Multiple sequence alignment - TraesCS7A01G179000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G179000 chr7A 100.000 1672 0 0 1 1672 133628350 133630021 0.000000e+00 3088.0
1 TraesCS7A01G179000 chr7A 100.000 527 0 0 1884 2410 133630233 133630759 0.000000e+00 974.0
2 TraesCS7A01G179000 chr7A 89.831 59 4 1 361 419 66451084 66451028 9.240000e-10 75.0
3 TraesCS7A01G179000 chr2D 97.913 527 10 1 1884 2410 391298385 391297860 0.000000e+00 911.0
4 TraesCS7A01G179000 chr2D 77.727 220 40 7 494 704 512105240 512105459 2.520000e-25 126.0
5 TraesCS7A01G179000 chr2D 90.164 61 4 2 361 420 485995601 485995660 7.140000e-11 78.7
6 TraesCS7A01G179000 chr2D 76.023 171 26 9 469 635 466813001 466813160 9.240000e-10 75.0
7 TraesCS7A01G179000 chr2D 91.667 48 3 1 590 636 606195476 606195523 5.560000e-07 65.8
8 TraesCS7A01G179000 chr2D 91.667 48 3 1 590 636 616993325 616993278 5.560000e-07 65.8
9 TraesCS7A01G179000 chr5A 97.723 527 12 0 1884 2410 382769944 382770470 0.000000e+00 907.0
10 TraesCS7A01G179000 chr5A 95.745 47 2 0 640 686 83401423 83401377 2.570000e-10 76.8
11 TraesCS7A01G179000 chr5B 97.533 527 13 0 1884 2410 445188004 445187478 0.000000e+00 902.0
12 TraesCS7A01G179000 chr5B 97.533 527 13 0 1884 2410 474474966 474474440 0.000000e+00 902.0
13 TraesCS7A01G179000 chr5B 97.529 526 13 0 1885 2410 455266109 455265584 0.000000e+00 900.0
14 TraesCS7A01G179000 chr5B 97.343 527 14 0 1884 2410 645094668 645094142 0.000000e+00 896.0
15 TraesCS7A01G179000 chr5B 96.000 250 10 0 1423 1672 455266675 455266426 8.020000e-110 407.0
16 TraesCS7A01G179000 chr5B 95.600 250 11 0 1423 1672 455268640 455268391 3.730000e-108 401.0
17 TraesCS7A01G179000 chr5B 95.600 250 11 0 1423 1672 455270060 455269811 3.730000e-108 401.0
18 TraesCS7A01G179000 chr5B 95.600 250 11 0 1423 1672 455271480 455271231 3.730000e-108 401.0
19 TraesCS7A01G179000 chr5B 95.219 251 11 1 1423 1672 445188562 445188312 1.740000e-106 396.0
20 TraesCS7A01G179000 chr5B 95.219 251 11 1 1423 1672 474475596 474475346 1.740000e-106 396.0
21 TraesCS7A01G179000 chr5B 96.429 112 3 1 853 964 704168231 704168341 1.470000e-42 183.0
22 TraesCS7A01G179000 chr5B 91.803 61 4 1 640 699 128343520 128343460 1.540000e-12 84.2
23 TraesCS7A01G179000 chr3D 97.533 527 13 0 1884 2410 141463474 141462948 0.000000e+00 902.0
24 TraesCS7A01G179000 chr3D 100.000 32 0 0 337 368 608329643 608329674 2.590000e-05 60.2
25 TraesCS7A01G179000 chr3B 97.533 527 13 0 1884 2410 772715711 772716237 0.000000e+00 902.0
26 TraesCS7A01G179000 chr3B 97.200 250 7 0 1423 1672 772715359 772715608 7.960000e-115 424.0
27 TraesCS7A01G179000 chr3B 83.333 156 24 2 35 190 683837229 683837382 2.500000e-30 143.0
28 TraesCS7A01G179000 chr2A 97.343 527 14 0 1884 2410 444645591 444646117 0.000000e+00 896.0
29 TraesCS7A01G179000 chr2A 96.774 248 8 0 1423 1670 444645241 444645488 4.790000e-112 414.0
30 TraesCS7A01G179000 chr7D 81.886 668 78 25 16 675 134467807 134468439 7.630000e-145 523.0
31 TraesCS7A01G179000 chr7D 92.664 259 17 2 1165 1423 134481179 134481435 2.930000e-99 372.0
32 TraesCS7A01G179000 chr7D 89.423 208 16 4 963 1168 134468595 134468798 8.550000e-65 257.0
33 TraesCS7A01G179000 chr7D 92.453 159 11 1 702 859 134468438 134468596 2.410000e-55 226.0
34 TraesCS7A01G179000 chr7D 76.549 226 44 7 478 696 217448023 217447800 5.440000e-22 115.0
35 TraesCS7A01G179000 chr6B 96.414 251 8 1 1423 1672 706088075 706087825 1.720000e-111 412.0
36 TraesCS7A01G179000 chr6B 91.489 47 4 0 590 636 450802324 450802278 5.560000e-07 65.8
37 TraesCS7A01G179000 chr4B 97.345 113 2 1 857 968 529838251 529838363 8.790000e-45 191.0
38 TraesCS7A01G179000 chr4B 97.248 109 3 0 857 965 646113823 646113931 4.090000e-43 185.0
39 TraesCS7A01G179000 chr1D 96.460 113 4 0 857 969 45399303 45399191 1.140000e-43 187.0
40 TraesCS7A01G179000 chr1D 83.544 158 21 5 35 190 25950437 25950283 2.500000e-30 143.0
41 TraesCS7A01G179000 chr1D 83.478 115 16 1 591 705 408762170 408762059 1.180000e-18 104.0
42 TraesCS7A01G179000 chr1D 85.897 78 8 3 343 418 108724468 108724544 1.990000e-11 80.5
43 TraesCS7A01G179000 chr1D 95.745 47 2 0 590 636 214253742 214253696 2.570000e-10 76.8
44 TraesCS7A01G179000 chr1D 88.525 61 7 0 641 701 126213673 126213613 9.240000e-10 75.0
45 TraesCS7A01G179000 chr6A 97.248 109 3 0 857 965 27674110 27674002 4.090000e-43 185.0
46 TraesCS7A01G179000 chr6A 96.875 32 1 0 337 368 65552221 65552190 1.000000e-03 54.7
47 TraesCS7A01G179000 chr1B 97.248 109 3 0 857 965 395249022 395248914 4.090000e-43 185.0
48 TraesCS7A01G179000 chr1B 94.828 116 6 0 849 964 457004108 457003993 5.290000e-42 182.0
49 TraesCS7A01G179000 chr1B 84.932 146 21 1 35 180 101228199 101228343 1.930000e-31 147.0
50 TraesCS7A01G179000 chr3A 96.396 111 4 0 855 965 219185097 219185207 1.470000e-42 183.0
51 TraesCS7A01G179000 chr3A 84.354 147 20 3 44 190 213598554 213598411 8.980000e-30 141.0
52 TraesCS7A01G179000 chr3A 77.536 138 23 4 288 421 64068230 64068097 2.570000e-10 76.8
53 TraesCS7A01G179000 chr4D 90.769 130 8 3 836 964 160742387 160742261 1.150000e-38 171.0
54 TraesCS7A01G179000 chr7B 85.256 156 20 3 36 190 579832113 579831960 8.920000e-35 158.0
55 TraesCS7A01G179000 chr7B 88.889 54 2 3 362 414 84260420 84260370 2.000000e-06 63.9
56 TraesCS7A01G179000 chr2B 84.076 157 19 5 35 190 652820342 652820493 1.930000e-31 147.0
57 TraesCS7A01G179000 chrUn 84.138 145 22 1 36 180 41894140 41894283 3.230000e-29 139.0
58 TraesCS7A01G179000 chrUn 82.166 157 27 1 35 190 328078286 328078442 1.500000e-27 134.0
59 TraesCS7A01G179000 chr1A 85.526 76 11 0 343 418 59931367 59931442 1.990000e-11 80.5
60 TraesCS7A01G179000 chr1A 90.164 61 6 0 362 422 490318950 490318890 1.990000e-11 80.5
61 TraesCS7A01G179000 chr1A 87.719 57 5 1 363 419 90152960 90152906 5.560000e-07 65.8
62 TraesCS7A01G179000 chr6D 91.667 48 3 1 590 636 473291450 473291497 5.560000e-07 65.8
63 TraesCS7A01G179000 chr5D 91.489 47 3 1 640 686 89487120 89487075 2.000000e-06 63.9
64 TraesCS7A01G179000 chr5D 86.207 58 6 2 364 419 396794742 396794799 7.190000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G179000 chr7A 133628350 133630759 2409 False 2031.000000 3088 100.000000 1 2410 2 chr7A.!!$F1 2409
1 TraesCS7A01G179000 chr2D 391297860 391298385 525 True 911.000000 911 97.913000 1884 2410 1 chr2D.!!$R1 526
2 TraesCS7A01G179000 chr5A 382769944 382770470 526 False 907.000000 907 97.723000 1884 2410 1 chr5A.!!$F1 526
3 TraesCS7A01G179000 chr5B 645094142 645094668 526 True 896.000000 896 97.343000 1884 2410 1 chr5B.!!$R2 526
4 TraesCS7A01G179000 chr5B 445187478 445188562 1084 True 649.000000 902 96.376000 1423 2410 2 chr5B.!!$R3 987
5 TraesCS7A01G179000 chr5B 474474440 474475596 1156 True 649.000000 902 96.376000 1423 2410 2 chr5B.!!$R5 987
6 TraesCS7A01G179000 chr5B 455265584 455271480 5896 True 502.000000 900 96.065800 1423 2410 5 chr5B.!!$R4 987
7 TraesCS7A01G179000 chr3D 141462948 141463474 526 True 902.000000 902 97.533000 1884 2410 1 chr3D.!!$R1 526
8 TraesCS7A01G179000 chr3B 772715359 772716237 878 False 663.000000 902 97.366500 1423 2410 2 chr3B.!!$F2 987
9 TraesCS7A01G179000 chr2A 444645241 444646117 876 False 655.000000 896 97.058500 1423 2410 2 chr2A.!!$F1 987
10 TraesCS7A01G179000 chr7D 134467807 134468798 991 False 335.333333 523 87.920667 16 1168 3 chr7D.!!$F2 1152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 743 0.037697 TTGCACCGCGAGTCAGTATT 60.038 50.0 8.23 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 7295 0.179073 CGGCTGAAGTAGTGATGGGG 60.179 60.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 6.404712 TGCGTTCAAATTTTAAACCGTTTT 57.595 29.167 0.96 0.00 0.00 2.43
