Multiple sequence alignment - TraesCS7A01G202100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G202100 chr7A 100.000 2537 0 0 1 2537 163914760 163917296 0.000000e+00 4686.0
1 TraesCS7A01G202100 chr7A 80.110 362 69 1 1153 1511 46911434 46911795 1.500000e-67 267.0
2 TraesCS7A01G202100 chr7A 96.842 95 1 2 2445 2537 389135571 389135477 9.400000e-35 158.0
3 TraesCS7A01G202100 chr7B 93.136 1253 69 7 1153 2390 125065252 125066502 0.000000e+00 1821.0
4 TraesCS7A01G202100 chr7B 86.813 91 10 2 815 904 628152134 628152045 1.610000e-17 100.0
5 TraesCS7A01G202100 chr7B 100.000 34 0 0 2395 2428 125066527 125066560 2.110000e-06 63.9
6 TraesCS7A01G202100 chr7D 94.976 617 31 0 1774 2390 163011866 163012482 0.000000e+00 968.0
7 TraesCS7A01G202100 chr7D 93.434 396 26 0 1153 1548 163011098 163011493 2.810000e-164 588.0
8 TraesCS7A01G202100 chr1B 93.819 631 29 6 2 629 665413993 665413370 0.000000e+00 941.0
9 TraesCS7A01G202100 chr1B 89.474 76 8 0 829 904 5265911 5265836 2.080000e-16 97.1
10 TraesCS7A01G202100 chr1B 89.474 76 8 0 829 904 75939602 75939527 2.080000e-16 97.1
11 TraesCS7A01G202100 chr6A 97.959 98 0 2 2442 2537 450261219 450261122 4.340000e-38 169.0
12 TraesCS7A01G202100 chrUn 97.917 96 0 2 2444 2537 216377434 216377529 5.610000e-37 165.0
13 TraesCS7A01G202100 chrUn 88.608 79 9 0 829 907 16537645 16537567 2.080000e-16 97.1
14 TraesCS7A01G202100 chr2B 74.868 378 86 7 1154 1525 178731542 178731916 2.020000e-36 163.0
15 TraesCS7A01G202100 chr2B 88.608 79 9 0 829 907 32944938 32944860 2.080000e-16 97.1
16 TraesCS7A01G202100 chr2A 97.895 95 1 1 2444 2537 429139601 429139507 2.020000e-36 163.0
17 TraesCS7A01G202100 chr2A 97.895 95 1 1 2444 2537 760350415 760350509 2.020000e-36 163.0
18 TraesCS7A01G202100 chr2A 73.421 380 82 16 1154 1525 131711851 131712219 9.530000e-25 124.0
19 TraesCS7A01G202100 chr2A 86.207 87 9 3 830 915 315264268 315264184 9.670000e-15 91.6
20 TraesCS7A01G202100 chr3A 96.875 96 1 2 2444 2537 438229539 438229444 2.610000e-35 159.0
21 TraesCS7A01G202100 chr3A 96.842 95 0 3 2445 2537 42325647 42325740 3.380000e-34 156.0
22 TraesCS7A01G202100 chr1A 96.875 96 1 2 2444 2537 265702031 265701936 2.610000e-35 159.0
23 TraesCS7A01G202100 chr5A 95.833 96 2 2 2444 2537 601842333 601842238 1.220000e-33 154.0
24 TraesCS7A01G202100 chr2D 74.211 380 85 11 1154 1525 125344372 125344746 2.030000e-31 147.0
25 TraesCS7A01G202100 chr2D 89.474 76 8 0 829 904 376293775 376293850 2.080000e-16 97.1
26 TraesCS7A01G202100 chr4B 89.474 76 8 0 829 904 522018599 522018674 2.080000e-16 97.1
27 TraesCS7A01G202100 chr3B 87.342 79 10 0 829 907 273439324 273439402 9.670000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G202100 chr7A 163914760 163917296 2536 False 4686.00 4686 100.000 1 2537 1 chr7A.!!$F2 2536
1 TraesCS7A01G202100 chr7B 125065252 125066560 1308 False 942.45 1821 96.568 1153 2428 2 chr7B.!!$F1 1275
2 TraesCS7A01G202100 chr7D 163011098 163012482 1384 False 778.00 968 94.205 1153 2390 2 chr7D.!!$F1 1237
3 TraesCS7A01G202100 chr1B 665413370 665413993 623 True 941.00 941 93.819 2 629 1 chr1B.!!$R3 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 791 0.03213 TCACTCCGACTTGCACTGTC 59.968 55.0 8.52 8.52 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1880 0.179148 CTGCGCTGTCGGTGTGTATA 60.179 55.0 9.73 0.0 35.95 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 9.893305 AATTAACCATTCGTTTTTCTCTACTTG 57.107 29.630 0.00 0.00 35.79 3.16
167 170 9.975218 AATCTACTTCCTTTAGGATTTAGCAAA 57.025 29.630 0.00 0.00 44.98 3.68
188 191 2.481854 TGCAATGCAAATGGTGTGAAC 58.518 42.857 5.01 0.00 34.76 3.18
231 234 9.209175 TGTAAAAAGTTGTAGTTGTTTTTGCAT 57.791 25.926 6.01 0.00 38.62 3.96
232 235 9.471742 GTAAAAAGTTGTAGTTGTTTTTGCATG 57.528 29.630 0.00 0.00 35.68 4.06
251 254 5.641209 TGCATGTTTATTAAATGTGTTGCCC 59.359 36.000 0.00 0.00 0.00 5.36
270 273 9.959721 TGTTGCCCTCTAAAATCTATATAATCC 57.040 33.333 0.00 0.00 0.00 3.01
354 357 4.079253 TCCCAAAACAGTTGGCTATCTTC 58.921 43.478 0.00 0.00 38.23 2.87
355 358 3.193479 CCCAAAACAGTTGGCTATCTTCC 59.807 47.826 0.00 0.00 38.23 3.46
356 359 4.082125 CCAAAACAGTTGGCTATCTTCCT 58.918 43.478 0.00 0.00 32.18 3.36
357 360 4.524328 CCAAAACAGTTGGCTATCTTCCTT 59.476 41.667 0.00 0.00 32.18 3.36
358 361 5.464168 CAAAACAGTTGGCTATCTTCCTTG 58.536 41.667 0.00 0.00 0.00 3.61
359 362 4.373156 AACAGTTGGCTATCTTCCTTGT 57.627 40.909 0.00 0.00 0.00 3.16
360 363 3.679389 ACAGTTGGCTATCTTCCTTGTG 58.321 45.455 0.00 0.00 0.00 3.33
361 364 3.327757 ACAGTTGGCTATCTTCCTTGTGA 59.672 43.478 0.00 0.00 0.00 3.58
362 365 4.018960 ACAGTTGGCTATCTTCCTTGTGAT 60.019 41.667 0.00 0.00 0.00 3.06
365 368 6.599244 CAGTTGGCTATCTTCCTTGTGATTTA 59.401 38.462 0.00 0.00 0.00 1.40
370 373 7.888021 TGGCTATCTTCCTTGTGATTTAAAAGA 59.112 33.333 0.00 0.00 0.00 2.52
403 407 4.401519 AGAAGCTGTGAATATTGCAAGCAT 59.598 37.500 4.94 0.00 0.00 3.79
438 442 4.328440 GTGTAGACATGTGAGTGAGCAATC 59.672 45.833 1.15 0.00 0.00 2.67
439 443 3.690475 AGACATGTGAGTGAGCAATCA 57.310 42.857 1.15 0.00 32.55 2.57
442 446 5.737860 AGACATGTGAGTGAGCAATCATAA 58.262 37.500 1.15 0.00 37.75 1.90
448 452 5.352293 TGTGAGTGAGCAATCATAATGTCAC 59.648 40.000 3.84 0.00 37.75 3.67
524 528 8.738645 ACCTATTTTGCCTTAACTATCAAGAG 57.261 34.615 0.00 0.00 0.00 2.85
560 564 9.671279 TTTGCATCAATTAATCAGTCTCTTCTA 57.329 29.630 0.00 0.00 0.00 2.10
605 609 5.497474 GGTGGCTTAGTTTAAAGAGGATCA 58.503 41.667 0.00 0.00 37.82 2.92
614 618 6.342111 AGTTTAAAGAGGATCACGGAATCTC 58.658 40.000 0.00 0.00 37.82 2.75
635 639 5.282055 TCCATATTGGAGATCAGTGACAC 57.718 43.478 0.00 0.00 42.67 3.67
636 640 4.101585 TCCATATTGGAGATCAGTGACACC 59.898 45.833 0.84 0.00 42.67 4.16
637 641 4.102210 CCATATTGGAGATCAGTGACACCT 59.898 45.833 0.84 0.00 40.96 4.00
638 642 5.305386 CCATATTGGAGATCAGTGACACCTA 59.695 44.000 0.84 0.00 40.96 3.08
639 643 6.453943 CATATTGGAGATCAGTGACACCTAG 58.546 44.000 0.84 0.00 0.00 3.02
640 644 2.739943 TGGAGATCAGTGACACCTAGG 58.260 52.381 7.41 7.41 0.00 3.02
641 645 1.410882 GGAGATCAGTGACACCTAGGC 59.589 57.143 9.30 0.00 0.00 3.93
642 646 2.383855 GAGATCAGTGACACCTAGGCT 58.616 52.381 9.30 0.00 0.00 4.58
643 647 2.100584 GAGATCAGTGACACCTAGGCTG 59.899 54.545 9.30 7.87 0.00 4.85
644 648 1.137872 GATCAGTGACACCTAGGCTGG 59.862 57.143 9.30 0.87 0.00 4.85
645 649 0.114364 TCAGTGACACCTAGGCTGGA 59.886 55.000 9.30 0.00 0.00 3.86
646 650 0.534412 CAGTGACACCTAGGCTGGAG 59.466 60.000 9.30 0.00 0.00 3.86
647 651 0.409876 AGTGACACCTAGGCTGGAGA 59.590 55.000 9.30 0.00 0.00 3.71
648 652 1.203187 AGTGACACCTAGGCTGGAGAA 60.203 52.381 9.30 0.00 0.00 2.87
649 653 1.066787 GTGACACCTAGGCTGGAGAAC 60.067 57.143 9.30 0.00 0.00 3.01
650 654 1.267121 GACACCTAGGCTGGAGAACA 58.733 55.000 9.30 0.00 0.00 3.18
651 655 1.623811 GACACCTAGGCTGGAGAACAA 59.376 52.381 9.30 0.00 0.00 2.83
652 656 1.348036 ACACCTAGGCTGGAGAACAAC 59.652 52.381 9.30 0.00 0.00 3.32
653 657 0.608640 ACCTAGGCTGGAGAACAACG 59.391 55.000 9.30 0.00 0.00 4.10
654 658 0.108138 CCTAGGCTGGAGAACAACGG 60.108 60.000 0.00 0.00 0.00 4.44
