>input_sequence_61936
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-------------------------------------------------------------------------------A
TGGCTCTAGTGGGTCAGCCAGCCACGTTCTGCTACGACGGCTTCATCGCTGACGGTGTGCCGGCGCTCATGGACGCCGGC
GGCGTC---GGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTGGCCACGCCCA
CGCATGGGAATT---GCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGCGTCAACGCGTTCGGGGGCCACGACCTCG
GCTGGACCAGCCCAGCCGGCCGCATGTCCT---------CCTCCTCTTCGGTGCTCACCTTCGACAGCCCGGGAGAGGAC
AACTGCGCCGCTGCCGCGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCA---------ACCGCGCC
GGCGGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGCCGCACGGCGGCATCCCCTTCGCACAAGCGGCCTCGAGCGC
GCGCGCAGGCACAGCAGGGCTCGGAGCAAGAAAGCACCACTCTTCCCAAGAAACAGTGCGGCGGCGACAGGAAATCGGCA
ACCAAGCCCACCAAAACGTCCGCGGCCACCAGTTCGGCCAAGGACACTCAGAGCGATGCAGCCAAGGTACGCTCATGGAG
TTTCGTCCCGAACCATCGCAATTAAGGGAGAGCTCAACCTCAATTCTCAGTGAACTGACAAGGTTTACTGAATCACTGTG
GACTACAGACTCGTCGTGAGCGGATCGGGGAGCGGCTGAGAGTTCTGCAGGAGCTGGTGCCCAACGGCAGCAAGGTGGAC
ATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACAGACATTAACCGGTTT
AGCATTGTGAATTCGGCGTACTCGGTCTCGTTTCTTAGCCGGCACTTGTCTGATCCTAG---CTAACAAGCAAATGATGT
CAGGTGCTCGAGACGGACGCATTCTGGCCTGCTCAGGGCGGCGAGGCGCCGGAGATCTCCCAGGTGAAGGCGGCACTCGA
CGCCATCATCCTCTCGTCGTCGCAGCAGCCTCGTCAGTGGAGCTAA----------------------------------
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>chr7A_1_TraesCS7A01G229900
TAAATGACCCACCTATGGAGGGATATCTGCACGGACAGCACGGTGCAATACTGCAGATGACATGTGGGTGAGGCCCACAT
GACAGCGGCCGTCACTGCAGAGAATTTGCACCCCGAGTGAGAACCTACTGTACCGTTACTTACCTCTCCTGTGGTTTGGA
GAAATTTGTAGTAATTTCATAGAATAAGATTTCTATGAGTTTGTAGGAATAGAAACTTATTTCTATGGAGAAATTTTTTC
TATCCTCCACATTTCATAGGAAAACAAATATTAGTCTAGTAAAAAAAGTCTATGATGTGAACCAAATGACATCTCAATTT
CTATTCTTAGTCATAGAATTTGAGACATGTATCTCATTTCCTACGATTTATTTATTCCTATGATTTTTCTACCCAATGAA
AGGCTTAGAGTGAAACTCCGGCTCAAAGGAAGATGATGTTGTCCGTGCACGTGAAATGAACTAGAAGGTACAGAAAATTC
GTGTGACTTGCACTACATAATCCGTCAATCTGAACTCCATCGTCTGGATTTCAAGTCATCACTTCTGATGCTCGAATTGG
TCATCATCCGGCTGCTCTTTGCTCTGGTGTCCCAGCAAGGATGCACAAATATATATGAACAGGATTGATAAATCTCAGTC
GACCGAGATTTAACTAAGTGTATATATGAATCT-GGAATGCTGGATCGTCGATCATACGGAGGGGACTGCCAGTATCTCC
CTAGCGACCCTAAGCAATCGAGGGCATTAAATGCAACTGCATTTCTATAATCCGGCCATGCTAATGCCTCCATGGCATGC
GCTTGTTTAATCGCCGTCCTCCCCGGTGGCCATGTGGGCGTCGTCGCAGAGCAGCGCTATATAAGGCTGTGCCCAAGAAT
ACCTCGCCAAATCACAGAAGCTTAGTC-----------------------CATACAGAGACATTACATACACACGTACGT
GTCGCTGCTTGATACACTAACACTTACGTAGAGTAGCTCGCTTACTTTGCTCA---------------TTGCCGCCGCCA
TGGCTCTAGTGGGTCAGCCAGCCACGTTCTGCTACGACGGCTTCATCGCTGACGGTGTGCCGGCGCTCATGGACGCCGGC
GGCGTC---GGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTGGCCACGCCCA
CGCATGGGAATT---GCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGCGTCAACGCGTTCGGGGGCCACGACCTCG
GCTGGACCAGCCCAGCCGGCCGCATGTCCT---------CCTCCTCTTCGGTGCTCACCTTCGACAGCCCGGGAGAGGAC
AACTGCGCCGCTGCCGCGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCA---------ACCGCGCC
GGCGGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGCCGCACGGCGGCATCCCCTTCGCACAAGCGGCCTCGAGCGC
GCGCGCAGGCACAGCAGGGCTCGGAGCAAGAAAGCACCACTCTTCCCAAGAAACAGTGCGGCGGCGACAGGAAATCGGCA
ACCAAGCCCACCAAAACGTCCGCGGCCACCAGTTCGGCCAAGGACACTCAGAGCGATGCAGCCAAGGTACGCTCATGGAG
TTTCGTCCCGAACCATCGCAATTAAGGGAGAGCTCAACCTCAATTCTCAGTGAACTGACAAGGTTTACTGAATCACTGTG
GACTACAGACTCGTCGTGAGCGGATCGGGGAGCGGCTGAGAGTTCTGCAGGAGCTGGTGCCCAACGGCAGCAAGGTGGAC
ATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACAGACATTAACCGGTTT
AGCATTGTGAATTCGGCGTACTCGGTCTCGTTTCTTAGCCGGCACTTGTCTGATCCTAG---CTAACAAGCAAATGATGT
CAGGTGCTCGAGACGGACGCATTCTGGCCTGCTCAGGGCGGCGAGGCGCCGGAGATCTCCCAGGTGAAGGCGGCACTCGA
CGCCATCATCCTCTCGTCGTCGCAGCAGCCTCGTCAGTGGAGCTAACAGCGAGCCGATACATCACCACTAC----ATACA
TTCTCCCAGAATTCAGAGAGTTACTCTCTGCTCTATCCTCTTTCTATGTTGCTGTCCCATTCCCTAATCTTCTCATC-TT
GCTA-----TGTACTCACCATAGTAGCCACGGTAAACTCTACTAATTGATTAATGACGCCGTGTACTCGATCAACGATGT
GATATAAACATTGTGCTCAGCACTTCATCGTCACTAGTTTCTTTAAAAGAAA---GAGAAAATCCCGCCTCTGCATCATA
AGATGGACACAGCCATTTTATTAAACGTGAACCAAATCCAAGTCTCTAAATACCAAAAGAAACA-----AAACAAAACAA
GGCCACAACAATTAGAAACTTCCACATAATCTACTACTGTCATGCTGGCCAAACTGGTTGAACAAGTCCCATGCAATCAT
TTTCAGATGGCTGCATCCAAAGGTCATAAGTGTCCACACGCTGCG-------ATGACCACATATGGATTAATTTCGTAGC
CCTAAAGTTAAACCGCAAAAAAA---------------------------------------------------------
-----------------------------------------------------------------TGAAATAGATGGTTT
GTTAAAAACACACTCATTTCGAC---------------------------------------------------------
-----------AATCTCAAACTGCCCAAAGAATGGCACAAACTCCCATGTGAATTTGACCCTTAGATTATGGTGCATAAC
ATCAAACATGTGGTTCGATGGTTCGATGGTTAGGAGAACAGTGGCATTCCCATCCAACGAGGGTTCAAGTACTAGTCTTG
ACGCCGGTGCTCGCATTTTTCTGGATTTATTCCGGGCCTTTTGGCGATGTGCGTTCGGTGGAAGGGCATGTTCCCGCTGA
CTACAAATGCGTTTATGGTGACTTCGTCAATCTCAAAAAGATGGTGCGGCTCA-GTCTTTCGGGGTACTCATCGGGTGGG
GGGGTAGGGGGCGTTCATAGGGATGAGTGTGTGTGCATATGTATGAGCGTCTACGTCTGTACTATGTTAAGAAAACATGG
TTCCACGCGCACCCCTTACTAATAGTAAATTTAAAATAAATAATAGAAAAATAAAAACAATC
>chr7B_656
AAGCTG--------------------------------------------------------------------------
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--------------------TATATGTGAATCTGGGAATGCTGGATCGTCGATCATACGGAGAGCAATGCCAGAATCTCA
TAACG----------AATTGCGGACATTAAATGCAAGTGCATTTCTATAATCCGGCCATGCTAATGCCTCCATGGCAGGC
GCTTGTTTAATCGCCGTCTGCCCCAGTGGCCATGTGGGTGTCGTCGCAGAGCTCCGCTATATAAGCTTGTGCCCAGGAAT
ACCTTGCCAAATCACAGAAGCTTAGTTCCTCTCCTATTCTCGTGTG---------------------TACTC----ACGT
GTCGCTGCATGATACACTAGCACT-----AGAGTAACTTGCTTACTTTGCTCTTGTTCGTCATCGTCGTTGCCGCCGCCA
TGGCTCTAGTGGGTCAGCCAGCCACGTTCTGCTACGATGGCTTCGTCGGTGACGGTGTGCCCGCGTTCATGGACGCCGGT
GGCGTC---GGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTAGCCACGCCCA
CGGATGGGAGTTGCCGCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGCGTCAACGCGTTCGGGGGCCACGACGTCG
GCTGGACGAACCCAGCTGGCCGCCTGTCGTCTTCTTCGGCCTCCTCCTCGGTGCTCACCTTCGACAACCAGGGTGAGGAC
AACTACCCCGCTGCCACGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCAGCTGCGGCAACCGCGCT
GGCAGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGCCGCACGGCGGCGTCCCCTTCGCACAAGCGGCCTCGTGCGC
ACGCGGAGGCACAGCAGGGCACGGAGCAAGAAAGCACTACCCTTCCCAAGAAGCAGTGCGGCGGCGATAGGAAATCAGCA
GTCAAGCCTAGCAAAACGTCCGCGCCCACCAGTTCGGCCAAGGACCCTCAAAGCGATGCAGCCAAGGTACGCTCATGGAG
TTTCGTCCCGAACCATCGCAATTAAGGGAG--CTCAACCTCAATTCTCGGTGAACTGACAAGGTTTACTGAATTACTGTG
GGCTACAGACTCGTCGTGAGCGGATCGGGGAGCGTCTGAGAGTCCTGCAGGAGCTGGTGCCCAACGGCAACAAGGTGGAC
ATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACAGACATTAATCGGTTC
AGCAATGTCAATTCGGCGTTTTCGGCCTCGTTTCTTAGCCGGCACTTGTCTAATTGTAG---CTAACAAACAAATGATGT
CAGGTGCTCGAGACGGACGCATTCTGGCCTGCTCAGGGAGGCGAGGCGCCGGAGATCTCCCAGGTGAAGGCGGCACTCGA
CGCCATCATCCTCTCGTCGTCGCAGCAGCTTCGTCAGTGGAGCTAACAGCGAACCGATACATCACCACTA--CATATACA
TTCTCCCAGAATTCAGAGAGTCGCTCTCTGCTCTATCCTCTTTCTATGTTGCTGTCCCATTCCCTAATCTTCTCATC-TT
GCTATGTACTGTACTCACCATAGTAGCCACAGTAAGCTCTACTAATTGGTTAATGACGGCGTGCACTCGATCA-------
---ATAAACGTTGTGCTCAGTACTTCATCGTTACTAGTTTCTTTCAAAAAAAAAGGAGAAAATCCCGCCTCTGCACTATA
AGATGGACACAGCCA---------ACGTGAACCAAATCCAAGTCTCTAAACACCAAAAGAAACAAAACAAAACAAAACAA
GGCCACAACAATTAGAAACATCCACATAATCTACTACTGTCATGCTAGCCAGACTGGTCGAACAAATCCCATGCAATCAT
TTTCAGATGGCTGCATCCAAAGATCATAAGTGTCCACACGCTGCGTATGACTATGACCACATACGGATTAGTGTCTGTTT
AGGACACACATAGTTATATCACATCTAAGGTGATGTCCACTCTATTTGTGGTCTTTATTTTTGTCCTAGTTTTTTTTTGT
TTCTTGTTGCTGCATTATATATTTGTGGAAACTTAGATGTGACATCCTTAAAAAACATCTAGATGTGAATTAGATAAACT
GAAAAAAATAAACCATAAATATAGTGAACATCAGGTTAGATGTGACATAACTATGTAACATCTAGATATGTCCTAGAGAG
ACCCTTCCGAAAATCTCAAACCGCCCAAAAAATGGCACAAGCTCCCATGCGGATTTGACCCTTAGATTATGGCGAATAAC
ATCAAACATGTGGT--------TCGATGGTTAGGAGAAAAGTGGTATCCCCATCCCACCAGGGCTCAAGTCCTAGTCTTG
ATACCAGTGGTCGCATTTTTCTAGATTTAGTTCGAGCCTTTTGGAGATGTGCGTTCGGTGGAAGGGTATGTTTCCGTTGA
CTAAGAATGCGTCTGTGGCCACTTCGTTAATCTCAAAAAGATGTTACGGCTCA-GTCTTTCGAAGGTGCTCATAGGG---
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>chr7D_688
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------------------------------------------------TCGATCATACGGAGGGGAGTGCCAGTATCTCC
CTAGCGACCCTAAGCAATTGAGGGCATTAAATGCAATTGCATTTCTATAATCCGGCCATGCTAATGCCTCCATGGCATGC
GCTTGTTTAATCGCCGTCTTCCCCAGTGGCCATGTGGGCGTCGTCGCAGAGCAGCGCTATATAAGGCTGTGCCCAAGAGT
ACCTTACCAAATCACAGAAGCCTAGTTCCTCCCCTGTTCTCGTGTGCTAGCATACAGAGACATTACATACAC----ACGT
GTCGCTGTTTGATACACCAACACTTACGTAGAGTAGCTCGCTTACTTTGCTCA---------------TTGCCGCCGCCA
TGGCTCTAGTGGGTCAGCCAGCCACGTTTTGCTACGACGGCTTCGTCGGTGACGGTGTGCCGGCATTCATGGACGCCGGC
GGCGTCCTCGGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTGGCCACGCCCA
CGCATGGGAGCT---GCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGTGTCAACGCGTTCGGGAGCCACGACCTCG
GCTGGACCAGCCCAGCCGGCCGCATGTCCT---------CCTCCTCTTCGGTGCTCACCTTCGACAGCCCGGGCGAGGAC
AAGTGCGCTGCTGCCGCGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCA---------ACCGCGCC
GGCGGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGTCCCCCGGCGGCCTCCCCTTCGCACAAGCGGCCTCGTGCGC
GCGCGCAGGCACAGCAGGGAACGGAGCAAGAAAGCACTACTCTTCCCAAGAAGCAGTGCGGCGGCGACAGGAAATCAGCA
GTCAAGCCTATCAAAACGTCCGCGGCCACCACTTCAGCCAAAGACCCTCAAAGCGATGCTGCCAAGGTACGCTCATGGAG
TTTCGTCCCGAACCATCGCAATTAAGGGAG--CTCAACCTCAATTCTCAGTGAACTGACAAGGTTTACTGAATTACTGTG
GACTACAGACTCGTCGTGAGCGGATCGGGGAGCGTCTGAGAGTTCTGCAGGAGCTGGTGCCCAACGGCAACAAGGTGGAC
ATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACATACATTAATCGGTTT
AGCAATGTGAATCCGGCGTCTTCGGCCTCGTTTCTTAGCCGGCACTTGTCTGATCCTAGTAGCTAACAAGCAAATGATGT
CAGGTGCTCGAGACGGACGCATTCTGGCCTGCGCAGGGCGGCGAGGCGCCGGAGATCTCCCAGGTGAAGGCGGCACTCGA
CGCCATCATCCTCTCGTCGTCGCAGCAGCCTCGTCAGTGGAGCTAACAGCGAACCGATACATCAGCACTACACATATACA
TCCTCCCAGAATTCACAGAGTTACTCTCTGCTCTATCCTCTTTCTATGTTGCTGTCCCATTCCCTAATCTTCTCATCTTT
GCTA-----TGTACTCACCGTAGTAGCCACAGTAAACTCTACTAATTGGTTAATGATGGCGTGCACTCGATCGACGATGT
AATATAAACATTGTGCTCAGCACTTCATCGTCACTAGTTTCTTTT--AAAAAAAGGAGAAAATCCCGCCTCTGCATCATA
AGATGGACACAGCCATTTTATTAAACGTGAACCAAATCCAAGTCTCTAAATACCAAAAGAAACAAAACAAAACAAAACAA
GGCCACAACAATTAGAAACTTCCACATAATCTACTACTGTCATGCTAGCCAAACTGGTTGAACAAGTCCCATGCAATCAT
TTTCAGATGGCTGCATCCAAAAGTCATAAGTGTCCACACGTTGCG-------ATGACCACATACGAAATAATTTTGTAGC
TCTAAAGATAACCCGCAAAAAAT---------------------------------------------------------
-----------------------------------------------------------------TGAAATAGATGATTT
GTTAAAAACACACTCATTTTGAC---------------------------------------------------------
-----------AATCTCAAACTGCCCAAAGAATGGCACAAACTCCCATGCAGAATTGACCCTTAGATTATGGTGAATAAC
ATCAAACATGTGGTC--------CGAAGGTTAGGAGGAGAGTGGTATCCCCATCCCACGAGGGTTCGAGTCCTAGTCTTG
ACACCGGTGCTCGCATTTTTCTGGATTTATTTCGGGCCTTTTGGCGATGTGCGTTCGATGTAAGGGTATGTTCCCGTTGA
CTATGAATGCATCTATGACGACTTTGTCAATCTCAAAAGGATGTTGCGGCTCAAGTCTTTCGGGGTACTAGGGGGGGTGC
----------GCGTTCATAGGGGTGAGTGTGTGTGCATATGTATGAGCGTATGCGTGTGTACTATGTTAAGAAAA-----
--------------------------------------------------------------
>SNPs
S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----S----------------------------------------S-------------
------------------S-----------------S-------------------------------------------
------------------S-----S-------------------------------------------------------
----S---------------------S---------------------------------------------SSSS----
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--------------------------------------------S---S----------------S--------------
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---------S----------------------------------------------------------------------