105 106 7.988904 AATTTTAAACCGTTTTCATCGTTGA 57.011 28.000 0.96 0.00 0.00 3.18
171 172 6.773976 AGGTTTTGATGAACTGTTCTTTCA 57.226 33.333 20.18 18.41 37.38 2.69
172 173 6.564328 AGGTTTTGATGAACTGTTCTTTCAC 58.436 36.000 20.18 11.33 35.82 3.18
173 174 5.455525 GGTTTTGATGAACTGTTCTTTCACG 59.544 40.000 20.18 0.00 35.82 4.35
174 175 6.255215 GTTTTGATGAACTGTTCTTTCACGA 58.745 36.000 20.18 11.52 35.82 4.35
175 176 6.429791 TTTGATGAACTGTTCTTTCACGAA 57.570 33.333 20.18 12.24 35.82 3.85
176 177 6.429791 TTGATGAACTGTTCTTTCACGAAA 57.570 33.333 20.18 6.97 35.82 3.46
203 204 9.849166 AAAAACAGACGAACATCTAAAAAGAAA 57.151 25.926 0.00 0.00 0.00 2.52
205 206 9.849166 AAACAGACGAACATCTAAAAAGAAAAA 57.151 25.926 0.00 0.00 0.00 1.94
206 207 9.503427 AACAGACGAACATCTAAAAAGAAAAAG 57.497 29.630 0.00 0.00 0.00 2.27
208 209 9.716507 CAGACGAACATCTAAAAAGAAAAAGAA 57.283 29.630 0.00 0.00 0.00 2.52
214 215 9.516314 AACATCTAAAAAGAAAAAGAAAGACCG 57.484 29.630 0.00 0.00 0.00 4.79
215 216 8.899771 ACATCTAAAAAGAAAAAGAAAGACCGA 58.100 29.630 0.00 0.00 0.00 4.69
216 217 9.170584 CATCTAAAAAGAAAAAGAAAGACCGAC 57.829 33.333 0.00 0.00 0.00 4.79
217 218 7.700505 TCTAAAAAGAAAAAGAAAGACCGACC 58.299 34.615 0.00 0.00 0.00 4.79
218 219 5.907866 AAAAGAAAAAGAAAGACCGACCA 57.092 34.783 0.00 0.00 0.00 4.02
219 220 6.465439 AAAAGAAAAAGAAAGACCGACCAT 57.535 33.333 0.00 0.00 0.00 3.55
220 221 5.438761 AAGAAAAAGAAAGACCGACCATG 57.561 39.130 0.00 0.00 0.00 3.66
221 222 3.253432 AGAAAAAGAAAGACCGACCATGC 59.747 43.478 0.00 0.00 0.00 4.06
222 223 1.534729 AAAGAAAGACCGACCATGCC 58.465 50.000 0.00 0.00 0.00 4.40
223 224 0.400213 AAGAAAGACCGACCATGCCA 59.600 50.000 0.00 0.00 0.00 4.92
258 259 7.780008 TTTCTAAAGTCATTTTCGAGACACA 57.220 32.000 5.46 0.00 37.23 3.72
264 265 1.289109 ATTTTCGAGACACACGGCCG 61.289 55.000 26.86 26.86 0.00 6.13
290 291 1.154225 CGCAGAACCAAATCCGTGC 60.154 57.895 0.00 0.00 0.00 5.34
295 296 1.073923 AGAACCAAATCCGTGCCTCTT 59.926 47.619 0.00 0.00 0.00 2.85
340 341 3.410631 TTTCCGTTTCTGATAGGCACA 57.589 42.857 0.00 0.00 0.00 4.57
341 342 3.410631 TTCCGTTTCTGATAGGCACAA 57.589 42.857 0.00 0.00 0.00 3.33
354 355 2.344535 GCACAACCATGCCTCTTGT 58.655 52.632 0.00 0.00 39.86 3.16
393 395 5.514274 TTTTTCTTGTTTTCGAGAGGCAT 57.486 34.783 0.00 0.00 40.91 4.40
395 397 3.401033 TCTTGTTTTCGAGAGGCATGA 57.599 42.857 0.00 0.00 35.59 3.07
399 401 0.320374 TTTTCGAGAGGCATGACCGT 59.680 50.000 0.00 0.00 46.52 4.83
401 403 2.835701 TTCGAGAGGCATGACCGTGC 62.836 60.000 0.00 5.68 46.52 5.34
407 409 2.887568 GCATGACCGTGCCTCTCG 60.888 66.667 0.00 0.00 39.18 4.04
408 410 2.887568 CATGACCGTGCCTCTCGC 60.888 66.667 0.00 0.00 38.31 5.03
409 411 3.071206 ATGACCGTGCCTCTCGCT 61.071 61.111 0.00 0.00 38.78 4.93
453 456 4.436368 TCCAAGAGGGACGACTCC 57.564 61.111 0.00 0.00 42.15 3.85
467 470 1.136336 CGACTCCCGCGAAAGAAAAAG 60.136 52.381 8.23 0.00 0.00 2.27
517 523 7.730364 TTAGTCCAAAAGCTAAGAAAGACTG 57.270 36.000 11.95 0.00 35.18 3.51
520 526 5.299531 GTCCAAAAGCTAAGAAAGACTGGTT 59.700 40.000 0.00 0.00 0.00 3.67
541 547 5.627172 GTTGAAAACCAAAAAGCCAGAAAC 58.373 37.500 0.00 0.00 42.21 2.78
543 549 4.934602 TGAAAACCAAAAAGCCAGAAACAG 59.065 37.500 0.00 0.00 0.00 3.16
580 586 1.007849 GCCAAAAACACGTGCCGAT 60.008 52.632 17.22 0.00 0.00 4.18
581 587 0.596341 GCCAAAAACACGTGCCGATT 60.596 50.000 17.22 2.92 0.00 3.34
582 588 1.846541 CCAAAAACACGTGCCGATTT 58.153 45.000 17.22 9.27 0.00 2.17
624 632 4.700365 CCAGAGCGCGACACGTGA 62.700 66.667 25.01 0.00 46.11 4.35
625 633 3.461982 CAGAGCGCGACACGTGAC 61.462 66.667 25.01 16.07 46.11 3.67
683 691 2.436824 GGAGGCTCCCGAACAAGC 60.437 66.667 23.49 0.00 37.80 4.01
684 692 2.815647 GAGGCTCCCGAACAAGCG 60.816 66.667 2.15 0.00 39.47 4.68
685 693 3.591254 GAGGCTCCCGAACAAGCGT 62.591 63.158 2.15 0.00 39.47 5.07
686 694 2.668550 GGCTCCCGAACAAGCGTT 60.669 61.111 0.00 0.00 39.47 4.84
687 695 2.677979 GGCTCCCGAACAAGCGTTC 61.678 63.158 0.00 0.00 46.77 3.95
699 707 6.617289 GAACAAGCGTTCCTCAATTAATTG 57.383 37.500 20.13 20.13 44.92 2.32
700 708 4.485163 ACAAGCGTTCCTCAATTAATTGC 58.515 39.130 21.15 9.36 37.68 3.56
701 709 3.782889 AGCGTTCCTCAATTAATTGCC 57.217 42.857 21.15 7.24 37.68 4.52
702 710 2.427095 AGCGTTCCTCAATTAATTGCCC 59.573 45.455 21.15 7.53 37.68 5.36
703 711 2.427095 GCGTTCCTCAATTAATTGCCCT 59.573 45.455 21.15 0.00 37.68 5.19
704 712 3.489229 GCGTTCCTCAATTAATTGCCCTC 60.489 47.826 21.15 10.37 37.68 4.30
705 713 3.947834 CGTTCCTCAATTAATTGCCCTCT 59.052 43.478 21.15 0.00 37.68 3.69
706 714 5.123227 CGTTCCTCAATTAATTGCCCTCTA 58.877 41.667 21.15 4.38 37.68 2.43
735 743 0.037697 TTGCACCGCGAGTCAGTATT 60.038 50.000 8.23 0.00 0.00 1.89
743 751 3.499048 CGCGAGTCAGTATTGTTGTACT 58.501 45.455 0.00 0.00 35.34 2.73
808 817 7.114388 GTCATGTTTTCAAAAATTAGGACGGAC 59.886 37.037 0.00 0.00 0.00 4.79
831 840 1.869774 ACCGGTCCGTGTTACTTTTC 58.130 50.000 11.06 0.00 0.00 2.29
846 855 6.151480 TGTTACTTTTCCGTTTTTCCTGAACT 59.849 34.615 0.00 0.00 0.00 3.01
859 868 7.812690 TTTTCCTGAACTCCTAAAAACCTAC 57.187 36.000 0.00 0.00 0.00 3.18
860 869 6.758806 TTCCTGAACTCCTAAAAACCTACT 57.241 37.500 0.00 0.00 0.00 2.57
861 870 6.356186 TCCTGAACTCCTAAAAACCTACTC 57.644 41.667 0.00 0.00 0.00 2.59
862 871 5.247792 TCCTGAACTCCTAAAAACCTACTCC 59.752 44.000 0.00 0.00 0.00 3.85
863 872 5.489249 CTGAACTCCTAAAAACCTACTCCC 58.511 45.833 0.00 0.00 0.00 4.30
864 873 5.160386 TGAACTCCTAAAAACCTACTCCCT 58.840 41.667 0.00 0.00 0.00 4.20
865 874 5.247792 TGAACTCCTAAAAACCTACTCCCTC 59.752 44.000 0.00 0.00 0.00 4.30
866 875 4.102598 ACTCCTAAAAACCTACTCCCTCC 58.897 47.826 0.00 0.00 0.00 4.30
867 876 3.102204 TCCTAAAAACCTACTCCCTCCG 58.898 50.000 0.00 0.00 0.00 4.63
868 877 2.836372 CCTAAAAACCTACTCCCTCCGT 59.164 50.000 0.00 0.00 0.00 4.69
869 878 3.262660 CCTAAAAACCTACTCCCTCCGTT 59.737 47.826 0.00 0.00 0.00 4.44
870 879 3.413846 AAAAACCTACTCCCTCCGTTC 57.586 47.619 0.00 0.00 0.00 3.95
871 880 2.019807 AAACCTACTCCCTCCGTTCA 57.980 50.000 0.00 0.00 0.00 3.18
872 881 1.558233 AACCTACTCCCTCCGTTCAG 58.442 55.000 0.00 0.00 0.00 3.02
873 882 0.702902 ACCTACTCCCTCCGTTCAGA 59.297 55.000 0.00 0.00 0.00 3.27
874 883 1.076677 ACCTACTCCCTCCGTTCAGAA 59.923 52.381 0.00 0.00 0.00 3.02
875 884 2.292323 ACCTACTCCCTCCGTTCAGAAT 60.292 50.000 0.00 0.00 0.00 2.40
876 885 2.766828 CCTACTCCCTCCGTTCAGAATT 59.233 50.000 0.00 0.00 0.00 2.17
877 886 3.958798 CCTACTCCCTCCGTTCAGAATTA 59.041 47.826 0.00 0.00 0.00 1.40
878 887 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
879 888 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
880 889 3.838903 ACTCCCTCCGTTCAGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
881 890 4.184629 CTCCCTCCGTTCAGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
882 891 3.581332 TCCCTCCGTTCAGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
883 892 3.933332 CCCTCCGTTCAGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
884 893 3.612860 CCTCCGTTCAGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
885 894 2.991190 TCCGTTCAGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
886 895 2.222508 CCGTTCAGAATTACTTGTCGCG 60.223 50.000 0.00 0.00 0.00 5.87
887 896 2.659757 CGTTCAGAATTACTTGTCGCGA 59.340 45.455 3.71 3.71 0.00 5.87
888 897 3.120616 CGTTCAGAATTACTTGTCGCGAA 59.879 43.478 12.06 0.00 0.00 4.70
889 898 4.375606 CGTTCAGAATTACTTGTCGCGAAA 60.376 41.667 12.06 0.54 0.00 3.46
890 899 5.437263 GTTCAGAATTACTTGTCGCGAAAA 58.563 37.500 12.06 12.01 0.00 2.29
891 900 5.856126 TCAGAATTACTTGTCGCGAAAAT 57.144 34.783 13.05 5.74 0.00 1.82
892 901 5.617609 TCAGAATTACTTGTCGCGAAAATG 58.382 37.500 13.05 9.32 0.00 2.32
893 902 4.788100 CAGAATTACTTGTCGCGAAAATGG 59.212 41.667 13.05 4.35 0.00 3.16
