Multiple sequence alignment - TraesCS7A01G227600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G227600 chr7A 100.000 2390 0 0 1 2390 198188989 198191378 0.000000e+00 4414
1 TraesCS7A01G227600 chr7A 92.137 992 49 9 609 1581 198025708 198026689 0.000000e+00 1373
2 TraesCS7A01G227600 chr7A 96.364 385 14 0 2 386 533699480 533699864 3.350000e-178 634
3 TraesCS7A01G227600 chr7A 96.364 385 14 0 2 386 538246001 538245617 3.350000e-178 634
4 TraesCS7A01G227600 chr7A 95.696 395 16 1 2 396 630333765 630334158 3.350000e-178 634
5 TraesCS7A01G227600 chr7A 94.710 397 21 0 2 398 200195376 200195772 3.380000e-173 617
6 TraesCS7A01G227600 chr7A 93.467 398 25 1 2 398 711060424 711060821 7.360000e-165 590
7 TraesCS7A01G227600 chr7A 92.019 213 14 1 398 610 198017000 198017209 1.800000e-76 296
8 TraesCS7A01G227600 chr7B 93.250 2000 76 14 398 2370 329797670 329795703 0.000000e+00 2891
9 TraesCS7A01G227600 chr7D 92.006 2014 86 25 398 2370 186830869 186828890 0.000000e+00 2758
10 TraesCS7A01G227600 chr1A 97.733 397 9 0 2 398 521389162 521389558 0.000000e+00 684
11 TraesCS7A01G227600 chr4A 95.190 395 18 1 2 396 526273970 526273577 7.250000e-175 623
12 TraesCS7A01G227600 chr6A 94.710 397 21 0 2 398 126430301 126429905 3.380000e-173 617
13 TraesCS7A01G227600 chr5A 93.970 398 23 1 2 398 72458029 72458426 3.400000e-168 601
14 TraesCS7A01G227600 chr2A 75.284 352 59 21 119 453 47069703 47070043 2.480000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G227600 chr7A 198188989 198191378 2389 False 4414 4414 100.000 1 2390 1 chr7A.!!$F3 2389
1 TraesCS7A01G227600 chr7A 198025708 198026689 981 False 1373 1373 92.137 609 1581 1 chr7A.!!$F2 972
2 TraesCS7A01G227600 chr7B 329795703 329797670 1967 True 2891 2891 93.250 398 2370 1 chr7B.!!$R1 1972
3 TraesCS7A01G227600 chr7D 186828890 186830869 1979 True 2758 2758 92.006 398 2370 1 chr7D.!!$R1 1972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.178068 TTGCGGACTCTATGAAGCCC 59.822 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2309 0.104672 TCTTCAACCTCTGACCCCCA 60.105 55.0 0.0 0.0 32.21 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.362151 ACCACAATCTTTCTTTTAGTTATTCCA 57.638 29.630 0.00 0.00 0.00 3.53
28 29 9.626045 CCACAATCTTTCTTTTAGTTATTCCAC 57.374 33.333 0.00 0.00 0.00 4.02
29 30 9.626045 CACAATCTTTCTTTTAGTTATTCCACC 57.374 33.333 0.00 0.00 0.00 4.61
30 31 8.512138 ACAATCTTTCTTTTAGTTATTCCACCG 58.488 33.333 0.00 0.00 0.00 4.94
31 32 7.625828 ATCTTTCTTTTAGTTATTCCACCGG 57.374 36.000 0.00 0.00 0.00 5.28
32 33 6.536447 TCTTTCTTTTAGTTATTCCACCGGT 58.464 36.000 0.00 0.00 0.00 5.28
33 34 6.999871 TCTTTCTTTTAGTTATTCCACCGGTT 59.000 34.615 2.97 0.00 0.00 4.44
34 35 7.503230 TCTTTCTTTTAGTTATTCCACCGGTTT 59.497 33.333 2.97 0.00 0.00 3.27
35 36 8.688747 TTTCTTTTAGTTATTCCACCGGTTTA 57.311 30.769 2.97 0.00 0.00 2.01
36 37 7.671495 TCTTTTAGTTATTCCACCGGTTTAC 57.329 36.000 2.97 0.00 0.00 2.01
37 38 6.654582 TCTTTTAGTTATTCCACCGGTTTACC 59.345 38.462 2.97 0.00 0.00 2.85
38 39 3.354948 AGTTATTCCACCGGTTTACCC 57.645 47.619 2.97 0.00 0.00 3.69
39 40 2.643801 AGTTATTCCACCGGTTTACCCA 59.356 45.455 2.97 0.00 0.00 4.51
40 41 3.267551 AGTTATTCCACCGGTTTACCCAT 59.732 43.478 2.97 0.00 0.00 4.00
41 42 4.474287 AGTTATTCCACCGGTTTACCCATA 59.526 41.667 2.97 0.00 0.00 2.74
42 43 5.044993 AGTTATTCCACCGGTTTACCCATAA 60.045 40.000 2.97 0.00 0.00 1.90
43 44 4.529716 ATTCCACCGGTTTACCCATAAT 57.470 40.909 2.97 0.00 0.00 1.28
44 45 3.564053 TCCACCGGTTTACCCATAATC 57.436 47.619 2.97 0.00 0.00 1.75
45 46 2.173143 TCCACCGGTTTACCCATAATCC 59.827 50.000 2.97 0.00 0.00 3.01
46 47 2.173996 CCACCGGTTTACCCATAATCCT 59.826 50.000 2.97 0.00 30.61 3.24
47 48 3.372241 CCACCGGTTTACCCATAATCCTT 60.372 47.826 2.97 0.00 30.61 3.36
48 49 4.274978 CACCGGTTTACCCATAATCCTTT 58.725 43.478 2.97 0.00 30.61 3.11
49 50 4.707934 CACCGGTTTACCCATAATCCTTTT 59.292 41.667 2.97 0.00 30.61 2.27
50 51 5.186215 CACCGGTTTACCCATAATCCTTTTT 59.814 40.000 2.97 0.00 30.61 1.94
73 74 9.930693 TTTTTAATTAGCCACATCCGTTTAAAT 57.069 25.926 0.00 0.00 0.00 1.40
109 110 8.056407 AGTCCACAATCCTTTCTTTAATTAGC 57.944 34.615 0.00 0.00 0.00 3.09
110 111 7.890655 AGTCCACAATCCTTTCTTTAATTAGCT 59.109 33.333 0.00 0.00 0.00 3.32
111 112 8.184848 GTCCACAATCCTTTCTTTAATTAGCTC 58.815 37.037 0.00 0.00 0.00 4.09
112 113 7.888021 TCCACAATCCTTTCTTTAATTAGCTCA 59.112 33.333 0.00 0.00 0.00 4.26
113 114 8.689972 CCACAATCCTTTCTTTAATTAGCTCAT 58.310 33.333 0.00 0.00 0.00 2.90
117 118 9.591792 AATCCTTTCTTTAATTAGCTCATTTGC 57.408 29.630 0.00 0.00 0.00 3.68
118 119 8.353423 TCCTTTCTTTAATTAGCTCATTTGCT 57.647 30.769 0.00 0.00 46.11 3.91
119 120 8.806146 TCCTTTCTTTAATTAGCTCATTTGCTT 58.194 29.630 0.00 0.00 43.74 3.91
128 129 8.922058 AATTAGCTCATTTGCTTAAACATGAG 57.078 30.769 0.00 5.48 43.77 2.90
129 130 5.320549 AGCTCATTTGCTTAAACATGAGG 57.679 39.130 0.00 0.00 42.00 3.86
130 131 5.012239 AGCTCATTTGCTTAAACATGAGGA 58.988 37.500 0.00 0.00 42.00 3.71
131 132 5.098211 GCTCATTTGCTTAAACATGAGGAC 58.902 41.667 0.00 0.00 42.00 3.85
132 133 5.105997 GCTCATTTGCTTAAACATGAGGACT 60.106 40.000 0.00 0.00 42.00 3.85
133 134 6.258230 TCATTTGCTTAAACATGAGGACTG 57.742 37.500 0.00 0.00 0.00 3.51
134 135 4.503741 TTTGCTTAAACATGAGGACTGC 57.496 40.909 0.00 0.00 0.00 4.40
135 136 2.436417 TGCTTAAACATGAGGACTGCC 58.564 47.619 0.00 0.00 0.00 4.85
136 137 2.224744 TGCTTAAACATGAGGACTGCCA 60.225 45.455 0.00 0.00 36.29 4.92
137 138 2.162408 GCTTAAACATGAGGACTGCCAC 59.838 50.000 0.00 0.00 36.29 5.01
138 139 3.679389 CTTAAACATGAGGACTGCCACT 58.321 45.455 0.00 0.00 36.29 4.00
139 140 2.191128 AAACATGAGGACTGCCACTC 57.809 50.000 0.00 0.00 36.29 3.51