-------------------------------------------------------------------------S------
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---------------------------------------------------S-----------------------S----
--------------------S----------------S--------------S-----------------------S---
SS------S-S----------------------------------S----S-----------------------------
------------------------------SS-----------------------------------------S------
----------------------------------S----------------------------------S----------
-------------------------------------------------------------------------S------
----S--------------SS----S------------------------------------------------------
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----------------------------------------------------S---------------------------
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------------------------------S-----------------S---------S----S----------------
S-------------------------------------------S---S-------------------------------
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----------------------------------------------S---------------------------------
---------------------------------------------------------------S----------------
S------S------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-------------------S------------------------------------------------------------
-------------------------------------------------S-S----------------------S-----
--------------SSSSSSSS----------------S-----S--S-------S--------------S---------
--S----------------------------S----------------------------------S---------S---
---SS-------S-----S------------------------S-------------------------SSSS---SS-S
SSSSSSSSSS------------S---------------------------S-S---S------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_451
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-------------------------------GATGATGTTGTCCGTGCACG-----------------------------
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>reverse_1946
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-------------------------TCTCGTTTCTTAGCCGGCAC-----------------------------------
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>forward_579
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-------------------------------------------------------------------------------G
TCATCATCCGGCTGCTCTT-------------------------------------------------------------
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>reverse_2527
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----------------------------------------------GGCCAAACTGGTTGAACAAGT-------------
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