894 903 4.693566 AGAATTACTTGTCGCGAAAATGGA 59.306 37.500 13.05 0.56 0.00 3.41
895 904 5.354234 AGAATTACTTGTCGCGAAAATGGAT 59.646 36.000 13.05 3.91 0.00 3.41
896 905 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
897 906 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
898 907 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
899 908 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
900 909 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
901 910 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
902 911 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
903 912 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
904 913 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
905 914 5.864474 GTCGCGAAAATGGATGTATCTAGAT 59.136 40.000 12.06 10.73 0.00 1.98
906 915 5.863935 TCGCGAAAATGGATGTATCTAGATG 59.136 40.000 15.79 0.00 0.00 2.90
907 916 5.635280 CGCGAAAATGGATGTATCTAGATGT 59.365 40.000 15.79 1.25 0.00 3.06
908 917 6.806739 CGCGAAAATGGATGTATCTAGATGTA 59.193 38.462 15.79 4.44 0.00 2.29
909 918 7.489435 CGCGAAAATGGATGTATCTAGATGTAT 59.511 37.037 15.79 9.11 0.00 2.29
910 919 9.155975 GCGAAAATGGATGTATCTAGATGTATT 57.844 33.333 15.79 4.32 0.00 1.89
935 944 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
936 945 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
937 946 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
938 947 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
939 948 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
940 949 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
941 950 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
942 951 5.989477 AGATACATCCATTTCCGAGACAAA 58.011 37.500 0.00 0.00 0.00 2.83
943 952 6.595682 AGATACATCCATTTCCGAGACAAAT 58.404 36.000 0.00 0.00 0.00 2.32
944 953 7.735917 AGATACATCCATTTCCGAGACAAATA 58.264 34.615 0.00 0.00 0.00 1.40
945 954 8.210946 AGATACATCCATTTCCGAGACAAATAA 58.789 33.333 0.00 0.00 0.00 1.40
946 955 8.924511 ATACATCCATTTCCGAGACAAATAAT 57.075 30.769 0.00 0.00 0.00 1.28
947 956 7.645058 ACATCCATTTCCGAGACAAATAATT 57.355 32.000 0.00 0.00 0.00 1.40
948 957 8.066612 ACATCCATTTCCGAGACAAATAATTT 57.933 30.769 0.00 0.00 0.00 1.82
949 958 8.190784 ACATCCATTTCCGAGACAAATAATTTC 58.809 33.333 0.00 0.00 0.00 2.17
950 959 6.781138 TCCATTTCCGAGACAAATAATTTCG 58.219 36.000 0.00 0.00 0.00 3.46
951 960 6.596106 TCCATTTCCGAGACAAATAATTTCGA 59.404 34.615 0.00 0.00 33.38 3.71
952 961 7.119992 TCCATTTCCGAGACAAATAATTTCGAA 59.880 33.333 0.00 0.00 33.38 3.71
953 962 7.218204 CCATTTCCGAGACAAATAATTTCGAAC 59.782 37.037 0.00 0.00 33.38 3.95
954 963 5.444586 TCCGAGACAAATAATTTCGAACG 57.555 39.130 0.00 0.00 33.38 3.95
955 964 4.327898 TCCGAGACAAATAATTTCGAACGG 59.672 41.667 0.00 3.03 37.37 4.44
956 965 4.327898 CCGAGACAAATAATTTCGAACGGA 59.672 41.667 9.10 0.00 38.09 4.69
957 966 5.481472 CGAGACAAATAATTTCGAACGGAG 58.519 41.667 0.00 0.00 33.38 4.63
958 967 5.500290 CGAGACAAATAATTTCGAACGGAGG 60.500 44.000 0.00 0.00 33.38 4.30
959 968 4.634443 AGACAAATAATTTCGAACGGAGGG 59.366 41.667 0.00 0.00 0.00 4.30
960 969 4.581868 ACAAATAATTTCGAACGGAGGGA 58.418 39.130 0.00 0.00 0.00 4.20
961 970 4.634443 ACAAATAATTTCGAACGGAGGGAG 59.366 41.667 0.00 0.00 0.00 4.30
962 971 4.482952 AATAATTTCGAACGGAGGGAGT 57.517 40.909 0.00 0.00 0.00 3.85
963 972 5.603170 AATAATTTCGAACGGAGGGAGTA 57.397 39.130 0.00 0.00 0.00 2.59
964 973 5.803237 ATAATTTCGAACGGAGGGAGTAT 57.197 39.130 0.00 0.00 0.00 2.12
965 974 4.482952 AATTTCGAACGGAGGGAGTATT 57.517 40.909 0.00 0.00 0.00 1.89
1001 1010 3.381983 TGGACTGGCGACGCTCAT 61.382 61.111 20.77 4.80 0.00 2.90
1008 1017 1.106944 TGGCGACGCTCATGGATCTA 61.107 55.000 20.77 0.00 0.00 1.98
1017 1027 1.273606 CTCATGGATCTAATCGGCGGT 59.726 52.381 7.21 0.00 0.00 5.68
1060 1070 0.888736 TGGCAACATCAACCGGACAG 60.889 55.000 9.46 0.00 46.17 3.51
1070 1080 1.057851 AACCGGACAGGAGGGACAAA 61.058 55.000 9.46 0.00 45.00 2.83
1079 1089 1.979155 GAGGGACAAAGGCAAGGGC 60.979 63.158 0.00 0.00 40.13 5.19
1129 1140 1.378882 GCAAATGGATGAGGCGCTCA 61.379 55.000 7.64 9.80 44.99 4.26
1168 1179 1.986882 AGAGAAGGCAACCTTGTTGG 58.013 50.000 3.02 0.00 44.82 3.77
1183 1194 1.156736 GTTGGTGATCAACGACCTGG 58.843 55.000 19.07 0.00 45.10 4.45
1184 1195 1.052617 TTGGTGATCAACGACCTGGA 58.947 50.000 6.21 0.00 32.98 3.86
1185 1196 1.052617 TGGTGATCAACGACCTGGAA 58.947 50.000 6.21 0.00 32.98 3.53
1186 1197 1.001974 TGGTGATCAACGACCTGGAAG 59.998 52.381 6.21 0.00 32.98 3.46
1187 1198 1.275291 GGTGATCAACGACCTGGAAGA 59.725 52.381 0.00 0.00 34.07 2.87
1188 1199 2.611518 GTGATCAACGACCTGGAAGAG 58.388 52.381 0.00 0.00 34.07 2.85
1190 1201 1.825474 GATCAACGACCTGGAAGAGGA 59.175 52.381 0.00 0.00 46.33 3.71
1191 1202 1.712056 TCAACGACCTGGAAGAGGAA 58.288 50.000 0.00 0.00 46.33 3.36
1192 1203 1.618837 TCAACGACCTGGAAGAGGAAG 59.381 52.381 0.00 0.00 46.33 3.46
1193 1204 0.977395 AACGACCTGGAAGAGGAAGG 59.023 55.000 0.00 0.00 46.33 3.46
1194 1205 0.178929 ACGACCTGGAAGAGGAAGGT 60.179 55.000 0.00 0.00 46.33 3.50
1195 1206 0.247736 CGACCTGGAAGAGGAAGGTG 59.752 60.000 0.00 0.00 46.33 4.00
1196 1207 1.645710 GACCTGGAAGAGGAAGGTGA 58.354 55.000 0.00 0.00 46.33 4.02
1197 1208 2.192263 GACCTGGAAGAGGAAGGTGAT 58.808 52.381 0.00 0.00 46.33 3.06
1198 1209 2.573915 GACCTGGAAGAGGAAGGTGATT 59.426 50.000 0.00 0.00 46.33 2.57
1199 1210 2.989571 ACCTGGAAGAGGAAGGTGATTT 59.010 45.455 0.00 0.00 46.33 2.17
1200 1211 3.245052 ACCTGGAAGAGGAAGGTGATTTG 60.245 47.826 0.00 0.00 46.33 2.32
1201 1212 3.009473 CCTGGAAGAGGAAGGTGATTTGA 59.991 47.826 0.00 0.00 46.33 2.69
1202 1213 4.507335 CCTGGAAGAGGAAGGTGATTTGAA 60.507 45.833 0.00 0.00 46.33 2.69
1203 1214 4.655963 TGGAAGAGGAAGGTGATTTGAAG 58.344 43.478 0.00 0.00 0.00 3.02
1204 1215 4.104738 TGGAAGAGGAAGGTGATTTGAAGT 59.895 41.667 0.00 0.00 0.00 3.01
1205 1216 4.457257 GGAAGAGGAAGGTGATTTGAAGTG 59.543 45.833 0.00 0.00 0.00 3.16
1206 1217 4.026356 AGAGGAAGGTGATTTGAAGTGG 57.974 45.455 0.00 0.00 0.00 4.00
1207 1218 3.395941 AGAGGAAGGTGATTTGAAGTGGT 59.604 43.478 0.00 0.00 0.00 4.16
1208 1219 4.141158 AGAGGAAGGTGATTTGAAGTGGTT 60.141 41.667 0.00 0.00 0.00 3.67
1209 1220 3.891366 AGGAAGGTGATTTGAAGTGGTTG 59.109 43.478 0.00 0.00 0.00 3.77
1210 1221 3.552890 GGAAGGTGATTTGAAGTGGTTGC 60.553 47.826 0.00 0.00 0.00 4.17
1211 1222 2.949447 AGGTGATTTGAAGTGGTTGCT 58.051 42.857 0.00 0.00 0.00 3.91
1212 1223 2.624838 AGGTGATTTGAAGTGGTTGCTG 59.375 45.455 0.00 0.00 0.00 4.41
1213 1224 2.288395 GGTGATTTGAAGTGGTTGCTGG 60.288 50.000 0.00 0.00 0.00 4.85
1214 1225 1.340889 TGATTTGAAGTGGTTGCTGGC 59.659 47.619 0.00 0.00 0.00 4.85
1215 1226 1.340889 GATTTGAAGTGGTTGCTGGCA 59.659 47.619 0.00 0.00 0.00 4.92
1216 1227 0.746063 TTTGAAGTGGTTGCTGGCAG 59.254 50.000 10.94 10.94 0.00 4.85
1217 1228 0.395586 TTGAAGTGGTTGCTGGCAGT 60.396 50.000 17.16 0.00 0.00 4.40
1218 1229 0.395586 TGAAGTGGTTGCTGGCAGTT 60.396 50.000 17.16 0.00 0.00 3.16
1219 1230 1.133945 TGAAGTGGTTGCTGGCAGTTA 60.134 47.619 17.16 2.72 0.00 2.24
1220 1231 1.953686 GAAGTGGTTGCTGGCAGTTAA 59.046 47.619 17.16 9.19 0.00 2.01
1221 1232 2.065899 AGTGGTTGCTGGCAGTTAAA 57.934 45.000 17.16 5.86 0.00 1.52
1222 1233 1.956477 AGTGGTTGCTGGCAGTTAAAG 59.044 47.619 17.16 0.00 0.00 1.85
1223 1234 1.681264 GTGGTTGCTGGCAGTTAAAGT 59.319 47.619 17.16 0.00 0.00 2.66
1224 1235 2.100749 GTGGTTGCTGGCAGTTAAAGTT 59.899 45.455 17.16 0.00 0.00 2.66
1225 1236 2.763448 TGGTTGCTGGCAGTTAAAGTTT 59.237 40.909 17.16 0.00 0.00 2.66
1226 1237 3.196685 TGGTTGCTGGCAGTTAAAGTTTT 59.803 39.130 17.16 0.00 0.00 2.43
1227 1238 3.555547 GGTTGCTGGCAGTTAAAGTTTTG 59.444 43.478 17.16 0.00 0.00 2.44
