Multiple sequence alignment - TraesCS7A01G213400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G213400 chr7A 100.000 2949 0 0 1 2949 177135007 177137955 0.000000e+00 5446.0
1 TraesCS7A01G213400 chr7A 93.266 297 18 1 2205 2499 167863620 167863324 1.260000e-118 436.0
2 TraesCS7A01G213400 chr7D 94.317 1091 47 7 817 1899 174992275 174993358 0.000000e+00 1657.0
3 TraesCS7A01G213400 chr7D 87.674 430 45 5 425 850 174991849 174992274 7.340000e-136 494.0
4 TraesCS7A01G213400 chr7D 87.532 385 33 9 2571 2948 174993779 174994155 5.840000e-117 431.0
5 TraesCS7A01G213400 chr7D 98.113 106 2 0 2506 2611 174993755 174993860 5.020000e-43 185.0
6 TraesCS7A01G213400 chr7D 84.000 125 6 2 2099 2209 174993634 174993758 1.120000e-19 108.0
7 TraesCS7A01G213400 chr7D 93.548 62 3 1 1967 2027 174993478 174993539 1.130000e-14 91.6
8 TraesCS7A01G213400 chr7B 92.257 904 48 11 1010 1903 140652767 140653658 0.000000e+00 1262.0
9 TraesCS7A01G213400 chr7B 91.148 418 27 8 558 968 140652356 140652770 2.570000e-155 558.0
10 TraesCS7A01G213400 chr7B 85.615 431 52 9 1 429 140651795 140652217 7.500000e-121 444.0
11 TraesCS7A01G213400 chr7B 85.920 348 37 8 2571 2910 140654062 140654405 7.770000e-96 361.0
12 TraesCS7A01G213400 chr7B 96.226 106 4 0 2506 2611 140654038 140654143 1.090000e-39 174.0
13 TraesCS7A01G213400 chr7B 83.200 125 7 2 2099 2209 140653917 140654041 5.200000e-18 102.0
14 TraesCS7A01G213400 chr5A 93.857 293 16 1 2209 2499 353070425 353070133 9.700000e-120 440.0
15 TraesCS7A01G213400 chr5A 85.492 193 26 2 1119 1309 594770972 594771164 1.790000e-47 200.0
16 TraesCS7A01G213400 chr1A 93.857 293 16 1 2209 2499 204830595 204830303 9.700000e-120 440.0
17 TraesCS7A01G213400 chr2A 94.097 288 17 0 2207 2494 118486473 118486760 3.490000e-119 438.0
18 TraesCS7A01G213400 chr2A 93.814 291 18 0 2204 2494 597847809 597848099 3.490000e-119 438.0
19 TraesCS7A01G213400 chr2A 93.793 290 18 0 2205 2494 771545620 771545909 1.260000e-118 436.0
20 TraesCS7A01G213400 chr2A 93.243 296 18 1 2206 2499 698086609 698086314 4.510000e-118 435.0
21 TraesCS7A01G213400 chr2A 89.326 178 19 0 1138 1315 35975995 35976172 1.060000e-54 224.0
22 TraesCS7A01G213400 chr6A 93.793 290 18 0 2205 2494 410575449 410575738 1.260000e-118 436.0
23 TraesCS7A01G213400 chr6A 94.340 159 9 0 1157 1315 520355711 520355553 8.160000e-61 244.0
24 TraesCS7A01G213400 chr3A 92.484 306 22 1 2205 2509 583228904 583229209 1.260000e-118 436.0
25 TraesCS7A01G213400 chr6D 93.711 159 10 0 1157 1315 378379441 378379283 3.800000e-59 239.0
26 TraesCS7A01G213400 chr2D 89.888 178 18 0 1138 1315 32763250 32763427 2.290000e-56 230.0
27 TraesCS7A01G213400 chr2B 89.888 178 18 0 1138 1315 54440318 54440495 2.290000e-56 230.0
28 TraesCS7A01G213400 chr6B 92.453 159 12 0 1157 1315 564993599 564993441 8.220000e-56 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G213400 chr7A 177135007 177137955 2948 False 5446.000000 5446 100.000 1 2949 1 chr7A.!!$F1 2948
1 TraesCS7A01G213400 chr7D 174991849 174994155 2306 False 494.433333 1657 90.864 425 2948 6 chr7D.!!$F1 2523
2 TraesCS7A01G213400 chr7B 140651795 140654405 2610 False 483.500000 1262 89.061 1 2910 6 chr7B.!!$F1 2909


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 371 0.099613 AAACAACACAACGATGCGCA 59.9 45.0 14.96 14.96 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2395 0.463833 GGCCTTAGTTGCGTATGCCT 60.464 55.0 4.05 0.0 41.78 4.75 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.568685 TTCACCAAGTTCGTCATTTTTGA 57.431 34.783 0.00 0.00 0.00 2.69
25 26 5.802956 TCACCAAGTTCGTCATTTTTGAAAC 59.197 36.000 0.00 0.00 0.00 2.78
26 27 5.804979 CACCAAGTTCGTCATTTTTGAAACT 59.195 36.000 0.00 0.00 0.00 2.66
27 28 6.020678 CACCAAGTTCGTCATTTTTGAAACTC 60.021 38.462 0.00 0.00 0.00 3.01
30 31 4.887655 AGTTCGTCATTTTTGAAACTCCCT 59.112 37.500 0.00 0.00 0.00 4.20
31 32 5.008712 AGTTCGTCATTTTTGAAACTCCCTC 59.991 40.000 0.00 0.00 0.00 4.30
35 36 5.858581 CGTCATTTTTGAAACTCCCTCAATC 59.141 40.000 0.00 0.00 32.98 2.67
36 37 5.858581 GTCATTTTTGAAACTCCCTCAATCG 59.141 40.000 0.00 0.00 32.98 3.34
39 40 6.648879 TTTTTGAAACTCCCTCAATCGATT 57.351 33.333 4.39 4.39 32.98 3.34
40 41 7.753309 TTTTTGAAACTCCCTCAATCGATTA 57.247 32.000 10.97 0.00 32.98 1.75
42 43 5.023533 TGAAACTCCCTCAATCGATTAGG 57.976 43.478 10.97 16.22 0.00 2.69
49 50 3.627577 CCCTCAATCGATTAGGGTGTTTG 59.372 47.826 27.68 11.87 44.34 2.93
50 51 4.261801 CCTCAATCGATTAGGGTGTTTGT 58.738 43.478 10.97 0.00 0.00 2.83
51 52 4.700213 CCTCAATCGATTAGGGTGTTTGTT 59.300 41.667 10.97 0.00 0.00 2.83
53 54 6.249035 TCAATCGATTAGGGTGTTTGTTTC 57.751 37.500 10.97 0.00 0.00 2.78
54 55 4.939509 ATCGATTAGGGTGTTTGTTTCG 57.060 40.909 0.00 0.00 0.00 3.46
55 56 3.068560 TCGATTAGGGTGTTTGTTTCGG 58.931 45.455 0.00 0.00 0.00 4.30
56 57 2.160813 CGATTAGGGTGTTTGTTTCGGG 59.839 50.000 0.00 0.00 0.00 5.14
73 74 4.981806 TCGGGATTTGGTTCATGATTTC 57.018 40.909 0.00 0.00 0.00 2.17
80 81 3.694043 TGGTTCATGATTTCGACTGGA 57.306 42.857 0.00 0.00 0.00 3.86
85 86 6.093495 TGGTTCATGATTTCGACTGGATTAAC 59.907 38.462 0.00 0.00 0.00 2.01
105 107 7.899178 TTAACGACTTCTGAAATCAATAGCA 57.101 32.000 0.00 0.00 0.00 3.49
124 126 3.509967 AGCAGCAACCACCCTATAAAAAC 59.490 43.478 0.00 0.00 0.00 2.43
130 132 6.722129 AGCAACCACCCTATAAAAACACATTA 59.278 34.615 0.00 0.00 0.00 1.90
136 138 9.418045 CCACCCTATAAAAACACATTAACAAAG 57.582 33.333 0.00 0.00 0.00 2.77
148 150 7.257722 ACACATTAACAAAGAAGAAACACTGG 58.742 34.615 0.00 0.00 0.00 4.00
174 176 7.023575 GGCATTATAGCAACAATATAGTGCAC 58.976 38.462 9.40 9.40 44.39 4.57
183 185 6.542852 CAACAATATAGTGCACACAACTACC 58.457 40.000 21.04 0.00 0.00 3.18
187 189 0.180171 AGTGCACACAACTACCAGCA 59.820 50.000 21.04 0.00 0.00 4.41