655 659 0.895530 CTAGGCTGGAGAACAACGGA 59.104 55.000 0.00 0.00 0.00 4.69
656 660 0.606604 TAGGCTGGAGAACAACGGAC 59.393 55.000 0.00 0.00 0.00 4.79
657 661 1.122019 AGGCTGGAGAACAACGGACT 61.122 55.000 0.00 0.00 0.00 3.85
658 662 0.951040 GGCTGGAGAACAACGGACTG 60.951 60.000 0.00 0.00 0.00 3.51
659 663 0.249911 GCTGGAGAACAACGGACTGT 60.250 55.000 0.00 0.00 0.00 3.55
660 664 1.502231 CTGGAGAACAACGGACTGTG 58.498 55.000 0.00 0.00 0.00 3.66
661 665 0.531974 TGGAGAACAACGGACTGTGC 60.532 55.000 0.00 0.00 0.00 4.57
662 666 0.531974 GGAGAACAACGGACTGTGCA 60.532 55.000 0.00 0.00 0.00 4.57
663 667 0.861837 GAGAACAACGGACTGTGCAG 59.138 55.000 0.00 0.00 0.00 4.41
664 668 0.464036 AGAACAACGGACTGTGCAGA 59.536 50.000 6.17 0.00 0.00 4.26
665 669 0.582005 GAACAACGGACTGTGCAGAC 59.418 55.000 6.17 0.00 0.00 3.51
666 670 0.107897 AACAACGGACTGTGCAGACA 60.108 50.000 6.17 0.00 0.00 3.41
667 671 0.106708 ACAACGGACTGTGCAGACAT 59.893 50.000 6.17 0.00 0.00 3.06
668 672 1.343142 ACAACGGACTGTGCAGACATA 59.657 47.619 6.17 0.00 0.00 2.29
669 673 2.224185 ACAACGGACTGTGCAGACATAA 60.224 45.455 6.17 0.00 0.00 1.90
670 674 2.080286 ACGGACTGTGCAGACATAAC 57.920 50.000 6.17 0.00 0.00 1.89
671 675 1.618837 ACGGACTGTGCAGACATAACT 59.381 47.619 6.17 0.00 0.00 2.24
672 676 2.037251 ACGGACTGTGCAGACATAACTT 59.963 45.455 6.17 0.00 0.00 2.66
673 677 3.067106 CGGACTGTGCAGACATAACTTT 58.933 45.455 6.17 0.00 0.00 2.66
674 678 3.123621 CGGACTGTGCAGACATAACTTTC 59.876 47.826 6.17 0.00 0.00 2.62
675 679 4.065088 GGACTGTGCAGACATAACTTTCA 58.935 43.478 6.17 0.00 0.00 2.69
676 680 4.515191 GGACTGTGCAGACATAACTTTCAA 59.485 41.667 6.17 0.00 0.00 2.69
677 681 5.334414 GGACTGTGCAGACATAACTTTCAAG 60.334 44.000 6.17 0.00 0.00 3.02
678 682 4.023707 ACTGTGCAGACATAACTTTCAAGC 60.024 41.667 6.17 0.00 0.00 4.01
679 683 4.136796 TGTGCAGACATAACTTTCAAGCT 58.863 39.130 0.00 0.00 0.00 3.74
680 684 4.023792 TGTGCAGACATAACTTTCAAGCTG 60.024 41.667 0.00 0.00 0.00 4.24
681 685 3.503363 TGCAGACATAACTTTCAAGCTGG 59.497 43.478 0.00 0.00 0.00 4.85
682 686 3.671702 GCAGACATAACTTTCAAGCTGGC 60.672 47.826 0.00 0.00 0.00 4.85
683 687 3.084786 AGACATAACTTTCAAGCTGGCC 58.915 45.455 0.00 0.00 0.00 5.36
684 688 2.164422 GACATAACTTTCAAGCTGGCCC 59.836 50.000 0.00 0.00 0.00 5.80
685 689 1.478105 CATAACTTTCAAGCTGGCCCC 59.522 52.381 0.00 0.00 0.00 5.80
686 690 0.608035 TAACTTTCAAGCTGGCCCCG 60.608 55.000 0.00 0.00 0.00 5.73
687 691 3.752339 CTTTCAAGCTGGCCCCGC 61.752 66.667 0.00 2.42 0.00 6.13
698 702 3.827634 GCCCCGCCATTCTACTTG 58.172 61.111 0.00 0.00 0.00 3.16
699 703 2.481471 GCCCCGCCATTCTACTTGC 61.481 63.158 0.00 0.00 0.00 4.01
700 704 1.077787 CCCCGCCATTCTACTTGCA 60.078 57.895 0.00 0.00 0.00 4.08
701 705 1.376609 CCCCGCCATTCTACTTGCAC 61.377 60.000 0.00 0.00 0.00 4.57
702 706 1.376609 CCCGCCATTCTACTTGCACC 61.377 60.000 0.00 0.00 0.00 5.01
703 707 1.705337 CCGCCATTCTACTTGCACCG 61.705 60.000 0.00 0.00 0.00 4.94
704 708 1.705337 CGCCATTCTACTTGCACCGG 61.705 60.000 0.00 0.00 0.00 5.28
705 709 0.392461 GCCATTCTACTTGCACCGGA 60.392 55.000 9.46 0.00 0.00 5.14
706 710 1.656652 CCATTCTACTTGCACCGGAG 58.343 55.000 9.46 0.00 0.00 4.63
723 727 4.258702 CGGAGGGAGTACATTATTCTGG 57.741 50.000 0.00 0.00 0.00 3.86
724 728 3.006967 CGGAGGGAGTACATTATTCTGGG 59.993 52.174 0.00 0.00 0.00 4.45
725 729 3.974642 GGAGGGAGTACATTATTCTGGGT 59.025 47.826 0.00 0.00 0.00 4.51
726 730 4.412528 GGAGGGAGTACATTATTCTGGGTT 59.587 45.833 0.00 0.00 0.00 4.11
727 731 5.104067 GGAGGGAGTACATTATTCTGGGTTT 60.104 44.000 0.00 0.00 0.00 3.27
728 732 5.755849 AGGGAGTACATTATTCTGGGTTTG 58.244 41.667 0.00 0.00 0.00 2.93
729 733 4.887655 GGGAGTACATTATTCTGGGTTTGG 59.112 45.833 0.00 0.00 0.00 3.28
730 734 4.338400 GGAGTACATTATTCTGGGTTTGGC 59.662 45.833 0.00 0.00 0.00 4.52
731 735 5.193099 AGTACATTATTCTGGGTTTGGCT 57.807 39.130 0.00 0.00 0.00 4.75
732 736 4.949856 AGTACATTATTCTGGGTTTGGCTG 59.050 41.667 0.00 0.00 0.00 4.85
733 737 3.778265 ACATTATTCTGGGTTTGGCTGT 58.222 40.909 0.00 0.00 0.00 4.40
734 738 4.929479 ACATTATTCTGGGTTTGGCTGTA 58.071 39.130 0.00 0.00 0.00 2.74
735 739 5.329399 ACATTATTCTGGGTTTGGCTGTAA 58.671 37.500 0.00 0.00 0.00 2.41
736 740 5.957774 ACATTATTCTGGGTTTGGCTGTAAT 59.042 36.000 0.00 0.00 0.00 1.89
737 741 7.122715 ACATTATTCTGGGTTTGGCTGTAATA 58.877 34.615 0.00 0.00 0.00 0.98
738 742 7.617723 ACATTATTCTGGGTTTGGCTGTAATAA 59.382 33.333 0.00 0.00 0.00 1.40
739 743 8.641541 CATTATTCTGGGTTTGGCTGTAATAAT 58.358 33.333 0.00 0.00 31.69 1.28
740 744 9.875708 ATTATTCTGGGTTTGGCTGTAATAATA 57.124 29.630 0.00 0.00 30.48 0.98
741 745 7.582667 ATTCTGGGTTTGGCTGTAATAATAC 57.417 36.000 0.00 0.00 0.00 1.89
742 746 6.321821 TCTGGGTTTGGCTGTAATAATACT 57.678 37.500 0.00 0.00 32.98 2.12
743 747 7.440505 TCTGGGTTTGGCTGTAATAATACTA 57.559 36.000 0.00 0.00 32.98 1.82
744 748 7.863722 TCTGGGTTTGGCTGTAATAATACTAA 58.136 34.615 0.00 0.00 32.98 2.24
745 749 8.330247 TCTGGGTTTGGCTGTAATAATACTAAA 58.670 33.333 0.00 0.00 32.98 1.85
746 750 8.880991 TGGGTTTGGCTGTAATAATACTAAAA 57.119 30.769 0.00 0.00 32.98 1.52
747 751 9.482175 TGGGTTTGGCTGTAATAATACTAAAAT 57.518 29.630 0.00 0.00 32.98 1.82
770 774 9.466497 AAATTCATGCTAGAATTCTAGGTTTCA 57.534 29.630 33.36 25.21 44.96 2.69
771 775 7.849804 TTCATGCTAGAATTCTAGGTTTCAC 57.150 36.000 33.36 20.66 44.63 3.18
772 776 7.187824 TCATGCTAGAATTCTAGGTTTCACT 57.812 36.000 33.36 15.62 44.63 3.41
773 777 7.268586 TCATGCTAGAATTCTAGGTTTCACTC 58.731 38.462 33.36 19.54 44.63 3.51
774 778 5.978814 TGCTAGAATTCTAGGTTTCACTCC 58.021 41.667 33.36 18.98 44.63 3.85
775 779 5.044558 GCTAGAATTCTAGGTTTCACTCCG 58.955 45.833 33.36 13.07 44.63 4.63
776 780 5.163540 GCTAGAATTCTAGGTTTCACTCCGA 60.164 44.000 33.36 4.90 44.63 4.55
777 781 5.074584 AGAATTCTAGGTTTCACTCCGAC 57.925 43.478 6.06 0.00 0.00 4.79
778 782 4.773149 AGAATTCTAGGTTTCACTCCGACT 59.227 41.667 6.06 0.00 0.00 4.18
779 783 5.246429 AGAATTCTAGGTTTCACTCCGACTT 59.754 40.000 6.06 0.00 0.00 3.01
780 784 3.936372 TCTAGGTTTCACTCCGACTTG 57.064 47.619 0.00 0.00 0.00 3.16
781 785 2.029290 TCTAGGTTTCACTCCGACTTGC 60.029 50.000 0.00 0.00 0.00 4.01
782 786 0.468226 AGGTTTCACTCCGACTTGCA 59.532 50.000 0.00 0.00 0.00 4.08
783 787 0.586802 GGTTTCACTCCGACTTGCAC 59.413 55.000 0.00 0.00 0.00 4.57
784 788 1.583054 GTTTCACTCCGACTTGCACT 58.417 50.000 0.00 0.00 0.00 4.40
785 789 1.261619 GTTTCACTCCGACTTGCACTG 59.738 52.381 0.00 0.00 0.00 3.66
786 790 0.464036 TTCACTCCGACTTGCACTGT 59.536 50.000 0.00 0.00 0.00 3.55
787 791 0.032130 TCACTCCGACTTGCACTGTC 59.968 55.000 8.52 8.52 0.00 3.51
788 792 0.249447 CACTCCGACTTGCACTGTCA 60.249 55.000 16.27 0.99 34.37 3.58
789 793 0.681733 ACTCCGACTTGCACTGTCAT 59.318 50.000 16.27 0.19 34.37 3.06
790 794 1.073964 CTCCGACTTGCACTGTCATG 58.926 55.000 16.27 8.69 34.37 3.07
791 795 0.950555 TCCGACTTGCACTGTCATGC 60.951 55.000 16.27 0.00 46.32 4.06
792 796 0.952497 CCGACTTGCACTGTCATGCT 60.952 55.000 16.27 0.00 46.28 3.79
793 797 1.672737 CCGACTTGCACTGTCATGCTA 60.673 52.381 16.27 0.00 46.28 3.49