1228 1239 2.820330 TGCTGGCAGTTAAAGTTTTGC 58.180 42.857 17.16 2.70 35.87 3.68
1229 1240 2.167281 TGCTGGCAGTTAAAGTTTTGCA 59.833 40.909 17.16 0.52 38.27 4.08
1230 1241 2.539688 GCTGGCAGTTAAAGTTTTGCAC 59.460 45.455 17.16 3.70 38.27 4.57
1231 1242 3.123050 CTGGCAGTTAAAGTTTTGCACC 58.877 45.455 6.28 1.50 38.27 5.01
1232 1243 2.124122 GGCAGTTAAAGTTTTGCACCG 58.876 47.619 11.74 0.00 38.27 4.94
1233 1244 1.521006 GCAGTTAAAGTTTTGCACCGC 59.479 47.619 5.99 0.00 36.59 5.68
1234 1245 2.803451 CAGTTAAAGTTTTGCACCGCA 58.197 42.857 0.00 0.00 36.47 5.69
1235 1246 2.533942 CAGTTAAAGTTTTGCACCGCAC 59.466 45.455 0.00 0.00 38.71 5.34
1236 1247 1.515221 GTTAAAGTTTTGCACCGCACG 59.485 47.619 0.00 0.00 38.71 5.34
1237 1248 0.733729 TAAAGTTTTGCACCGCACGT 59.266 45.000 0.00 0.00 38.71 4.49
1238 1249 0.109039 AAAGTTTTGCACCGCACGTT 60.109 45.000 0.00 0.00 38.71 3.99
1239 1250 0.733729 AAGTTTTGCACCGCACGTTA 59.266 45.000 0.00 0.00 38.71 3.18
1240 1251 0.028374 AGTTTTGCACCGCACGTTAC 59.972 50.000 0.00 0.00 38.71 2.50
1241 1252 0.028374 GTTTTGCACCGCACGTTACT 59.972 50.000 0.00 0.00 38.71 2.24
1242 1253 0.305313 TTTTGCACCGCACGTTACTC 59.695 50.000 0.00 0.00 38.71 2.59
1243 1254 1.500512 TTTGCACCGCACGTTACTCC 61.501 55.000 0.00 0.00 38.71 3.85
1244 1255 2.356553 GCACCGCACGTTACTCCA 60.357 61.111 0.00 0.00 0.00 3.86
1245 1256 2.664436 GCACCGCACGTTACTCCAC 61.664 63.158 0.00 0.00 0.00 4.02
1246 1257 2.049802 ACCGCACGTTACTCCACG 60.050 61.111 0.00 0.00 46.04 4.94
1253 1264 3.396491 CGTTACTCCACGTCCAGAC 57.604 57.895 0.00 0.00 35.34 3.51
1273 1284 3.220350 CGATCTTCATCGTTTTACGCC 57.780 47.619 0.00 0.00 45.90 5.68
1274 1285 2.858344 CGATCTTCATCGTTTTACGCCT 59.142 45.455 0.00 0.00 45.90 5.52
1275 1286 3.301835 CGATCTTCATCGTTTTACGCCTG 60.302 47.826 0.00 0.00 45.90 4.85
1276 1287 2.343101 TCTTCATCGTTTTACGCCTGG 58.657 47.619 0.00 0.00 42.21 4.45
1277 1288 0.800012 TTCATCGTTTTACGCCTGGC 59.200 50.000 9.11 9.11 42.21 4.85
1278 1289 1.022451 TCATCGTTTTACGCCTGGCC 61.022 55.000 14.12 0.00 42.21 5.36
1279 1290 1.024579 CATCGTTTTACGCCTGGCCT 61.025 55.000 14.12 3.97 42.21 5.19
1280 1291 0.538118 ATCGTTTTACGCCTGGCCTA 59.462 50.000 14.12 2.81 42.21 3.93
1281 1292 0.108520 TCGTTTTACGCCTGGCCTAG 60.109 55.000 14.12 1.27 42.21 3.02
1290 1301 3.820425 CTGGCCTAGGACAACCCA 58.180 61.111 20.52 11.78 37.41 4.51
1291 1302 2.074967 CTGGCCTAGGACAACCCAA 58.925 57.895 20.52 0.00 37.41 4.12
1292 1303 0.035056 CTGGCCTAGGACAACCCAAG 60.035 60.000 20.52 1.09 37.41 3.61
1293 1304 1.303282 GGCCTAGGACAACCCAAGG 59.697 63.158 14.75 0.00 40.67 3.61
1294 1305 1.303282 GCCTAGGACAACCCAAGGG 59.697 63.158 14.75 2.91 39.12 3.95
1304 1315 2.830370 CCCAAGGGGCTCGATTGC 60.830 66.667 0.00 0.00 35.35 3.56
1305 1316 2.273449 CCAAGGGGCTCGATTGCT 59.727 61.111 0.00 0.00 0.00 3.91
1306 1317 1.821332 CCAAGGGGCTCGATTGCTC 60.821 63.158 0.00 0.00 0.00 4.26
1307 1318 2.176273 CAAGGGGCTCGATTGCTCG 61.176 63.158 0.00 0.00 46.41 5.03
1308 1319 3.391665 AAGGGGCTCGATTGCTCGG 62.392 63.158 0.00 0.00 45.10 4.63
1309 1320 4.162690 GGGGCTCGATTGCTCGGT 62.163 66.667 0.00 0.00 45.10 4.69
1310 1321 2.125106 GGGCTCGATTGCTCGGTT 60.125 61.111 0.00 0.00 45.10 4.44
1311 1322 2.464459 GGGCTCGATTGCTCGGTTG 61.464 63.158 0.00 0.00 45.10 3.77
1312 1323 2.401195 GCTCGATTGCTCGGTTGC 59.599 61.111 0.00 0.00 45.10 4.17
1313 1324 2.103042 GCTCGATTGCTCGGTTGCT 61.103 57.895 0.00 0.00 45.10 3.91
1314 1325 0.806102 GCTCGATTGCTCGGTTGCTA 60.806 55.000 0.00 0.00 45.10 3.49
1315 1326 1.203928 CTCGATTGCTCGGTTGCTAG 58.796 55.000 0.00 0.00 45.10 3.42
1316 1327 0.815095 TCGATTGCTCGGTTGCTAGA 59.185 50.000 0.00 0.00 45.10 2.43
1317 1328 1.203758 TCGATTGCTCGGTTGCTAGAA 59.796 47.619 0.00 0.00 45.10 2.10
1318 1329 1.999735 CGATTGCTCGGTTGCTAGAAA 59.000 47.619 0.00 0.00 41.27 2.52
1319 1330 2.415168 CGATTGCTCGGTTGCTAGAAAA 59.585 45.455 0.00 0.00 41.27 2.29
1320 1331 3.120338 CGATTGCTCGGTTGCTAGAAAAA 60.120 43.478 0.00 0.00 41.27 1.94
1341 1352 4.989279 AAACACATGTTTGCTGAAGAGT 57.011 36.364 9.16 0.00 45.55 3.24
1342 1353 4.989279 AACACATGTTTGCTGAAGAGTT 57.011 36.364 0.00 0.00 33.93 3.01
1343 1354 4.558538 ACACATGTTTGCTGAAGAGTTC 57.441 40.909 0.00 0.00 0.00 3.01
1344 1355 3.002656 ACACATGTTTGCTGAAGAGTTCG 59.997 43.478 0.00 0.00 0.00 3.95
1345 1356 3.248363 CACATGTTTGCTGAAGAGTTCGA 59.752 43.478 0.00 0.00 0.00 3.71
1346 1357 3.876914 ACATGTTTGCTGAAGAGTTCGAA 59.123 39.130 0.00 0.00 0.00 3.71
1347 1358 4.335315 ACATGTTTGCTGAAGAGTTCGAAA 59.665 37.500 0.00 0.00 0.00 3.46
1348 1359 4.273005 TGTTTGCTGAAGAGTTCGAAAC 57.727 40.909 0.00 0.00 0.00 2.78
1349 1360 3.064820 TGTTTGCTGAAGAGTTCGAAACC 59.935 43.478 0.00 0.00 0.00 3.27
1350 1361 2.613026 TGCTGAAGAGTTCGAAACCA 57.387 45.000 0.00 0.00 0.00 3.67
1351 1362 2.912771 TGCTGAAGAGTTCGAAACCAA 58.087 42.857 0.00 0.00 0.00 3.67
1352 1363 2.872245 TGCTGAAGAGTTCGAAACCAAG 59.128 45.455 0.00 0.00 0.00 3.61
1353 1364 2.349912 GCTGAAGAGTTCGAAACCAAGC 60.350 50.000 0.00 1.19 0.00 4.01
1354 1365 1.864711 TGAAGAGTTCGAAACCAAGCG 59.135 47.619 0.00 0.00 0.00 4.68
1355 1366 1.194772 GAAGAGTTCGAAACCAAGCGG 59.805 52.381 0.00 0.00 38.77 5.52
1356 1367 0.602905 AGAGTTCGAAACCAAGCGGG 60.603 55.000 0.00 0.00 44.81 6.13
1365 1376 2.264480 CCAAGCGGGTCGTGATCA 59.736 61.111 0.00 0.00 0.00 2.92
1366 1377 1.153369 CCAAGCGGGTCGTGATCAT 60.153 57.895 0.00 0.00 0.00 2.45
1367 1378 1.431488 CCAAGCGGGTCGTGATCATG 61.431 60.000 8.74 8.74 0.00 3.07
1368 1379 0.740868 CAAGCGGGTCGTGATCATGT 60.741 55.000 14.52 0.00 0.00 3.21
1369 1380 0.036388 AAGCGGGTCGTGATCATGTT 60.036 50.000 14.52 0.00 0.00 2.71
1370 1381 0.036388 AGCGGGTCGTGATCATGTTT 60.036 50.000 14.52 0.00 0.00 2.83
1371 1382 0.096976 GCGGGTCGTGATCATGTTTG 59.903 55.000 14.52 5.12 0.00 2.93
1372 1383 0.726827 CGGGTCGTGATCATGTTTGG 59.273 55.000 14.52 0.44 0.00 3.28
1373 1384 1.094785 GGGTCGTGATCATGTTTGGG 58.905 55.000 14.52 0.00 0.00 4.12
1374 1385 1.339631 GGGTCGTGATCATGTTTGGGA 60.340 52.381 14.52 0.00 0.00 4.37
1375 1386 2.009774 GGTCGTGATCATGTTTGGGAG 58.990 52.381 14.52 0.00 0.00 4.30
1376 1387 2.354704 GGTCGTGATCATGTTTGGGAGA 60.355 50.000 14.52 0.00 0.00 3.71
1377 1388 2.932614 GTCGTGATCATGTTTGGGAGAG 59.067 50.000 14.52 0.00 0.00 3.20
1378 1389 1.667724 CGTGATCATGTTTGGGAGAGC 59.332 52.381 6.77 0.00 0.00 4.09
1379 1390 2.679059 CGTGATCATGTTTGGGAGAGCT 60.679 50.000 6.77 0.00 0.00 4.09
1380 1391 3.350833 GTGATCATGTTTGGGAGAGCTT 58.649 45.455 0.00 0.00 0.00 3.74
1381 1392 3.128242 GTGATCATGTTTGGGAGAGCTTG 59.872 47.826 0.00 0.00 0.00 4.01
1382 1393 1.538047 TCATGTTTGGGAGAGCTTGC 58.462 50.000 0.00 0.00 0.00 4.01
1383 1394 0.529378 CATGTTTGGGAGAGCTTGCC 59.471 55.000 0.00 0.00 37.90 4.52
1384 1395 0.112995 ATGTTTGGGAGAGCTTGCCA 59.887 50.000 7.93 6.59 46.81 4.92
1387 1398 2.679092 TGGGAGAGCTTGCCATGG 59.321 61.111 7.63 7.63 43.15 3.66
1388 1399 2.832201 GGGAGAGCTTGCCATGGC 60.832 66.667 30.54 30.54 37.22 4.40
1402 1413 3.905784 GCCATGGCATATTAGCAAGAAC 58.094 45.455 32.08 0.00 41.49 3.01
1403 1414 3.318839 GCCATGGCATATTAGCAAGAACA 59.681 43.478 32.08 0.00 41.49 3.18
1404 1415 4.794003 GCCATGGCATATTAGCAAGAACAC 60.794 45.833 32.08 0.00 41.49 3.32
1405 1416 4.581824 CCATGGCATATTAGCAAGAACACT 59.418 41.667 0.00 0.00 35.83 3.55
1406 1417 5.506815 CCATGGCATATTAGCAAGAACACTG 60.507 44.000 0.00 0.00 35.83 3.66
1407 1418 4.588899 TGGCATATTAGCAAGAACACTGT 58.411 39.130 0.00 0.00 35.83 3.55
1408 1419 4.395854 TGGCATATTAGCAAGAACACTGTG 59.604 41.667 6.19 6.19 35.83 3.66
1409 1420 4.635765 GGCATATTAGCAAGAACACTGTGA 59.364 41.667 15.86 0.00 35.83 3.58
1410 1421 5.297776 GGCATATTAGCAAGAACACTGTGAT 59.702 40.000 15.86 1.59 35.83 3.06
1411 1422 6.425504 GCATATTAGCAAGAACACTGTGATC 58.574 40.000 15.86 12.54 0.00 2.92
