGT 59.932 52.381 8.43 0.00 0.00 6.01
3003 3286 1.068127 ACTATTAGTAAGGGGTGCGCG 59.932 52.381 0.00 0.00 0.00 6.86
3004 3287 2.904697 ACTATTAGTAAGGGGTGCGC 57.095 50.000 0.00 0.00 0.00 6.09
3005 3288 7.797038 AAATTTACTATTAGTAAGGGGTGCG 57.203 36.000 14.29 0.00 41.23 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.