800 804 5.710513 TTGCACTGTCATGCTAGAATTTT 57.289 34.783 0.00 0.00 46.28 1.82
801 805 6.816134 TTGCACTGTCATGCTAGAATTTTA 57.184 33.333 0.00 0.00 46.28 1.52
802 806 6.426980 TGCACTGTCATGCTAGAATTTTAG 57.573 37.500 0.00 0.00 46.28 1.85
803 807 5.939883 TGCACTGTCATGCTAGAATTTTAGT 59.060 36.000 5.04 0.00 46.28 2.24
804 808 7.102993 TGCACTGTCATGCTAGAATTTTAGTA 58.897 34.615 5.04 0.87 46.28 1.82
805 809 7.770433 TGCACTGTCATGCTAGAATTTTAGTAT 59.230 33.333 5.04 3.20 46.28 2.12
806 810 8.616076 GCACTGTCATGCTAGAATTTTAGTATT 58.384 33.333 4.17 0.00 42.62 1.89
907 911 9.503399 AAAAATTTAGAACGGAGAGAGTACATT 57.497 29.630 0.00 0.00 0.00 2.71
913 917 9.582431 TTAGAACGGAGAGAGTACATTATTTTG 57.418 33.333 0.00 0.00 0.00 2.44
914 918 7.042335 AGAACGGAGAGAGTACATTATTTTGG 58.958 38.462 0.00 0.00 0.00 3.28
915 919 5.671493 ACGGAGAGAGTACATTATTTTGGG 58.329 41.667 0.00 0.00 0.00 4.12
916 920 5.189145 ACGGAGAGAGTACATTATTTTGGGT 59.811 40.000 0.00 0.00 0.00 4.51
917 921 6.113411 CGGAGAGAGTACATTATTTTGGGTT 58.887 40.000 0.00 0.00 0.00 4.11
918 922 6.037172 CGGAGAGAGTACATTATTTTGGGTTG 59.963 42.308 0.00 0.00 0.00 3.77
919 923 6.318900 GGAGAGAGTACATTATTTTGGGTTGG 59.681 42.308 0.00 0.00 0.00 3.77
920 924 6.187682 AGAGAGTACATTATTTTGGGTTGGG 58.812 40.000 0.00 0.00 0.00 4.12
921 925 4.709886 AGAGTACATTATTTTGGGTTGGGC 59.290 41.667 0.00 0.00 0.00 5.36
922 926 4.683643 AGTACATTATTTTGGGTTGGGCT 58.316 39.130 0.00 0.00 0.00 5.19
923 927 3.979101 ACATTATTTTGGGTTGGGCTG 57.021 42.857 0.00 0.00 0.00 4.85
924 928 2.027285 ACATTATTTTGGGTTGGGCTGC 60.027 45.455 0.00 0.00 0.00 5.25
925 929 1.722034 TTATTTTGGGTTGGGCTGCA 58.278 45.000 0.50 0.00 0.00 4.41
926 930 1.722034 TATTTTGGGTTGGGCTGCAA 58.278 45.000 0.50 0.00 0.00 4.08
927 931 0.108396 ATTTTGGGTTGGGCTGCAAC 59.892 50.000 0.50 0.00 0.00 4.17
928 932 2.303549 TTTTGGGTTGGGCTGCAACG 62.304 55.000 0.50 0.00 33.65 4.10
936 940 3.042560 GGCTGCAACGCCTTTTCT 58.957 55.556 9.66 0.00 46.63 2.52
937 941 1.363807 GGCTGCAACGCCTTTTCTT 59.636 52.632 9.66 0.00 46.63 2.52
938 942 0.596082 GGCTGCAACGCCTTTTCTTA 59.404 50.000 9.66 0.00 46.63 2.10
939 943 1.000717 GGCTGCAACGCCTTTTCTTAA 60.001 47.619 9.66 0.00 46.63 1.85
940 944 2.544903 GGCTGCAACGCCTTTTCTTAAA 60.545 45.455 9.66 0.00 46.63 1.52
941 945 3.120041 GCTGCAACGCCTTTTCTTAAAA 58.880 40.909 0.00 0.00 0.00 1.52
942 946 3.740832 GCTGCAACGCCTTTTCTTAAAAT 59.259 39.130 0.00 0.00 0.00 1.82
943 947 4.920927 GCTGCAACGCCTTTTCTTAAAATA 59.079 37.500 0.00 0.00 0.00 1.40
944 948 5.404066 GCTGCAACGCCTTTTCTTAAAATAA 59.596 36.000 0.00 0.00 0.00 1.40
945 949 6.074034 GCTGCAACGCCTTTTCTTAAAATAAA 60.074 34.615 0.00 0.00 0.00 1.40
946 950 7.167831 TGCAACGCCTTTTCTTAAAATAAAC 57.832 32.000 0.00 0.00 0.00 2.01
947 951 6.757010 TGCAACGCCTTTTCTTAAAATAAACA 59.243 30.769 0.00 0.00 0.00 2.83
948 952 7.439655 TGCAACGCCTTTTCTTAAAATAAACAT 59.560 29.630 0.00 0.00 0.00 2.71
949 953 7.949962 GCAACGCCTTTTCTTAAAATAAACATC 59.050 33.333 0.00 0.00 0.00 3.06
950 954 8.973378 CAACGCCTTTTCTTAAAATAAACATCA 58.027 29.630 0.00 0.00 0.00 3.07
951 955 9.535878 AACGCCTTTTCTTAAAATAAACATCAA 57.464 25.926 0.00 0.00 0.00 2.57
952 956 9.705290 ACGCCTTTTCTTAAAATAAACATCAAT 57.295 25.926 0.00 0.00 0.00 2.57
964 968 9.853555 AAAATAAACATCAATTATCTGCGAACA 57.146 25.926 0.00 0.00 0.00 3.18
967 971 7.975866 AAACATCAATTATCTGCGAACATTC 57.024 32.000 0.00 0.00 0.00 2.67
981 985 4.897224 CGAACATTCGCAAATAGACATGT 58.103 39.130 0.00 0.00 44.26 3.21
982 986 4.957967 CGAACATTCGCAAATAGACATGTC 59.042 41.667 18.47 18.47 44.26 3.06
983 987 5.445806 CGAACATTCGCAAATAGACATGTCA 60.446 40.000 27.02 13.67 44.26 3.58
984 988 6.441093 AACATTCGCAAATAGACATGTCAT 57.559 33.333 27.02 15.24 0.00 3.06
985 989 6.441093 ACATTCGCAAATAGACATGTCATT 57.559 33.333 27.02 19.57 0.00 2.57
986 990 6.855836 ACATTCGCAAATAGACATGTCATTT 58.144 32.000 27.02 23.30 0.00 2.32
987 991 7.984391 ACATTCGCAAATAGACATGTCATTTA 58.016 30.769 27.02 11.79 0.00 1.40
988 992 7.910162 ACATTCGCAAATAGACATGTCATTTAC 59.090 33.333 27.02 20.27 0.00 2.01
989 993 6.031549 TCGCAAATAGACATGTCATTTACG 57.968 37.500 28.05 28.05 33.45 3.18
990 994 5.808030 TCGCAAATAGACATGTCATTTACGA 59.192 36.000 29.99 29.99 35.77 3.43
991 995 6.311690 TCGCAAATAGACATGTCATTTACGAA 59.688 34.615 30.67 22.54 35.54 3.85
992 996 6.408039 CGCAAATAGACATGTCATTTACGAAC 59.592 38.462 28.95 18.21 33.69 3.95
993 997 6.408039 GCAAATAGACATGTCATTTACGAACG 59.592 38.462 27.02 15.89 0.00 3.95
994 998 7.453034 CAAATAGACATGTCATTTACGAACGT 58.547 34.615 27.02 5.03 0.00 3.99
995 999 7.591006 AATAGACATGTCATTTACGAACGTT 57.409 32.000 27.02 0.00 0.00 3.99
996 1000 5.917541 AGACATGTCATTTACGAACGTTT 57.082 34.783 27.02 0.00 0.00 3.60
997 1001 6.295039 AGACATGTCATTTACGAACGTTTT 57.705 33.333 27.02 0.00 0.00 2.43
998 1002 7.410800 AGACATGTCATTTACGAACGTTTTA 57.589 32.000 27.02 0.00 0.00 1.52
999 1003 7.507304 AGACATGTCATTTACGAACGTTTTAG 58.493 34.615 27.02 0.00 0.00 1.85
1000 1004 7.383029 AGACATGTCATTTACGAACGTTTTAGA 59.617 33.333 27.02 0.00 0.00 2.10
1001 1005 8.025243 ACATGTCATTTACGAACGTTTTAGAT 57.975 30.769 0.46 0.00 0.00 1.98
1002 1006 7.955324 ACATGTCATTTACGAACGTTTTAGATG 59.045 33.333 0.46 8.39 0.00 2.90
1003 1007 7.410800 TGTCATTTACGAACGTTTTAGATGT 57.589 32.000 0.46 0.00 0.00 3.06
1004 1008 7.503991 TGTCATTTACGAACGTTTTAGATGTC 58.496 34.615 0.46 6.90 0.00 3.06
1005 1009 6.671616 GTCATTTACGAACGTTTTAGATGTCG 59.328 38.462 0.46 0.68 0.00 4.35
1006 1010 6.581919 TCATTTACGAACGTTTTAGATGTCGA 59.418 34.615 0.46 0.00 0.00 4.20
1007 1011 5.980324 TTACGAACGTTTTAGATGTCGAG 57.020 39.130 0.46 0.00 0.00 4.04
1008 1012 3.893720 ACGAACGTTTTAGATGTCGAGT 58.106 40.909 0.46 0.00 0.00 4.18
1009 1013 3.910767 ACGAACGTTTTAGATGTCGAGTC 59.089 43.478 0.46 0.00 0.00 3.36
1010 1014 4.156915 CGAACGTTTTAGATGTCGAGTCT 58.843 43.478 0.46 5.66 0.00 3.24
1011 1015 5.106948 ACGAACGTTTTAGATGTCGAGTCTA 60.107 40.000 0.46 3.90 0.00 2.59
1012 1016 5.224720 CGAACGTTTTAGATGTCGAGTCTAC 59.775 44.000 0.46 0.00 0.00 2.59
1013 1017 5.876612 ACGTTTTAGATGTCGAGTCTACT 57.123 39.130 6.91 0.00 0.00 2.57
1014 1018 6.974932 ACGTTTTAGATGTCGAGTCTACTA 57.025 37.500 6.91 0.00 0.00 1.82
1015 1019 6.770076 ACGTTTTAGATGTCGAGTCTACTAC 58.230 40.000 6.91 7.33 0.00 2.73
1016 1020 6.593382 ACGTTTTAGATGTCGAGTCTACTACT 59.407 38.462 6.91 0.00 42.80 2.57
1031 1035 8.638629 AGTCTACTACTCTACTTGTTGACAAT 57.361 34.615 0.00 0.00 37.53 2.71
1032 1036 9.080097 AGTCTACTACTCTACTTGTTGACAATT 57.920 33.333 0.00 0.00 37.53 2.32
1033 1037 9.694137 GTCTACTACTCTACTTGTTGACAATTT 57.306 33.333 0.00 0.00 36.04 1.82
1034 1038 9.909644 TCTACTACTCTACTTGTTGACAATTTC 57.090 33.333 0.00 0.00 35.02 2.17
1035 1039 7.964604 ACTACTCTACTTGTTGACAATTTCC 57.035 36.000 0.00 0.00 35.02 3.13
1036 1040 7.736893 ACTACTCTACTTGTTGACAATTTCCT 58.263 34.615 0.00 0.00 35.02 3.36
1037 1041 7.873505 ACTACTCTACTTGTTGACAATTTCCTC 59.126 37.037 0.00 0.00 35.02 3.71
1038 1042 6.591935 ACTCTACTTGTTGACAATTTCCTCA 58.408 36.000 0.00 0.00 35.02 3.86
1039 1043 6.708054 ACTCTACTTGTTGACAATTTCCTCAG 59.292 38.462 0.00 0.00 35.02 3.35