1412 1423 6.259608 GCATATTAGCAAGAACACTGTGATCT 59.740 38.462 15.86 14.83 30.32 2.75
1413 1424 7.201679 GCATATTAGCAAGAACACTGTGATCTT 60.202 37.037 22.74 22.74 39.61 2.40
1414 1425 9.317936 CATATTAGCAAGAACACTGTGATCTTA 57.682 33.333 26.24 15.28 37.39 2.10
1415 1426 7.840342 ATTAGCAAGAACACTGTGATCTTAG 57.160 36.000 26.24 21.23 37.39 2.18
1416 1427 5.474578 AGCAAGAACACTGTGATCTTAGA 57.525 39.130 26.24 0.00 37.39 2.10
1417 1428 5.477510 AGCAAGAACACTGTGATCTTAGAG 58.522 41.667 26.24 17.86 37.39 2.43
1418 1429 4.629200 GCAAGAACACTGTGATCTTAGAGG 59.371 45.833 26.24 17.58 37.39 3.69
1419 1430 5.567623 GCAAGAACACTGTGATCTTAGAGGA 60.568 44.000 26.24 0.00 37.39 3.71
1420 1431 6.459066 CAAGAACACTGTGATCTTAGAGGAA 58.541 40.000 26.24 0.00 37.39 3.36
1421 1432 6.865834 AGAACACTGTGATCTTAGAGGAAT 57.134 37.500 15.86 0.00 0.00 3.01
1442 1453 1.533625 AGTAGTACACCCGTGCGTTA 58.466 50.000 2.52 0.00 32.20 3.18
1474 1614 9.450807 GACTACAATGCATACAAATAAATCACC 57.549 33.333 0.00 0.00 0.00 4.02
1493 1633 6.823286 TCACCCAAATAGTCATATCCAAGA 57.177 37.500 0.00 0.00 0.00 3.02
1495 1635 7.453393 TCACCCAAATAGTCATATCCAAGATC 58.547 38.462 0.00 0.00 0.00 2.75
1573 3004 3.393426 TTAACCGTCTGGATAGTCCCT 57.607 47.619 0.00 0.00 39.21 4.20
1919 6839 2.178912 TTCTTGTCGGACATTCCACC 57.821 50.000 12.26 0.00 35.91 4.61
2247 7167 4.805192 CACTAAACAACATTTGCAGCAAGT 59.195 37.500 8.12 1.94 0.00 3.16
2374 7294 7.070074 TGCCTTCAGAACCTAAAAATGGTTTAA 59.930 33.333 0.00 0.00 46.59 1.52
2375 7295 7.384115 GCCTTCAGAACCTAAAAATGGTTTAAC 59.616 37.037 0.00 0.00 46.59 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.720667 TGAACGCATGATTTAAGAGATAAAATG 57.279 29.630 0.00 0.00 37.06 2.32
96 97 2.267426 ACGCGATGAATTCAACGATGA 58.733 42.857 33.76 2.12 43.47 2.92
105 106 2.783828 AGATCTCGACGCGATGAATT 57.216 45.000 15.93 0.00 34.61 2.17
182 183 9.716507 TTCTTTTTCTTTTTAGATGTTCGTCTG 57.283 29.630 4.97 0.00 0.00 3.51
192 193 7.337436 TGGTCGGTCTTTCTTTTTCTTTTTAGA 59.663 33.333 0.00 0.00 0.00 2.10
193 194 7.477494 TGGTCGGTCTTTCTTTTTCTTTTTAG 58.523 34.615 0.00 0.00 0.00 1.85
195 196 6.275494 TGGTCGGTCTTTCTTTTTCTTTTT 57.725 33.333 0.00 0.00 0.00 1.94
197 198 5.736207 GCATGGTCGGTCTTTCTTTTTCTTT 60.736 40.000 0.00 0.00 0.00 2.52
199 200 3.253432 GCATGGTCGGTCTTTCTTTTTCT 59.747 43.478 0.00 0.00 0.00 2.52
203 204 1.202879 TGGCATGGTCGGTCTTTCTTT 60.203 47.619 0.00 0.00 0.00 2.52
205 206 0.620556 ATGGCATGGTCGGTCTTTCT 59.379 50.000 0.00 0.00 0.00 2.52
206 207 1.463674 AATGGCATGGTCGGTCTTTC 58.536 50.000 0.00 0.00 0.00 2.62
208 209 1.923356 AAAATGGCATGGTCGGTCTT 58.077 45.000 0.00 0.00 0.00 3.01
209 210 1.923356 AAAAATGGCATGGTCGGTCT 58.077 45.000 0.00 0.00 0.00 3.85
231 232 7.798982 GTGTCTCGAAAATGACTTTAGAAAAGG 59.201 37.037 4.56 0.00 34.57 3.11
243 244 1.144969 GCCGTGTGTCTCGAAAATGA 58.855 50.000 0.00 0.00 0.00 2.57
267 268 0.035439 GGATTTGGTTCTGCGGGAGA 60.035 55.000 0.00 0.00 0.00 3.71
271 272 1.501741 CACGGATTTGGTTCTGCGG 59.498 57.895 0.00 0.00 0.00 5.69
279 280 1.006832 CGTAAGAGGCACGGATTTGG 58.993 55.000 0.00 0.00 43.02 3.28
324 325 2.422597 TGGTTGTGCCTATCAGAAACG 58.577 47.619 0.00 0.00 38.39 3.60
340 341 1.548582 CCTTCCACAAGAGGCATGGTT 60.549 52.381 0.00 0.00 34.89 3.67
341 342 0.038744 CCTTCCACAAGAGGCATGGT 59.961 55.000 0.00 0.00 34.89 3.55
376 378 2.160417 GGTCATGCCTCTCGAAAACAAG 59.840 50.000 0.00 0.00 0.00 3.16
377 379 2.151202 GGTCATGCCTCTCGAAAACAA 58.849 47.619 0.00 0.00 0.00 2.83
378 380 1.808411 GGTCATGCCTCTCGAAAACA 58.192 50.000 0.00 0.00 0.00 2.83
379 381 0.721718 CGGTCATGCCTCTCGAAAAC 59.278 55.000 4.92 0.00 34.25 2.43
384 386 2.887568 GCACGGTCATGCCTCTCG 60.888 66.667 4.92 0.00 39.86 4.04
401 403 5.118990 TCATATTTTTCCTTCAGCGAGAGG 58.881 41.667 0.00 0.00 0.00 3.69
402 404 5.814705 ACTCATATTTTTCCTTCAGCGAGAG 59.185 40.000 0.00 0.00 0.00 3.20
403 405 5.734720 ACTCATATTTTTCCTTCAGCGAGA 58.265 37.500 0.00 0.00 0.00 4.04
404 406 6.428385 AACTCATATTTTTCCTTCAGCGAG 57.572 37.500 0.00 0.00 0.00 5.03
405 407 6.817765 AAACTCATATTTTTCCTTCAGCGA 57.182 33.333 0.00 0.00 0.00 4.93
406 408 7.873739 AAAAACTCATATTTTTCCTTCAGCG 57.126 32.000 0.00 0.00 37.21 5.18
445 448 0.665369 TTTCTTTCGCGGGAGTCGTC 60.665 55.000 6.13 0.00 41.72 4.20
449 452 2.249844 TCTTTTTCTTTCGCGGGAGT 57.750 45.000 6.13 0.00 0.00 3.85
453 456 4.502645 ACATGTTTTCTTTTTCTTTCGCGG 59.497 37.500 6.13 0.00 0.00 6.46
455 458 8.653984 AAAAACATGTTTTCTTTTTCTTTCGC 57.346 26.923 31.10 0.00 41.45 4.70
491 497 9.436957 CAGTCTTTCTTAGCTTTTGGACTAATA 57.563 33.333 0.00 0.00 32.54 0.98
498 504 5.299279 TCAACCAGTCTTTCTTAGCTTTTGG 59.701 40.000 0.00 0.00 0.00 3.28
520 526 4.899502 TGTTTCTGGCTTTTTGGTTTTCA 58.100 34.783 0.00 0.00 0.00 2.69
528 534 3.625649 TTTGGCTGTTTCTGGCTTTTT 57.374 38.095 0.00 0.00 0.00 1.94
552 558 5.006261 GCACGTGTTTTTGGCTTTTTAGAAT 59.994 36.000 18.38 0.00 0.00 2.40
553 559 4.327627 GCACGTGTTTTTGGCTTTTTAGAA 59.672 37.500 18.38 0.00 0.00 2.10
556 562 2.930682 GGCACGTGTTTTTGGCTTTTTA 59.069 40.909 18.38 0.00 35.47 1.52
582 588 4.014406 GCTCCCTCCGGATTTTCTAAAAA 58.986 43.478 3.57 0.00 37.60 1.94
585 591 2.093128 GTGCTCCCTCCGGATTTTCTAA 60.093 50.000 3.57 0.00 37.60 2.10
586 592 1.485066 GTGCTCCCTCCGGATTTTCTA 59.515 52.381 3.57 0.00 37.60 2.10
588 594 0.748367 GGTGCTCCCTCCGGATTTTC 60.748 60.000 3.57 0.00 37.60 2.29
607 615 4.700365 TCACGTGTCGCGCTCTGG 62.700 66.667 16.51 0.00 46.11 3.86
608 616 3.461982 GTCACGTGTCGCGCTCTG 61.462 66.667 16.51 0.00 46.11 3.35
625 633 4.803426 GAGACCACTCAGCCGCCG 62.803 72.222 0.00 0.00 42.21 6.46
638 646 2.743928 CTTGCGGTGGGCTGAGAC 60.744 66.667 0.00 0.00 44.05 3.36
675 683 5.283717 CAATTAATTGAGGAACGCTTGTTCG 59.716 40.000 21.35 0.00 44.78 3.95
676 684 5.060940 GCAATTAATTGAGGAACGCTTGTTC 59.939 40.000 28.33 4.94 44.01 3.18
677 685 4.923281 GCAATTAATTGAGGAACGCTTGTT 59.077 37.500 28.33 0.00 40.14 2.83
678 686 4.485163 GCAATTAATTGAGGAACGCTTGT 58.515 39.130 28.33 0.00 40.14 3.16
679 687 3.859386 GGCAATTAATTGAGGAACGCTTG 59.141 43.478 28.33 2.84 40.14 4.01
680 688 3.119137 GGGCAATTAATTGAGGAACGCTT 60.119 43.478 28.33 0.00 40.14 4.68
681 689 2.427095 GGGCAATTAATTGAGGAACGCT 59.573 45.455 28.33 0.00 40.14 5.07
682 690 2.427095 AGGGCAATTAATTGAGGAACGC 59.573 45.455 28.33 18.16 40.14 4.84
683 691 3.947834 AGAGGGCAATTAATTGAGGAACG 59.052 43.478 28.33 3.97 40.14 3.95
684 692 6.122964 ACTAGAGGGCAATTAATTGAGGAAC 58.877 40.000 28.33 15.33 40.14 3.62
685 693 6.327386 ACTAGAGGGCAATTAATTGAGGAA 57.673 37.500 28.33 9.47 40.14 3.36
686 694 5.975988 ACTAGAGGGCAATTAATTGAGGA 57.024 39.130 28.33 8.41 40.14 3.71
687 695 6.360618 AGAACTAGAGGGCAATTAATTGAGG 58.639 40.000 28.33 12.70 40.14 3.86
688 696 6.484977 GGAGAACTAGAGGGCAATTAATTGAG 59.515 42.308 28.33 18.16 40.14 3.02
689 697 6.357367 GGAGAACTAGAGGGCAATTAATTGA 58.643 40.000 28.33 8.33 40.14 2.57
690 698 5.532779 GGGAGAACTAGAGGGCAATTAATTG 59.467 44.000 21.54 21.54 40.66 2.32
691 699 5.433381 AGGGAGAACTAGAGGGCAATTAATT 59.567 40.000 0.00 0.00 0.00 1.40
692 700 4.978388 AGGGAGAACTAGAGGGCAATTAAT 59.022 41.667 0.00 0.00 0.00 1.40
693 701 4.371681 AGGGAGAACTAGAGGGCAATTAA 58.628 43.478 0.00 0.00 0.00 1.40
694 702 4.008916 AGGGAGAACTAGAGGGCAATTA 57.991 45.455 0.00 0.00 0.00 1.40
695 703 2.852130 AGGGAGAACTAGAGGGCAATT 58.148 47.619 0.00 0.00 0.00 2.32
696 704 2.577772 AGGGAGAACTAGAGGGCAAT 57.422 50.000 0.00 0.00 0.00 3.56
697 705 2.305927 CAAAGGGAGAACTAGAGGGCAA 59.694 50.000 0.00 0.00 0.00 4.52
698 706 1.909302 CAAAGGGAGAACTAGAGGGCA 59.091 52.381 0.00 0.00 0.00 5.36
699 707 1.407575 GCAAAGGGAGAACTAGAGGGC 60.408 57.143 0.00 0.00 0.00 5.19
700 708 1.909302 TGCAAAGGGAGAACTAGAGGG 59.091 52.381 0.00 0.00 0.00 4.30
701 709 2.355209 GGTGCAAAGGGAGAACTAGAGG 60.355 54.545 0.00 0.00 0.00 3.69