140 141 1.059098 AACATGAGGACTGCCACTCA 58.941 50.000 0.00 0.00 46.62 3.41
146 147 3.916035 TGAGGACTGCCACTCATATACT 58.084 45.455 0.00 0.00 38.71 2.12
147 148 4.290093 TGAGGACTGCCACTCATATACTT 58.710 43.478 0.00 0.00 38.71 2.24
148 149 5.454966 TGAGGACTGCCACTCATATACTTA 58.545 41.667 0.00 0.00 38.71 2.24
149 150 5.536538 TGAGGACTGCCACTCATATACTTAG 59.463 44.000 0.00 0.00 38.71 2.18
150 151 5.706447 AGGACTGCCACTCATATACTTAGA 58.294 41.667 0.00 0.00 36.29 2.10
151 152 5.772672 AGGACTGCCACTCATATACTTAGAG 59.227 44.000 0.00 0.00 36.29 2.43
152 153 5.461032 ACTGCCACTCATATACTTAGAGC 57.539 43.478 0.00 0.00 32.71 4.09
153 154 4.022762 ACTGCCACTCATATACTTAGAGCG 60.023 45.833 0.00 0.00 32.71 5.03
154 155 4.142038 TGCCACTCATATACTTAGAGCGA 58.858 43.478 0.00 0.00 32.71 4.93
155 156 4.216472 TGCCACTCATATACTTAGAGCGAG 59.784 45.833 0.00 0.00 32.71 5.03
156 157 4.216687 GCCACTCATATACTTAGAGCGAGT 59.783 45.833 0.00 0.00 32.71 4.18
157 158 5.278561 GCCACTCATATACTTAGAGCGAGTT 60.279 44.000 0.00 0.00 32.71 3.01
158 159 6.146216 CCACTCATATACTTAGAGCGAGTTG 58.854 44.000 0.00 0.00 32.71 3.16
159 160 6.146216 CACTCATATACTTAGAGCGAGTTGG 58.854 44.000 0.00 0.00 32.71 3.77
160 161 6.017026 CACTCATATACTTAGAGCGAGTTGGA 60.017 42.308 0.00 0.00 32.71 3.53
161 162 6.546403 ACTCATATACTTAGAGCGAGTTGGAA 59.454 38.462 0.00 0.00 32.71 3.53
162 163 7.231722 ACTCATATACTTAGAGCGAGTTGGAAT 59.768 37.037 0.00 0.00 32.71 3.01
163 164 7.952671 TCATATACTTAGAGCGAGTTGGAATT 58.047 34.615 0.00 0.00 0.00 2.17
164 165 8.421784 TCATATACTTAGAGCGAGTTGGAATTT 58.578 33.333 0.00 0.00 0.00 1.82
165 166 9.692749 CATATACTTAGAGCGAGTTGGAATTTA 57.307 33.333 0.00 0.00 0.00 1.40
166 167 9.915629 ATATACTTAGAGCGAGTTGGAATTTAG 57.084 33.333 0.00 0.00 0.00 1.85
167 168 6.038997 ACTTAGAGCGAGTTGGAATTTAGT 57.961 37.500 0.00 0.00 0.00 2.24
168 169 7.166691 ACTTAGAGCGAGTTGGAATTTAGTA 57.833 36.000 0.00 0.00 0.00 1.82
169 170 7.609056 ACTTAGAGCGAGTTGGAATTTAGTAA 58.391 34.615 0.00 0.00 0.00 2.24
170 171 8.092687 ACTTAGAGCGAGTTGGAATTTAGTAAA 58.907 33.333 0.00 0.00 0.00 2.01
171 172 9.099454 CTTAGAGCGAGTTGGAATTTAGTAAAT 57.901 33.333 2.10 2.10 0.00 1.40
172 173 7.308782 AGAGCGAGTTGGAATTTAGTAAATG 57.691 36.000 8.88 0.00 0.00 2.32
173 174 6.879458 AGAGCGAGTTGGAATTTAGTAAATGT 59.121 34.615 8.88 0.31 0.00 2.71
174 175 6.842163 AGCGAGTTGGAATTTAGTAAATGTG 58.158 36.000 8.88 0.00 0.00 3.21
175 176 6.653320 AGCGAGTTGGAATTTAGTAAATGTGA 59.347 34.615 8.88 0.00 0.00 3.58
176 177 7.174253 AGCGAGTTGGAATTTAGTAAATGTGAA 59.826 33.333 8.88 0.24 0.00 3.18
177 178 7.968405 GCGAGTTGGAATTTAGTAAATGTGAAT 59.032 33.333 8.88 0.00 0.00 2.57
178 179 9.277565 CGAGTTGGAATTTAGTAAATGTGAATG 57.722 33.333 8.88 0.00 0.00 2.67
181 182 9.061610 GTTGGAATTTAGTAAATGTGAATGACG 57.938 33.333 8.88 0.00 0.00 4.35
182 183 7.247728 TGGAATTTAGTAAATGTGAATGACGC 58.752 34.615 8.88 0.00 0.00 5.19
183 184 7.094592 TGGAATTTAGTAAATGTGAATGACGCA 60.095 33.333 8.88 0.00 43.33 5.24
191 192 3.052455 TGTGAATGACGCATAGGTTGT 57.948 42.857 0.00 0.00 33.83 3.32
192 193 3.407698 TGTGAATGACGCATAGGTTGTT 58.592 40.909 0.00 0.00 33.83 2.83
193 194 3.188254 TGTGAATGACGCATAGGTTGTTG 59.812 43.478 0.00 0.00 33.83 3.33
194 195 2.161410 TGAATGACGCATAGGTTGTTGC 59.839 45.455 0.00 0.00 35.50 4.17
195 196 1.819928 ATGACGCATAGGTTGTTGCA 58.180 45.000 0.00 0.00 38.80 4.08
196 197 1.819928 TGACGCATAGGTTGTTGCAT 58.180 45.000 0.00 0.00 38.80 3.96
197 198 1.737236 TGACGCATAGGTTGTTGCATC 59.263 47.619 0.00 0.00 38.80 3.91
198 199 0.726827 ACGCATAGGTTGTTGCATCG 59.273 50.000 0.00 0.00 38.80 3.84
199 200 1.006086 CGCATAGGTTGTTGCATCGA 58.994 50.000 0.00 0.00 38.80 3.59
200 201 1.396648 CGCATAGGTTGTTGCATCGAA 59.603 47.619 0.00 0.00 38.80 3.71
201 202 2.537529 CGCATAGGTTGTTGCATCGAAG 60.538 50.000 0.00 0.00 38.80 3.79
202 203 2.677836 GCATAGGTTGTTGCATCGAAGA 59.322 45.455 0.00 0.00 45.75 2.87
203 204 3.313526 GCATAGGTTGTTGCATCGAAGAT 59.686 43.478 0.00 0.00 45.12 2.40
204 205 4.553547 GCATAGGTTGTTGCATCGAAGATC 60.554 45.833 0.00 0.00 45.12 2.75
205 206 2.359900 AGGTTGTTGCATCGAAGATCC 58.640 47.619 0.00 0.00 45.12 3.36
206 207 2.083774 GGTTGTTGCATCGAAGATCCA 58.916 47.619 0.00 0.00 45.12 3.41
207 208 2.096496 GGTTGTTGCATCGAAGATCCAG 59.904 50.000 0.00 0.00 45.12 3.86
208 209 3.002791 GTTGTTGCATCGAAGATCCAGA 58.997 45.455 0.00 0.00 45.12 3.86
209 210 3.548745 TGTTGCATCGAAGATCCAGAT 57.451 42.857 0.00 0.00 45.12 2.90
210 211 4.670896 TGTTGCATCGAAGATCCAGATA 57.329 40.909 0.00 0.00 45.12 1.98
211 212 4.625028 TGTTGCATCGAAGATCCAGATAG 58.375 43.478 0.00 0.00 45.12 2.08
212 213 3.949842 TGCATCGAAGATCCAGATAGG 57.050 47.619 0.00 0.00 45.12 2.57
226 227 6.884472 TCCAGATAGGAGGTCATGTTTAAA 57.116 37.500 0.00 0.00 43.07 1.52
227 228 7.451731 TCCAGATAGGAGGTCATGTTTAAAT 57.548 36.000 0.00 0.00 43.07 1.40
228 229 7.872138 TCCAGATAGGAGGTCATGTTTAAATT 58.128 34.615 0.00 0.00 43.07 1.82
229 230 7.993183 TCCAGATAGGAGGTCATGTTTAAATTC 59.007 37.037 0.00 0.00 43.07 2.17
230 231 7.995488 CCAGATAGGAGGTCATGTTTAAATTCT 59.005 37.037 0.00 0.00 41.22 2.40
231 232 9.050601 CAGATAGGAGGTCATGTTTAAATTCTC 57.949 37.037 0.00 0.00 0.00 2.87
232 233 8.772250 AGATAGGAGGTCATGTTTAAATTCTCA 58.228 33.333 0.00 0.00 0.00 3.27
233 234 8.738645 ATAGGAGGTCATGTTTAAATTCTCAC 57.261 34.615 0.00 0.00 0.00 3.51
234 235 6.542821 AGGAGGTCATGTTTAAATTCTCACA 58.457 36.000 0.00 0.00 0.00 3.58
235 236 7.004086 AGGAGGTCATGTTTAAATTCTCACAA 58.996 34.615 0.00 0.00 0.00 3.33
236 237 7.671398 AGGAGGTCATGTTTAAATTCTCACAAT 59.329 33.333 0.00 0.00 0.00 2.71
237 238 7.756722 GGAGGTCATGTTTAAATTCTCACAATG 59.243 37.037 0.00 0.00 0.00 2.82