198 200 6.204882 ACACAACTACCAGCATAAGAAACTTC 59.795 38.462 0.00 0.00 0.00 3.01
199 201 5.705905 ACAACTACCAGCATAAGAAACTTCC 59.294 40.000 0.00 0.00 0.00 3.46
202 204 5.724854 ACTACCAGCATAAGAAACTTCCCTA 59.275 40.000 0.00 0.00 0.00 3.53
208 210 7.047891 CAGCATAAGAAACTTCCCTACATACA 58.952 38.462 0.00 0.00 0.00 2.29
209 211 7.011482 CAGCATAAGAAACTTCCCTACATACAC 59.989 40.741 0.00 0.00 0.00 2.90
214 216 6.180472 AGAAACTTCCCTACATACACATTGG 58.820 40.000 0.00 0.00 0.00 3.16
260 262 2.368548 ACATTTTCAGAAAAGGCCCACC 59.631 45.455 18.11 0.00 35.71 4.61
266 268 3.850752 TCAGAAAAGGCCCACCAAAATA 58.149 40.909 0.00 0.00 39.06 1.40
304 306 6.542821 AGAAAACACACTCAATTATCTCCCA 58.457 36.000 0.00 0.00 0.00 4.37
317 319 0.539438 TCTCCCACACATGCCAAACC 60.539 55.000 0.00 0.00 0.00 3.27
324 326 3.380142 CACACATGCCAAACCAAGTAAC 58.620 45.455 0.00 0.00 0.00 2.50
330 332 5.757808 ACATGCCAAACCAAGTAACATTTTC 59.242 36.000 0.00 0.00 0.00 2.29
331 333 4.363999 TGCCAAACCAAGTAACATTTTCG 58.636 39.130 0.00 0.00 0.00 3.46
332 334 4.142138 TGCCAAACCAAGTAACATTTTCGT 60.142 37.500 0.00 0.00 0.00 3.85
341 343 7.960738 ACCAAGTAACATTTTCGTATGAAATCG 59.039 33.333 10.85 7.76 43.32 3.34
352 354 6.301687 TCGTATGAAATCGAAAACACCAAA 57.698 33.333 0.00 0.00 33.13 3.28
356 358 6.582437 ATGAAATCGAAAACACCAAACAAC 57.418 33.333 0.00 0.00 0.00 3.32
357 359 5.470368 TGAAATCGAAAACACCAAACAACA 58.530 33.333 0.00 0.00 0.00 3.33
361 363 3.982058 TCGAAAACACCAAACAACACAAC 59.018 39.130 0.00 0.00 0.00 3.32
364 366 3.859411 AACACCAAACAACACAACGAT 57.141 38.095 0.00 0.00 0.00 3.73
365 367 3.143807 ACACCAAACAACACAACGATG 57.856 42.857 0.00 0.00 0.00 3.84
367 369 1.119635 CCAAACAACACAACGATGCG 58.880 50.000 0.00 0.00 0.00 4.73
369 371 0.099613 AAACAACACAACGATGCGCA 59.900 45.000 14.96 14.96 0.00 6.09
382 384 1.847798 ATGCGCACCCAACCCTTCTA 61.848 55.000 14.90 0.00 0.00 2.10
390 392 5.123936 GCACCCAACCCTTCTAGTAATAAG 58.876 45.833 0.00 0.00 0.00 1.73
450 452 3.272581 TGGATGCTCACATACACACATG 58.727 45.455 0.00 0.00 42.46 3.21
462 464 5.926542 ACATACACACATGTACACTCACTTC 59.073 40.000 0.00 0.00 44.11 3.01
470 472 4.137849 TGTACACTCACTTCTACGAACG 57.862 45.455 0.00 0.00 0.00 3.95
490 492 0.528466 CGCTCGCACACACCATATCT 60.528 55.000 0.00 0.00 0.00 1.98
506 508 0.976641 ATCTTGTGAGCACCTCCGAA 59.023 50.000 0.00 0.00 0.00 4.30
507 509 0.318441 TCTTGTGAGCACCTCCGAAG 59.682 55.000 0.00 0.00 0.00 3.79
516 518 0.903454 CACCTCCGAAGTACTGGGGT 60.903 60.000 12.07 5.53 31.46 4.95
527 529 1.272212 GTACTGGGGTGCCACAAAATG 59.728 52.381 0.00 0.00 0.00 2.32
530 532 1.967066 CTGGGGTGCCACAAAATGTTA 59.033 47.619 0.00 0.00 0.00 2.41
607 651 6.404623 CCACTGAACAAACATTGTGAGAAAGA 60.405 38.462 0.00 0.00 44.59 2.52
608 652 7.198390 CACTGAACAAACATTGTGAGAAAGAT 58.802 34.615 0.00 0.00 44.59 2.40
653 698 5.367937 ACACTATCAATGCCAAGTCTAGGAT 59.632 40.000 0.00 0.00 0.00 3.24
680 725 4.730949 TCCTGGTAGACTAATTTCACCG 57.269 45.455 0.00 0.00 31.64 4.94
698 746 1.821216 CGCAAGGAACCTAACCATGT 58.179 50.000 0.00 0.00 0.00 3.21
768 822 2.160205 TGGACGTGTGTTCCACAAAAA 58.840 42.857 0.00 0.00 46.28 1.94
850 938 2.444895 CGGGGAGGAAGAGGGAGG 60.445 72.222 0.00 0.00 0.00 4.30
895 985 0.534412 CCGCTTCTGTGATGGAGAGT 59.466 55.000 0.00 0.00 0.00 3.24
1023 1116 2.437359 AAGCATCCTGAGGCACGC 60.437 61.111 6.56 0.00 41.13 5.34
1057 1150 1.001764 CATGCAGGAGTTCCAGCCA 60.002 57.895 12.30 2.47 46.58 4.75
1061 1154 1.372087 GCAGGAGTTCCAGCCAATCG 61.372 60.000 4.34 0.00 42.01 3.34
1114 1210 4.918201 GAATCGGCGGGCCTCCTG 62.918 72.222 11.46 4.54 0.00 3.86
1359 1461 2.143594 GACAAGGACGTCTCCAGCGT 62.144 60.000 16.46 4.52 45.86 5.07
1365 1467 3.715854 ACGTCTCCAGCGTCAATAC 57.284 52.632 0.00 0.00 38.23 1.89
1392 1494 3.482783 GAACGCACGCTCTGGCTC 61.483 66.667 0.00 0.00 36.09 4.70
1424 1526 3.775654 CCAGCCTCACCTCCGGTC 61.776 72.222 0.00 0.00 31.02 4.79
1506 1608 3.777925 CGGAAGCACGCCGTTCAG 61.778 66.667 0.00 0.00 43.66 3.02
1534 1636 2.703798 CCCAAGCACCTTCATGGCG 61.704 63.158 0.00 0.00 40.22 5.69
1631 1733 1.741770 CTTCCGGCCTTCACCTTCG 60.742 63.158 0.00 0.00 0.00 3.79
1688 1790 1.068281 CAGTCACACTCACAGAGCAGT 59.932 52.381 0.00 0.00 32.04 4.40
1715 1817 2.338620 CGACTTCCACCGCAGACA 59.661 61.111 0.00 0.00 0.00 3.41
1719 1821 1.003355 CTTCCACCGCAGACATGGT 60.003 57.895 0.00 0.00 39.66 3.55
1774 1876 2.285773 ATCAGCGTCAGACTGGCCA 61.286 57.895 4.71 4.71 35.78 5.36
1808 1910 1.372623 GACGCCGGGATATTCGACC 60.373 63.158 2.18 0.00 0.00 4.79
1959 2096 2.159338 TGTCTAATCGTAACCACCGCTC 60.159 50.000 0.00 0.00 0.00 5.03
2006 2162 1.453235 AGCTTGGCTGCTTCTGTGA 59.547 52.632 0.00 0.00 40.93 3.58
2014 2170 2.159599 GGCTGCTTCTGTGATTCTTTCG 60.160 50.000 0.00 0.00 0.00 3.46
2027 2183 2.286365 TCTTTCGATGGGGCAGTTTT 57.714 45.000 0.00 0.00 0.00 2.43
2028 2184 2.593026 TCTTTCGATGGGGCAGTTTTT 58.407 42.857 0.00 0.00 0.00 1.94
2029 2185 2.295909 TCTTTCGATGGGGCAGTTTTTG 59.704 45.455 0.00 0.00 0.00 2.44
2054 2210 5.234757 CACACTTGTGCAAAGCAAATTATGT 59.765 36.000 0.10 0.00 41.47 2.29
2064 2220 6.183359 GCAAAGCAAATTATGTCTGAACTTCG 60.183 38.462 0.00 0.00 0.00 3.79
2065 2221 5.551760 AGCAAATTATGTCTGAACTTCGG 57.448 39.130 0.00 0.00 0.00 4.30
2071 2227 9.840427 CAAATTATGTCTGAACTTCGGTTTAAT 57.160 29.630 0.00 0.00 38.41 1.40
2196 2398 8.090831 TCTATATATCTTTGTCATGACACAGGC 58.909 37.037 31.64 6.94 41.67 4.85
2197 2399 2.636647 TCTTTGTCATGACACAGGCA 57.363 45.000 31.64 17.38 41.67 4.75
2198 2400 3.144657 TCTTTGTCATGACACAGGCAT 57.855 42.857 31.64 0.00 41.67 4.40
2199 2401 4.284829 TCTTTGTCATGACACAGGCATA 57.715 40.909 31.64 16.48 41.67 3.14
2200 2402 4.002982 TCTTTGTCATGACACAGGCATAC 58.997 43.478 31.64 4.77 41.67 2.39
2202 2404 0.652592 GTCATGACACAGGCATACGC 59.347 55.000 21.07 0.00 37.44 4.42