702 710 2.675317 CGGTGCAAAGGGAGAACTAGAG 60.675 54.545 0.00 0.00 0.00 2.43
703 711 1.275291 CGGTGCAAAGGGAGAACTAGA 59.725 52.381 0.00 0.00 0.00 2.43
704 712 1.726853 CGGTGCAAAGGGAGAACTAG 58.273 55.000 0.00 0.00 0.00 2.57
705 713 0.321298 GCGGTGCAAAGGGAGAACTA 60.321 55.000 0.00 0.00 0.00 2.24
706 714 1.600916 GCGGTGCAAAGGGAGAACT 60.601 57.895 0.00 0.00 0.00 3.01
783 792 7.142680 GTCCGTCCTAATTTTTGAAAACATGA 58.857 34.615 0.00 0.00 0.00 3.07
786 795 6.127703 TGTGTCCGTCCTAATTTTTGAAAACA 60.128 34.615 0.00 0.00 0.00 2.83
808 817 0.249573 AGTAACACGGACCGGTTGTG 60.250 55.000 28.99 28.99 39.47 3.33
817 826 4.201901 GGAAAAACGGAAAAGTAACACGGA 60.202 41.667 0.00 0.00 0.00 4.69
831 840 5.761165 TTTTAGGAGTTCAGGAAAAACGG 57.239 39.130 0.00 0.00 0.00 4.44
846 855 3.102204 CGGAGGGAGTAGGTTTTTAGGA 58.898 50.000 0.00 0.00 0.00 2.94
859 868 4.184629 CAAGTAATTCTGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
860 869 3.581332 ACAAGTAATTCTGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
861 870 3.933332 GACAAGTAATTCTGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
862 871 3.612860 CGACAAGTAATTCTGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
863 872 3.060895 GCGACAAGTAATTCTGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
864 873 2.991190 GCGACAAGTAATTCTGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
865 874 2.222508 CGCGACAAGTAATTCTGAACGG 60.223 50.000 0.00 0.00 0.00 4.44
866 875 2.659757 TCGCGACAAGTAATTCTGAACG 59.340 45.455 3.71 0.00 0.00 3.95
867 876 4.640805 TTCGCGACAAGTAATTCTGAAC 57.359 40.909 9.15 0.00 0.00 3.18
868 877 5.660629 TTTTCGCGACAAGTAATTCTGAA 57.339 34.783 9.15 0.00 0.00 3.02
869 878 5.390461 CCATTTTCGCGACAAGTAATTCTGA 60.390 40.000 9.15 0.00 0.00 3.27
870 879 4.788100 CCATTTTCGCGACAAGTAATTCTG 59.212 41.667 9.15 1.59 0.00 3.02
871 880 4.693566 TCCATTTTCGCGACAAGTAATTCT 59.306 37.500 9.15 0.00 0.00 2.40
872 881 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
873 882 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
874 883 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
875 884 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
876 885 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
877 886 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
878 887 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
879 888 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
880 889 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
881 890 5.220381 TCTAGATACATCCATTTTCGCGAC 58.780 41.667 9.15 0.00 0.00 5.19
882 891 5.447624 TCTAGATACATCCATTTTCGCGA 57.552 39.130 3.71 3.71 0.00 5.87
883 892 5.635280 ACATCTAGATACATCCATTTTCGCG 59.365 40.000 4.54 0.00 0.00 5.87
884 893 8.709386 ATACATCTAGATACATCCATTTTCGC 57.291 34.615 4.54 0.00 0.00 4.70
909 918 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
910 919 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
911 920 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
912 921 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
913 922 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
914 923 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
915 924 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
916 925 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
917 926 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
918 927 6.724893 TTGTCTCGGAAATGGATGTATCTA 57.275 37.500 0.00 0.00 0.00 1.98
919 928 5.614324 TTGTCTCGGAAATGGATGTATCT 57.386 39.130 0.00 0.00 0.00 1.98
920 929 6.867662 ATTTGTCTCGGAAATGGATGTATC 57.132 37.500 0.00 0.00 0.00 2.24
921 930 8.924511 ATTATTTGTCTCGGAAATGGATGTAT 57.075 30.769 0.00 0.00 0.00 2.29
922 931 8.746052 AATTATTTGTCTCGGAAATGGATGTA 57.254 30.769 0.00 0.00 0.00 2.29
923 932 7.645058 AATTATTTGTCTCGGAAATGGATGT 57.355 32.000 0.00 0.00 0.00 3.06
924 933 7.376866 CGAAATTATTTGTCTCGGAAATGGATG 59.623 37.037 0.00 0.00 0.00 3.51
925 934 7.282224 TCGAAATTATTTGTCTCGGAAATGGAT 59.718 33.333 0.00 0.00 0.00 3.41
926 935 6.596106 TCGAAATTATTTGTCTCGGAAATGGA 59.404 34.615 0.00 0.00 0.00 3.41
927 936 6.781138 TCGAAATTATTTGTCTCGGAAATGG 58.219 36.000 0.00 0.00 0.00 3.16
928 937 7.045612 CGTTCGAAATTATTTGTCTCGGAAATG 60.046 37.037 0.00 0.00 0.00 2.32
929 938 6.959311 CGTTCGAAATTATTTGTCTCGGAAAT 59.041 34.615 0.00 0.00 0.00 2.17
930 939 6.301108 CGTTCGAAATTATTTGTCTCGGAAA 58.699 36.000 0.00 0.00 0.00 3.13
931 940 5.163933 CCGTTCGAAATTATTTGTCTCGGAA 60.164 40.000 0.00 0.00 34.20 4.30
932 941 4.327898 CCGTTCGAAATTATTTGTCTCGGA 59.672 41.667 0.00 0.00 34.20 4.55
933 942 4.327898 TCCGTTCGAAATTATTTGTCTCGG 59.672 41.667 0.00 4.15 33.93 4.63
934 943 5.444586 TCCGTTCGAAATTATTTGTCTCG 57.555 39.130 0.00 0.00 0.00 4.04
935 944 5.220605 CCCTCCGTTCGAAATTATTTGTCTC 60.221 44.000 0.00 0.00 0.00 3.36
936 945 4.634443 CCCTCCGTTCGAAATTATTTGTCT 59.366 41.667 0.00 0.00 0.00 3.41
937 946 4.632688 TCCCTCCGTTCGAAATTATTTGTC 59.367 41.667 0.00 0.00 0.00 3.18
938 947 4.581868 TCCCTCCGTTCGAAATTATTTGT 58.418 39.130 0.00 0.00 0.00 2.83
939 948 4.634443 ACTCCCTCCGTTCGAAATTATTTG 59.366 41.667 0.00 0.00 0.00 2.32
940 949 4.840271 ACTCCCTCCGTTCGAAATTATTT 58.160 39.130 0.00 0.00 0.00 1.40
941 950 4.482952 ACTCCCTCCGTTCGAAATTATT 57.517 40.909 0.00 0.00 0.00 1.40
942 951 5.803237 ATACTCCCTCCGTTCGAAATTAT 57.197 39.130 0.00 0.00 0.00 1.28
943 952 5.603170 AATACTCCCTCCGTTCGAAATTA 57.397 39.130 0.00 0.00 0.00 1.40
944 953 4.482952 AATACTCCCTCCGTTCGAAATT 57.517 40.909 0.00 0.00 0.00 1.82
945 954 4.189231 CAAATACTCCCTCCGTTCGAAAT 58.811 43.478 0.00 0.00 0.00 2.17
946 955 3.592059 CAAATACTCCCTCCGTTCGAAA 58.408 45.455 0.00 0.00 0.00 3.46
947 956 2.093869 CCAAATACTCCCTCCGTTCGAA 60.094 50.000 0.00 0.00 0.00 3.71
948 957 1.479323 CCAAATACTCCCTCCGTTCGA 59.521 52.381 0.00 0.00 0.00 3.71
949 958 1.935933 CCAAATACTCCCTCCGTTCG 58.064 55.000 0.00 0.00 0.00 3.95
950 959 1.664873 GCCAAATACTCCCTCCGTTC 58.335 55.000 0.00 0.00 0.00 3.95
951 960 0.107848 CGCCAAATACTCCCTCCGTT 60.108 55.000 0.00 0.00 0.00 4.44
952 961 1.520666 CGCCAAATACTCCCTCCGT 59.479 57.895 0.00 0.00 0.00 4.69
953 962 1.227556 CCGCCAAATACTCCCTCCG 60.228 63.158 0.00 0.00 0.00 4.63
954 963 1.526225 GCCGCCAAATACTCCCTCC 60.526 63.158 0.00 0.00 0.00 4.30
955 964 0.756903 TAGCCGCCAAATACTCCCTC 59.243 55.000 0.00 0.00 0.00 4.30
956 965 0.759346 CTAGCCGCCAAATACTCCCT 59.241 55.000 0.00 0.00 0.00 4.20
957 966 0.250338 CCTAGCCGCCAAATACTCCC 60.250 60.000 0.00 0.00 0.00 4.30
958 967 0.250338 CCCTAGCCGCCAAATACTCC 60.250 60.000 0.00 0.00 0.00 3.85
959 968 0.885150 GCCCTAGCCGCCAAATACTC 60.885 60.000 0.00 0.00 0.00 2.59
960 969 1.148498 GCCCTAGCCGCCAAATACT 59.852 57.895 0.00 0.00 0.00 2.12
961 970 2.251642 CGCCCTAGCCGCCAAATAC 61.252 63.158 0.00 0.00 34.57 1.89
962 971 2.110213 CGCCCTAGCCGCCAAATA 59.890 61.111 0.00 0.00 34.57 1.40
963 972 4.875713 CCGCCCTAGCCGCCAAAT 62.876 66.667 0.00 0.00 34.57 2.32
994 1003 1.337260 GCCGATTAGATCCATGAGCGT 60.337 52.381 0.00 0.00 0.00 5.07
995 1004 1.354040 GCCGATTAGATCCATGAGCG 58.646 55.000 0.00 0.00 0.00 5.03
996 1005 1.354040 CGCCGATTAGATCCATGAGC 58.646 55.000 0.00 0.00 0.00 4.26
1001 1010 1.069090 GCACCGCCGATTAGATCCA 59.931 57.895 0.00 0.00 0.00 3.41
1024 1034 0.399454 CCATCCTCCATTGATCGCCT 59.601 55.000 0.00 0.00 0.00 5.52
1025 1035 1.239968 GCCATCCTCCATTGATCGCC 61.240 60.000 0.00 0.00 0.00 5.54
1034 1044 1.616725 GGTTGATGTTGCCATCCTCCA 60.617 52.381 1.14 0.00 45.78 3.86
1052 1062 1.460689 TTTGTCCCTCCTGTCCGGT 60.461 57.895 0.00 0.00 0.00 5.28
1057 1067 0.111253 CTTGCCTTTGTCCCTCCTGT 59.889 55.000 0.00 0.00 0.00 4.00
1060 1070 1.304464 CCCTTGCCTTTGTCCCTCC 60.304 63.158 0.00 0.00 0.00 4.30