238 239 8.181904 AGGTCATGTTTAAATTCTCACAATGT 57.818 30.769 0.00 0.00 0.00 2.71
239 240 8.641541 AGGTCATGTTTAAATTCTCACAATGTT 58.358 29.630 0.00 0.00 0.00 2.71
240 241 9.906660 GGTCATGTTTAAATTCTCACAATGTTA 57.093 29.630 0.00 0.00 0.00 2.41
282 283 2.024176 TTTGCGGACTCTATGAAGCC 57.976 50.000 0.00 0.00 0.00 4.35
283 284 0.178068 TTGCGGACTCTATGAAGCCC 59.822 55.000 0.00 0.00 0.00 5.19
284 285 0.975556 TGCGGACTCTATGAAGCCCA 60.976 55.000 0.00 0.00 0.00 5.36
285 286 0.394565 GCGGACTCTATGAAGCCCAT 59.605 55.000 0.00 0.00 39.25 4.00
286 287 1.618837 GCGGACTCTATGAAGCCCATA 59.381 52.381 0.00 0.00 36.71 2.74
287 288 2.037251 GCGGACTCTATGAAGCCCATAA 59.963 50.000 0.00 0.00 37.30 1.90
288 289 3.494398 GCGGACTCTATGAAGCCCATAAA 60.494 47.826 0.00 0.00 37.30 1.40
289 290 4.703897 CGGACTCTATGAAGCCCATAAAA 58.296 43.478 0.00 0.00 37.30 1.52
290 291 4.752101 CGGACTCTATGAAGCCCATAAAAG 59.248 45.833 0.00 2.66 37.30 2.27
291 292 5.453339 CGGACTCTATGAAGCCCATAAAAGA 60.453 44.000 10.30 2.29 37.30 2.52
292 293 5.760743 GGACTCTATGAAGCCCATAAAAGAC 59.239 44.000 10.30 6.39 37.30 3.01
293 294 5.685728 ACTCTATGAAGCCCATAAAAGACC 58.314 41.667 10.30 0.00 37.30 3.85
294 295 5.048846 TCTATGAAGCCCATAAAAGACCC 57.951 43.478 0.00 0.00 37.30 4.46
295 296 3.756082 ATGAAGCCCATAAAAGACCCA 57.244 42.857 0.00 0.00 32.72 4.51
296 297 3.756082 TGAAGCCCATAAAAGACCCAT 57.244 42.857 0.00 0.00 0.00 4.00
297 298 3.631250 TGAAGCCCATAAAAGACCCATC 58.369 45.455 0.00 0.00 0.00 3.51
298 299 2.348411 AGCCCATAAAAGACCCATCG 57.652 50.000 0.00 0.00 0.00 3.84
299 300 1.843851 AGCCCATAAAAGACCCATCGA 59.156 47.619 0.00 0.00 0.00 3.59
300 301 2.241176 AGCCCATAAAAGACCCATCGAA 59.759 45.455 0.00 0.00 0.00 3.71
301 302 3.020984 GCCCATAAAAGACCCATCGAAA 58.979 45.455 0.00 0.00 0.00 3.46
302 303 3.636764 GCCCATAAAAGACCCATCGAAAT 59.363 43.478 0.00 0.00 0.00 2.17
303 304 4.499696 GCCCATAAAAGACCCATCGAAATG 60.500 45.833 0.00 0.00 0.00 2.32
304 305 4.887071 CCCATAAAAGACCCATCGAAATGA 59.113 41.667 0.00 0.00 34.61 2.57
305 306 5.359576 CCCATAAAAGACCCATCGAAATGAA 59.640 40.000 0.00 0.00 34.61 2.57
306 307 6.127479 CCCATAAAAGACCCATCGAAATGAAA 60.127 38.462 0.00 0.00 34.61 2.69
307 308 7.319646 CCATAAAAGACCCATCGAAATGAAAA 58.680 34.615 0.00 0.00 34.61 2.29
308 309 7.489113 CCATAAAAGACCCATCGAAATGAAAAG 59.511 37.037 0.00 0.00 34.61 2.27
309 310 5.391312 AAAGACCCATCGAAATGAAAAGG 57.609 39.130 0.00 0.00 34.61 3.11
310 311 4.301072 AGACCCATCGAAATGAAAAGGA 57.699 40.909 0.00 0.00 34.61 3.36
311 312 4.010349 AGACCCATCGAAATGAAAAGGAC 58.990 43.478 0.00 0.00 34.61 3.85
312 313 4.010349 GACCCATCGAAATGAAAAGGACT 58.990 43.478 0.00 0.00 34.61 3.85
313 314 3.758554 ACCCATCGAAATGAAAAGGACTG 59.241 43.478 0.00 0.00 34.61 3.51
314 315 4.009675 CCCATCGAAATGAAAAGGACTGA 58.990 43.478 0.00 0.00 34.61 3.41
315 316 4.458989 CCCATCGAAATGAAAAGGACTGAA 59.541 41.667 0.00 0.00 34.61 3.02
316 317 5.393962 CCATCGAAATGAAAAGGACTGAAC 58.606 41.667 0.00 0.00 34.61 3.18
317 318 5.393962 CATCGAAATGAAAAGGACTGAACC 58.606 41.667 0.00 0.00 34.61 3.62
318 319 4.456535 TCGAAATGAAAAGGACTGAACCA 58.543 39.130 0.00 0.00 0.00 3.67
319 320 4.884744 TCGAAATGAAAAGGACTGAACCAA 59.115 37.500 0.00 0.00 0.00 3.67
320 321 5.358442 TCGAAATGAAAAGGACTGAACCAAA 59.642 36.000 0.00 0.00 0.00 3.28
321 322 5.458779 CGAAATGAAAAGGACTGAACCAAAC 59.541 40.000 0.00 0.00 0.00 2.93
322 323 4.937201 ATGAAAAGGACTGAACCAAACC 57.063 40.909 0.00 0.00 0.00 3.27
323 324 3.702792 TGAAAAGGACTGAACCAAACCA 58.297 40.909 0.00 0.00 0.00 3.67
324 325 4.090090 TGAAAAGGACTGAACCAAACCAA 58.910 39.130 0.00 0.00 0.00 3.67
325 326 4.159506 TGAAAAGGACTGAACCAAACCAAG 59.840 41.667 0.00 0.00 0.00 3.61
326 327 3.662759 AAGGACTGAACCAAACCAAGA 57.337 42.857 0.00 0.00 0.00 3.02
327 328 3.662759 AGGACTGAACCAAACCAAGAA 57.337 42.857 0.00 0.00 0.00 2.52
328 329 4.184649 AGGACTGAACCAAACCAAGAAT 57.815 40.909 0.00 0.00 0.00 2.40
329 330 5.319043 AGGACTGAACCAAACCAAGAATA 57.681 39.130 0.00 0.00 0.00 1.75
330 331 5.892348 AGGACTGAACCAAACCAAGAATAT 58.108 37.500 0.00 0.00 0.00 1.28
331 332 7.027874 AGGACTGAACCAAACCAAGAATATA 57.972 36.000 0.00 0.00 0.00 0.86
332 333 7.643123 AGGACTGAACCAAACCAAGAATATAT 58.357 34.615 0.00 0.00 0.00 0.86
333 334 8.778059 AGGACTGAACCAAACCAAGAATATATA 58.222 33.333 0.00 0.00 0.00 0.86
334 335 9.574516 GGACTGAACCAAACCAAGAATATATAT 57.425 33.333 0.00 0.00 0.00 0.86
338 339 9.362151 TGAACCAAACCAAGAATATATATTCCC 57.638 33.333 25.33 8.51 42.29 3.97
339 340 9.588096 GAACCAAACCAAGAATATATATTCCCT 57.412 33.333 25.33 14.26 42.29 4.20
340 341 9.951866 AACCAAACCAAGAATATATATTCCCTT 57.048 29.630 25.33 15.01 42.29 3.95
341 342 9.951866 ACCAAACCAAGAATATATATTCCCTTT 57.048 29.630 25.33 14.43 42.29 3.11
357 358 7.939784 ATTCCCTTTAATAGTTGGACTGAAC 57.060 36.000 0.00 0.00 0.00 3.18
358 359 5.812286 TCCCTTTAATAGTTGGACTGAACC 58.188 41.667 0.00 0.00 0.00 3.62
359 360 5.311121 TCCCTTTAATAGTTGGACTGAACCA 59.689 40.000 0.00 0.00 38.24 3.67
360 361 6.007703 CCCTTTAATAGTTGGACTGAACCAA 58.992 40.000 0.00 0.00 46.02 3.67
367 368 3.374042 TTGGACTGAACCAAACCAAGA 57.626 42.857 0.00 0.00 45.36 3.02
368 369 3.374042 TGGACTGAACCAAACCAAGAA 57.626 42.857 0.00 0.00 36.96 2.52
369 370 3.909732 TGGACTGAACCAAACCAAGAAT 58.090 40.909 0.00 0.00 36.96 2.40
370 371 5.055265 TGGACTGAACCAAACCAAGAATA 57.945 39.130 0.00 0.00 36.96 1.75
371 372 4.825085 TGGACTGAACCAAACCAAGAATAC 59.175 41.667 0.00 0.00 36.96 1.89
372 373 4.217767 GGACTGAACCAAACCAAGAATACC 59.782 45.833 0.00 0.00 0.00 2.73
373 374 5.061721 ACTGAACCAAACCAAGAATACCT 57.938 39.130 0.00 0.00 0.00 3.08
374 375 6.195600 ACTGAACCAAACCAAGAATACCTA 57.804 37.500 0.00 0.00 0.00 3.08