2203 2405 0.248843 TCATGACACAGGCATACGCA 59.751 50.000 0.00 0.00 41.24 5.24
2204 2406 1.085893 CATGACACAGGCATACGCAA 58.914 50.000 0.00 0.00 41.24 4.85
2206 2408 0.034756 TGACACAGGCATACGCAACT 59.965 50.000 0.00 0.00 41.24 3.16
2208 2410 2.289133 TGACACAGGCATACGCAACTAA 60.289 45.455 0.00 0.00 41.24 2.24
2209 2411 2.346803 ACACAGGCATACGCAACTAAG 58.653 47.619 0.00 0.00 41.24 2.18
2210 2412 1.665679 CACAGGCATACGCAACTAAGG 59.334 52.381 0.00 0.00 41.24 2.69
2211 2413 0.657840 CAGGCATACGCAACTAAGGC 59.342 55.000 0.00 0.00 41.24 4.35
2212 2414 0.463833 AGGCATACGCAACTAAGGCC 60.464 55.000 0.00 0.00 41.24 5.19
2213 2415 0.463833 GGCATACGCAACTAAGGCCT 60.464 55.000 0.00 0.00 41.24 5.19
2214 2416 0.938008 GCATACGCAACTAAGGCCTC 59.062 55.000 5.23 0.00 38.36 4.70
2215 2417 1.473434 GCATACGCAACTAAGGCCTCT 60.473 52.381 5.23 0.00 38.36 3.69
2216 2418 2.906354 CATACGCAACTAAGGCCTCTT 58.094 47.619 5.23 0.00 37.03 2.85
2217 2419 3.270877 CATACGCAACTAAGGCCTCTTT 58.729 45.455 5.23 0.00 34.59 2.52
2218 2420 2.271944 ACGCAACTAAGGCCTCTTTT 57.728 45.000 5.23 0.00 34.59 2.27
2219 2421 1.880027 ACGCAACTAAGGCCTCTTTTG 59.120 47.619 5.23 10.78 34.59 2.44
2220 2422 1.200020 CGCAACTAAGGCCTCTTTTGG 59.800 52.381 5.23 0.00 34.59 3.28
2221 2423 2.239400 GCAACTAAGGCCTCTTTTGGT 58.761 47.619 5.23 0.00 34.59 3.67
2222 2424 2.628178 GCAACTAAGGCCTCTTTTGGTT 59.372 45.455 5.23 1.01 34.59 3.67
2223 2425 3.305403 GCAACTAAGGCCTCTTTTGGTTC 60.305 47.826 5.23 0.00 34.59 3.62
2224 2426 3.876309 ACTAAGGCCTCTTTTGGTTCA 57.124 42.857 5.23 0.00 34.59 3.18
2225 2427 4.388577 ACTAAGGCCTCTTTTGGTTCAT 57.611 40.909 5.23 0.00 34.59 2.57
2226 2428 5.514500 ACTAAGGCCTCTTTTGGTTCATA 57.486 39.130 5.23 0.00 34.59 2.15
2227 2429 5.501156 ACTAAGGCCTCTTTTGGTTCATAG 58.499 41.667 5.23 1.44 34.59 2.23
2228 2430 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
2229 2431 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
2230 2432 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
2231 2433 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
2232 2434 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
2233 2435 5.163195 GGCCTCTTTTGGTTCATAGGATAGA 60.163 44.000 0.00 0.00 0.00 1.98
2234 2436 6.357367 GCCTCTTTTGGTTCATAGGATAGAA 58.643 40.000 0.00 0.00 0.00 2.10
2235 2437 7.001073 GCCTCTTTTGGTTCATAGGATAGAAT 58.999 38.462 0.00 0.00 0.00 2.40
2236 2438 7.503902 GCCTCTTTTGGTTCATAGGATAGAATT 59.496 37.037 0.00 0.00 0.00 2.17
2268 2470 9.844257 AGAAATAGGAATCTTGTAGGAAATGAG 57.156 33.333 0.00 0.00 0.00 2.90
2269 2471 9.838339 GAAATAGGAATCTTGTAGGAAATGAGA 57.162 33.333 0.00 0.00 0.00 3.27
2271 2473 9.790344 AATAGGAATCTTGTAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
2272 2474 7.443302 AGGAATCTTGTAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
2273 2475 7.278875 AGGAATCTTGTAGGAAATGAGATGAC 58.721 38.462 0.00 0.00 0.00 3.06
2274 2476 7.050377 GGAATCTTGTAGGAAATGAGATGACA 58.950 38.462 0.00 0.00 0.00 3.58
2275 2477 7.718753 GGAATCTTGTAGGAAATGAGATGACAT 59.281 37.037 0.00 0.00 0.00 3.06
2276 2478 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
2277 2479 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
2278 2480 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
2279 2481 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
2280 2482 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
2281 2483 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
2282 2484 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
2295 2497 5.710646 ACATGTATCTCAGGTCCTATGAGT 58.289 41.667 0.00 0.35 43.79 3.41
2296 2498 6.853490 ACATGTATCTCAGGTCCTATGAGTA 58.147 40.000 0.00 0.00 43.79 2.59
2297 2499 6.945435 ACATGTATCTCAGGTCCTATGAGTAG 59.055 42.308 0.00 0.00 43.79 2.57
2314 2516 9.703892 CTATGAGTAGGAATAGGAAACAAGATG 57.296 37.037 0.00 0.00 0.00 2.90
2315 2517 7.496346 TGAGTAGGAATAGGAAACAAGATGT 57.504 36.000 0.00 0.00 0.00 3.06
2316 2518 7.556844 TGAGTAGGAATAGGAAACAAGATGTC 58.443 38.462 0.00 0.00 0.00 3.06
2317 2519 7.180229 TGAGTAGGAATAGGAAACAAGATGTCA 59.820 37.037 0.00 0.00 0.00 3.58
2318 2520 8.095452 AGTAGGAATAGGAAACAAGATGTCAT 57.905 34.615 0.00 0.00 0.00 3.06
2319 2521 8.552296 AGTAGGAATAGGAAACAAGATGTCATT 58.448 33.333 0.00 0.00 0.00 2.57
2320 2522 9.178758 GTAGGAATAGGAAACAAGATGTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
2321 2523 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
2322 2524 7.123247 AGGAATAGGAAACAAGATGTCATTTGG 59.877 37.037 10.50 0.00 0.00 3.28
2323 2525 7.093771 GGAATAGGAAACAAGATGTCATTTGGT 60.094 37.037 10.50 3.75 0.00 3.67
2324 2526 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
2325 2527 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
2326 2528 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
2327 2529 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
2338 2540 7.951530 GTCATTTGGTTGACATCAAAAGAAT 57.048 32.000 9.65 0.00 44.38 2.40
2339 2541 8.369218 GTCATTTGGTTGACATCAAAAGAATT 57.631 30.769 9.65 0.00 44.38 2.17
2340 2542 8.829612 GTCATTTGGTTGACATCAAAAGAATTT 58.170 29.630 9.65 0.00 44.38 1.82
2363 2565 7.823745 TTTTTCATTGAGTCTAGGCTCTTTT 57.176 32.000 24.20 7.12 36.51 2.27
2364 2566 7.823745 TTTTCATTGAGTCTAGGCTCTTTTT 57.176 32.000 24.20 4.72 36.51 1.94
2393 2595 9.973661 TTTTTCTATGAAATGTGGAGGATAGAA 57.026 29.630 0.00 0.00 32.95 2.10
2394 2596 9.973661 TTTTCTATGAAATGTGGAGGATAGAAA 57.026 29.630 0.00 0.00 39.16 2.52
2395 2597 8.964476 TTCTATGAAATGTGGAGGATAGAAAC 57.036 34.615 0.00 0.00 32.24 2.78
2396 2598 7.509546 TCTATGAAATGTGGAGGATAGAAACC 58.490 38.462 0.00 0.00 0.00 3.27
2397 2599 5.512942 TGAAATGTGGAGGATAGAAACCA 57.487 39.130 0.00 0.00 0.00 3.67
2398 2600 5.886609 TGAAATGTGGAGGATAGAAACCAA 58.113 37.500 0.00 0.00 34.11 3.67