1079 1089 2.267961 GTGGGGTAAGGAGTGCCG 59.732 66.667 0.00 0.00 39.96 5.69
1119 1130 3.079478 AGCCTCATGAGCGCCTCA 61.079 61.111 24.08 8.00 44.99 3.86
1168 1179 2.611518 CTCTTCCAGGTCGTTGATCAC 58.388 52.381 0.00 0.00 0.00 3.06
1169 1180 1.550524 CCTCTTCCAGGTCGTTGATCA 59.449 52.381 0.00 0.00 37.53 2.92
1170 1181 1.825474 TCCTCTTCCAGGTCGTTGATC 59.175 52.381 0.00 0.00 43.95 2.92
1171 1182 1.938585 TCCTCTTCCAGGTCGTTGAT 58.061 50.000 0.00 0.00 43.95 2.57
1172 1183 1.618837 CTTCCTCTTCCAGGTCGTTGA 59.381 52.381 0.00 0.00 43.95 3.18
1173 1184 1.338200 CCTTCCTCTTCCAGGTCGTTG 60.338 57.143 0.00 0.00 43.95 4.10
1174 1185 0.977395 CCTTCCTCTTCCAGGTCGTT 59.023 55.000 0.00 0.00 43.95 3.85
1175 1186 0.178929 ACCTTCCTCTTCCAGGTCGT 60.179 55.000 0.00 0.00 43.95 4.34
1176 1187 0.247736 CACCTTCCTCTTCCAGGTCG 59.752 60.000 0.00 0.00 43.95 4.79
1177 1188 1.645710 TCACCTTCCTCTTCCAGGTC 58.354 55.000 0.00 0.00 43.95 3.85
1178 1189 2.350863 ATCACCTTCCTCTTCCAGGT 57.649 50.000 0.00 0.00 43.95 4.00
1179 1190 3.009473 TCAAATCACCTTCCTCTTCCAGG 59.991 47.826 0.00 0.00 45.15 4.45
1180 1191 4.292186 TCAAATCACCTTCCTCTTCCAG 57.708 45.455 0.00 0.00 0.00 3.86
1181 1192 4.104738 ACTTCAAATCACCTTCCTCTTCCA 59.895 41.667 0.00 0.00 0.00 3.53
1182 1193 4.457257 CACTTCAAATCACCTTCCTCTTCC 59.543 45.833 0.00 0.00 0.00 3.46
1183 1194 4.457257 CCACTTCAAATCACCTTCCTCTTC 59.543 45.833 0.00 0.00 0.00 2.87
1184 1195 4.141158 ACCACTTCAAATCACCTTCCTCTT 60.141 41.667 0.00 0.00 0.00 2.85
1185 1196 3.395941 ACCACTTCAAATCACCTTCCTCT 59.604 43.478 0.00 0.00 0.00 3.69
1186 1197 3.756117 ACCACTTCAAATCACCTTCCTC 58.244 45.455 0.00 0.00 0.00 3.71
1187 1198 3.884037 ACCACTTCAAATCACCTTCCT 57.116 42.857 0.00 0.00 0.00 3.36
1188 1199 3.552890 GCAACCACTTCAAATCACCTTCC 60.553 47.826 0.00 0.00 0.00 3.46
1189 1200 3.319122 AGCAACCACTTCAAATCACCTTC 59.681 43.478 0.00 0.00 0.00 3.46
1190 1201 3.068590 CAGCAACCACTTCAAATCACCTT 59.931 43.478 0.00 0.00 0.00 3.50
1191 1202 2.624838 CAGCAACCACTTCAAATCACCT 59.375 45.455 0.00 0.00 0.00 4.00
1192 1203 2.288395 CCAGCAACCACTTCAAATCACC 60.288 50.000 0.00 0.00 0.00 4.02
1193 1204 2.863704 GCCAGCAACCACTTCAAATCAC 60.864 50.000 0.00 0.00 0.00 3.06
1194 1205 1.340889 GCCAGCAACCACTTCAAATCA 59.659 47.619 0.00 0.00 0.00 2.57
1195 1206 1.340889 TGCCAGCAACCACTTCAAATC 59.659 47.619 0.00 0.00 0.00 2.17
1196 1207 1.342174 CTGCCAGCAACCACTTCAAAT 59.658 47.619 0.00 0.00 0.00 2.32
1197 1208 0.746063 CTGCCAGCAACCACTTCAAA 59.254 50.000 0.00 0.00 0.00 2.69
1198 1209 0.395586 ACTGCCAGCAACCACTTCAA 60.396 50.000 0.00 0.00 0.00 2.69
1199 1210 0.395586 AACTGCCAGCAACCACTTCA 60.396 50.000 0.00 0.00 0.00 3.02
1200 1211 1.604604 TAACTGCCAGCAACCACTTC 58.395 50.000 0.00 0.00 0.00 3.01
1201 1212 2.065899 TTAACTGCCAGCAACCACTT 57.934 45.000 0.00 0.00 0.00 3.16
1202 1213 1.956477 CTTTAACTGCCAGCAACCACT 59.044 47.619 0.00 0.00 0.00 4.00
1203 1214 1.681264 ACTTTAACTGCCAGCAACCAC 59.319 47.619 0.00 0.00 0.00 4.16
1204 1215 2.065899 ACTTTAACTGCCAGCAACCA 57.934 45.000 0.00 0.00 0.00 3.67
1205 1216 3.452755 AAACTTTAACTGCCAGCAACC 57.547 42.857 0.00 0.00 0.00 3.77
1206 1217 3.001228 GCAAAACTTTAACTGCCAGCAAC 59.999 43.478 0.00 0.00 0.00 4.17
1207 1218 3.194062 GCAAAACTTTAACTGCCAGCAA 58.806 40.909 0.00 0.00 0.00 3.91
1208 1219 2.167281 TGCAAAACTTTAACTGCCAGCA 59.833 40.909 0.00 0.00 33.78 4.41
1209 1220 2.539688 GTGCAAAACTTTAACTGCCAGC 59.460 45.455 0.00 0.00 33.78 4.85
1210 1221 3.123050 GGTGCAAAACTTTAACTGCCAG 58.877 45.455 0.00 0.00 33.78 4.85
1211 1222 2.480416 CGGTGCAAAACTTTAACTGCCA 60.480 45.455 0.00 0.00 33.78 4.92
1212 1223 2.124122 CGGTGCAAAACTTTAACTGCC 58.876 47.619 0.00 0.00 33.78 4.85
1213 1224 1.521006 GCGGTGCAAAACTTTAACTGC 59.479 47.619 0.00 5.66 33.78 4.40
1214 1225 2.533942 GTGCGGTGCAAAACTTTAACTG 59.466 45.455 0.00 0.00 41.47 3.16
1215 1226 2.793237 CGTGCGGTGCAAAACTTTAACT 60.793 45.455 0.00 0.00 41.47 2.24
1216 1227 1.515221 CGTGCGGTGCAAAACTTTAAC 59.485 47.619 0.00 0.00 41.47 2.01
1217 1228 1.132643 ACGTGCGGTGCAAAACTTTAA 59.867 42.857 0.00 0.00 41.47 1.52
1218 1229 0.733729 ACGTGCGGTGCAAAACTTTA 59.266 45.000 0.00 0.00 41.47 1.85
1219 1230 0.109039 AACGTGCGGTGCAAAACTTT 60.109 45.000 0.00 0.00 41.47 2.66
1220 1231 0.733729 TAACGTGCGGTGCAAAACTT 59.266 45.000 0.00 0.00 41.47 2.66
1221 1232 0.028374 GTAACGTGCGGTGCAAAACT 59.972 50.000 0.00 0.00 41.47 2.66
1222 1233 0.028374 AGTAACGTGCGGTGCAAAAC 59.972 50.000 0.16 0.00 41.47 2.43
1223 1234 0.305313 GAGTAACGTGCGGTGCAAAA 59.695 50.000 0.16 0.00 41.47 2.44
1224 1235 1.500512 GGAGTAACGTGCGGTGCAAA 61.501 55.000 0.16 0.00 41.47 3.68
1225 1236 1.957186 GGAGTAACGTGCGGTGCAA 60.957 57.895 0.16 0.00 41.47 4.08
1226 1237 2.356553 GGAGTAACGTGCGGTGCA 60.357 61.111 0.16 0.00 35.60 4.57
1227 1238 2.356553 TGGAGTAACGTGCGGTGC 60.357 61.111 0.00 0.00 0.00 5.01
1228 1239 2.369629 CGTGGAGTAACGTGCGGTG 61.370 63.158 0.00 0.00 38.74 4.94
1229 1240 2.049802 CGTGGAGTAACGTGCGGT 60.050 61.111 0.00 0.00 38.74 5.68
1254 1265 3.001330 CCAGGCGTAAAACGATGAAGATC 59.999 47.826 3.22 0.00 46.05 2.75
1255 1266 2.936498 CCAGGCGTAAAACGATGAAGAT 59.064 45.455 3.22 0.00 46.05 2.40
1256 1267 2.343101 CCAGGCGTAAAACGATGAAGA 58.657 47.619 3.22 0.00 46.05 2.87
1257 1268 1.202031 GCCAGGCGTAAAACGATGAAG 60.202 52.381 0.00 0.00 46.05 3.02
1258 1269 0.800012 GCCAGGCGTAAAACGATGAA 59.200 50.000 0.00 0.00 46.05 2.57
1259 1270 1.022451 GGCCAGGCGTAAAACGATGA 61.022 55.000 5.00 0.00 46.05 2.92
1260 1271 1.024579 AGGCCAGGCGTAAAACGATG 61.025 55.000 4.32 1.28 46.05 3.84
1261 1272 0.538118 TAGGCCAGGCGTAAAACGAT 59.462 50.000 11.61 0.00 46.05 3.73
1262 1273 0.108520 CTAGGCCAGGCGTAAAACGA 60.109 55.000 14.78 0.00 46.05 3.85
1263 1274 1.087771 CCTAGGCCAGGCGTAAAACG 61.088 60.000 14.78 3.55 45.88 3.60
1264 1275 0.251073 TCCTAGGCCAGGCGTAAAAC 59.749 55.000 14.78 0.00 45.10 2.43
1265 1276 0.251073 GTCCTAGGCCAGGCGTAAAA 59.749 55.000 14.78 3.50 45.10 1.52
1266 1277 0.905809 TGTCCTAGGCCAGGCGTAAA 60.906 55.000 14.78 3.84 45.10 2.01
1267 1278 0.905809 TTGTCCTAGGCCAGGCGTAA 60.906 55.000 14.78 0.00 45.10 3.18
1268 1279 1.305465 TTGTCCTAGGCCAGGCGTA 60.305 57.895 13.31 13.31 45.10 4.42
1269 1280 2.606519 TTGTCCTAGGCCAGGCGT 60.607 61.111 12.28 12.28 45.10 5.68
1270 1281 2.125106 GTTGTCCTAGGCCAGGCG 60.125 66.667 5.01 0.00 45.10 5.52
1271 1282 2.272471 GGTTGTCCTAGGCCAGGC 59.728 66.667 5.01 1.26 45.10 4.85
1273 1284 0.035056 CTTGGGTTGTCCTAGGCCAG 60.035 60.000 5.01 0.00 35.21 4.85
1274 1285 2.074967 CTTGGGTTGTCCTAGGCCA 58.925 57.895 5.01 1.92 35.21 5.36
1278 1289 1.208165 AGCCCCTTGGGTTGTCCTAG 61.208 60.000 4.84 0.00 46.51 3.02
1279 1290 1.151677 AGCCCCTTGGGTTGTCCTA 60.152 57.895 4.84 0.00 46.51 2.94
1280 1291 2.452491 AGCCCCTTGGGTTGTCCT 60.452 61.111 4.84 0.00 46.51 3.85
1281 1292 2.035783 GAGCCCCTTGGGTTGTCC 59.964 66.667 4.84 0.00 46.51 4.02
1282 1293 2.198304 ATCGAGCCCCTTGGGTTGTC 62.198 60.000 4.84 0.00 46.51 3.18
1283 1294 1.789576 AATCGAGCCCCTTGGGTTGT 61.790 55.000 4.84 0.00 46.51 3.32
1284 1295 1.000896 AATCGAGCCCCTTGGGTTG 60.001 57.895 4.84 0.00 46.51 3.77
1285 1296 1.000896 CAATCGAGCCCCTTGGGTT 60.001 57.895 4.84 0.00 46.51 4.11
1286 1297 2.677228 CAATCGAGCCCCTTGGGT 59.323 61.111 4.84 0.00 46.51 4.51
1288 1299 1.821332 GAGCAATCGAGCCCCTTGG 60.821 63.158 0.00 0.00 34.23 3.61
1289 1300 2.176273 CGAGCAATCGAGCCCCTTG 61.176 63.158 0.00 0.00 34.64 3.61
1290 1301 2.187946 CGAGCAATCGAGCCCCTT 59.812 61.111 0.00 0.00 34.64 3.95
1291 1302 3.854669 CCGAGCAATCGAGCCCCT 61.855 66.667 0.00 0.00 34.64 4.79
1292 1303 3.682292 AACCGAGCAATCGAGCCCC 62.682 63.158 0.00 0.00 34.64 5.80
1293 1304 2.125106 AACCGAGCAATCGAGCCC 60.125 61.111 0.00 0.00 34.64 5.19