375 376 6.790319 ACTGAACCAAACCAAGAATACCTAT 58.210 36.000 0.00 0.00 0.00 2.57
376 377 7.238710 ACTGAACCAAACCAAGAATACCTATT 58.761 34.615 0.00 0.00 0.00 1.73
377 378 7.393515 ACTGAACCAAACCAAGAATACCTATTC 59.606 37.037 0.00 0.00 41.78 1.75
378 379 6.661805 TGAACCAAACCAAGAATACCTATTCC 59.338 38.462 2.04 0.00 42.29 3.01
379 380 5.516044 ACCAAACCAAGAATACCTATTCCC 58.484 41.667 2.04 0.00 42.29 3.97
380 381 5.255443 ACCAAACCAAGAATACCTATTCCCT 59.745 40.000 2.04 0.00 42.29 4.20
381 382 6.194967 CCAAACCAAGAATACCTATTCCCTT 58.805 40.000 2.04 0.00 42.29 3.95
382 383 6.667848 CCAAACCAAGAATACCTATTCCCTTT 59.332 38.462 2.04 0.00 42.29 3.11
383 384 7.837187 CCAAACCAAGAATACCTATTCCCTTTA 59.163 37.037 2.04 0.00 42.29 1.85
384 385 9.250246 CAAACCAAGAATACCTATTCCCTTTAA 57.750 33.333 2.04 0.00 42.29 1.52
411 412 8.366671 AGTAGGTATAGAAAATGAAATCACGC 57.633 34.615 0.00 0.00 0.00 5.34
412 413 6.619801 AGGTATAGAAAATGAAATCACGCC 57.380 37.500 0.00 0.00 0.00 5.68
512 513 4.256110 CAAAATTTCTTCAATCCTGCCCC 58.744 43.478 0.00 0.00 0.00 5.80
546 547 3.531538 TCGGAGTATGCTTCAAATCCAC 58.468 45.455 0.00 0.00 0.00 4.02
755 778 3.796717 TCAATACTAAATCAGCTCGCACG 59.203 43.478 0.00 0.00 0.00 5.34
785 808 1.112113 TAGTCACCTCAATCCTCGGC 58.888 55.000 0.00 0.00 0.00 5.54
871 895 1.215382 GGCCAACGGAAATTGCCTC 59.785 57.895 0.00 0.00 0.00 4.70
875 899 0.179189 CAACGGAAATTGCCTCGCTC 60.179 55.000 0.00 0.00 0.00 5.03
891 915 4.447054 CCTCGCTCTATTGTGATGAATGAC 59.553 45.833 0.00 0.00 0.00 3.06
920 944 6.985188 AGTTGTAATGCATTAACGAGTCAT 57.015 33.333 20.46 0.00 0.00 3.06
970 994 2.319890 ATTGTACCCGGCCGTCATCC 62.320 60.000 26.12 8.26 0.00 3.51
979 1003 1.448540 GCCGTCATCCTCCACACAG 60.449 63.158 0.00 0.00 0.00 3.66
1063 1087 1.666189 GCCAATGCCGTAAGAGTTCTC 59.334 52.381 0.00 0.00 43.02 2.87
1245 1287 7.528307 CAAAAGATGTGATTGAGAAAGAGAGG 58.472 38.462 0.00 0.00 0.00 3.69
1323 1365 2.627945 TGCAATCGCGTTAGGATCTTT 58.372 42.857 5.77 0.00 42.97 2.52
1406 1448 5.308014 TGGGTGATTCACATGCTATATGAC 58.692 41.667 18.09 0.00 35.86 3.06
1423 1465 1.293924 GACCAGAGGATGCATCAACG 58.706 55.000 27.25 12.42 0.00 4.10
1448 1490 9.599866 CGGATGGCATGAAATATATCTTAGTAA 57.400 33.333 3.81 0.00 0.00 2.24
1529 1571 7.364232 CCTCTCTTTTGCTAGGATCTTGTAAGA 60.364 40.741 0.00 0.00 39.78 2.10
1619 1666 4.164981 AGGGTGATACAGTAGAACAACCA 58.835 43.478 16.55 0.00 40.34 3.67
1620 1667 4.595781 AGGGTGATACAGTAGAACAACCAA 59.404 41.667 16.55 0.00 40.34 3.67
1621 1668 5.072600 AGGGTGATACAGTAGAACAACCAAA 59.927 40.000 16.55 0.00 40.34 3.28
1622 1669 5.766174 GGGTGATACAGTAGAACAACCAAAA 59.234 40.000 11.92 0.00 38.12 2.44
1623 1670 6.433093 GGGTGATACAGTAGAACAACCAAAAT 59.567 38.462 11.92 0.00 38.12 1.82
1624 1671 7.361799 GGGTGATACAGTAGAACAACCAAAATC 60.362 40.741 11.92 0.00 38.12 2.17
1625 1672 7.390718 GGTGATACAGTAGAACAACCAAAATCT 59.609 37.037 0.00 0.00 0.00 2.40
1626 1673 8.443937 GTGATACAGTAGAACAACCAAAATCTC 58.556 37.037 0.00 0.00 0.00 2.75
1627 1674 8.154203 TGATACAGTAGAACAACCAAAATCTCA 58.846 33.333 0.00 0.00 0.00 3.27
1628 1675 9.167311 GATACAGTAGAACAACCAAAATCTCAT 57.833 33.333 0.00 0.00 0.00 2.90
1630 1677 8.324163 ACAGTAGAACAACCAAAATCTCATAC 57.676 34.615 0.00 0.00 0.00 2.39
1631 1678 7.936847 ACAGTAGAACAACCAAAATCTCATACA 59.063 33.333 0.00 0.00 0.00 2.29
1632 1679 8.783093 CAGTAGAACAACCAAAATCTCATACAA 58.217 33.333 0.00 0.00 0.00 2.41
1706 1753 6.089417 CGGTAAGAAAAGGCAATCAAATGAAC 59.911 38.462 0.00 0.00 0.00 3.18
1783 1830 9.137459 TCAAGTAATCCAGTTTCAAACCAAATA 57.863 29.630 0.00 0.00 0.00 1.40
1813 1860 8.736751 ATACATGTATCACAAAAACGAAAACC 57.263 30.769 12.75 0.00 0.00 3.27
1814 1861 5.683743 ACATGTATCACAAAAACGAAAACCG 59.316 36.000 0.00 0.00 45.44 4.44
1815 1862 5.481200 TGTATCACAAAAACGAAAACCGA 57.519 34.783 0.00 0.00 41.76 4.69
1816 1863 5.264712 TGTATCACAAAAACGAAAACCGAC 58.735 37.500 0.00 0.00 41.76 4.79
1900 1947 0.530744 TGCACGTATCTTCCTTCGCT 59.469 50.000 0.00 0.00 0.00 4.93
2145 2192 2.482839 CGAAAGAGGGAGATGAGGAAGC 60.483 54.545 0.00 0.00 0.00 3.86
2210 2257 0.323725 ATGCTTGCGTGGGGAAGAAT 60.324 50.000 0.00 0.00 43.63 2.40
2227 2274 2.538477 AATGGGGGAATGGAGGGGGA 62.538 60.000 0.00 0.00 0.00 4.81
2237 2284 3.569135 ATGGAGGGGGAGTCTTATAGG 57.431 52.381 0.00 0.00 0.00 2.57
2315 2362 4.864334 GGCATGTCGAGGCCCCTG 62.864 72.222 10.76 0.00 43.69 4.45
2318 2365 2.039624 ATGTCGAGGCCCCTGTCT 59.960 61.111 0.00 0.00 0.00 3.41
2319 2366 1.043116 CATGTCGAGGCCCCTGTCTA 61.043 60.000 0.00 0.00 0.00 2.59
2320 2367 1.043673 ATGTCGAGGCCCCTGTCTAC 61.044 60.000 0.00 0.00 0.00 2.59
2321 2368 2.439701 TCGAGGCCCCTGTCTACG 60.440 66.667 0.00 0.00 0.00 3.51
2370 2418 2.193536 GCGGCAAGGTTGTTGGAGT 61.194 57.895 0.00 0.00 0.00 3.85
2371 2419 1.949257 CGGCAAGGTTGTTGGAGTC 59.051 57.895 0.00 0.00 0.00 3.36
2372 2420 0.535102 CGGCAAGGTTGTTGGAGTCT 60.535 55.000 0.00 0.00 0.00 3.24
2373 2421 1.692411 GGCAAGGTTGTTGGAGTCTT 58.308 50.000 0.00 0.00 0.00 3.01
2374 2422 1.338020 GGCAAGGTTGTTGGAGTCTTG 59.662 52.381 0.00 0.00 38.18 3.02
2375 2423 1.338020 GCAAGGTTGTTGGAGTCTTGG 59.662 52.381 0.00 0.00 36.35 3.61
2376 2424 2.930950 CAAGGTTGTTGGAGTCTTGGA 58.069 47.619 0.00 0.00 33.32 3.53
2377 2425 2.880890 CAAGGTTGTTGGAGTCTTGGAG 59.119 50.000 0.00 0.00 33.32 3.86
2378 2426 2.408565 AGGTTGTTGGAGTCTTGGAGA 58.591 47.619 0.00 0.00 0.00 3.71
2379 2427 2.982488 AGGTTGTTGGAGTCTTGGAGAT 59.018 45.455 0.00 0.00 0.00 2.75
2380 2428 3.077359 GGTTGTTGGAGTCTTGGAGATG 58.923 50.000 0.00 0.00 0.00 2.90
2381 2429 3.244561 GGTTGTTGGAGTCTTGGAGATGA 60.245 47.826 0.00 0.00 0.00 2.92
2382 2430 4.389374 GTTGTTGGAGTCTTGGAGATGAA 58.611 43.478 0.00 0.00 0.00 2.57