2399 2601 6.493166 TGAAATGTGGAGGATAGAAACCAAT 58.507 36.000 0.00 0.00 34.11 3.16
2400 2602 6.603201 TGAAATGTGGAGGATAGAAACCAATC 59.397 38.462 0.00 0.00 34.11 2.67
2401 2603 4.503714 TGTGGAGGATAGAAACCAATCC 57.496 45.455 0.00 0.00 41.77 3.01
2438 2640 8.474710 AAGAATCCATTCCTATGAATCAAAGG 57.525 34.615 0.00 0.00 39.20 3.11
2439 2641 7.008941 AGAATCCATTCCTATGAATCAAAGGG 58.991 38.462 0.00 0.00 39.20 3.95
2440 2642 4.473444 TCCATTCCTATGAATCAAAGGGC 58.527 43.478 0.00 0.00 39.20 5.19
2441 2643 4.168675 TCCATTCCTATGAATCAAAGGGCT 59.831 41.667 0.00 0.00 39.20 5.19
2442 2644 4.897670 CCATTCCTATGAATCAAAGGGCTT 59.102 41.667 0.00 0.00 39.20 4.35
2443 2645 5.364735 CCATTCCTATGAATCAAAGGGCTTT 59.635 40.000 0.00 0.00 39.20 3.51
2444 2646 6.550854 CCATTCCTATGAATCAAAGGGCTTTA 59.449 38.462 0.00 0.00 39.20 1.85
2445 2647 7.069826 CCATTCCTATGAATCAAAGGGCTTTAA 59.930 37.037 0.00 0.00 39.20 1.52
2446 2648 8.477256 CATTCCTATGAATCAAAGGGCTTTAAA 58.523 33.333 0.00 0.00 39.20 1.52
2447 2649 7.645058 TCCTATGAATCAAAGGGCTTTAAAG 57.355 36.000 11.02 11.02 0.00 1.85
2448 2650 6.607198 TCCTATGAATCAAAGGGCTTTAAAGG 59.393 38.462 16.78 0.00 0.00 3.11
2449 2651 6.607198 CCTATGAATCAAAGGGCTTTAAAGGA 59.393 38.462 16.78 4.87 0.00 3.36
2450 2652 6.933514 ATGAATCAAAGGGCTTTAAAGGAA 57.066 33.333 16.78 0.00 0.00 3.36
2451 2653 6.739331 TGAATCAAAGGGCTTTAAAGGAAA 57.261 33.333 16.78 0.00 0.00 3.13
2452 2654 7.130681 TGAATCAAAGGGCTTTAAAGGAAAA 57.869 32.000 16.78 0.00 0.00 2.29
2453 2655 7.569240 TGAATCAAAGGGCTTTAAAGGAAAAA 58.431 30.769 16.78 0.00 0.00 1.94
2560 2762 0.318120 GGTTGTTGGTTCAGCATGGG 59.682 55.000 0.00 0.00 36.16 4.00
2578 2780 2.029623 GGGCTATGACAACTCGGAGTA 58.970 52.381 11.71 0.00 0.00 2.59
2591 2793 0.974383 CGGAGTAGGAGGTTGTTGGT 59.026 55.000 0.00 0.00 0.00 3.67
2592 2794 1.346722 CGGAGTAGGAGGTTGTTGGTT 59.653 52.381 0.00 0.00 0.00 3.67
2593 2795 2.612221 CGGAGTAGGAGGTTGTTGGTTC 60.612 54.545 0.00 0.00 0.00 3.62
2594 2796 2.370849 GGAGTAGGAGGTTGTTGGTTCA 59.629 50.000 0.00 0.00 0.00 3.18
2595 2797 3.557264 GGAGTAGGAGGTTGTTGGTTCAG 60.557 52.174 0.00 0.00 0.00 3.02
2596 2798 2.152016 GTAGGAGGTTGTTGGTTCAGC 58.848 52.381 0.00 0.00 0.00 4.26
2597 2799 0.846693 AGGAGGTTGTTGGTTCAGCT 59.153 50.000 0.00 0.00 0.00 4.24
2598 2800 1.215423 AGGAGGTTGTTGGTTCAGCTT 59.785 47.619 0.00 0.00 0.00 3.74
2599 2801 1.338020 GGAGGTTGTTGGTTCAGCTTG 59.662 52.381 0.00 0.00 0.00 4.01
2600 2802 1.338020 GAGGTTGTTGGTTCAGCTTGG 59.662 52.381 0.00 0.00 0.00 3.61
2601 2803 0.249447 GGTTGTTGGTTCAGCTTGGC 60.249 55.000 0.00 0.00 0.00 4.52
2602 2804 0.249447 GTTGTTGGTTCAGCTTGGCC 60.249 55.000 0.00 0.00 0.00 5.36
2603 2805 0.396974 TTGTTGGTTCAGCTTGGCCT 60.397 50.000 3.32 0.00 0.00 5.19
2604 2806 0.476338 TGTTGGTTCAGCTTGGCCTA 59.524 50.000 3.32 0.00 0.00 3.93
2605 2807 1.075374 TGTTGGTTCAGCTTGGCCTAT 59.925 47.619 3.32 0.00 0.00 2.57
2606 2808 1.474077 GTTGGTTCAGCTTGGCCTATG 59.526 52.381 3.32 0.00 0.00 2.23
2607 2809 0.991146 TGGTTCAGCTTGGCCTATGA 59.009 50.000 3.32 0.00 0.00 2.15
2608 2810 1.340017 TGGTTCAGCTTGGCCTATGAC 60.340 52.381 3.32 0.00 0.00 3.06
2609 2811 1.340017 GGTTCAGCTTGGCCTATGACA 60.340 52.381 3.32 0.00 0.00 3.58
2610 2812 2.436417 GTTCAGCTTGGCCTATGACAA 58.564 47.619 3.32 0.00 0.00 3.18
2611 2813 2.113860 TCAGCTTGGCCTATGACAAC 57.886 50.000 3.32 0.00 0.00 3.32
2612 2814 1.630369 TCAGCTTGGCCTATGACAACT 59.370 47.619 3.32 0.00 0.00 3.16
2613 2815 2.012673 CAGCTTGGCCTATGACAACTC 58.987 52.381 3.32 0.00 0.00 3.01
2614 2816 1.009829 GCTTGGCCTATGACAACTCG 58.990 55.000 3.32 0.00 0.00 4.18
2615 2817 1.656652 CTTGGCCTATGACAACTCGG 58.343 55.000 3.32 0.00 0.00 4.63
2616 2818 1.207089 CTTGGCCTATGACAACTCGGA 59.793 52.381 3.32 0.00 0.00 4.55
2617 2819 0.824109 TGGCCTATGACAACTCGGAG 59.176 55.000 3.32 2.83 0.00 4.63
2618 2820 0.824759 GGCCTATGACAACTCGGAGT 59.175 55.000 4.45 4.45 0.00 3.85
2619 2821 2.029623 GGCCTATGACAACTCGGAGTA 58.970 52.381 11.71 0.00 0.00 2.59
2620 2822 2.034812 GGCCTATGACAACTCGGAGTAG 59.965 54.545 11.71 3.78 0.00 2.57
2621 2823 2.034812 GCCTATGACAACTCGGAGTAGG 59.965 54.545 11.71 13.76 0.00 3.18
2622 2824 3.552875 CCTATGACAACTCGGAGTAGGA 58.447 50.000 11.71 0.00 31.12 2.94
2623 2825 3.566322 CCTATGACAACTCGGAGTAGGAG 59.434 52.174 11.71 4.84 37.54 3.69
2624 2826 1.835494 TGACAACTCGGAGTAGGAGG 58.165 55.000 11.71 2.06 35.82 4.30
2625 2827 1.075050 TGACAACTCGGAGTAGGAGGT 59.925 52.381 11.71 5.20 35.82 3.85
2627 2829 0.818296 CAACTCGGAGTAGGAGGTGG 59.182 60.000 11.71 0.00 43.82 4.61
2628 2830 0.408700 AACTCGGAGTAGGAGGTGGT 59.591 55.000 11.71 0.00 35.82 4.16
2629 2831 0.408700 ACTCGGAGTAGGAGGTGGTT 59.591 55.000 9.33 0.00 35.82 3.67
2630 2832 0.818296 CTCGGAGTAGGAGGTGGTTG 59.182 60.000 0.00 0.00 0.00 3.77
2631 2833 1.218316 CGGAGTAGGAGGTGGTTGC 59.782 63.158 0.00 0.00 0.00 4.17
2651 2853 2.286872 CTTCAGCTTGGCCTATGACAG 58.713 52.381 3.32 0.69 0.00 3.51
2717 2919 3.482786 CTTTAGCACGACACATTTCTGC 58.517 45.455 0.00 0.00 0.00 4.26
2720 2922 1.151668 GCACGACACATTTCTGCTCT 58.848 50.000 0.00 0.00 0.00 4.09
2736 2938 1.003959 TCTGCGGTGCTGTGCATTA 60.004 52.632 0.00 0.00 41.91 1.90
2748 2950 6.424812 GGTGCTGTGCATTATTTCTTTCTTTT 59.575 34.615 0.00 0.00 41.91 2.27
2750 2952 8.977505 GTGCTGTGCATTATTTCTTTCTTTTTA 58.022 29.630 0.00 0.00 41.91 1.52
2751 2953 9.539825 TGCTGTGCATTATTTCTTTCTTTTTAA 57.460 25.926 0.00 0.00 31.71 1.52
2766 2968 5.636837 TCTTTTTAATTTGAATCGGAGCCG 58.363 37.500 1.74 1.74 41.35 5.52
2784 2986 5.006844 GGAGCCGTTAATTAAGAAGAAGAGC 59.993 44.000 0.00 0.00 0.00 4.09
2787 2989 5.163884 GCCGTTAATTAAGAAGAAGAGCGTT 60.164 40.000 0.00 0.00 0.00 4.84
2829 3039 9.710900 AAAATTAGACAAAAACCATCTCAATCC 57.289 29.630 0.00 0.00 0.00 3.01
2830 3040 8.421249 AATTAGACAAAAACCATCTCAATCCA 57.579 30.769 0.00 0.00 0.00 3.41