1294 1305 3.093278 CAACCGAGCAATCGAGCC 58.907 61.111 0.00 0.00 34.64 4.70
1295 1306 0.806102 TAGCAACCGAGCAATCGAGC 60.806 55.000 0.00 1.01 36.85 5.03
1296 1307 1.202302 TCTAGCAACCGAGCAATCGAG 60.202 52.381 0.00 0.00 36.85 4.04
1297 1308 0.815095 TCTAGCAACCGAGCAATCGA 59.185 50.000 0.00 0.00 36.85 3.59
1298 1309 1.640428 TTCTAGCAACCGAGCAATCG 58.360 50.000 0.00 0.00 36.85 3.34
1299 1310 4.419522 TTTTTCTAGCAACCGAGCAATC 57.580 40.909 0.00 0.00 36.85 2.67
1318 1329 5.723295 ACTCTTCAGCAAACATGTGTTTTT 58.277 33.333 8.32 0.00 45.07 1.94
1319 1330 5.329035 ACTCTTCAGCAAACATGTGTTTT 57.671 34.783 8.32 0.00 45.07 2.43
1321 1332 4.496341 CGAACTCTTCAGCAAACATGTGTT 60.496 41.667 0.00 0.00 40.50 3.32
1322 1333 3.002656 CGAACTCTTCAGCAAACATGTGT 59.997 43.478 0.00 0.00 0.00 3.72
1323 1334 3.248363 TCGAACTCTTCAGCAAACATGTG 59.752 43.478 0.00 0.00 0.00 3.21
1324 1335 3.466836 TCGAACTCTTCAGCAAACATGT 58.533 40.909 0.00 0.00 0.00 3.21
1325 1336 4.472691 TTCGAACTCTTCAGCAAACATG 57.527 40.909 0.00 0.00 0.00 3.21
1326 1337 4.261197 GGTTTCGAACTCTTCAGCAAACAT 60.261 41.667 0.00 0.00 0.00 2.71
1327 1338 3.064820 GGTTTCGAACTCTTCAGCAAACA 59.935 43.478 0.00 0.00 0.00 2.83
1328 1339 3.064820 TGGTTTCGAACTCTTCAGCAAAC 59.935 43.478 0.00 0.00 0.00 2.93
1329 1340 3.275143 TGGTTTCGAACTCTTCAGCAAA 58.725 40.909 0.00 0.00 0.00 3.68
1330 1341 2.912771 TGGTTTCGAACTCTTCAGCAA 58.087 42.857 0.00 0.00 0.00 3.91
1331 1342 2.613026 TGGTTTCGAACTCTTCAGCA 57.387 45.000 0.00 0.00 0.00 4.41
1332 1343 2.349912 GCTTGGTTTCGAACTCTTCAGC 60.350 50.000 0.00 0.00 0.00 4.26
1333 1344 2.096713 CGCTTGGTTTCGAACTCTTCAG 60.097 50.000 0.00 0.00 0.00 3.02
1334 1345 1.864711 CGCTTGGTTTCGAACTCTTCA 59.135 47.619 0.00 0.00 0.00 3.02
1335 1346 1.194772 CCGCTTGGTTTCGAACTCTTC 59.805 52.381 0.00 0.00 0.00 2.87
1336 1347 1.226746 CCGCTTGGTTTCGAACTCTT 58.773 50.000 0.00 0.00 0.00 2.85
1337 1348 0.602905 CCCGCTTGGTTTCGAACTCT 60.603 55.000 0.00 0.00 0.00 3.24
1338 1349 1.866925 CCCGCTTGGTTTCGAACTC 59.133 57.895 0.00 0.00 0.00 3.01
1339 1350 4.058797 CCCGCTTGGTTTCGAACT 57.941 55.556 0.00 0.00 0.00 3.01
1348 1359 1.153369 ATGATCACGACCCGCTTGG 60.153 57.895 0.00 0.00 41.37 3.61
1349 1360 0.740868 ACATGATCACGACCCGCTTG 60.741 55.000 0.00 0.00 0.00 4.01
1350 1361 0.036388 AACATGATCACGACCCGCTT 60.036 50.000 0.00 0.00 0.00 4.68
1351 1362 0.036388 AAACATGATCACGACCCGCT 60.036 50.000 0.00 0.00 0.00 5.52
1352 1363 0.096976 CAAACATGATCACGACCCGC 59.903 55.000 0.00 0.00 0.00 6.13
1353 1364 0.726827 CCAAACATGATCACGACCCG 59.273 55.000 0.00 0.00 0.00 5.28
1354 1365 1.094785 CCCAAACATGATCACGACCC 58.905 55.000 0.00 0.00 0.00 4.46
1355 1366 2.009774 CTCCCAAACATGATCACGACC 58.990 52.381 0.00 0.00 0.00 4.79
1356 1367 2.932614 CTCTCCCAAACATGATCACGAC 59.067 50.000 0.00 0.00 0.00 4.34
1357 1368 2.677902 GCTCTCCCAAACATGATCACGA 60.678 50.000 0.00 0.00 0.00 4.35
1358 1369 1.667724 GCTCTCCCAAACATGATCACG 59.332 52.381 0.00 0.00 0.00 4.35
1359 1370 2.996631 AGCTCTCCCAAACATGATCAC 58.003 47.619 0.00 0.00 0.00 3.06
1360 1371 3.349927 CAAGCTCTCCCAAACATGATCA 58.650 45.455 0.00 0.00 0.00 2.92
1361 1372 2.098770 GCAAGCTCTCCCAAACATGATC 59.901 50.000 0.00 0.00 0.00 2.92
1362 1373 2.097825 GCAAGCTCTCCCAAACATGAT 58.902 47.619 0.00 0.00 0.00 2.45
1363 1374 1.538047 GCAAGCTCTCCCAAACATGA 58.462 50.000 0.00 0.00 0.00 3.07
1364 1375 0.529378 GGCAAGCTCTCCCAAACATG 59.471 55.000 0.00 0.00 0.00 3.21
1365 1376 0.112995 TGGCAAGCTCTCCCAAACAT 59.887 50.000 0.00 0.00 0.00 2.71
1366 1377 0.112995 ATGGCAAGCTCTCCCAAACA 59.887 50.000 0.00 0.00 31.43 2.83
1367 1378 0.529378 CATGGCAAGCTCTCCCAAAC 59.471 55.000 0.00 0.00 31.43 2.93
1368 1379 0.612732 CCATGGCAAGCTCTCCCAAA 60.613 55.000 0.00 0.00 31.43 3.28
1369 1380 1.000521 CCATGGCAAGCTCTCCCAA 60.001 57.895 0.00 0.00 31.43 4.12
1370 1381 2.679092 CCATGGCAAGCTCTCCCA 59.321 61.111 0.00 2.85 0.00 4.37
1371 1382 2.832201 GCCATGGCAAGCTCTCCC 60.832 66.667 32.08 0.00 41.49 4.30
1381 1392 3.318839 TGTTCTTGCTAATATGCCATGGC 59.681 43.478 30.54 30.54 42.35 4.40
1382 1393 4.581824 AGTGTTCTTGCTAATATGCCATGG 59.418 41.667 7.63 7.63 0.00 3.66
1383 1394 5.066893 ACAGTGTTCTTGCTAATATGCCATG 59.933 40.000 0.00 0.00 0.00 3.66
1384 1395 5.066893 CACAGTGTTCTTGCTAATATGCCAT 59.933 40.000 0.00 0.00 0.00 4.40
1385 1396 4.395854 CACAGTGTTCTTGCTAATATGCCA 59.604 41.667 0.00 0.00 0.00 4.92
1386 1397 4.635765 TCACAGTGTTCTTGCTAATATGCC 59.364 41.667 0.00 0.00 0.00 4.40
1387 1398 5.801350 TCACAGTGTTCTTGCTAATATGC 57.199 39.130 0.00 0.00 0.00 3.14
1388 1399 7.783090 AGATCACAGTGTTCTTGCTAATATG 57.217 36.000 8.17 0.00 0.00 1.78
1389 1400 9.539825 CTAAGATCACAGTGTTCTTGCTAATAT 57.460 33.333 27.09 9.28 37.11 1.28
1390 1401 8.749354 TCTAAGATCACAGTGTTCTTGCTAATA 58.251 33.333 27.09 12.18 37.11 0.98
1391 1402 7.615403 TCTAAGATCACAGTGTTCTTGCTAAT 58.385 34.615 27.09 10.40 37.11 1.73
1392 1403 6.993079 TCTAAGATCACAGTGTTCTTGCTAA 58.007 36.000 27.09 12.99 37.11 3.09
1393 1404 6.350528 CCTCTAAGATCACAGTGTTCTTGCTA 60.351 42.308 27.09 15.76 37.11 3.49
1394 1405 5.474578 TCTAAGATCACAGTGTTCTTGCT 57.525 39.130 27.09 11.54 37.11 3.91
1395 1406 4.629200 CCTCTAAGATCACAGTGTTCTTGC 59.371 45.833 27.09 0.00 37.11 4.01
1396 1407 6.030548 TCCTCTAAGATCACAGTGTTCTTG 57.969 41.667 27.09 19.39 37.11 3.02
1397 1408 6.672266 TTCCTCTAAGATCACAGTGTTCTT 57.328 37.500 24.08 24.08 39.15 2.52
1398 1409 6.865834 ATTCCTCTAAGATCACAGTGTTCT 57.134 37.500 8.17 8.17 0.00 3.01
1399 1410 8.254508 ACTAATTCCTCTAAGATCACAGTGTTC 58.745 37.037 0.00 1.65 0.00 3.18
1400 1411 8.140112 ACTAATTCCTCTAAGATCACAGTGTT 57.860 34.615 0.00 0.00 0.00 3.32
1401 1412 7.726033 ACTAATTCCTCTAAGATCACAGTGT 57.274 36.000 0.00 0.00 0.00 3.55
1402 1413 8.908903 ACTACTAATTCCTCTAAGATCACAGTG 58.091 37.037 0.00 0.00 0.00 3.66
1405 1416 9.916360 TGTACTACTAATTCCTCTAAGATCACA 57.084 33.333 0.00 0.00 0.00 3.58
1407 1418 9.352191 GGTGTACTACTAATTCCTCTAAGATCA 57.648 37.037 0.00 0.00 0.00 2.92
1408 1419 8.795513 GGGTGTACTACTAATTCCTCTAAGATC 58.204 40.741 0.00 0.00 0.00 2.75
1409 1420 7.447853 CGGGTGTACTACTAATTCCTCTAAGAT 59.552 40.741 0.00 0.00 0.00 2.40
1410 1421 6.769822 CGGGTGTACTACTAATTCCTCTAAGA 59.230 42.308 0.00 0.00 0.00 2.10
1411 1422 6.545298 ACGGGTGTACTACTAATTCCTCTAAG 59.455 42.308 0.00 0.00 0.00 2.18
1412 1423 6.319658 CACGGGTGTACTACTAATTCCTCTAA 59.680 42.308 0.00 0.00 0.00 2.10
1413 1424 5.824624 CACGGGTGTACTACTAATTCCTCTA 59.175 44.000 0.00 0.00 0.00 2.43
1414 1425 4.643784 CACGGGTGTACTACTAATTCCTCT 59.356 45.833 0.00 0.00 0.00 3.69
1415 1426 4.735873 GCACGGGTGTACTACTAATTCCTC 60.736 50.000 0.25 0.00 0.00 3.71
1416 1427 3.131755 GCACGGGTGTACTACTAATTCCT 59.868 47.826 0.25 0.00 0.00 3.36
1417 1428 3.451526 GCACGGGTGTACTACTAATTCC 58.548 50.000 0.25 0.00 0.00 3.01
1418 1429 3.111098 CGCACGGGTGTACTACTAATTC 58.889 50.000 0.25 0.00 0.00 2.17
1419 1430 2.493278 ACGCACGGGTGTACTACTAATT 59.507 45.455 0.00 0.00 35.59 1.40
1420 1431 2.094675 ACGCACGGGTGTACTACTAAT 58.905 47.619 0.00 0.00 35.59 1.73
1421 1432 1.533625 ACGCACGGGTGTACTACTAA 58.466 50.000 0.00 0.00 35.59 2.24
1442 1453 4.994907 TGTATGCATTGTAGTCCGTAGT 57.005 40.909 3.54 0.00 0.00 2.73
1449 1460 8.413229 GGGTGATTTATTTGTATGCATTGTAGT 58.587 33.333 3.54 0.00 0.00 2.73
1493 1633 8.597167 TCGGATGTATGAGGAATAAGATTTGAT 58.403 33.333 0.00 0.00 0.00 2.57
1495 1635 7.148507 GCTCGGATGTATGAGGAATAAGATTTG 60.149 40.741 0.00 0.00 32.78 2.32
1573 3004 0.833949 TGTATGCATTGTAGCCCGGA 59.166 50.000 3.54 0.00 0.00 5.14
2371 7291 3.054655 GGCTGAAGTAGTGATGGGGTTAA 60.055 47.826 0.00 0.00 0.00 2.01
2374 7294 0.912486 GGCTGAAGTAGTGATGGGGT 59.088 55.000 0.00 0.00 0.00 4.95
2375 7295 0.179073 CGGCTGAAGTAGTGATGGGG 60.179 60.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.