2383 2431 4.008074 TGTTGGAGTCTTGGAGATGAAC 57.992 45.455 0.00 0.00 0.00 3.18
2384 2432 2.996621 GTTGGAGTCTTGGAGATGAACG 59.003 50.000 0.00 0.00 0.00 3.95
2385 2433 2.525368 TGGAGTCTTGGAGATGAACGA 58.475 47.619 0.00 0.00 0.00 3.85
2386 2434 2.493675 TGGAGTCTTGGAGATGAACGAG 59.506 50.000 0.00 0.00 0.00 4.18
2387 2435 2.494073 GGAGTCTTGGAGATGAACGAGT 59.506 50.000 0.00 0.00 0.00 4.18
2388 2436 3.428316 GGAGTCTTGGAGATGAACGAGTC 60.428 52.174 0.00 0.00 0.00 3.36
2389 2437 3.426615 AGTCTTGGAGATGAACGAGTCT 58.573 45.455 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.362151 TGGAATAACTAAAAGAAAGATTGTGGT 57.638 29.630 0.00 0.00 0.00 4.16
2 3 9.626045 GTGGAATAACTAAAAGAAAGATTGTGG 57.374 33.333 0.00 0.00 0.00 4.17
3 4 9.626045 GGTGGAATAACTAAAAGAAAGATTGTG 57.374 33.333 0.00 0.00 0.00 3.33
4 5 8.512138 CGGTGGAATAACTAAAAGAAAGATTGT 58.488 33.333 0.00 0.00 0.00 2.71
5 6 7.968405 CCGGTGGAATAACTAAAAGAAAGATTG 59.032 37.037 0.00 0.00 0.00 2.67
6 7 7.668469 ACCGGTGGAATAACTAAAAGAAAGATT 59.332 33.333 6.12 0.00 0.00 2.40
7 8 7.173032 ACCGGTGGAATAACTAAAAGAAAGAT 58.827 34.615 6.12 0.00 0.00 2.40
8 9 6.536447 ACCGGTGGAATAACTAAAAGAAAGA 58.464 36.000 6.12 0.00 0.00 2.52
9 10 6.812879 ACCGGTGGAATAACTAAAAGAAAG 57.187 37.500 6.12 0.00 0.00 2.62
10 11 7.585579 AAACCGGTGGAATAACTAAAAGAAA 57.414 32.000 8.52 0.00 0.00 2.52
11 12 7.174772 GGTAAACCGGTGGAATAACTAAAAGAA 59.825 37.037 8.52 0.00 0.00 2.52
12 13 6.654582 GGTAAACCGGTGGAATAACTAAAAGA 59.345 38.462 8.52 0.00 0.00 2.52
13 14 6.127925 GGGTAAACCGGTGGAATAACTAAAAG 60.128 42.308 8.52 0.00 36.71 2.27
14 15 5.709631 GGGTAAACCGGTGGAATAACTAAAA 59.290 40.000 8.52 0.00 36.71 1.52
15 16 5.222007 TGGGTAAACCGGTGGAATAACTAAA 60.222 40.000 8.52 0.00 44.64 1.85
16 17 4.288105 TGGGTAAACCGGTGGAATAACTAA 59.712 41.667 8.52 0.00 44.64 2.24
17 18 3.843027 TGGGTAAACCGGTGGAATAACTA 59.157 43.478 8.52 0.00 44.64 2.24
18 19 2.643801 TGGGTAAACCGGTGGAATAACT 59.356 45.455 8.52 0.00 44.64 2.24
19 20 3.070476 TGGGTAAACCGGTGGAATAAC 57.930 47.619 8.52 1.81 44.64 1.89
20 21 5.447778 TTATGGGTAAACCGGTGGAATAA 57.552 39.130 8.52 4.67 44.64 1.40
21 22 5.456474 GGATTATGGGTAAACCGGTGGAATA 60.456 44.000 8.52 0.00 44.64 1.75
22 23 4.466827 GATTATGGGTAAACCGGTGGAAT 58.533 43.478 8.52 0.00 44.64 3.01
23 24 3.371810 GGATTATGGGTAAACCGGTGGAA 60.372 47.826 8.52 0.00 44.64 3.53
24 25 2.173143 GGATTATGGGTAAACCGGTGGA 59.827 50.000 8.52 0.00 44.64 4.02
25 26 2.173996 AGGATTATGGGTAAACCGGTGG 59.826 50.000 8.52 0.00 44.64 4.61
26 27 3.570912 AGGATTATGGGTAAACCGGTG 57.429 47.619 8.52 0.00 44.64 4.94
27 28 4.596354 AAAGGATTATGGGTAAACCGGT 57.404 40.909 0.00 0.00 44.64 5.28
28 29 5.925506 AAAAAGGATTATGGGTAAACCGG 57.074 39.130 0.00 0.00 44.64 5.28
47 48 9.930693 ATTTAAACGGATGTGGCTAATTAAAAA 57.069 25.926 0.00 0.00 0.00 1.94
83 84 8.523658 GCTAATTAAAGAAAGGATTGTGGACTT 58.476 33.333 0.00 0.00 0.00 3.01
84 85 7.890655 AGCTAATTAAAGAAAGGATTGTGGACT 59.109 33.333 0.00 0.00 0.00 3.85
85 86 8.056407 AGCTAATTAAAGAAAGGATTGTGGAC 57.944 34.615 0.00 0.00 0.00 4.02
86 87 7.888021 TGAGCTAATTAAAGAAAGGATTGTGGA 59.112 33.333 0.00 0.00 0.00 4.02
87 88 8.055279 TGAGCTAATTAAAGAAAGGATTGTGG 57.945 34.615 0.00 0.00 0.00 4.17
91 92 9.591792 GCAAATGAGCTAATTAAAGAAAGGATT 57.408 29.630 0.00 0.00 0.00 3.01
92 93 8.975295 AGCAAATGAGCTAATTAAAGAAAGGAT 58.025 29.630 0.00 0.00 44.50 3.24
93 94 8.353423 AGCAAATGAGCTAATTAAAGAAAGGA 57.647 30.769 0.00 0.00 44.50 3.36
94 95 8.992835 AAGCAAATGAGCTAATTAAAGAAAGG 57.007 30.769 0.00 0.00 45.89 3.11
103 104 7.977853 CCTCATGTTTAAGCAAATGAGCTAATT 59.022 33.333 14.23 0.00 45.89 1.40
104 105 7.340232 TCCTCATGTTTAAGCAAATGAGCTAAT 59.660 33.333 14.23 0.00 45.89 1.73
105 106 6.658816 TCCTCATGTTTAAGCAAATGAGCTAA 59.341 34.615 14.23 3.53 45.89 3.09
106 107 6.094048 GTCCTCATGTTTAAGCAAATGAGCTA 59.906 38.462 14.23 5.33 45.89 3.32
108 109 5.098211 GTCCTCATGTTTAAGCAAATGAGC 58.902 41.667 14.23 2.68 32.76 4.26
109 110 6.320171 CAGTCCTCATGTTTAAGCAAATGAG 58.680 40.000 13.21 13.21 33.42 2.90
110 111 5.335897 GCAGTCCTCATGTTTAAGCAAATGA 60.336 40.000 0.00 0.00 0.00 2.57
111 112 4.860907 GCAGTCCTCATGTTTAAGCAAATG 59.139 41.667 0.00 0.00 0.00 2.32
112 113 4.082026 GGCAGTCCTCATGTTTAAGCAAAT 60.082 41.667 0.00 0.00 0.00 2.32
113 114 3.255642 GGCAGTCCTCATGTTTAAGCAAA 59.744 43.478 0.00 0.00 0.00 3.68
114 115 2.819608 GGCAGTCCTCATGTTTAAGCAA 59.180 45.455 0.00 0.00 0.00 3.91
115 116 2.224744 TGGCAGTCCTCATGTTTAAGCA 60.225 45.455 0.00 0.00 0.00 3.91
116 117 2.162408 GTGGCAGTCCTCATGTTTAAGC 59.838 50.000 0.00 0.00 0.00 3.09
117 118 3.679389 AGTGGCAGTCCTCATGTTTAAG 58.321 45.455 0.00 0.00 0.00 1.85
118 119 3.072330 TGAGTGGCAGTCCTCATGTTTAA 59.928 43.478 19.21 0.00 32.93 1.52
119 120 2.637382 TGAGTGGCAGTCCTCATGTTTA 59.363 45.455 19.21 0.00 32.93 2.01
120 121 1.421268 TGAGTGGCAGTCCTCATGTTT 59.579 47.619 19.21 0.00 32.93 2.83
121 122 1.059098 TGAGTGGCAGTCCTCATGTT 58.941 50.000 19.21 0.00 32.93 2.71
122 123 1.283347 ATGAGTGGCAGTCCTCATGT 58.717 50.000 19.21 0.00 44.58 3.21
123 124 3.766068 ATATGAGTGGCAGTCCTCATG 57.234 47.619 22.41 0.00 45.53 3.07
125 126 3.916035 AGTATATGAGTGGCAGTCCTCA 58.084 45.455 19.21 13.68 41.61 3.86
126 127 4.946478 AAGTATATGAGTGGCAGTCCTC 57.054 45.455 19.21 8.19 0.00 3.71
127 128 5.706447 TCTAAGTATATGAGTGGCAGTCCT 58.294 41.667 19.21 12.24 0.00 3.85
128 129 5.565834 GCTCTAAGTATATGAGTGGCAGTCC 60.566 48.000 19.21 3.79 0.00 3.85
129 130 5.465935 GCTCTAAGTATATGAGTGGCAGTC 58.534 45.833 15.47 15.47 0.00 3.51
130 131 4.022762 CGCTCTAAGTATATGAGTGGCAGT 60.023 45.833 0.00 0.00 35.45 4.40
131 132 4.216472 TCGCTCTAAGTATATGAGTGGCAG 59.784 45.833 0.00 0.00 38.45 4.85