2833 3043 6.542821 AGACAAAAACCATCTCAATCCACTA 58.457 36.000 0.00 0.00 0.00 2.74
2841 3051 7.862274 ACCATCTCAATCCACTAATCAGATA 57.138 36.000 0.00 0.00 0.00 1.98
2842 3052 7.675062 ACCATCTCAATCCACTAATCAGATAC 58.325 38.462 0.00 0.00 0.00 2.24
2850 3060 6.544928 TCCACTAATCAGATACACACACAT 57.455 37.500 0.00 0.00 0.00 3.21
2859 3069 9.665719 AATCAGATACACACACATAATACAACA 57.334 29.630 0.00 0.00 0.00 3.33
2886 3096 4.163458 ACCACAGTGAAGAAAACCTAGTCA 59.837 41.667 0.62 0.00 0.00 3.41
2910 3120 9.906660 TCAAGGTTTTACATTAACATCATTGAC 57.093 29.630 0.00 0.00 0.00 3.18
2913 3123 8.450964 AGGTTTTACATTAACATCATTGACTCG 58.549 33.333 0.00 0.00 0.00 4.18
2915 3125 9.051027 GTTTTACATTAACATCATTGACTCGTG 57.949 33.333 0.00 0.00 0.00 4.35
2916 3126 5.801350 ACATTAACATCATTGACTCGTGG 57.199 39.130 0.00 0.00 0.00 4.94
2928 3138 3.305398 GACTCGTGGTCATCACTTCTT 57.695 47.619 6.46 0.00 43.94 2.52
2929 3139 3.246619 GACTCGTGGTCATCACTTCTTC 58.753 50.000 6.46 0.00 43.94 2.87
2931 3141 1.275291 TCGTGGTCATCACTTCTTCCC 59.725 52.381 0.00 0.00 43.94 3.97
2932 3142 1.276421 CGTGGTCATCACTTCTTCCCT 59.724 52.381 0.00 0.00 43.94 4.20
2934 3144 3.429547 CGTGGTCATCACTTCTTCCCTAG 60.430 52.174 0.00 0.00 43.94 3.02
2948 3158 2.457598 TCCCTAGCAAGTGACTTCGAT 58.542 47.619 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.458779 GGGAGTTTCAAAAATGACGAACTTG 59.541 40.000 0.00 0.00 0.00 3.16
12 13 5.858581 CGATTGAGGGAGTTTCAAAAATGAC 59.141 40.000 0.00 0.00 38.01 3.06
17 18 6.374333 CCTAATCGATTGAGGGAGTTTCAAAA 59.626 38.462 20.87 0.00 38.01 2.44
30 31 5.106869 CGAAACAAACACCCTAATCGATTGA 60.107 40.000 20.87 4.27 0.00 2.57
31 32 5.086058 CGAAACAAACACCCTAATCGATTG 58.914 41.667 20.87 6.70 0.00 2.67
35 36 2.160813 CCCGAAACAAACACCCTAATCG 59.839 50.000 0.00 0.00 0.00 3.34
36 37 3.414269 TCCCGAAACAAACACCCTAATC 58.586 45.455 0.00 0.00 0.00 1.75
39 40 3.512219 AATCCCGAAACAAACACCCTA 57.488 42.857 0.00 0.00 0.00 3.53
40 41 2.364002 CAAATCCCGAAACAAACACCCT 59.636 45.455 0.00 0.00 0.00 4.34
42 43 2.101750 ACCAAATCCCGAAACAAACACC 59.898 45.455 0.00 0.00 0.00 4.16
43 44 3.446310 ACCAAATCCCGAAACAAACAC 57.554 42.857 0.00 0.00 0.00 3.32
44 45 3.447586 TGAACCAAATCCCGAAACAAACA 59.552 39.130 0.00 0.00 0.00 2.83
46 47 4.342378 TCATGAACCAAATCCCGAAACAAA 59.658 37.500 0.00 0.00 0.00 2.83
49 50 4.718940 ATCATGAACCAAATCCCGAAAC 57.281 40.909 0.00 0.00 0.00 2.78
50 51 5.621104 CGAAATCATGAACCAAATCCCGAAA 60.621 40.000 0.00 0.00 0.00 3.46
51 52 4.142491 CGAAATCATGAACCAAATCCCGAA 60.142 41.667 0.00 0.00 0.00 4.30
53 54 3.376859 TCGAAATCATGAACCAAATCCCG 59.623 43.478 0.00 0.00 0.00 5.14
54 55 4.399303 AGTCGAAATCATGAACCAAATCCC 59.601 41.667 0.00 0.00 0.00 3.85
55 56 5.335127 CAGTCGAAATCATGAACCAAATCC 58.665 41.667 0.00 0.00 0.00 3.01
56 57 5.123820 TCCAGTCGAAATCATGAACCAAATC 59.876 40.000 0.00 0.00 0.00 2.17
73 74 4.092771 TCAGAAGTCGTTAATCCAGTCG 57.907 45.455 0.00 0.00 0.00 4.18
80 81 8.492673 TGCTATTGATTTCAGAAGTCGTTAAT 57.507 30.769 1.53 0.00 0.00 1.40
85 86 4.330894 TGCTGCTATTGATTTCAGAAGTCG 59.669 41.667 0.00 0.00 0.00 4.18
105 107 4.475345 TGTGTTTTTATAGGGTGGTTGCT 58.525 39.130 0.00 0.00 0.00 3.91
124 126 6.697019 CCCAGTGTTTCTTCTTTGTTAATGTG 59.303 38.462 0.00 0.00 0.00 3.21
130 132 2.430694 GCCCCAGTGTTTCTTCTTTGTT 59.569 45.455 0.00 0.00 0.00 2.83
136 138 4.036852 GCTATAATGCCCCAGTGTTTCTTC 59.963 45.833 0.00 0.00 0.00 2.87
138 140 3.053693 TGCTATAATGCCCCAGTGTTTCT 60.054 43.478 0.00 0.00 0.00 2.52
139 141 3.287222 TGCTATAATGCCCCAGTGTTTC 58.713 45.455 0.00 0.00 0.00 2.78
148 150 6.150976 TGCACTATATTGTTGCTATAATGCCC 59.849 38.462 0.63 0.00 34.83 5.36
174 176 6.348540 GGAAGTTTCTTATGCTGGTAGTTGTG 60.349 42.308 0.00 0.00 0.00 3.33
183 185 7.011482 GTGTATGTAGGGAAGTTTCTTATGCTG 59.989 40.741 0.00 0.00 0.00 4.41
187 189 9.396022 CAATGTGTATGTAGGGAAGTTTCTTAT 57.604 33.333 0.00 0.00 0.00 1.73
198 200 7.054124 ACTAATCAACCAATGTGTATGTAGGG 58.946 38.462 0.00 0.00 0.00 3.53
199 201 9.261180 CTACTAATCAACCAATGTGTATGTAGG 57.739 37.037 0.00 0.00 0.00 3.18
208 210 9.905713 ATGTGTTATCTACTAATCAACCAATGT 57.094 29.630 0.00 0.00 0.00 2.71
238 240 3.576550 GGTGGGCCTTTTCTGAAAATGTA 59.423 43.478 15.30 2.93 0.00 2.29
240 242 2.368221 TGGTGGGCCTTTTCTGAAAATG 59.632 45.455 15.30 13.56 35.27 2.32
243 245 2.166907 TTGGTGGGCCTTTTCTGAAA 57.833 45.000 4.53 0.00 35.27 2.69
244 246 2.166907 TTTGGTGGGCCTTTTCTGAA 57.833 45.000 4.53 0.00 35.27 3.02
248 250 3.323691 ACAGTATTTTGGTGGGCCTTTTC 59.676 43.478 4.53 0.00 35.27 2.29
304 306 3.027412 TGTTACTTGGTTTGGCATGTGT 58.973 40.909 0.00 0.00 0.00 3.72
317 319 9.536558 TTCGATTTCATACGAAAATGTTACTTG 57.463 29.630 0.00 0.00 44.12 3.16
330 332 5.910166 TGTTTGGTGTTTTCGATTTCATACG 59.090 36.000 0.00 0.00 0.00 3.06
331 333 7.221067 TGTTGTTTGGTGTTTTCGATTTCATAC 59.779 33.333 0.00 0.00 0.00 2.39
332 334 7.221067 GTGTTGTTTGGTGTTTTCGATTTCATA 59.779 33.333 0.00 0.00 0.00 2.15
341 343 3.982058 TCGTTGTGTTGTTTGGTGTTTTC 59.018 39.130 0.00 0.00 0.00 2.29
352 354 1.010125 GTGCGCATCGTTGTGTTGT 60.010 52.632 15.91 0.00 35.72 3.32
356 358 2.902419 TTGGGTGCGCATCGTTGTG 61.902 57.895 15.91 2.63 36.41 3.33
357 359 2.593148 TTGGGTGCGCATCGTTGT 60.593 55.556 15.91 0.00 0.00 3.32
364 366 2.463589 CTAGAAGGGTTGGGTGCGCA 62.464 60.000 5.66 5.66 0.00 6.09
365 367 1.745489 CTAGAAGGGTTGGGTGCGC 60.745 63.158 0.00 0.00 0.00 6.09
367 369 3.646736 ATTACTAGAAGGGTTGGGTGC 57.353 47.619 0.00 0.00 0.00 5.01
369 371 6.964086 TCTTCTTATTACTAGAAGGGTTGGGT 59.036 38.462 11.46 0.00 45.52 4.51
411 413 5.925397 GCATCCACAATTGTATTGTGTTCAA 59.075 36.000 23.43 11.59 46.05 2.69
420 422 8.282115 TGTGTATGTGAGCATCCACAATTGTAT 61.282 37.037 11.53 0.00 44.99 2.29
447 449 4.553815 CGTTCGTAGAAGTGAGTGTACATG 59.446 45.833 0.00 0.00 45.90 3.21