1040 1044 6.826668 TCTACTTGTTGACAATTTCCTCAGA 58.173 36.000 0.00 0.00 35.02 3.27
1041 1045 7.279615 TCTACTTGTTGACAATTTCCTCAGAA 58.720 34.615 0.00 0.00 35.02 3.02
1042 1046 6.773976 ACTTGTTGACAATTTCCTCAGAAA 57.226 33.333 0.00 0.00 45.78 2.52
1043 1047 6.564328 ACTTGTTGACAATTTCCTCAGAAAC 58.436 36.000 0.00 0.00 44.57 2.78
1044 1048 5.168526 TGTTGACAATTTCCTCAGAAACG 57.831 39.130 0.00 0.00 44.57 3.60
1045 1049 4.036262 TGTTGACAATTTCCTCAGAAACGG 59.964 41.667 0.00 0.00 44.57 4.44
1046 1050 2.552315 TGACAATTTCCTCAGAAACGGC 59.448 45.455 0.00 0.00 44.57 5.68
1047 1051 2.552315 GACAATTTCCTCAGAAACGGCA 59.448 45.455 0.00 0.00 44.57 5.69
1048 1052 2.955660 ACAATTTCCTCAGAAACGGCAA 59.044 40.909 0.00 0.00 44.57 4.52
1049 1053 3.573967 ACAATTTCCTCAGAAACGGCAAT 59.426 39.130 0.00 0.00 44.57 3.56
1050 1054 4.039124 ACAATTTCCTCAGAAACGGCAATT 59.961 37.500 0.00 0.00 44.57 2.32
1051 1055 4.871933 ATTTCCTCAGAAACGGCAATTT 57.128 36.364 0.00 0.00 44.57 1.82
1052 1056 3.915437 TTCCTCAGAAACGGCAATTTC 57.085 42.857 4.21 4.21 38.62 2.17
1054 1058 3.486383 TCCTCAGAAACGGCAATTTCTT 58.514 40.909 10.79 0.00 44.74 2.52
1055 1059 3.502211 TCCTCAGAAACGGCAATTTCTTC 59.498 43.478 10.79 0.00 44.74 2.87
1056 1060 3.503748 CCTCAGAAACGGCAATTTCTTCT 59.496 43.478 10.79 0.00 44.74 2.85
1057 1061 4.378874 CCTCAGAAACGGCAATTTCTTCTC 60.379 45.833 10.79 0.00 44.74 2.87
1058 1062 4.389374 TCAGAAACGGCAATTTCTTCTCT 58.611 39.130 10.79 0.00 44.74 3.10
1059 1063 4.821805 TCAGAAACGGCAATTTCTTCTCTT 59.178 37.500 10.79 0.00 44.74 2.85
1060 1064 5.299279 TCAGAAACGGCAATTTCTTCTCTTT 59.701 36.000 10.79 0.00 44.74 2.52
1061 1065 5.979517 CAGAAACGGCAATTTCTTCTCTTTT 59.020 36.000 10.79 0.00 44.74 2.27
1062 1066 6.476706 CAGAAACGGCAATTTCTTCTCTTTTT 59.523 34.615 10.79 0.00 44.74 1.94
1086 1090 6.724893 TTAGGAAAGAAGAAACTTTTGGGG 57.275 37.500 0.00 0.00 39.71 4.96
1087 1091 3.967326 AGGAAAGAAGAAACTTTTGGGGG 59.033 43.478 0.00 0.00 39.71 5.40
1088 1092 3.494398 GGAAAGAAGAAACTTTTGGGGGC 60.494 47.826 0.00 0.00 39.71 5.80
1089 1093 2.470057 AGAAGAAACTTTTGGGGGCA 57.530 45.000 0.00 0.00 0.00 5.36
1090 1094 2.758130 AGAAGAAACTTTTGGGGGCAA 58.242 42.857 0.00 0.00 0.00 4.52
1091 1095 3.111484 AGAAGAAACTTTTGGGGGCAAA 58.889 40.909 0.00 0.00 0.00 3.68
1092 1096 3.521531 AGAAGAAACTTTTGGGGGCAAAA 59.478 39.130 0.00 0.00 33.58 2.44
1093 1097 4.018870 AGAAGAAACTTTTGGGGGCAAAAA 60.019 37.500 0.00 0.00 34.18 1.94
1121 1125 5.303971 CAAGATTTGCCATCTCCTACTAGG 58.696 45.833 0.00 0.00 36.46 3.02
1122 1126 4.561752 AGATTTGCCATCTCCTACTAGGT 58.438 43.478 1.83 0.00 36.53 3.08
1123 1127 5.716979 AGATTTGCCATCTCCTACTAGGTA 58.283 41.667 1.83 0.00 36.53 3.08
1124 1128 6.143915 AGATTTGCCATCTCCTACTAGGTAA 58.856 40.000 1.83 0.00 36.53 2.85
1125 1129 6.615726 AGATTTGCCATCTCCTACTAGGTAAA 59.384 38.462 1.83 0.00 38.10 2.01
1126 1130 5.871396 TTGCCATCTCCTACTAGGTAAAG 57.129 43.478 1.83 0.00 36.53 1.85
1127 1131 4.880164 TGCCATCTCCTACTAGGTAAAGT 58.120 43.478 1.83 0.00 36.53 2.66
1128 1132 6.022107 TGCCATCTCCTACTAGGTAAAGTA 57.978 41.667 1.83 0.00 36.53 2.24
1129 1133 6.437755 TGCCATCTCCTACTAGGTAAAGTAA 58.562 40.000 1.83 0.00 36.53 2.24
1130 1134 6.323225 TGCCATCTCCTACTAGGTAAAGTAAC 59.677 42.308 1.83 0.00 36.53 2.50
1131 1135 6.323225 GCCATCTCCTACTAGGTAAAGTAACA 59.677 42.308 1.83 0.00 36.53 2.41
1132 1136 7.147776 GCCATCTCCTACTAGGTAAAGTAACAA 60.148 40.741 1.83 0.00 36.53 2.83
1133 1137 8.755977 CCATCTCCTACTAGGTAAAGTAACAAA 58.244 37.037 1.83 0.00 36.53 2.83
1242 1246 3.826754 TACGAGGAGCTGCTGCGG 61.827 66.667 14.48 13.67 45.42 5.69
1260 1264 4.790861 GACCCCGCCGAGAACGTC 62.791 72.222 0.00 0.00 37.88 4.34
1282 1286 3.902162 AAGCTCGCGCGGTTCGTTA 62.902 57.895 31.69 7.55 42.32 3.18
1285 1289 4.703799 TCGCGCGGTTCGTTAGCA 62.704 61.111 31.69 2.53 41.07 3.49
1297 1301 1.429148 CGTTAGCATGCCGTTCTCCC 61.429 60.000 15.66 0.00 0.00 4.30
1361 1365 3.011635 GCAGCCTCGAGAGCCTGAA 62.012 63.158 23.10 0.00 0.00 3.02
1364 1368 0.613292 AGCCTCGAGAGCCTGAAGAA 60.613 55.000 15.71 0.00 0.00 2.52
1366 1370 0.174617 CCTCGAGAGCCTGAAGAACC 59.825 60.000 15.71 0.00 0.00 3.62
1367 1371 0.891373 CTCGAGAGCCTGAAGAACCA 59.109 55.000 6.58 0.00 0.00 3.67
1386 1390 0.995024 AGGAGGTGAACAGGAATGGG 59.005 55.000 0.00 0.00 0.00 4.00
1537 1541 0.038166 GGGGCTCACATTCCAGTGAA 59.962 55.000 0.00 0.00 46.90 3.18
1539 1543 1.168714 GGCTCACATTCCAGTGAACC 58.831 55.000 1.31 1.31 46.90 3.62
1658 1757 2.202703 TACACGATCACGCTTCCGCA 62.203 55.000 0.00 0.00 43.96 5.69
1684 1838 8.579682 TCACACGATATTCATCAGATTACTTG 57.420 34.615 0.00 0.00 0.00 3.16
1725 1880 3.335534 GAAACGCACACCGCTCGT 61.336 61.111 0.00 0.00 41.76 4.18
1733 1888 1.265568 CACACCGCTCGTATACACAC 58.734 55.000 3.32 0.00 0.00 3.82
1734 1889 0.171903 ACACCGCTCGTATACACACC 59.828 55.000 3.32 0.00 0.00 4.16
1735 1890 0.864377 CACCGCTCGTATACACACCG 60.864 60.000 3.32 0.00 0.00 4.94
1739 1896 1.823828 GCTCGTATACACACCGACAG 58.176 55.000 3.32 0.00 0.00 3.51
1746 1903 3.705638 CACACCGACAGCGCAGTG 61.706 66.667 11.27 11.32 36.29 3.66
1753 1910 0.456824 CGACAGCGCAGTGACAGTAT 60.457 55.000 11.27 0.00 0.00 2.12
1967 2128 3.550431 ACGTGCCACACTGCCTCT 61.550 61.111 0.00 0.00 31.34 3.69
1985 2146 1.900486 TCTTCCTCGTTTCCCTCCTTC 59.100 52.381 0.00 0.00 0.00 3.46
1997 2158 1.208706 CCTCCTTCCCCTTCTCCTTC 58.791 60.000 0.00 0.00 0.00 3.46
2274 2443 0.316841 CGGTTGGGAATTGGTGTTGG 59.683 55.000 0.00 0.00 0.00 3.77
2312 2481 0.246360 GTGGGAAAAATGGCGAAGGG 59.754 55.000 0.00 0.00 0.00 3.95
2313 2482 0.902516 TGGGAAAAATGGCGAAGGGG 60.903 55.000 0.00 0.00 0.00 4.79
2390 2559 1.153997 GTTCGAGAGGCACGGAGAC 60.154 63.158 0.00 0.00 0.00 3.36
2428 2617 5.069781 GGAGAAGCTTCTGGAGTATGTATGT 59.930 44.000 33.07 4.13 37.73 2.29
2429 2618 6.265649 GGAGAAGCTTCTGGAGTATGTATGTA 59.734 42.308 33.07 0.00 37.73 2.29
2430 2619 7.039363 GGAGAAGCTTCTGGAGTATGTATGTAT 60.039 40.741 33.07 3.00 37.73 2.29
2431 2620 7.665690 AGAAGCTTCTGGAGTATGTATGTATG 58.334 38.462 27.96 0.00 35.89 2.39
2432 2621 6.352016 AGCTTCTGGAGTATGTATGTATGG 57.648 41.667 0.00 0.00 0.00 2.74
2433 2622 5.247110 AGCTTCTGGAGTATGTATGTATGGG 59.753 44.000 0.00 0.00 0.00 4.00
2434 2623 5.012148 GCTTCTGGAGTATGTATGTATGGGT 59.988 44.000 0.00 0.00 0.00 4.51
2435 2624 6.210784 GCTTCTGGAGTATGTATGTATGGGTA 59.789 42.308 0.00 0.00 0.00 3.69
2436 2625 7.256190 GCTTCTGGAGTATGTATGTATGGGTAA 60.256 40.741 0.00 0.00 0.00 2.85
2437 2626 8.555896 TTCTGGAGTATGTATGTATGGGTAAA 57.444 34.615 0.00 0.00 0.00 2.01
2438 2627 8.190326 TCTGGAGTATGTATGTATGGGTAAAG 57.810 38.462 0.00 0.00 0.00 1.85
2439 2628 6.765403 TGGAGTATGTATGTATGGGTAAAGC 58.235 40.000 0.00 0.00 0.00 3.51
2440 2629 6.557253 TGGAGTATGTATGTATGGGTAAAGCT 59.443 38.462 0.00 0.00 0.00 3.74
2441 2630 7.071950 TGGAGTATGTATGTATGGGTAAAGCTT 59.928 37.037 0.00 0.00 0.00 3.74
2442 2631 7.603024 GGAGTATGTATGTATGGGTAAAGCTTC 59.397 40.741 0.00 0.00 0.00 3.86
2443 2632 7.152645 AGTATGTATGTATGGGTAAAGCTTCG 58.847 38.462 0.00 0.00 0.00 3.79
2444 2633 5.601583 TGTATGTATGGGTAAAGCTTCGA 57.398 39.130 0.00 0.00 0.00 3.71