132 133 4.142038 TCGCTCTAAGTATATGAGTGGCA 58.858 43.478 0.00 0.00 38.45 4.92
133 134 4.216687 ACTCGCTCTAAGTATATGAGTGGC 59.783 45.833 0.00 0.00 38.45 5.01
134 135 5.950758 ACTCGCTCTAAGTATATGAGTGG 57.049 43.478 0.00 0.00 38.45 4.00
135 136 6.017026 TCCAACTCGCTCTAAGTATATGAGTG 60.017 42.308 0.00 0.00 39.04 3.51
136 137 6.062749 TCCAACTCGCTCTAAGTATATGAGT 58.937 40.000 0.00 0.00 36.83 3.41
137 138 6.561737 TCCAACTCGCTCTAAGTATATGAG 57.438 41.667 0.00 0.00 0.00 2.90
138 139 6.954487 TTCCAACTCGCTCTAAGTATATGA 57.046 37.500 0.00 0.00 0.00 2.15
139 140 8.594881 AAATTCCAACTCGCTCTAAGTATATG 57.405 34.615 0.00 0.00 0.00 1.78
140 141 9.915629 CTAAATTCCAACTCGCTCTAAGTATAT 57.084 33.333 0.00 0.00 0.00 0.86
141 142 8.910944 ACTAAATTCCAACTCGCTCTAAGTATA 58.089 33.333 0.00 0.00 0.00 1.47
142 143 7.783042 ACTAAATTCCAACTCGCTCTAAGTAT 58.217 34.615 0.00 0.00 0.00 2.12
143 144 7.166691 ACTAAATTCCAACTCGCTCTAAGTA 57.833 36.000 0.00 0.00 0.00 2.24
144 145 6.038997 ACTAAATTCCAACTCGCTCTAAGT 57.961 37.500 0.00 0.00 0.00 2.24
145 146 8.475331 TTTACTAAATTCCAACTCGCTCTAAG 57.525 34.615 0.00 0.00 0.00 2.18
146 147 8.879759 CATTTACTAAATTCCAACTCGCTCTAA 58.120 33.333 0.00 0.00 0.00 2.10
147 148 8.038944 ACATTTACTAAATTCCAACTCGCTCTA 58.961 33.333 0.00 0.00 0.00 2.43
148 149 6.879458 ACATTTACTAAATTCCAACTCGCTCT 59.121 34.615 0.00 0.00 0.00 4.09
149 150 6.961554 CACATTTACTAAATTCCAACTCGCTC 59.038 38.462 0.00 0.00 0.00 5.03
150 151 6.653320 TCACATTTACTAAATTCCAACTCGCT 59.347 34.615 0.00 0.00 0.00 4.93
151 152 6.837992 TCACATTTACTAAATTCCAACTCGC 58.162 36.000 0.00 0.00 0.00 5.03
152 153 9.277565 CATTCACATTTACTAAATTCCAACTCG 57.722 33.333 0.00 0.00 0.00 4.18
155 156 9.061610 CGTCATTCACATTTACTAAATTCCAAC 57.938 33.333 0.00 0.00 0.00 3.77
156 157 7.753132 GCGTCATTCACATTTACTAAATTCCAA 59.247 33.333 0.00 0.00 0.00 3.53
157 158 7.094592 TGCGTCATTCACATTTACTAAATTCCA 60.095 33.333 0.00 0.00 0.00 3.53
158 159 7.247728 TGCGTCATTCACATTTACTAAATTCC 58.752 34.615 0.00 0.00 0.00 3.01
159 160 8.841444 ATGCGTCATTCACATTTACTAAATTC 57.159 30.769 0.00 0.00 0.00 2.17
160 161 9.935682 CTATGCGTCATTCACATTTACTAAATT 57.064 29.630 0.00 0.00 0.00 1.82
161 162 8.559536 CCTATGCGTCATTCACATTTACTAAAT 58.440 33.333 0.00 0.00 0.00 1.40
162 163 7.551262 ACCTATGCGTCATTCACATTTACTAAA 59.449 33.333 0.00 0.00 0.00 1.85
163 164 7.045416 ACCTATGCGTCATTCACATTTACTAA 58.955 34.615 0.00 0.00 0.00 2.24
164 165 6.578944 ACCTATGCGTCATTCACATTTACTA 58.421 36.000 0.00 0.00 0.00 1.82
165 166 5.428253 ACCTATGCGTCATTCACATTTACT 58.572 37.500 0.00 0.00 0.00 2.24
166 167 5.734855 ACCTATGCGTCATTCACATTTAC 57.265 39.130 0.00 0.00 0.00 2.01
167 168 5.645929 ACAACCTATGCGTCATTCACATTTA 59.354 36.000 0.00 0.00 0.00 1.40
168 169 4.458989 ACAACCTATGCGTCATTCACATTT 59.541 37.500 0.00 0.00 0.00 2.32
169 170 4.009675 ACAACCTATGCGTCATTCACATT 58.990 39.130 0.00 0.00 0.00 2.71
170 171 3.609853 ACAACCTATGCGTCATTCACAT 58.390 40.909 0.00 0.00 0.00 3.21
171 172 3.052455 ACAACCTATGCGTCATTCACA 57.948 42.857 0.00 0.00 0.00 3.58
172 173 3.747193 CAACAACCTATGCGTCATTCAC 58.253 45.455 0.00 0.00 0.00 3.18
173 174 2.161410 GCAACAACCTATGCGTCATTCA 59.839 45.455 0.00 0.00 32.17 2.57
174 175 2.161410 TGCAACAACCTATGCGTCATTC 59.839 45.455 0.00 0.00 45.47 2.67
175 176 2.158559 TGCAACAACCTATGCGTCATT 58.841 42.857 0.00 0.00 45.47 2.57
176 177 1.819928 TGCAACAACCTATGCGTCAT 58.180 45.000 0.00 0.00 45.47 3.06
177 178 1.819928 ATGCAACAACCTATGCGTCA 58.180 45.000 0.00 0.00 45.47 4.35
179 180 0.726827 CGATGCAACAACCTATGCGT 59.273 50.000 0.00 0.00 45.47 5.24
180 181 1.006086 TCGATGCAACAACCTATGCG 58.994 50.000 0.00 0.00 45.47 4.73
181 182 2.677836 TCTTCGATGCAACAACCTATGC 59.322 45.455 0.00 0.00 42.86 3.14
182 183 4.024556 GGATCTTCGATGCAACAACCTATG 60.025 45.833 0.00 0.00 0.00 2.23
183 184 4.130118 GGATCTTCGATGCAACAACCTAT 58.870 43.478 0.00 0.00 0.00 2.57
184 185 3.055458 TGGATCTTCGATGCAACAACCTA 60.055 43.478 0.00 0.00 0.00 3.08
185 186 2.290260 TGGATCTTCGATGCAACAACCT 60.290 45.455 0.00 0.00 0.00 3.50
186 187 2.083774 TGGATCTTCGATGCAACAACC 58.916 47.619 0.00 0.00 0.00 3.77
187 188 3.002791 TCTGGATCTTCGATGCAACAAC 58.997 45.455 0.00 0.00 0.00 3.32
188 189 3.333029 TCTGGATCTTCGATGCAACAA 57.667 42.857 0.00 0.00 0.00 2.83
189 190 3.548745 ATCTGGATCTTCGATGCAACA 57.451 42.857 0.00 0.00 0.00 3.33
190 191 3.993081 CCTATCTGGATCTTCGATGCAAC 59.007 47.826 0.00 0.00 38.35 4.17
191 192 3.897505 TCCTATCTGGATCTTCGATGCAA 59.102 43.478 0.00 0.00 40.56 4.08
192 193 3.500343 TCCTATCTGGATCTTCGATGCA 58.500 45.455 0.00 0.00 40.56 3.96
193 194 3.119173 CCTCCTATCTGGATCTTCGATGC 60.119 52.174 0.00 0.00 45.16 3.91
194 195 4.085733 ACCTCCTATCTGGATCTTCGATG 58.914 47.826 0.00 0.00 45.16 3.84
195 196 4.202620 TGACCTCCTATCTGGATCTTCGAT 60.203 45.833 0.00 0.00 45.16 3.59
196 197 3.138468 TGACCTCCTATCTGGATCTTCGA 59.862 47.826 0.00 0.00 45.16 3.71
197 198 3.491342 TGACCTCCTATCTGGATCTTCG 58.509 50.000 0.00 0.00 45.16 3.79
198 199 4.837860 ACATGACCTCCTATCTGGATCTTC 59.162 45.833 0.00 0.00 45.16 2.87
199 200 4.825445 ACATGACCTCCTATCTGGATCTT 58.175 43.478 0.00 0.00 45.16 2.40
200 201 4.484026 ACATGACCTCCTATCTGGATCT 57.516 45.455 0.00 0.00 45.16 2.75
201 202 5.559148 AAACATGACCTCCTATCTGGATC 57.441 43.478 0.00 0.00 45.16 3.36
202 203 7.451731 TTTAAACATGACCTCCTATCTGGAT 57.548 36.000 0.00 0.00 45.16 3.41
203 204 6.884472 TTTAAACATGACCTCCTATCTGGA 57.116 37.500 0.00 0.00 43.86 3.86
204 205 7.995488 AGAATTTAAACATGACCTCCTATCTGG 59.005 37.037 0.00 0.00 37.10 3.86
205 206 8.970859 AGAATTTAAACATGACCTCCTATCTG 57.029 34.615 0.00 0.00 0.00 2.90
206 207 8.772250 TGAGAATTTAAACATGACCTCCTATCT 58.228 33.333 0.00 0.00 0.00 1.98