450 452 2.907392 GCGTTCGTAGAAGTGAGTGTAC 59.093 50.000 0.00 0.00 45.90 2.90
462 464 3.887327 GTGCGAGCGCGTTCGTAG 61.887 66.667 38.30 17.87 45.51 3.51
470 472 2.094126 GATATGGTGTGTGCGAGCGC 62.094 60.000 8.08 8.08 42.35 5.92
490 492 1.000506 GTACTTCGGAGGTGCTCACAA 59.999 52.381 2.65 0.00 31.08 3.33
506 508 0.553819 TTTTGTGGCACCCCAGTACT 59.446 50.000 16.26 0.00 43.18 2.73
507 509 1.272212 CATTTTGTGGCACCCCAGTAC 59.728 52.381 16.26 0.00 43.18 2.73
516 518 5.009110 TCGTCAATCTTAACATTTTGTGGCA 59.991 36.000 0.00 0.00 0.00 4.92
527 529 3.181533 GCGGTGACTTCGTCAATCTTAAC 60.182 47.826 0.00 0.00 44.49 2.01
530 532 1.270094 TGCGGTGACTTCGTCAATCTT 60.270 47.619 0.00 0.00 44.49 2.40
621 665 8.353423 ACTTGGCATTGATAGTGTATTTTTCT 57.647 30.769 0.00 0.00 0.00 2.52
633 678 6.064060 CCAAATCCTAGACTTGGCATTGATA 58.936 40.000 16.36 0.00 33.65 2.15
653 698 7.110155 GTGAAATTAGTCTACCAGGATCCAAA 58.890 38.462 15.82 0.00 0.00 3.28
657 702 5.290386 CGGTGAAATTAGTCTACCAGGATC 58.710 45.833 0.00 0.00 0.00 3.36
659 704 3.118884 GCGGTGAAATTAGTCTACCAGGA 60.119 47.826 0.00 0.00 0.00 3.86
663 708 3.621715 CCTTGCGGTGAAATTAGTCTACC 59.378 47.826 0.00 0.00 0.00 3.18
666 711 3.695830 TCCTTGCGGTGAAATTAGTCT 57.304 42.857 0.00 0.00 0.00 3.24
680 725 3.153919 TCAACATGGTTAGGTTCCTTGC 58.846 45.455 0.00 0.00 34.71 4.01
768 822 2.825532 GCAAGGTGGGTTGTGTTGATAT 59.174 45.455 0.00 0.00 0.00 1.63
850 938 0.601311 AAATATCCTCAGAGCGCGCC 60.601 55.000 30.33 19.60 0.00 6.53
1342 1444 2.651361 ACGCTGGAGACGTCCTTG 59.349 61.111 13.01 1.43 44.30 3.61
1350 1452 1.751351 CCTCAGTATTGACGCTGGAGA 59.249 52.381 0.00 0.00 33.81 3.71
1359 1461 2.935238 GCGTTCTTGGCCTCAGTATTGA 60.935 50.000 3.32 0.00 0.00 2.57
1365 1467 2.671177 CGTGCGTTCTTGGCCTCAG 61.671 63.158 3.32 0.00 0.00 3.35
1511 1613 0.471591 ATGAAGGTGCTTGGGCCAAA 60.472 50.000 21.28 3.00 37.74 3.28
1641 1743 4.052229 CGTCGTCCTCGGCCTTGT 62.052 66.667 0.00 0.00 38.56 3.16
1700 1802 1.003355 CCATGTCTGCGGTGGAAGT 60.003 57.895 0.00 0.00 34.94 3.01
1715 1817 4.015406 TGCGGAGAACGGCACCAT 62.015 61.111 0.00 0.00 44.93 3.55
1774 1876 3.206957 TCGATCATCGTCGCCGGT 61.207 61.111 7.00 0.00 41.35 5.28
1879 1981 2.104331 CGCTAGGGCAGGTACACG 59.896 66.667 0.00 0.00 38.60 4.49
1911 2039 2.969827 TCGAGCAAGCGACCATGA 59.030 55.556 0.00 0.00 35.01 3.07
1929 2059 4.797349 GGTTACGATTAGACAAGTCGAAGG 59.203 45.833 0.69 0.28 38.63 3.46
1935 2065 3.841643 CGGTGGTTACGATTAGACAAGT 58.158 45.455 0.00 0.00 0.00 3.16
1959 2096 7.367285 GGCACACTGAGAGTATAGATTAAGAG 58.633 42.308 0.00 0.00 0.00 2.85
2031 2187 5.358922 ACATAATTTGCTTTGCACAAGTGT 58.641 33.333 1.79 0.00 38.71 3.55
2032 2188 5.693104 AGACATAATTTGCTTTGCACAAGTG 59.307 36.000 9.40 0.00 38.71 3.16
2033 2189 5.693104 CAGACATAATTTGCTTTGCACAAGT 59.307 36.000 9.40 0.00 38.71 3.16
2034 2190 5.921976 TCAGACATAATTTGCTTTGCACAAG 59.078 36.000 0.00 0.00 38.71 3.16
2035 2191 5.840715 TCAGACATAATTTGCTTTGCACAA 58.159 33.333 0.00 0.00 38.71 3.33
2036 2192 5.450592 TCAGACATAATTTGCTTTGCACA 57.549 34.783 0.00 0.00 38.71 4.57
2037 2193 5.922544 AGTTCAGACATAATTTGCTTTGCAC 59.077 36.000 0.00 0.00 38.71 4.57
2038 2194 6.088016 AGTTCAGACATAATTTGCTTTGCA 57.912 33.333 0.00 0.00 36.47 4.08
2039 2195 6.183359 CGAAGTTCAGACATAATTTGCTTTGC 60.183 38.462 3.32 0.00 0.00 3.68
2040 2196 6.306356 CCGAAGTTCAGACATAATTTGCTTTG 59.694 38.462 3.32 0.00 0.00 2.77
2041 2197 6.016276 ACCGAAGTTCAGACATAATTTGCTTT 60.016 34.615 3.32 0.00 0.00 3.51
2042 2198 5.473504 ACCGAAGTTCAGACATAATTTGCTT 59.526 36.000 3.32 0.00 0.00 3.91
2064 2220 9.558648 CAACAAACCCGTAGTAATAATTAAACC 57.441 33.333 0.00 0.00 0.00 3.27
2091 2255 8.677300 CATGATATTTACACTGCTTACTGGTTT 58.323 33.333 0.00 0.00 0.00 3.27
2101 2292 8.824159 AGTACTGATCATGATATTTACACTGC 57.176 34.615 8.54 0.00 0.00 4.40
2138 2329 1.961277 GCAGTCCACACCGTCCAAG 60.961 63.158 0.00 0.00 0.00 3.61
2141 2332 2.665185 GTGCAGTCCACACCGTCC 60.665 66.667 0.00 0.00 44.06 4.79
2193 2395 0.463833 GGCCTTAGTTGCGTATGCCT 60.464 55.000 4.05 0.00 41.78 4.75
2194 2396 0.463833 AGGCCTTAGTTGCGTATGCC 60.464 55.000 0.00 0.00 41.78 4.40
2196 2398 2.604046 AGAGGCCTTAGTTGCGTATG 57.396 50.000 6.77 0.00 0.00 2.39
2197 2399 3.629142 AAAGAGGCCTTAGTTGCGTAT 57.371 42.857 6.77 0.00 31.15 3.06
2198 2400 3.071479 CAAAAGAGGCCTTAGTTGCGTA 58.929 45.455 6.77 0.00 31.15 4.42
2199 2401 1.880027 CAAAAGAGGCCTTAGTTGCGT 59.120 47.619 6.77 0.00 31.15 5.24
2200 2402 1.200020 CCAAAAGAGGCCTTAGTTGCG 59.800 52.381 6.77 2.49 31.15 4.85
2202 2404 3.888930 TGAACCAAAAGAGGCCTTAGTTG 59.111 43.478 6.77 11.36 31.15 3.16
2203 2405 4.178956 TGAACCAAAAGAGGCCTTAGTT 57.821 40.909 6.77 4.67 31.15 2.24
2204 2406 3.876309 TGAACCAAAAGAGGCCTTAGT 57.124 42.857 6.77 0.00 31.15 2.24
2206 2408 4.538490 TCCTATGAACCAAAAGAGGCCTTA 59.462 41.667 6.77 0.00 31.15 2.69
2208 2410 2.919602 TCCTATGAACCAAAAGAGGCCT 59.080 45.455 3.86 3.86 0.00 5.19
2209 2411 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
2210 2412 5.930135 TCTATCCTATGAACCAAAAGAGGC 58.070 41.667 0.00 0.00 0.00 4.70
2211 2413 8.986929 AATTCTATCCTATGAACCAAAAGAGG 57.013 34.615 0.00 0.00 0.00 3.69
2242 2444 9.844257 CTCATTTCCTACAAGATTCCTATTTCT 57.156 33.333 0.00 0.00 0.00 2.52
2243 2445 9.838339 TCTCATTTCCTACAAGATTCCTATTTC 57.162 33.333 0.00 0.00 0.00 2.17
2245 2447 9.790344 CATCTCATTTCCTACAAGATTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
2246 2448 9.163894 TCATCTCATTTCCTACAAGATTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
2247 2449 8.424918 GTCATCTCATTTCCTACAAGATTCCTA 58.575 37.037 0.00 0.00 0.00 2.94
2248 2450 7.092712 TGTCATCTCATTTCCTACAAGATTCCT 60.093 37.037 0.00 0.00 0.00 3.36
2249 2451 7.050377 TGTCATCTCATTTCCTACAAGATTCC 58.950 38.462 0.00 0.00 0.00 3.01
2250 2452 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