2445 2634 6.169557 TGTATGTATGGGTAAAGCTTCGAT 57.830 37.500 0.00 0.00 0.00 3.59
2446 2635 6.588204 TGTATGTATGGGTAAAGCTTCGATT 58.412 36.000 0.00 0.00 0.00 3.34
2447 2636 7.051623 TGTATGTATGGGTAAAGCTTCGATTT 58.948 34.615 0.00 0.00 0.00 2.17
2448 2637 7.554835 TGTATGTATGGGTAAAGCTTCGATTTT 59.445 33.333 0.00 0.00 0.00 1.82
2449 2638 6.827586 TGTATGGGTAAAGCTTCGATTTTT 57.172 33.333 0.00 0.00 0.00 1.94
2493 2682 8.795842 TTTTAGCAATTTCGGAAACTATAGGA 57.204 30.769 5.12 0.00 0.00 2.94
2494 2683 7.781548 TTAGCAATTTCGGAAACTATAGGAC 57.218 36.000 5.12 0.00 0.00 3.85
2495 2684 4.809426 AGCAATTTCGGAAACTATAGGACG 59.191 41.667 5.12 3.29 0.00 4.79
2496 2685 4.569564 GCAATTTCGGAAACTATAGGACGT 59.430 41.667 5.12 0.00 0.00 4.34
2497 2686 5.750067 GCAATTTCGGAAACTATAGGACGTA 59.250 40.000 5.12 0.00 0.00 3.57
2498 2687 6.256321 GCAATTTCGGAAACTATAGGACGTAA 59.744 38.462 5.12 3.93 0.00 3.18
2499 2688 7.042254 GCAATTTCGGAAACTATAGGACGTAAT 60.042 37.037 5.12 5.86 0.00 1.89
2500 2689 7.941795 ATTTCGGAAACTATAGGACGTAATG 57.058 36.000 5.12 0.00 0.00 1.90
2501 2690 4.863491 TCGGAAACTATAGGACGTAATGC 58.137 43.478 4.43 0.00 0.00 3.56
2502 2691 4.338964 TCGGAAACTATAGGACGTAATGCA 59.661 41.667 4.43 0.00 0.00 3.96
2503 2692 5.045215 CGGAAACTATAGGACGTAATGCAA 58.955 41.667 4.43 0.00 0.00 4.08
2504 2693 5.521010 CGGAAACTATAGGACGTAATGCAAA 59.479 40.000 4.43 0.00 0.00 3.68
2505 2694 6.036300 CGGAAACTATAGGACGTAATGCAAAA 59.964 38.462 4.43 0.00 0.00 2.44
2506 2695 7.413219 CGGAAACTATAGGACGTAATGCAAAAA 60.413 37.037 4.43 0.00 0.00 1.94
2525 2714 4.841443 AAAAACCAAAACTAGTAGCCCG 57.159 40.909 0.00 0.00 0.00 6.13
2526 2715 3.497103 AAACCAAAACTAGTAGCCCGT 57.503 42.857 0.00 0.00 0.00 5.28
2527 2716 2.756840 ACCAAAACTAGTAGCCCGTC 57.243 50.000 0.00 0.00 0.00 4.79
2528 2717 1.067354 ACCAAAACTAGTAGCCCGTCG 60.067 52.381 0.00 0.00 0.00 5.12
2529 2718 1.636988 CAAAACTAGTAGCCCGTCGG 58.363 55.000 3.60 3.60 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 152 6.849085 TTGCATTTGCTAAATCCTAAAGGA 57.151 33.333 0.14 0.14 44.90 3.36
167 170 3.068560 GTTCACACCATTTGCATTGCAT 58.931 40.909 12.95 0.00 38.76 3.96
231 234 6.909550 AGAGGGCAACACATTTAATAAACA 57.090 33.333 0.00 0.00 39.74 2.83
232 235 9.699703 TTTTAGAGGGCAACACATTTAATAAAC 57.300 29.630 0.00 0.00 39.74 2.01
270 273 1.251251 AAAGCTTGGCCAGTAGCAAG 58.749 50.000 27.17 13.23 46.50 4.01
280 283 2.663119 CACAATTCGCTAAAAGCTTGGC 59.337 45.455 0.00 4.44 39.60 4.52
320 323 8.364142 CCAACTGTTTTGGGATTAAATGAACTA 58.636 33.333 0.00 0.00 35.96 2.24
334 337 4.082125 AGGAAGATAGCCAACTGTTTTGG 58.918 43.478 0.00 0.00 42.37 3.28
365 368 7.680730 TCACAGCTTCTAGAACCTAATCTTTT 58.319 34.615 0.00 0.00 0.00 2.27
370 373 9.553064 CAATATTCACAGCTTCTAGAACCTAAT 57.447 33.333 0.00 0.95 0.00 1.73
373 376 5.819901 GCAATATTCACAGCTTCTAGAACCT 59.180 40.000 0.00 0.00 0.00 3.50
383 386 3.181479 CCATGCTTGCAATATTCACAGCT 60.181 43.478 0.00 0.00 0.00 4.24
386 389 6.904463 ATATCCATGCTTGCAATATTCACA 57.096 33.333 0.00 0.00 0.00 3.58
403 407 9.599866 CTCACATGTCTACACTAAAAATATCCA 57.400 33.333 0.00 0.00 0.00 3.41
479 483 5.994250 AGGTATGTGTCAAGCTTGATGTAT 58.006 37.500 30.65 23.85 39.73 2.29
560 564 4.217550 CCGGTGTTTGGTAATCTGAAACAT 59.782 41.667 0.00 0.00 40.63 2.71
614 618 4.102210 AGGTGTCACTGATCTCCAATATGG 59.898 45.833 2.35 0.00 39.43 2.74
626 630 0.114364 TCCAGCCTAGGTGTCACTGA 59.886 55.000 11.31 0.00 0.00 3.41
629 633 1.066787 GTTCTCCAGCCTAGGTGTCAC 60.067 57.143 11.31 0.00 0.00 3.67
630 634 1.267121 GTTCTCCAGCCTAGGTGTCA 58.733 55.000 11.31 0.00 0.00 3.58
631 635 1.267121 TGTTCTCCAGCCTAGGTGTC 58.733 55.000 11.31 0.00 0.00 3.67
632 636 1.348036 GTTGTTCTCCAGCCTAGGTGT 59.652 52.381 11.31 0.00 0.00 4.16
633 637 1.673033 CGTTGTTCTCCAGCCTAGGTG 60.673 57.143 11.31 7.47 0.00 4.00
634 638 0.608640 CGTTGTTCTCCAGCCTAGGT 59.391 55.000 11.31 0.00 0.00 3.08
635 639 0.108138 CCGTTGTTCTCCAGCCTAGG 60.108 60.000 3.67 3.67 0.00 3.02
636 640 0.895530 TCCGTTGTTCTCCAGCCTAG 59.104 55.000 0.00 0.00 0.00 3.02
637 641 0.606604 GTCCGTTGTTCTCCAGCCTA 59.393 55.000 0.00 0.00 0.00 3.93
638 642 1.122019 AGTCCGTTGTTCTCCAGCCT 61.122 55.000 0.00 0.00 0.00 4.58
639 643 0.951040 CAGTCCGTTGTTCTCCAGCC 60.951 60.000 0.00 0.00 0.00 4.85
640 644 0.249911 ACAGTCCGTTGTTCTCCAGC 60.250 55.000 0.00 0.00 0.00 4.85
641 645 1.502231 CACAGTCCGTTGTTCTCCAG 58.498 55.000 0.00 0.00 0.00 3.86
642 646 0.531974 GCACAGTCCGTTGTTCTCCA 60.532 55.000 0.00 0.00 0.00 3.86
643 647 0.531974 TGCACAGTCCGTTGTTCTCC 60.532 55.000 0.00 0.00 0.00 3.71
644 648 0.861837 CTGCACAGTCCGTTGTTCTC 59.138 55.000 0.00 0.00 0.00 2.87
645 649 0.464036 TCTGCACAGTCCGTTGTTCT 59.536 50.000 0.00 0.00 0.00 3.01
646 650 0.582005 GTCTGCACAGTCCGTTGTTC 59.418 55.000 0.00 0.00 0.00 3.18
647 651 0.107897 TGTCTGCACAGTCCGTTGTT 60.108 50.000 0.00 0.00 0.00 2.83
648 652 0.106708 ATGTCTGCACAGTCCGTTGT 59.893 50.000 0.00 0.00 35.41 3.32
649 653 2.078849 TATGTCTGCACAGTCCGTTG 57.921 50.000 0.00 0.00 35.41 4.10
650 654 2.037251 AGTTATGTCTGCACAGTCCGTT 59.963 45.455 0.00 0.00 35.41 4.44
651 655 1.618837 AGTTATGTCTGCACAGTCCGT 59.381 47.619 0.00 0.00 35.41 4.69
652 656 2.370281 AGTTATGTCTGCACAGTCCG 57.630 50.000 0.00 0.00 35.41 4.79
653 657 4.065088 TGAAAGTTATGTCTGCACAGTCC 58.935 43.478 0.00 0.00 35.41 3.85
654 658 5.673337 TTGAAAGTTATGTCTGCACAGTC 57.327 39.130 0.00 0.00 35.41 3.51
655 659 4.023707 GCTTGAAAGTTATGTCTGCACAGT 60.024 41.667 0.00 0.00 35.41 3.55
656 660 4.214971 AGCTTGAAAGTTATGTCTGCACAG 59.785 41.667 0.00 0.00 35.41 3.66
657 661 4.023792 CAGCTTGAAAGTTATGTCTGCACA 60.024 41.667 0.00 0.00 36.78 4.57
658 662 4.470462 CAGCTTGAAAGTTATGTCTGCAC 58.530 43.478 0.00 0.00 0.00 4.57
659 663 3.503363 CCAGCTTGAAAGTTATGTCTGCA 59.497 43.478 0.00 0.00 0.00 4.41
660 664 3.671702 GCCAGCTTGAAAGTTATGTCTGC 60.672 47.826 0.00 0.00 0.00 4.26
661 665 3.119708 GGCCAGCTTGAAAGTTATGTCTG 60.120 47.826 0.00 0.00 0.00 3.51
662 666 3.084786 GGCCAGCTTGAAAGTTATGTCT 58.915 45.455 0.00 0.00 0.00 3.41
663 667 2.164422 GGGCCAGCTTGAAAGTTATGTC 59.836 50.000 4.39 0.00 0.00 3.06
664 668 2.171003 GGGCCAGCTTGAAAGTTATGT 58.829 47.619 4.39 0.00 0.00 2.29
665 669 1.478105 GGGGCCAGCTTGAAAGTTATG 59.522 52.381 4.39 0.00 0.00 1.90
666 670 1.852633 GGGGCCAGCTTGAAAGTTAT 58.147 50.000 4.39 0.00 0.00 1.89
667 671 0.608035 CGGGGCCAGCTTGAAAGTTA 60.608 55.000 4.39 0.00 0.00 2.24
668 672 1.903404 CGGGGCCAGCTTGAAAGTT 60.903 57.895 4.39 0.00 0.00 2.66
669 673 2.282462 CGGGGCCAGCTTGAAAGT 60.282 61.111 4.39 0.00 0.00 2.66
670 674 3.752339 GCGGGGCCAGCTTGAAAG 61.752 66.667 21.95 0.00 0.00 2.62
681 685 2.481471 GCAAGTAGAATGGCGGGGC 61.481 63.158 0.00 0.00 0.00 5.80
682 686 1.077787 TGCAAGTAGAATGGCGGGG 60.078 57.895 0.00 0.00 0.00 5.73
683 687 1.376609 GGTGCAAGTAGAATGGCGGG 61.377 60.000 0.00 0.00 0.00 6.13
684 688 1.705337 CGGTGCAAGTAGAATGGCGG 61.705 60.000 0.00 0.00 0.00 6.13
685 689 1.705337 CCGGTGCAAGTAGAATGGCG 61.705 60.000 0.00 0.00 0.00 5.69
686 690 0.392461 TCCGGTGCAAGTAGAATGGC 60.392 55.000 0.00 0.00 0.00 4.40