207 208 8.831550 GTGAGAATTTAAACATGACCTCCTATC 58.168 37.037 0.00 0.00 0.00 2.08
208 209 8.328758 TGTGAGAATTTAAACATGACCTCCTAT 58.671 33.333 0.00 0.00 0.00 2.57
209 210 7.685481 TGTGAGAATTTAAACATGACCTCCTA 58.315 34.615 0.00 0.00 0.00 2.94
210 211 6.542821 TGTGAGAATTTAAACATGACCTCCT 58.457 36.000 0.00 0.00 0.00 3.69
211 212 6.817765 TGTGAGAATTTAAACATGACCTCC 57.182 37.500 0.00 0.00 0.00 4.30
212 213 8.299570 ACATTGTGAGAATTTAAACATGACCTC 58.700 33.333 0.00 0.00 0.00 3.85
213 214 8.181904 ACATTGTGAGAATTTAAACATGACCT 57.818 30.769 0.00 0.00 0.00 3.85
214 215 8.816640 AACATTGTGAGAATTTAAACATGACC 57.183 30.769 0.00 0.00 0.00 4.02
261 262 2.747446 GGCTTCATAGAGTCCGCAAAAA 59.253 45.455 0.00 0.00 0.00 1.94
262 263 2.356135 GGCTTCATAGAGTCCGCAAAA 58.644 47.619 0.00 0.00 0.00 2.44
263 264 1.406887 GGGCTTCATAGAGTCCGCAAA 60.407 52.381 0.00 0.00 30.61 3.68
264 265 0.178068 GGGCTTCATAGAGTCCGCAA 59.822 55.000 0.00 0.00 30.61 4.85
265 266 0.975556 TGGGCTTCATAGAGTCCGCA 60.976 55.000 0.00 0.00 44.55 5.69
266 267 0.394565 ATGGGCTTCATAGAGTCCGC 59.605 55.000 0.00 0.00 44.55 5.54
267 268 4.336889 TTTATGGGCTTCATAGAGTCCG 57.663 45.455 0.00 0.00 44.55 4.79
268 269 5.760743 GTCTTTTATGGGCTTCATAGAGTCC 59.239 44.000 0.00 0.00 41.90 3.85
269 270 5.760743 GGTCTTTTATGGGCTTCATAGAGTC 59.239 44.000 0.00 0.00 39.29 3.36
270 271 5.398012 GGGTCTTTTATGGGCTTCATAGAGT 60.398 44.000 0.00 0.00 39.29 3.24
271 272 5.066593 GGGTCTTTTATGGGCTTCATAGAG 58.933 45.833 0.00 0.00 39.29 2.43
272 273 4.476846 TGGGTCTTTTATGGGCTTCATAGA 59.523 41.667 0.00 0.00 39.29 1.98
273 274 4.792068 TGGGTCTTTTATGGGCTTCATAG 58.208 43.478 0.00 0.00 39.29 2.23
274 275 4.871871 TGGGTCTTTTATGGGCTTCATA 57.128 40.909 0.00 0.00 37.30 2.15
275 276 3.756082 TGGGTCTTTTATGGGCTTCAT 57.244 42.857 0.00 0.00 39.78 2.57
276 277 3.631250 GATGGGTCTTTTATGGGCTTCA 58.369 45.455 0.00 0.00 0.00 3.02
277 278 2.618709 CGATGGGTCTTTTATGGGCTTC 59.381 50.000 0.00 0.00 0.00 3.86
278 279 2.241176 TCGATGGGTCTTTTATGGGCTT 59.759 45.455 0.00 0.00 0.00 4.35
279 280 1.843851 TCGATGGGTCTTTTATGGGCT 59.156 47.619 0.00 0.00 0.00 5.19
280 281 2.341846 TCGATGGGTCTTTTATGGGC 57.658 50.000 0.00 0.00 0.00 5.36
281 282 4.887071 TCATTTCGATGGGTCTTTTATGGG 59.113 41.667 0.00 0.00 0.00 4.00
282 283 6.449635 TTCATTTCGATGGGTCTTTTATGG 57.550 37.500 0.00 0.00 0.00 2.74
283 284 7.489113 CCTTTTCATTTCGATGGGTCTTTTATG 59.511 37.037 0.00 0.00 0.00 1.90
284 285 7.396055 TCCTTTTCATTTCGATGGGTCTTTTAT 59.604 33.333 0.00 0.00 0.00 1.40
285 286 6.717540 TCCTTTTCATTTCGATGGGTCTTTTA 59.282 34.615 0.00 0.00 0.00 1.52
286 287 5.538433 TCCTTTTCATTTCGATGGGTCTTTT 59.462 36.000 0.00 0.00 0.00 2.27
287 288 5.048013 GTCCTTTTCATTTCGATGGGTCTTT 60.048 40.000 0.00 0.00 0.00 2.52
288 289 4.459337 GTCCTTTTCATTTCGATGGGTCTT 59.541 41.667 0.00 0.00 0.00 3.01
289 290 4.010349 GTCCTTTTCATTTCGATGGGTCT 58.990 43.478 0.00 0.00 0.00 3.85
290 291 4.010349 AGTCCTTTTCATTTCGATGGGTC 58.990 43.478 0.00 0.00 0.00 4.46
291 292 3.758554 CAGTCCTTTTCATTTCGATGGGT 59.241 43.478 0.00 0.00 0.00 4.51
292 293 4.009675 TCAGTCCTTTTCATTTCGATGGG 58.990 43.478 0.00 0.00 0.00 4.00
293 294 5.393962 GTTCAGTCCTTTTCATTTCGATGG 58.606 41.667 0.00 0.00 0.00 3.51
294 295 5.048782 TGGTTCAGTCCTTTTCATTTCGATG 60.049 40.000 0.00 0.00 0.00 3.84
295 296 5.070001 TGGTTCAGTCCTTTTCATTTCGAT 58.930 37.500 0.00 0.00 0.00 3.59
296 297 4.456535 TGGTTCAGTCCTTTTCATTTCGA 58.543 39.130 0.00 0.00 0.00 3.71
297 298 4.829064 TGGTTCAGTCCTTTTCATTTCG 57.171 40.909 0.00 0.00 0.00 3.46
298 299 5.753438 GGTTTGGTTCAGTCCTTTTCATTTC 59.247 40.000 0.00 0.00 0.00 2.17
299 300 5.188751 TGGTTTGGTTCAGTCCTTTTCATTT 59.811 36.000 0.00 0.00 0.00 2.32
300 301 4.714308 TGGTTTGGTTCAGTCCTTTTCATT 59.286 37.500 0.00 0.00 0.00 2.57
301 302 4.285863 TGGTTTGGTTCAGTCCTTTTCAT 58.714 39.130 0.00 0.00 0.00 2.57
302 303 3.702792 TGGTTTGGTTCAGTCCTTTTCA 58.297 40.909 0.00 0.00 0.00 2.69
303 304 4.401202 TCTTGGTTTGGTTCAGTCCTTTTC 59.599 41.667 0.00 0.00 0.00 2.29
304 305 4.349365 TCTTGGTTTGGTTCAGTCCTTTT 58.651 39.130 0.00 0.00 0.00 2.27
305 306 3.976015 TCTTGGTTTGGTTCAGTCCTTT 58.024 40.909 0.00 0.00 0.00 3.11
306 307 3.662759 TCTTGGTTTGGTTCAGTCCTT 57.337 42.857 0.00 0.00 0.00 3.36
307 308 3.662759 TTCTTGGTTTGGTTCAGTCCT 57.337 42.857 0.00 0.00 0.00 3.85
308 309 7.881775 ATATATTCTTGGTTTGGTTCAGTCC 57.118 36.000 0.00 0.00 0.00 3.85
312 313 9.362151 GGGAATATATATTCTTGGTTTGGTTCA 57.638 33.333 26.89 0.00 41.33 3.18
313 314 9.588096 AGGGAATATATATTCTTGGTTTGGTTC 57.412 33.333 26.89 11.40 41.33 3.62
314 315 9.951866 AAGGGAATATATATTCTTGGTTTGGTT 57.048 29.630 26.89 10.48 41.33 3.67
315 316 9.951866 AAAGGGAATATATATTCTTGGTTTGGT 57.048 29.630 26.89 7.69 41.33 3.67
331 332 9.628500 GTTCAGTCCAACTATTAAAGGGAATAT 57.372 33.333 0.00 0.00 0.00 1.28
332 333 8.050930 GGTTCAGTCCAACTATTAAAGGGAATA 58.949 37.037 0.00 0.00 0.00 1.75
333 334 6.890268 GGTTCAGTCCAACTATTAAAGGGAAT 59.110 38.462 0.00 0.00 0.00 3.01
334 335 6.183361 TGGTTCAGTCCAACTATTAAAGGGAA 60.183 38.462 0.00 0.00 34.24 3.97
335 336 5.311121 TGGTTCAGTCCAACTATTAAAGGGA 59.689 40.000 0.00 0.00 34.24 4.20
336 337 5.566469 TGGTTCAGTCCAACTATTAAAGGG 58.434 41.667 0.00 0.00 34.24 3.95
337 338 7.368059 GTTTGGTTCAGTCCAACTATTAAAGG 58.632 38.462 0.00 0.00 45.60 3.11
338 339 7.013846 TGGTTTGGTTCAGTCCAACTATTAAAG 59.986 37.037 0.00 0.00 45.60 1.85
339 340 6.834451 TGGTTTGGTTCAGTCCAACTATTAAA 59.166 34.615 0.00 0.00 45.60 1.52
340 341 6.366340 TGGTTTGGTTCAGTCCAACTATTAA 58.634 36.000 0.00 0.00 45.60 1.40
341 342 5.942961 TGGTTTGGTTCAGTCCAACTATTA 58.057 37.500 0.00 0.00 45.60 0.98
342 343 4.798882 TGGTTTGGTTCAGTCCAACTATT 58.201 39.130 0.00 0.00 45.60 1.73