2251 2453 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
2252 2454 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
2253 2455 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
2254 2456 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
2255 2457 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
2256 2458 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
2257 2459 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
2266 2468 4.832266 AGGACCTGAGATACATGTCATCTC 59.168 45.833 24.04 24.04 45.76 2.75
2267 2469 4.813809 AGGACCTGAGATACATGTCATCT 58.186 43.478 0.00 9.42 42.89 2.90
2268 2470 6.435591 TCATAGGACCTGAGATACATGTCATC 59.564 42.308 0.00 4.47 42.89 2.92
2269 2471 6.318112 TCATAGGACCTGAGATACATGTCAT 58.682 40.000 0.00 0.00 42.89 3.06
2270 2472 5.705400 TCATAGGACCTGAGATACATGTCA 58.295 41.667 0.00 0.00 42.89 3.58
2271 2473 5.772672 ACTCATAGGACCTGAGATACATGTC 59.227 44.000 15.76 0.00 42.22 3.06
2272 2474 5.710646 ACTCATAGGACCTGAGATACATGT 58.289 41.667 15.76 2.69 42.22 3.21
2273 2475 7.389803 CTACTCATAGGACCTGAGATACATG 57.610 44.000 15.76 5.02 42.22 3.21
2288 2490 9.703892 CATCTTGTTTCCTATTCCTACTCATAG 57.296 37.037 0.00 0.00 0.00 2.23
2289 2491 9.213777 ACATCTTGTTTCCTATTCCTACTCATA 57.786 33.333 0.00 0.00 0.00 2.15
2290 2492 8.095452 ACATCTTGTTTCCTATTCCTACTCAT 57.905 34.615 0.00 0.00 0.00 2.90
2291 2493 7.180229 TGACATCTTGTTTCCTATTCCTACTCA 59.820 37.037 0.00 0.00 0.00 3.41
2292 2494 7.556844 TGACATCTTGTTTCCTATTCCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
2293 2495 7.496346 TGACATCTTGTTTCCTATTCCTACT 57.504 36.000 0.00 0.00 0.00 2.57
2294 2496 8.738645 AATGACATCTTGTTTCCTATTCCTAC 57.261 34.615 0.00 0.00 0.00 3.18
2295 2497 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
2296 2498 7.123247 CCAAATGACATCTTGTTTCCTATTCCT 59.877 37.037 0.00 0.00 0.00 3.36
2297 2499 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
2298 2500 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
2299 2501 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
2300 2502 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
2301 2503 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
2302 2504 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
2303 2505 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
2315 2517 8.961294 AAATTCTTTTGATGTCAACCAAATGA 57.039 26.923 11.92 11.92 35.81 2.57
2339 2541 7.823745 AAAAGAGCCTAGACTCAATGAAAAA 57.176 32.000 8.89 0.00 39.26 1.94
2340 2542 7.823745 AAAAAGAGCCTAGACTCAATGAAAA 57.176 32.000 8.89 0.00 39.26 2.29
2367 2569 9.973661 TTCTATCCTCCACATTTCATAGAAAAA 57.026 29.630 0.00 0.00 32.47 1.94
2368 2570 9.973661 TTTCTATCCTCCACATTTCATAGAAAA 57.026 29.630 8.71 0.00 38.76 2.29
2369 2571 9.396022 GTTTCTATCCTCCACATTTCATAGAAA 57.604 33.333 7.52 7.52 39.11 2.52
2370 2572 7.993183 GGTTTCTATCCTCCACATTTCATAGAA 59.007 37.037 0.00 0.00 33.19 2.10
2371 2573 7.127186 TGGTTTCTATCCTCCACATTTCATAGA 59.873 37.037 0.00 0.00 0.00 1.98
2372 2574 7.282585 TGGTTTCTATCCTCCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
2373 2575 7.206789 TGGTTTCTATCCTCCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
2374 2576 6.078456 TGGTTTCTATCCTCCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
2375 2577 5.512942 TGGTTTCTATCCTCCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
2376 2578 6.039829 GGATTGGTTTCTATCCTCCACATTTC 59.960 42.308 0.00 0.00 40.55 2.17
2377 2579 5.893824 GGATTGGTTTCTATCCTCCACATTT 59.106 40.000 0.00 0.00 40.55 2.32
2378 2580 5.449553 GGATTGGTTTCTATCCTCCACATT 58.550 41.667 0.00 0.00 40.55 2.71
2379 2581 5.053978 GGATTGGTTTCTATCCTCCACAT 57.946 43.478 0.00 0.00 40.55 3.21
2380 2582 4.503714 GGATTGGTTTCTATCCTCCACA 57.496 45.455 0.00 0.00 40.55 4.17
2412 2614 9.578576 CCTTTGATTCATAGGAATGGATTCTTA 57.421 33.333 15.80 0.00 43.69 2.10
2413 2615 7.508296 CCCTTTGATTCATAGGAATGGATTCTT 59.492 37.037 20.87 0.00 43.69 2.52
2414 2616 7.008941 CCCTTTGATTCATAGGAATGGATTCT 58.991 38.462 20.87 0.00 43.69 2.40
2415 2617 6.294955 GCCCTTTGATTCATAGGAATGGATTC 60.295 42.308 20.87 0.00 43.69 2.52
2416 2618 5.541484 GCCCTTTGATTCATAGGAATGGATT 59.459 40.000 20.87 0.00 43.69 3.01
2417 2619 5.082425 GCCCTTTGATTCATAGGAATGGAT 58.918 41.667 20.87 0.00 43.69 3.41
2418 2620 4.168675 AGCCCTTTGATTCATAGGAATGGA 59.831 41.667 20.87 0.00 43.69 3.41
2419 2621 4.477249 AGCCCTTTGATTCATAGGAATGG 58.523 43.478 20.87 3.33 43.69 3.16
2420 2622 6.475596 AAAGCCCTTTGATTCATAGGAATG 57.524 37.500 20.87 8.54 43.69 2.67
2421 2623 8.608185 TTTAAAGCCCTTTGATTCATAGGAAT 57.392 30.769 20.87 1.48 38.85 3.01
2422 2624 7.124147 CCTTTAAAGCCCTTTGATTCATAGGAA 59.876 37.037 20.87 7.25 35.14 3.36
2423 2625 6.607198 CCTTTAAAGCCCTTTGATTCATAGGA 59.393 38.462 20.87 1.95 35.14 2.94
2424 2626 6.607198 TCCTTTAAAGCCCTTTGATTCATAGG 59.393 38.462 14.34 14.34 33.40 2.57
2425 2627 7.645058 TCCTTTAAAGCCCTTTGATTCATAG 57.355 36.000 9.86 0.00 34.23 2.23
2426 2628 8.429237 TTTCCTTTAAAGCCCTTTGATTCATA 57.571 30.769 9.86 0.00 34.23 2.15
2427 2629 6.933514 TTCCTTTAAAGCCCTTTGATTCAT 57.066 33.333 9.86 0.00 34.23 2.57
2428 2630 6.739331 TTTCCTTTAAAGCCCTTTGATTCA 57.261 33.333 9.86 0.00 34.23 2.57
2480 2682 9.706529 AGGCTTCCTTAGAAATTTCATAGAAAT 57.293 29.630 19.99 0.00 0.00 2.17
2483 2685 9.614792 GTTAGGCTTCCTTAGAAATTTCATAGA 57.385 33.333 19.99 8.26 34.61 1.98
2484 2686 9.620259 AGTTAGGCTTCCTTAGAAATTTCATAG 57.380 33.333 19.99 14.81 34.61 2.23
2485 2687 9.396022 CAGTTAGGCTTCCTTAGAAATTTCATA 57.604 33.333 19.99 6.53 34.61 2.15
2486 2688 7.340487 CCAGTTAGGCTTCCTTAGAAATTTCAT 59.660 37.037 19.99 7.95 34.61 2.57
2487 2689 6.659242 CCAGTTAGGCTTCCTTAGAAATTTCA 59.341 38.462 19.99 3.83 34.61 2.69