687 691 1.656652 CTCCGGTGCAAGTAGAATGG 58.343 55.000 0.00 0.00 0.00 3.16
688 692 1.656652 CCTCCGGTGCAAGTAGAATG 58.343 55.000 0.00 0.00 0.00 2.67
689 693 0.541863 CCCTCCGGTGCAAGTAGAAT 59.458 55.000 0.00 0.00 0.00 2.40
690 694 0.543410 TCCCTCCGGTGCAAGTAGAA 60.543 55.000 0.00 0.00 0.00 2.10
691 695 0.970937 CTCCCTCCGGTGCAAGTAGA 60.971 60.000 0.00 0.00 0.00 2.59
692 696 1.258445 ACTCCCTCCGGTGCAAGTAG 61.258 60.000 0.00 0.00 0.00 2.57
693 697 0.040058 TACTCCCTCCGGTGCAAGTA 59.960 55.000 0.00 6.74 0.00 2.24
694 698 1.229082 TACTCCCTCCGGTGCAAGT 60.229 57.895 0.00 7.75 0.00 3.16
695 699 1.218316 GTACTCCCTCCGGTGCAAG 59.782 63.158 0.00 1.42 0.00 4.01
696 700 0.907704 ATGTACTCCCTCCGGTGCAA 60.908 55.000 0.00 0.00 32.49 4.08
697 701 0.907704 AATGTACTCCCTCCGGTGCA 60.908 55.000 0.00 0.00 33.18 4.57
698 702 1.117150 TAATGTACTCCCTCCGGTGC 58.883 55.000 0.00 0.00 0.00 5.01
699 703 3.641906 AGAATAATGTACTCCCTCCGGTG 59.358 47.826 0.00 0.00 0.00 4.94
700 704 3.641906 CAGAATAATGTACTCCCTCCGGT 59.358 47.826 0.00 0.00 0.00 5.28
701 705 3.006967 CCAGAATAATGTACTCCCTCCGG 59.993 52.174 0.00 0.00 0.00 5.14
702 706 3.006967 CCCAGAATAATGTACTCCCTCCG 59.993 52.174 0.00 0.00 0.00 4.63
703 707 3.974642 ACCCAGAATAATGTACTCCCTCC 59.025 47.826 0.00 0.00 0.00 4.30
704 708 5.632034 AACCCAGAATAATGTACTCCCTC 57.368 43.478 0.00 0.00 0.00 4.30
705 709 5.340027 CCAAACCCAGAATAATGTACTCCCT 60.340 44.000 0.00 0.00 0.00 4.20
706 710 4.887655 CCAAACCCAGAATAATGTACTCCC 59.112 45.833 0.00 0.00 0.00 4.30
707 711 4.338400 GCCAAACCCAGAATAATGTACTCC 59.662 45.833 0.00 0.00 0.00 3.85
708 712 5.066505 CAGCCAAACCCAGAATAATGTACTC 59.933 44.000 0.00 0.00 0.00 2.59
709 713 4.949856 CAGCCAAACCCAGAATAATGTACT 59.050 41.667 0.00 0.00 0.00 2.73
710 714 4.705023 ACAGCCAAACCCAGAATAATGTAC 59.295 41.667 0.00 0.00 0.00 2.90
711 715 4.929479 ACAGCCAAACCCAGAATAATGTA 58.071 39.130 0.00 0.00 0.00 2.29
712 716 3.778265 ACAGCCAAACCCAGAATAATGT 58.222 40.909 0.00 0.00 0.00 2.71
713 717 5.913137 TTACAGCCAAACCCAGAATAATG 57.087 39.130 0.00 0.00 0.00 1.90
714 718 8.782137 ATTATTACAGCCAAACCCAGAATAAT 57.218 30.769 0.00 0.00 0.00 1.28
715 719 9.127277 GTATTATTACAGCCAAACCCAGAATAA 57.873 33.333 0.00 0.00 0.00 1.40
716 720 8.499406 AGTATTATTACAGCCAAACCCAGAATA 58.501 33.333 0.00 0.00 0.00 1.75
717 721 7.354312 AGTATTATTACAGCCAAACCCAGAAT 58.646 34.615 0.00 0.00 0.00 2.40
718 722 6.727394 AGTATTATTACAGCCAAACCCAGAA 58.273 36.000 0.00 0.00 0.00 3.02
719 723 6.321821 AGTATTATTACAGCCAAACCCAGA 57.678 37.500 0.00 0.00 0.00 3.86
720 724 8.514330 TTTAGTATTATTACAGCCAAACCCAG 57.486 34.615 0.00 0.00 0.00 4.45
721 725 8.880991 TTTTAGTATTATTACAGCCAAACCCA 57.119 30.769 0.00 0.00 0.00 4.51
744 748 9.466497 TGAAACCTAGAATTCTAGCATGAATTT 57.534 29.630 29.70 21.34 43.97 1.82
745 749 8.897752 GTGAAACCTAGAATTCTAGCATGAATT 58.102 33.333 29.70 18.66 45.83 2.17
746 750 8.270744 AGTGAAACCTAGAATTCTAGCATGAAT 58.729 33.333 29.70 15.51 43.47 2.57
747 751 7.624549 AGTGAAACCTAGAATTCTAGCATGAA 58.375 34.615 29.70 15.75 43.47 2.57
748 752 7.187824 AGTGAAACCTAGAATTCTAGCATGA 57.812 36.000 29.70 13.76 43.47 3.07
749 753 6.481644 GGAGTGAAACCTAGAATTCTAGCATG 59.518 42.308 29.70 20.91 43.47 4.06
750 754 6.587273 GGAGTGAAACCTAGAATTCTAGCAT 58.413 40.000 29.70 19.79 43.47 3.79
751 755 5.394224 CGGAGTGAAACCTAGAATTCTAGCA 60.394 44.000 29.70 21.20 43.47 3.49
752 756 5.044558 CGGAGTGAAACCTAGAATTCTAGC 58.955 45.833 29.70 19.29 43.47 3.42
753 757 6.095720 AGTCGGAGTGAAACCTAGAATTCTAG 59.904 42.308 28.61 28.61 44.22 2.43
754 758 5.950549 AGTCGGAGTGAAACCTAGAATTCTA 59.049 40.000 14.42 14.42 37.80 2.10
755 759 4.773149 AGTCGGAGTGAAACCTAGAATTCT 59.227 41.667 13.56 13.56 37.80 2.40
756 760 5.074584 AGTCGGAGTGAAACCTAGAATTC 57.925 43.478 0.00 0.00 37.80 2.17
757 761 5.238583 CAAGTCGGAGTGAAACCTAGAATT 58.761 41.667 0.00 0.00 37.80 2.17
758 762 4.822026 CAAGTCGGAGTGAAACCTAGAAT 58.178 43.478 0.00 0.00 37.80 2.40
759 763 3.554337 GCAAGTCGGAGTGAAACCTAGAA 60.554 47.826 0.00 0.00 37.80 2.10
760 764 2.029290 GCAAGTCGGAGTGAAACCTAGA 60.029 50.000 0.00 0.00 37.80 2.43
761 765 2.288825 TGCAAGTCGGAGTGAAACCTAG 60.289 50.000 0.00 0.00 37.80 3.02
762 766 1.689813 TGCAAGTCGGAGTGAAACCTA 59.310 47.619 0.00 0.00 37.80 3.08
763 767 0.468226 TGCAAGTCGGAGTGAAACCT 59.532 50.000 0.00 0.00 37.80 3.50
764 768 0.586802 GTGCAAGTCGGAGTGAAACC 59.413 55.000 0.00 0.00 37.80 3.27
765 769 1.261619 CAGTGCAAGTCGGAGTGAAAC 59.738 52.381 0.00 0.00 38.63 2.78
766 770 1.134521 ACAGTGCAAGTCGGAGTGAAA 60.135 47.619 0.00 0.00 38.63 2.69
767 771 0.464036 ACAGTGCAAGTCGGAGTGAA 59.536 50.000 0.00 0.00 38.63 3.18
768 772 0.032130 GACAGTGCAAGTCGGAGTGA 59.968 55.000 4.96 0.00 38.63 3.41
769 773 0.249447 TGACAGTGCAAGTCGGAGTG 60.249 55.000 13.86 0.00 41.91 3.51
770 774 0.681733 ATGACAGTGCAAGTCGGAGT 59.318 50.000 13.86 0.77 38.83 3.85
771 775 1.073964 CATGACAGTGCAAGTCGGAG 58.926 55.000 13.86 4.81 38.83 4.63
772 776 0.950555 GCATGACAGTGCAAGTCGGA 60.951 55.000 13.86 0.82 44.43 4.55
773 777 1.499056 GCATGACAGTGCAAGTCGG 59.501 57.895 13.86 10.39 44.43 4.79
780 784 6.428385 ACTAAAATTCTAGCATGACAGTGC 57.572 37.500 0.00 2.70 45.38 4.40
881 885 9.503399 AATGTACTCTCTCCGTTCTAAATTTTT 57.497 29.630 0.00 0.00 0.00 1.94
887 891 9.582431 CAAAATAATGTACTCTCTCCGTTCTAA 57.418 33.333 0.00 0.00 0.00 2.10
888 892 8.195436 CCAAAATAATGTACTCTCTCCGTTCTA 58.805 37.037 0.00 0.00 0.00 2.10
889 893 7.042335 CCAAAATAATGTACTCTCTCCGTTCT 58.958 38.462 0.00 0.00 0.00 3.01
890 894 6.258068 CCCAAAATAATGTACTCTCTCCGTTC 59.742 42.308 0.00 0.00 0.00 3.95
891 895 6.113411 CCCAAAATAATGTACTCTCTCCGTT 58.887 40.000 0.00 0.00 0.00 4.44
892 896 5.189145 ACCCAAAATAATGTACTCTCTCCGT 59.811 40.000 0.00 0.00 0.00 4.69
893 897 5.671493 ACCCAAAATAATGTACTCTCTCCG 58.329 41.667 0.00 0.00 0.00 4.63
894 898 6.318900 CCAACCCAAAATAATGTACTCTCTCC 59.681 42.308 0.00 0.00 0.00 3.71
895 899 6.318900 CCCAACCCAAAATAATGTACTCTCTC 59.681 42.308 0.00 0.00 0.00 3.20
896 900 6.187682 CCCAACCCAAAATAATGTACTCTCT 58.812 40.000 0.00 0.00 0.00 3.10
897 901 5.163550 GCCCAACCCAAAATAATGTACTCTC 60.164 44.000 0.00 0.00 0.00 3.20
898 902 4.709886 GCCCAACCCAAAATAATGTACTCT 59.290 41.667 0.00 0.00 0.00 3.24
899 903 4.709886 AGCCCAACCCAAAATAATGTACTC 59.290 41.667 0.00 0.00 0.00 2.59
900 904 4.466015 CAGCCCAACCCAAAATAATGTACT 59.534 41.667 0.00 0.00 0.00 2.73
901 905 4.754322 CAGCCCAACCCAAAATAATGTAC 58.246 43.478 0.00 0.00 0.00 2.90
902 906 3.196685 GCAGCCCAACCCAAAATAATGTA 59.803 43.478 0.00 0.00 0.00 2.29
903 907 2.027285 GCAGCCCAACCCAAAATAATGT 60.027 45.455 0.00 0.00 0.00 2.71
904 908 2.027377 TGCAGCCCAACCCAAAATAATG 60.027 45.455 0.00 0.00 0.00 1.90
905 909 2.264455 TGCAGCCCAACCCAAAATAAT 58.736 42.857 0.00 0.00 0.00 1.28
906 910 1.722034 TGCAGCCCAACCCAAAATAA 58.278 45.000 0.00 0.00 0.00 1.40
907 911 1.346068 GTTGCAGCCCAACCCAAAATA 59.654 47.619 6.58 0.00 46.44 1.40
908 912 0.108396 GTTGCAGCCCAACCCAAAAT 59.892 50.000 6.58 0.00 46.44 1.82
909 913 1.524482 GTTGCAGCCCAACCCAAAA 59.476 52.632 6.58 0.00 46.44 2.44
910 914 3.225235 GTTGCAGCCCAACCCAAA 58.775 55.556 6.58 0.00 46.44 3.28