343 344 4.447138 TGGTTTGGTTCAGTCCAACTAT 57.553 40.909 0.00 0.00 45.60 2.12
344 345 3.935818 TGGTTTGGTTCAGTCCAACTA 57.064 42.857 0.00 0.00 45.60 2.24
345 346 2.818751 TGGTTTGGTTCAGTCCAACT 57.181 45.000 0.00 0.00 45.60 3.16
346 347 3.020984 TCTTGGTTTGGTTCAGTCCAAC 58.979 45.455 0.00 0.00 45.60 3.77
347 348 3.374042 TCTTGGTTTGGTTCAGTCCAA 57.626 42.857 0.00 0.00 44.48 3.53
348 349 3.374042 TTCTTGGTTTGGTTCAGTCCA 57.626 42.857 0.00 0.00 35.49 4.02
349 350 4.217767 GGTATTCTTGGTTTGGTTCAGTCC 59.782 45.833 0.00 0.00 0.00 3.85
350 351 5.070685 AGGTATTCTTGGTTTGGTTCAGTC 58.929 41.667 0.00 0.00 0.00 3.51
351 352 5.061721 AGGTATTCTTGGTTTGGTTCAGT 57.938 39.130 0.00 0.00 0.00 3.41
352 353 7.148069 GGAATAGGTATTCTTGGTTTGGTTCAG 60.148 40.741 9.13 0.00 41.33 3.02
353 354 6.661805 GGAATAGGTATTCTTGGTTTGGTTCA 59.338 38.462 9.13 0.00 41.33 3.18
354 355 6.096423 GGGAATAGGTATTCTTGGTTTGGTTC 59.904 42.308 9.13 0.00 41.33 3.62
355 356 5.955959 GGGAATAGGTATTCTTGGTTTGGTT 59.044 40.000 9.13 0.00 41.33 3.67
356 357 5.255443 AGGGAATAGGTATTCTTGGTTTGGT 59.745 40.000 9.13 0.00 41.33 3.67
357 358 5.766590 AGGGAATAGGTATTCTTGGTTTGG 58.233 41.667 9.13 0.00 41.33 3.28
358 359 7.718334 AAAGGGAATAGGTATTCTTGGTTTG 57.282 36.000 9.13 0.00 41.33 2.93
385 386 9.472361 GCGTGATTTCATTTTCTATACCTACTA 57.528 33.333 0.00 0.00 0.00 1.82
386 387 7.441458 GGCGTGATTTCATTTTCTATACCTACT 59.559 37.037 0.00 0.00 0.00 2.57
387 388 7.568861 CGGCGTGATTTCATTTTCTATACCTAC 60.569 40.741 0.00 0.00 0.00 3.18
388 389 6.422701 CGGCGTGATTTCATTTTCTATACCTA 59.577 38.462 0.00 0.00 0.00 3.08
389 390 5.236478 CGGCGTGATTTCATTTTCTATACCT 59.764 40.000 0.00 0.00 0.00 3.08
390 391 5.235616 TCGGCGTGATTTCATTTTCTATACC 59.764 40.000 6.85 0.00 0.00 2.73
391 392 6.281848 TCGGCGTGATTTCATTTTCTATAC 57.718 37.500 6.85 0.00 0.00 1.47
392 393 8.596271 TTATCGGCGTGATTTCATTTTCTATA 57.404 30.769 6.85 0.00 38.57 1.31
393 394 7.490962 TTATCGGCGTGATTTCATTTTCTAT 57.509 32.000 6.85 0.00 38.57 1.98
394 395 6.912203 TTATCGGCGTGATTTCATTTTCTA 57.088 33.333 6.85 0.00 38.57 2.10
395 396 5.811399 TTATCGGCGTGATTTCATTTTCT 57.189 34.783 6.85 0.00 38.57 2.52
396 397 5.108254 GCATTATCGGCGTGATTTCATTTTC 60.108 40.000 6.85 0.00 38.57 2.29
411 412 2.151202 AGGTTTATGGCGCATTATCGG 58.849 47.619 10.83 0.00 0.00 4.18
412 413 3.896648 AAGGTTTATGGCGCATTATCG 57.103 42.857 10.83 0.00 0.00 2.92
495 496 1.084018 AGGGGGCAGGATTGAAGAAA 58.916 50.000 0.00 0.00 0.00 2.52
512 513 2.393271 ACTCCGATGCAAGAAGAAGG 57.607 50.000 0.00 0.00 0.00 3.46
546 547 0.179265 GCGCTCGCAATGTATCATCG 60.179 55.000 9.59 0.00 41.49 3.84
755 778 6.261158 GGATTGAGGTGACTAAAAATAGGCTC 59.739 42.308 0.00 0.00 44.43 4.70
871 895 4.567959 TGTGTCATTCATCACAATAGAGCG 59.432 41.667 0.00 0.00 40.81 5.03
891 915 8.175069 ACTCGTTAATGCATTACAACTATTGTG 58.825 33.333 18.70 7.98 45.03 3.33
898 922 9.549509 TTAAATGACTCGTTAATGCATTACAAC 57.450 29.630 18.70 15.47 0.00 3.32
950 974 0.463116 GATGACGGCCGGGTACAATT 60.463 55.000 31.76 4.91 0.00 2.32
970 994 2.843701 ACTTTCTTCTGCTGTGTGGAG 58.156 47.619 0.00 0.00 35.26 3.86
979 1003 4.568152 TGGTTGCTAAACTTTCTTCTGC 57.432 40.909 0.00 0.00 36.48 4.26
1063 1087 2.966708 CGAAAGTTGAAGCATGAACACG 59.033 45.455 0.00 0.00 0.00 4.49
1143 1185 4.325204 GTGCATGCACAGTAACAATGAATG 59.675 41.667 39.12 0.00 45.53 2.67
1245 1287 1.376609 AAATCGCATCGGTGGAAGGC 61.377 55.000 0.00 0.00 0.00 4.35
1406 1448 0.178767 TCCGTTGATGCATCCTCTGG 59.821 55.000 23.67 18.52 0.00 3.86
1479 1521 9.774071 AGGATGCTTTATTAATATAAGGCCATT 57.226 29.630 5.01 0.00 44.40 3.16
1480 1522 9.413734 GAGGATGCTTTATTAATATAAGGCCAT 57.586 33.333 5.01 0.00 44.40 4.40
1481 1523 8.614814 AGAGGATGCTTTATTAATATAAGGCCA 58.385 33.333 5.01 0.00 44.40 5.36
1503 1545 5.096443 ACAAGATCCTAGCAAAAGAGAGG 57.904 43.478 0.00 0.00 0.00 3.69
1598 1645 4.546829 TGGTTGTTCTACTGTATCACCC 57.453 45.455 0.00 0.00 0.00 4.61
1655 1702 9.784680 GTCGTGAATTGATCTCTAACTTTACTA 57.215 33.333 0.00 0.00 0.00 1.82
1656 1703 7.485277 CGTCGTGAATTGATCTCTAACTTTACT 59.515 37.037 0.00 0.00 0.00 2.24
1657 1704 7.253684 CCGTCGTGAATTGATCTCTAACTTTAC 60.254 40.741 0.00 0.00 0.00 2.01
1706 1753 9.624697 TTCATTAATGGAAATTTTCACTCTTCG 57.375 29.630 15.36 0.00 0.00 3.79
1788 1835 7.535940 CGGTTTTCGTTTTTGTGATACATGTAT 59.464 33.333 18.31 18.31 0.00 2.29
1813 1860 7.742525 TGTATTTCGTTAATTTGATGTGTGTCG 59.257 33.333 0.00 0.00 0.00 4.35
1814 1861 8.942669 TGTATTTCGTTAATTTGATGTGTGTC 57.057 30.769 0.00 0.00 0.00 3.67
1815 1862 8.020819 CCTGTATTTCGTTAATTTGATGTGTGT 58.979 33.333 0.00 0.00 0.00 3.72
1816 1863 8.233868 TCCTGTATTTCGTTAATTTGATGTGTG 58.766 33.333 0.00 0.00 0.00 3.82
1921 1968 2.448453 CCTCCGTACTCTCCTTCTTGT 58.552 52.381 0.00 0.00 0.00 3.16
1922 1969 1.135333 GCCTCCGTACTCTCCTTCTTG 59.865 57.143 0.00 0.00 0.00 3.02
2145 2192 2.932187 GCTTTGCCAATAAGCCCTTGTG 60.932 50.000 0.00 0.00 41.62 3.33
2210 2257 3.643081 TCCCCCTCCATTCCCCCA 61.643 66.667 0.00 0.00 0.00 4.96
2227 2274 3.507411 TGCTAATCCGGCCTATAAGACT 58.493 45.455 0.00 0.00 0.00 3.24
2237 2284 1.669437 GCTAGCCTGCTAATCCGGC 60.669 63.158 2.29 0.00 44.09 6.13
2262 2309 0.104672 TCTTCAACCTCTGACCCCCA 60.105 55.000 0.00 0.00 32.21 4.96
2312 2359 0.791983 CACGCACGTACGTAGACAGG 60.792 60.000 22.34 8.75 46.34 4.00
2315 2362 0.795735 ATGCACGCACGTACGTAGAC 60.796 55.000 22.34 12.54 46.34 2.59
2318 2365 0.167689 TACATGCACGCACGTACGTA 59.832 50.000 22.34 4.43 46.34 3.57
2320 2367 1.339134 GTACATGCACGCACGTACG 59.661 57.895 15.01 15.01 36.21 3.67
2321 2368 1.339134 CGTACATGCACGCACGTAC 59.661 57.895 16.23 16.23 40.75 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.