2488 2690 7.089770 CCAGTTAGGCTTCCTTAGAAATTTC 57.910 40.000 10.33 10.33 34.61 2.17
2504 2706 2.858344 CAATCGACGTAAGCCAGTTAGG 59.142 50.000 0.00 0.00 45.62 2.69
2560 2762 2.950309 TCCTACTCCGAGTTGTCATAGC 59.050 50.000 6.31 0.00 0.00 2.97
2578 2780 0.846693 AGCTGAACCAACAACCTCCT 59.153 50.000 0.00 0.00 0.00 3.69
2591 2793 2.040278 AGTTGTCATAGGCCAAGCTGAA 59.960 45.455 5.01 0.00 0.00 3.02
2592 2794 1.630369 AGTTGTCATAGGCCAAGCTGA 59.370 47.619 5.01 0.00 0.00 4.26
2593 2795 2.012673 GAGTTGTCATAGGCCAAGCTG 58.987 52.381 5.01 0.00 0.00 4.24
2594 2796 1.406069 CGAGTTGTCATAGGCCAAGCT 60.406 52.381 5.01 0.00 0.00 3.74
2595 2797 1.009829 CGAGTTGTCATAGGCCAAGC 58.990 55.000 5.01 0.00 0.00 4.01
2596 2798 1.207089 TCCGAGTTGTCATAGGCCAAG 59.793 52.381 5.01 0.00 0.00 3.61
2597 2799 1.207089 CTCCGAGTTGTCATAGGCCAA 59.793 52.381 5.01 0.00 0.00 4.52
2598 2800 0.824109 CTCCGAGTTGTCATAGGCCA 59.176 55.000 5.01 0.00 0.00 5.36
2599 2801 0.824759 ACTCCGAGTTGTCATAGGCC 59.175 55.000 0.00 0.00 0.00 5.19
2600 2802 2.034812 CCTACTCCGAGTTGTCATAGGC 59.965 54.545 6.31 0.00 0.00 3.93
2601 2803 3.552875 TCCTACTCCGAGTTGTCATAGG 58.447 50.000 6.31 6.41 0.00 2.57
2602 2804 3.566322 CCTCCTACTCCGAGTTGTCATAG 59.434 52.174 6.31 0.00 0.00 2.23
2603 2805 3.053842 ACCTCCTACTCCGAGTTGTCATA 60.054 47.826 6.31 0.00 0.00 2.15
2604 2806 2.291670 ACCTCCTACTCCGAGTTGTCAT 60.292 50.000 6.31 0.00 0.00 3.06
2605 2807 1.075050 ACCTCCTACTCCGAGTTGTCA 59.925 52.381 6.31 0.00 0.00 3.58
2606 2808 1.473278 CACCTCCTACTCCGAGTTGTC 59.527 57.143 6.31 0.00 0.00 3.18
2607 2809 1.546961 CACCTCCTACTCCGAGTTGT 58.453 55.000 6.31 0.00 0.00 3.32
2608 2810 0.818296 CCACCTCCTACTCCGAGTTG 59.182 60.000 6.31 4.59 0.00 3.16
2609 2811 0.408700 ACCACCTCCTACTCCGAGTT 59.591 55.000 6.31 0.00 0.00 3.01
2610 2812 0.408700 AACCACCTCCTACTCCGAGT 59.591 55.000 6.25 6.25 0.00 4.18
2611 2813 0.818296 CAACCACCTCCTACTCCGAG 59.182 60.000 0.00 0.00 0.00 4.63
2612 2814 1.255667 GCAACCACCTCCTACTCCGA 61.256 60.000 0.00 0.00 0.00 4.55
2613 2815 1.218316 GCAACCACCTCCTACTCCG 59.782 63.158 0.00 0.00 0.00 4.63
2614 2816 0.984995 AAGCAACCACCTCCTACTCC 59.015 55.000 0.00 0.00 0.00 3.85
2615 2817 1.623811 TGAAGCAACCACCTCCTACTC 59.376 52.381 0.00 0.00 0.00 2.59
2616 2818 1.625818 CTGAAGCAACCACCTCCTACT 59.374 52.381 0.00 0.00 0.00 2.57
2617 2819 1.946283 GCTGAAGCAACCACCTCCTAC 60.946 57.143 0.00 0.00 41.59 3.18
2618 2820 0.324943 GCTGAAGCAACCACCTCCTA 59.675 55.000 0.00 0.00 41.59 2.94
2619 2821 1.073897 GCTGAAGCAACCACCTCCT 59.926 57.895 0.00 0.00 41.59 3.69
2620 2822 0.538287 AAGCTGAAGCAACCACCTCC 60.538 55.000 4.90 0.00 45.16 4.30
2621 2823 0.595095 CAAGCTGAAGCAACCACCTC 59.405 55.000 4.90 0.00 45.16 3.85
2622 2824 0.825010 CCAAGCTGAAGCAACCACCT 60.825 55.000 4.90 0.00 45.16 4.00
2623 2825 1.662044 CCAAGCTGAAGCAACCACC 59.338 57.895 4.90 0.00 45.16 4.61
2624 2826 1.006922 GCCAAGCTGAAGCAACCAC 60.007 57.895 4.90 0.00 45.16 4.16
2625 2827 2.202395 GGCCAAGCTGAAGCAACCA 61.202 57.895 0.00 0.00 45.16 3.67
2626 2828 0.609131 TAGGCCAAGCTGAAGCAACC 60.609 55.000 5.01 0.34 45.16 3.77
2627 2829 1.133790 CATAGGCCAAGCTGAAGCAAC 59.866 52.381 5.01 0.00 45.16 4.17
2628 2830 1.004628 TCATAGGCCAAGCTGAAGCAA 59.995 47.619 5.01 0.00 45.16 3.91
2629 2831 0.620030 TCATAGGCCAAGCTGAAGCA 59.380 50.000 5.01 0.00 45.16 3.91
2630 2832 1.020437 GTCATAGGCCAAGCTGAAGC 58.980 55.000 5.01 0.00 42.49 3.86
2631 2833 2.286872 CTGTCATAGGCCAAGCTGAAG 58.713 52.381 5.01 0.00 0.00 3.02
2651 2853 0.249489 AAGAGCGTGTCACACTGTCC 60.249 55.000 6.33 0.00 31.34 4.02
2711 2913 1.962822 CAGCACCGCAGAGCAGAAA 60.963 57.895 0.00 0.00 0.00 2.52
2717 2919 1.020861 TAATGCACAGCACCGCAGAG 61.021 55.000 0.00 0.00 43.04 3.35
2720 2922 0.887247 AAATAATGCACAGCACCGCA 59.113 45.000 0.00 0.00 43.04 5.69
2748 2950 6.687081 ATTAACGGCTCCGATTCAAATTAA 57.313 33.333 15.95 7.73 42.83 1.40
2750 2952 5.576447 AATTAACGGCTCCGATTCAAATT 57.424 34.783 15.95 9.45 42.83 1.82
2751 2953 6.540914 TCTTAATTAACGGCTCCGATTCAAAT 59.459 34.615 15.95 4.37 42.83 2.32
2754 2956 5.013568 TCTTAATTAACGGCTCCGATTCA 57.986 39.130 15.95 0.00 42.83 2.57
2756 2958 5.667466 TCTTCTTAATTAACGGCTCCGATT 58.333 37.500 15.95 7.09 42.83 3.34
2757 2959 5.272283 TCTTCTTAATTAACGGCTCCGAT 57.728 39.130 15.95 5.76 42.83 4.18
2758 2960 4.724074 TCTTCTTAATTAACGGCTCCGA 57.276 40.909 15.95 0.00 42.83 4.55
2766 2968 7.235080 GGACAACGCTCTTCTTCTTAATTAAC 58.765 38.462 0.00 0.00 0.00 2.01
2807 3017 7.004086 AGTGGATTGAGATGGTTTTTGTCTAA 58.996 34.615 0.00 0.00 0.00 2.10
2808 3018 6.542821 AGTGGATTGAGATGGTTTTTGTCTA 58.457 36.000 0.00 0.00 0.00 2.59
2817 3027 6.760440 ATCTGATTAGTGGATTGAGATGGT 57.240 37.500 0.00 0.00 0.00 3.55
2818 3028 7.601886 GTGTATCTGATTAGTGGATTGAGATGG 59.398 40.741 0.00 0.00 0.00 3.51
2823 3033 7.041721 GTGTGTGTATCTGATTAGTGGATTGA 58.958 38.462 0.00 0.00 0.00 2.57
2833 3043 9.665719 TGTTGTATTATGTGTGTGTATCTGATT 57.334 29.630 0.00 0.00 0.00 2.57
2841 3051 5.008217 GGTGTGTGTTGTATTATGTGTGTGT 59.992 40.000 0.00 0.00 0.00 3.72
2842 3052 5.008118 TGGTGTGTGTTGTATTATGTGTGTG 59.992 40.000 0.00 0.00 0.00 3.82
2850 3060 5.024785 TCACTGTGGTGTGTGTTGTATTA 57.975 39.130 8.11 0.00 43.41 0.98
2859 3069 2.752903 GGTTTTCTTCACTGTGGTGTGT 59.247 45.455 8.11 0.00 43.41 3.72
2882 3092 9.912634 CAATGATGTTAATGTAAAACCTTGACT 57.087 29.630 0.00 0.00 0.00 3.41
2913 3123 3.680196 GCTAGGGAAGAAGTGATGACCAC 60.680 52.174 0.00 0.00 46.03 4.16
2915 3125 2.501723 TGCTAGGGAAGAAGTGATGACC 59.498 50.000 0.00 0.00 0.00 4.02
2916 3126 3.895232 TGCTAGGGAAGAAGTGATGAC 57.105 47.619 0.00 0.00 0.00 3.06
2928 3138 1.919240 TCGAAGTCACTTGCTAGGGA 58.081 50.000 0.00 0.00 0.00 4.20
2929 3139 2.969628 ATCGAAGTCACTTGCTAGGG 57.030 50.000 0.00 0.00 0.00 3.53



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.