920 924 2.415697 TTAAGAAAAGGCGTTGCAGC 57.584 45.000 0.00 0.00 0.00 5.25
921 925 7.043059 TGTTTATTTTAAGAAAAGGCGTTGCAG 60.043 33.333 0.00 0.00 33.22 4.41
922 926 6.757010 TGTTTATTTTAAGAAAAGGCGTTGCA 59.243 30.769 0.00 0.00 33.22 4.08
923 927 7.167831 TGTTTATTTTAAGAAAAGGCGTTGC 57.832 32.000 0.00 0.00 33.22 4.17
924 928 8.973378 TGATGTTTATTTTAAGAAAAGGCGTTG 58.027 29.630 0.00 0.00 33.22 4.10
925 929 9.535878 TTGATGTTTATTTTAAGAAAAGGCGTT 57.464 25.926 0.00 0.00 33.22 4.84
926 930 9.705290 ATTGATGTTTATTTTAAGAAAAGGCGT 57.295 25.926 0.00 0.00 33.22 5.68
938 942 9.853555 TGTTCGCAGATAATTGATGTTTATTTT 57.146 25.926 0.00 0.00 35.04 1.82
941 945 9.669353 GAATGTTCGCAGATAATTGATGTTTAT 57.331 29.630 0.00 0.00 35.04 1.40
942 946 7.850492 CGAATGTTCGCAGATAATTGATGTTTA 59.150 33.333 1.90 0.00 44.26 2.01
943 947 6.688385 CGAATGTTCGCAGATAATTGATGTTT 59.312 34.615 1.90 0.00 44.26 2.83
944 948 6.194463 CGAATGTTCGCAGATAATTGATGTT 58.806 36.000 1.90 0.00 44.26 2.71
945 949 5.741425 CGAATGTTCGCAGATAATTGATGT 58.259 37.500 1.90 0.00 44.26 3.06
960 964 5.868257 TGACATGTCTATTTGCGAATGTTC 58.132 37.500 25.55 0.46 0.00 3.18
961 965 5.878332 TGACATGTCTATTTGCGAATGTT 57.122 34.783 25.55 0.00 0.00 2.71
962 966 6.441093 AATGACATGTCTATTTGCGAATGT 57.559 33.333 25.55 0.00 0.00 2.71
963 967 7.110628 CGTAAATGACATGTCTATTTGCGAATG 59.889 37.037 35.75 22.68 41.78 2.67
964 968 7.011016 TCGTAAATGACATGTCTATTTGCGAAT 59.989 33.333 37.01 20.38 42.97 3.34
965 969 6.311690 TCGTAAATGACATGTCTATTTGCGAA 59.688 34.615 37.01 29.29 42.97 4.70
966 970 5.808030 TCGTAAATGACATGTCTATTTGCGA 59.192 36.000 36.41 36.41 43.24 5.10
967 971 6.031549 TCGTAAATGACATGTCTATTTGCG 57.968 37.500 34.73 34.73 41.32 4.85
968 972 6.408039 CGTTCGTAAATGACATGTCTATTTGC 59.592 38.462 27.97 26.26 0.00 3.68
969 973 7.453034 ACGTTCGTAAATGACATGTCTATTTG 58.547 34.615 27.97 19.54 0.00 2.32
970 974 7.591006 ACGTTCGTAAATGACATGTCTATTT 57.409 32.000 25.55 25.57 0.00 1.40
971 975 7.591006 AACGTTCGTAAATGACATGTCTATT 57.409 32.000 25.55 20.66 0.00 1.73
972 976 7.591006 AAACGTTCGTAAATGACATGTCTAT 57.409 32.000 25.55 14.66 0.00 1.98
973 977 7.410800 AAAACGTTCGTAAATGACATGTCTA 57.589 32.000 25.55 13.07 0.00 2.59
974 978 5.917541 AAACGTTCGTAAATGACATGTCT 57.082 34.783 25.55 9.24 0.00 3.41
975 979 7.503991 TCTAAAACGTTCGTAAATGACATGTC 58.496 34.615 19.27 19.27 0.00 3.06
976 980 7.410800 TCTAAAACGTTCGTAAATGACATGT 57.589 32.000 0.00 0.00 0.00 3.21
977 981 7.955324 ACATCTAAAACGTTCGTAAATGACATG 59.045 33.333 0.00 0.00 0.00 3.21
978 982 8.025243 ACATCTAAAACGTTCGTAAATGACAT 57.975 30.769 0.00 0.00 0.00 3.06
979 983 7.410800 ACATCTAAAACGTTCGTAAATGACA 57.589 32.000 0.00 0.00 0.00 3.58
980 984 6.671616 CGACATCTAAAACGTTCGTAAATGAC 59.328 38.462 0.00 0.11 0.00 3.06
981 985 6.581919 TCGACATCTAAAACGTTCGTAAATGA 59.418 34.615 0.00 0.00 0.00 2.57
982 986 6.744418 TCGACATCTAAAACGTTCGTAAATG 58.256 36.000 0.00 2.63 0.00 2.32
983 987 6.583806 ACTCGACATCTAAAACGTTCGTAAAT 59.416 34.615 0.00 0.00 0.00 1.40
984 988 5.914635 ACTCGACATCTAAAACGTTCGTAAA 59.085 36.000 0.00 0.00 0.00 2.01
985 989 5.451908 ACTCGACATCTAAAACGTTCGTAA 58.548 37.500 0.00 0.00 0.00 3.18
986 990 5.034554 ACTCGACATCTAAAACGTTCGTA 57.965 39.130 0.00 0.00 0.00 3.43
987 991 3.893720 ACTCGACATCTAAAACGTTCGT 58.106 40.909 0.00 0.00 0.00 3.85
988 992 4.156915 AGACTCGACATCTAAAACGTTCG 58.843 43.478 0.00 0.00 0.00 3.95
989 993 6.313252 AGTAGACTCGACATCTAAAACGTTC 58.687 40.000 0.00 0.00 30.52 3.95
990 994 6.251655 AGTAGACTCGACATCTAAAACGTT 57.748 37.500 0.00 0.00 30.52 3.99
991 995 5.876612 AGTAGACTCGACATCTAAAACGT 57.123 39.130 3.72 0.00 30.52 3.99
992 996 7.002816 AGTAGTAGACTCGACATCTAAAACG 57.997 40.000 3.72 0.00 29.95 3.60
1005 1009 8.732531 ATTGTCAACAAGTAGAGTAGTAGACTC 58.267 37.037 1.69 0.00 45.79 3.36
1006 1010 8.638629 ATTGTCAACAAGTAGAGTAGTAGACT 57.361 34.615 1.69 0.00 39.29 3.24
1007 1011 9.694137 AAATTGTCAACAAGTAGAGTAGTAGAC 57.306 33.333 1.69 0.00 39.47 2.59
1008 1012 9.909644 GAAATTGTCAACAAGTAGAGTAGTAGA 57.090 33.333 1.69 0.00 39.47 2.59
1009 1013 9.141400 GGAAATTGTCAACAAGTAGAGTAGTAG 57.859 37.037 1.69 0.00 39.47 2.57
1010 1014 8.867097 AGGAAATTGTCAACAAGTAGAGTAGTA 58.133 33.333 1.69 0.00 39.47 1.82
1011 1015 7.736893 AGGAAATTGTCAACAAGTAGAGTAGT 58.263 34.615 1.69 0.00 39.47 2.73
1012 1016 7.872993 TGAGGAAATTGTCAACAAGTAGAGTAG 59.127 37.037 1.69 0.00 39.47 2.57
1013 1017 7.732025 TGAGGAAATTGTCAACAAGTAGAGTA 58.268 34.615 1.69 0.00 39.47 2.59
1014 1018 6.591935 TGAGGAAATTGTCAACAAGTAGAGT 58.408 36.000 1.69 0.00 39.47 3.24
1015 1019 6.931281 TCTGAGGAAATTGTCAACAAGTAGAG 59.069 38.462 1.69 0.00 39.47 2.43
1016 1020 6.826668 TCTGAGGAAATTGTCAACAAGTAGA 58.173 36.000 1.69 0.00 39.47 2.59
1017 1021 7.496529 TTCTGAGGAAATTGTCAACAAGTAG 57.503 36.000 1.69 0.00 39.47 2.57
1018 1022 7.466725 CGTTTCTGAGGAAATTGTCAACAAGTA 60.467 37.037 1.69 0.00 42.45 2.24
1019 1023 6.564328 GTTTCTGAGGAAATTGTCAACAAGT 58.436 36.000 1.69 0.00 42.45 3.16
1020 1024 5.682862 CGTTTCTGAGGAAATTGTCAACAAG 59.317 40.000 1.69 0.00 42.45 3.16
1021 1025 5.449862 CCGTTTCTGAGGAAATTGTCAACAA 60.450 40.000 0.00 0.00 42.45 2.83
1022 1026 4.036262 CCGTTTCTGAGGAAATTGTCAACA 59.964 41.667 0.00 0.00 42.45 3.33
1023 1027 4.537015 CCGTTTCTGAGGAAATTGTCAAC 58.463 43.478 0.00 0.00 42.45 3.18
1024 1028 3.004315 GCCGTTTCTGAGGAAATTGTCAA 59.996 43.478 0.00 0.00 42.45 3.18
1025 1029 2.552315 GCCGTTTCTGAGGAAATTGTCA 59.448 45.455 0.00 0.00 42.45 3.58
1026 1030 2.552315 TGCCGTTTCTGAGGAAATTGTC 59.448 45.455 0.00 0.00 42.45 3.18
1027 1031 2.582052 TGCCGTTTCTGAGGAAATTGT 58.418 42.857 0.00 0.00 42.45 2.71
1028 1032 3.641437 TTGCCGTTTCTGAGGAAATTG 57.359 42.857 0.00 0.00 42.45 2.32
1029 1033 4.871933 AATTGCCGTTTCTGAGGAAATT 57.128 36.364 0.00 0.00 42.45 1.82
1030 1034 4.524328 AGAAATTGCCGTTTCTGAGGAAAT 59.476 37.500 11.34 0.00 44.46 2.17
1031 1035 3.888930 AGAAATTGCCGTTTCTGAGGAAA 59.111 39.130 11.34 0.00 44.46 3.13
1032 1036 3.486383 AGAAATTGCCGTTTCTGAGGAA 58.514 40.909 11.34 0.00 44.46 3.36
1033 1037 3.140325 AGAAATTGCCGTTTCTGAGGA 57.860 42.857 11.34 0.00 44.46 3.71
1034 1038 3.503748 AGAAGAAATTGCCGTTTCTGAGG 59.496 43.478 12.49 0.00 45.18 3.86
1035 1039 4.453819 AGAGAAGAAATTGCCGTTTCTGAG 59.546 41.667 12.49 0.00 45.18 3.35
1036 1040 4.389374 AGAGAAGAAATTGCCGTTTCTGA 58.611 39.130 12.49 0.00 45.18 3.27
1037 1041 4.756084 AGAGAAGAAATTGCCGTTTCTG 57.244 40.909 12.49 0.00 45.18 3.02
1039 1043 6.828502 AAAAAGAGAAGAAATTGCCGTTTC 57.171 33.333 3.44 3.44 38.16 2.78
1060 1064 8.044309 CCCCAAAAGTTTCTTCTTTCCTAAAAA 58.956 33.333 0.00 0.00 36.75 1.94
1061 1065 7.365206 CCCCCAAAAGTTTCTTCTTTCCTAAAA 60.365 37.037 0.00 0.00 36.75 1.52
1062 1066 6.099125 CCCCCAAAAGTTTCTTCTTTCCTAAA 59.901 38.462 0.00 0.00 36.75 1.85
1063 1067 5.600898 CCCCCAAAAGTTTCTTCTTTCCTAA 59.399 40.000 0.00 0.00 36.75 2.69
1064 1068 5.144832 CCCCCAAAAGTTTCTTCTTTCCTA 58.855 41.667 0.00 0.00 36.75 2.94
1065 1069 3.967326 CCCCCAAAAGTTTCTTCTTTCCT 59.033 43.478 0.00 0.00 36.75 3.36
1066 1070 3.494398 GCCCCCAAAAGTTTCTTCTTTCC 60.494 47.826 0.00 0.00 36.75 3.13
1067 1071 3.133901 TGCCCCCAAAAGTTTCTTCTTTC 59.866 43.478 0.00 0.00 36.75 2.62
1068 1072 3.111484 TGCCCCCAAAAGTTTCTTCTTT 58.889 40.909 0.00 0.00 39.00 2.52
1069 1073 2.758130 TGCCCCCAAAAGTTTCTTCTT 58.242 42.857 0.00 0.00 0.00 2.52
1070 1074 2.470057 TGCCCCCAAAAGTTTCTTCT 57.530 45.000 0.00 0.00 0.00 2.85
1071 1075 3.552132 TTTGCCCCCAAAAGTTTCTTC 57.448 42.857 0.00 0.00 37.97 2.87
1098 1102 5.163258 ACCTAGTAGGAGATGGCAAATCTTG 60.163 44.000 23.50 0.00 37.67 3.02
1099 1103 4.971924 ACCTAGTAGGAGATGGCAAATCTT 59.028 41.667 23.50 0.00 37.67 2.40
1100 1104 4.561752 ACCTAGTAGGAGATGGCAAATCT 58.438 43.478 23.50 0.99 37.67 2.40
1101 1105 4.965200 ACCTAGTAGGAGATGGCAAATC 57.035 45.455 23.50 0.00 37.67 2.17
1102 1106 6.387220 ACTTTACCTAGTAGGAGATGGCAAAT 59.613 38.462 23.50 0.00 37.67 2.32
1103 1107 5.724854 ACTTTACCTAGTAGGAGATGGCAAA 59.275 40.000 23.50 9.19 37.67 3.68
1104 1108 5.278061 ACTTTACCTAGTAGGAGATGGCAA 58.722 41.667 23.50 3.81 37.67 4.52
1105 1109 4.880164 ACTTTACCTAGTAGGAGATGGCA 58.120 43.478 23.50 0.00 37.67 4.92
1106 1110 6.323225 TGTTACTTTACCTAGTAGGAGATGGC 59.677 42.308 23.50 6.38 37.67 4.40
1107 1111 7.893124 TGTTACTTTACCTAGTAGGAGATGG 57.107 40.000 23.50 10.48 37.67 3.51
1132 1136 3.951037 GGCAAATCTTGGGGTTTGTTTTT 59.049 39.130 4.12 0.00 37.57 1.94
1133 1137 3.550820 GGCAAATCTTGGGGTTTGTTTT 58.449 40.909 4.12 0.00 37.57 2.43
1134 1138 2.484594 CGGCAAATCTTGGGGTTTGTTT 60.485 45.455 4.12 0.00 37.57 2.83
1135 1139 1.069978 CGGCAAATCTTGGGGTTTGTT 59.930 47.619 4.12 0.00 37.57 2.83
1136 1140 0.678950 CGGCAAATCTTGGGGTTTGT 59.321 50.000 4.12 0.00 37.57 2.83
1137 1141 0.678950 ACGGCAAATCTTGGGGTTTG 59.321 50.000 0.00 0.00 38.13 2.93
1138 1142 1.343142 GAACGGCAAATCTTGGGGTTT 59.657 47.619 0.00 0.00 0.00 3.27
1139 1143 0.966179 GAACGGCAAATCTTGGGGTT 59.034 50.000 0.00 0.00 0.00 4.11
1140 1144 0.112412 AGAACGGCAAATCTTGGGGT 59.888 50.000 0.00 0.00 0.00 4.95
1141 1145 0.527565 CAGAACGGCAAATCTTGGGG 59.472 55.000 0.00 0.00 0.00 4.96
1142 1146 0.527565 CCAGAACGGCAAATCTTGGG 59.472 55.000 0.00 0.00 0.00 4.12
1143 1147 0.527565 CCCAGAACGGCAAATCTTGG 59.472 55.000 0.00 0.00 0.00 3.61
1144 1148 1.200020 GTCCCAGAACGGCAAATCTTG 59.800 52.381 0.00 0.00 0.00 3.02
1145 1149 1.534729 GTCCCAGAACGGCAAATCTT 58.465 50.000 0.00 0.00 0.00 2.40
1146 1150 0.322546 GGTCCCAGAACGGCAAATCT 60.323 55.000 0.00 0.00 0.00 2.40
1147 1151 0.608035 TGGTCCCAGAACGGCAAATC 60.608 55.000 0.00 0.00 0.00 2.17
1148 1152 0.893727 GTGGTCCCAGAACGGCAAAT 60.894 55.000 0.00 0.00 0.00 2.32
1149 1153 1.527380 GTGGTCCCAGAACGGCAAA 60.527 57.895 0.00 0.00 0.00 3.68
1150 1154 2.063015 ATGTGGTCCCAGAACGGCAA 62.063 55.000 0.00 0.00 0.00 4.52
1151 1155 2.463589 GATGTGGTCCCAGAACGGCA 62.464 60.000 0.00 0.00 0.00 5.69
1200 1204 1.446272 GAAGAGCACGTTCTCCGGG 60.446 63.158 11.75 0.00 45.00 5.73
1281 1285 1.522092 CTGGGAGAACGGCATGCTA 59.478 57.895 18.92 0.00 0.00 3.49
1282 1286 2.270205 CTGGGAGAACGGCATGCT 59.730 61.111 18.92 0.00 0.00 3.79
1285 1289 4.473520 CGCCTGGGAGAACGGCAT 62.474 66.667 0.00 0.00 43.95 4.40
1361 1365 1.059913 CCTGTTCACCTCCTGGTTCT 58.940 55.000 0.00 0.00 46.05 3.01
1366 1370 1.340405 CCCATTCCTGTTCACCTCCTG 60.340 57.143 0.00 0.00 0.00 3.86
1367 1371 0.995024 CCCATTCCTGTTCACCTCCT 59.005 55.000 0.00 0.00 0.00 3.69
1382 1386 1.692749 AGGCCGTCCATGTACCCAT 60.693 57.895 0.00 0.00 33.74 4.00
1383 1387 2.285069 AGGCCGTCCATGTACCCA 60.285 61.111 0.00 0.00 33.74 4.51
1386 1390 0.249398 ACTTGAGGCCGTCCATGTAC 59.751 55.000 0.00 0.00 33.74 2.90
1537 1541 5.305128 TGCAGAAATTTTGATTTCTCTGGGT 59.695 36.000 10.53 0.00 45.94 4.51
1539 1543 6.365247 CACTGCAGAAATTTTGATTTCTCTGG 59.635 38.462 23.35 7.00 45.94 3.86
1608 1707 8.034215 TGCTTATGATAAACTGAAACATTTGGG 58.966 33.333 0.00 0.00 0.00 4.12
1658 1757 9.201127 CAAGTAATCTGATGAATATCGTGTGAT 57.799 33.333 0.00 0.00 36.04 3.06
1684 1838 6.203530 TCACTTGTGAAGTTGTGATCTGAATC 59.796 38.462 0.44 0.00 40.46 2.52
1725 1880 0.179148 CTGCGCTGTCGGTGTGTATA 60.179 55.000 9.73 0.00 35.95 1.47
1733 1888 2.472232 TACTGTCACTGCGCTGTCGG 62.472 60.000 17.75 14.23 35.95 4.79
1734 1889 0.456824 ATACTGTCACTGCGCTGTCG 60.457 55.000 17.75 12.80 39.07 4.35
1735 1890 1.656095 GAATACTGTCACTGCGCTGTC 59.344 52.381 17.75 8.03 0.00 3.51
1739 1896 1.002366 CAGGAATACTGTCACTGCGC 58.998 55.000 0.00 0.00 42.42 6.09
1753 1910 0.698238 CCATGGACTGGGTTCAGGAA 59.302 55.000 5.56 0.00 44.99 3.36
1961 2122 0.836400 AGGGAAACGAGGAAGAGGCA 60.836 55.000 0.00 0.00 0.00 4.75
1967 2128 0.981943 GGAAGGAGGGAAACGAGGAA 59.018 55.000 0.00 0.00 0.00 3.36
1985 2146 4.840005 GCGGCGAAGGAGAAGGGG 62.840 72.222 12.98 0.00 0.00 4.79
2135 2296 4.530857 CTCTACGCCCGCCCCTTG 62.531 72.222 0.00 0.00 0.00 3.61
2248 2417 0.525761 CAATTCCCAACCGTGCGATT 59.474 50.000 0.00 0.00 0.00 3.34
2293 2462 0.246360 CCCTTCGCCATTTTTCCCAC 59.754 55.000 0.00 0.00 0.00 4.61
2313 2482 3.808692 TATTGCCCCCATCGTTCCAGC 62.809 57.143 0.00 0.00 0.00 4.85
2390 2559 2.034812 GCTTCTCCCATCTACTACACCG 59.965 54.545 0.00 0.00 0.00 4.94
2391 2560 3.301274 AGCTTCTCCCATCTACTACACC 58.699 50.000 0.00 0.00 0.00 4.16
2393 2562 4.646945 CAGAAGCTTCTCCCATCTACTACA 59.353 45.833 26.18 0.00 34.74 2.74
2467 2656 9.233649 TCCTATAGTTTCCGAAATTGCTAAAAA 57.766 29.630 0.00 0.00 0.00 1.94
2468 2657 8.671028 GTCCTATAGTTTCCGAAATTGCTAAAA 58.329 33.333 0.00 0.00 0.00 1.52
2469 2658 7.010738 CGTCCTATAGTTTCCGAAATTGCTAAA 59.989 37.037 0.00 0.00 0.00 1.85
2470 2659 6.477688 CGTCCTATAGTTTCCGAAATTGCTAA 59.522 38.462 0.00 0.00 0.00 3.09
2471 2660 5.981315 CGTCCTATAGTTTCCGAAATTGCTA 59.019 40.000 0.00 0.00 0.00 3.49
2472 2661 4.809426 CGTCCTATAGTTTCCGAAATTGCT 59.191 41.667 0.00 0.00 0.00 3.91
2473 2662 4.569564 ACGTCCTATAGTTTCCGAAATTGC 59.430 41.667 0.00 0.00 0.00 3.56
2474 2663 7.760131 TTACGTCCTATAGTTTCCGAAATTG 57.240 36.000 0.00 0.00 0.00 2.32
2475 2664 7.042254 GCATTACGTCCTATAGTTTCCGAAATT 60.042 37.037 0.00 0.00 0.00 1.82
2476 2665 6.423001 GCATTACGTCCTATAGTTTCCGAAAT 59.577 38.462 0.00 0.00 0.00 2.17
2477 2666 5.750067 GCATTACGTCCTATAGTTTCCGAAA 59.250 40.000 0.00 0.00 0.00 3.46
2478 2667 5.163530 TGCATTACGTCCTATAGTTTCCGAA 60.164 40.000 0.00 0.00 0.00 4.30
2479 2668 4.338964 TGCATTACGTCCTATAGTTTCCGA 59.661 41.667 0.00 0.00 0.00 4.55
2480 2669 4.613944 TGCATTACGTCCTATAGTTTCCG 58.386 43.478 0.00 0.00 0.00 4.30
2481 2670 6.913873 TTTGCATTACGTCCTATAGTTTCC 57.086 37.500 0.00 0.00 0.00 3.13
2504 2693 4.209538 ACGGGCTACTAGTTTTGGTTTTT 58.790 39.130 0.00 0.00 0.00 1.94
2505 2694 3.817084 GACGGGCTACTAGTTTTGGTTTT 59.183 43.478 0.00 0.00 0.00 2.43
2506 2695 3.405831 GACGGGCTACTAGTTTTGGTTT 58.594 45.455 0.00 0.00 0.00 3.27
2507 2696 2.611224 CGACGGGCTACTAGTTTTGGTT 60.611 50.000 0.00 0.00 0.00 3.67
2508 2697 1.067354 CGACGGGCTACTAGTTTTGGT 60.067 52.381 0.00 0.00 0.00 3.67
2509 2698 1.636988 CGACGGGCTACTAGTTTTGG 58.363 55.000 0.00 0.00 0.00 3.28
2510 2699 1.636988 CCGACGGGCTACTAGTTTTG 58.363 55.000 5.81 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.