Multiple sequence alignment - TraesCS7A01G167400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G167400 chr7A 100.000 2297 0 0 1 2297 122682343 122684639 0.000000e+00 4242
1 TraesCS7A01G167400 chr7A 91.875 320 11 6 1960 2278 122684149 122684454 1.260000e-117 433
2 TraesCS7A01G167400 chr7A 91.875 320 11 6 1807 2112 122684302 122684620 1.260000e-117 433
3 TraesCS7A01G167400 chr7A 89.933 149 12 2 1683 1828 122682350 122682202 3.010000e-44 189
4 TraesCS7A01G167400 chr7A 84.431 167 11 6 2113 2278 122684149 122684301 1.420000e-32 150
5 TraesCS7A01G167400 chr7A 84.431 167 11 6 1807 1959 122684455 122684620 1.420000e-32 150
6 TraesCS7A01G167400 chr7D 87.239 1818 101 55 28 1797 118160595 118162329 0.000000e+00 1951
7 TraesCS7A01G167400 chr7D 88.276 145 14 2 1686 1828 118160573 118160430 1.090000e-38 171
8 TraesCS7A01G167400 chr7B 87.308 1040 66 18 526 1541 79315356 79316353 0.000000e+00 1129
9 TraesCS7A01G167400 chr7B 88.077 520 24 15 30 529 79313008 79313509 1.180000e-162 582
10 TraesCS7A01G167400 chr7B 90.000 170 14 3 1646 1813 79316350 79316518 1.380000e-52 217
11 TraesCS7A01G167400 chr7B 93.077 130 8 1 1685 1813 79313006 79312877 3.010000e-44 189
12 TraesCS7A01G167400 chr6A 93.939 99 5 1 1700 1797 55551266 55551364 5.110000e-32 148
13 TraesCS7A01G167400 chrUn 93.000 100 5 2 1700 1797 21199033 21198934 6.610000e-31 145
14 TraesCS7A01G167400 chrUn 91.000 100 8 1 1707 1806 110669966 110669868 1.430000e-27 134
15 TraesCS7A01G167400 chr4B 91.089 101 8 1 1707 1806 660670341 660670241 3.980000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G167400 chr7A 122682343 122684639 2296 False 1081.600000 4242 90.522400 1 2297 5 chr7A.!!$F1 2296
1 TraesCS7A01G167400 chr7D 118160595 118162329 1734 False 1951.000000 1951 87.239000 28 1797 1 chr7D.!!$F1 1769
2 TraesCS7A01G167400 chr7B 79313008 79316518 3510 False 642.666667 1129 88.461667 30 1813 3 chr7B.!!$F1 1783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 2536 0.034896 TCCCAAAGCGGAGTTGAGAC 59.965 55.0 0.0 0.0 36.56 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 4093 0.036164 TACCGGTTCATGCTGCAACT 59.964 50.0 15.04 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.515797 TCACATAATCCTACTCGACTTGG 57.484 43.478 0.00 0.00 0.00 3.61
23 24 4.954202 TCACATAATCCTACTCGACTTGGT 59.046 41.667 0.00 0.00 0.00 3.67
24 25 6.124340 TCACATAATCCTACTCGACTTGGTA 58.876 40.000 0.00 0.00 0.00 3.25
25 26 6.776116 TCACATAATCCTACTCGACTTGGTAT 59.224 38.462 0.00 0.00 0.00 2.73
26 27 7.040617 TCACATAATCCTACTCGACTTGGTATC 60.041 40.741 0.00 0.00 0.00 2.24
62 64 1.269517 TGTTCTTTGGCCGTCAATTGC 60.270 47.619 0.00 0.00 34.98 3.56
67 69 2.611225 TTGGCCGTCAATTGCTTTTT 57.389 40.000 0.00 0.00 0.00 1.94
68 70 2.147436 TGGCCGTCAATTGCTTTTTC 57.853 45.000 0.00 0.00 0.00 2.29
91 100 5.538053 TCTTACAATTCATTTTGCCTCCACA 59.462 36.000 0.00 0.00 0.00 4.17
94 103 2.747396 TTCATTTTGCCTCCACATGC 57.253 45.000 0.00 0.00 0.00 4.06
96 105 0.899720 CATTTTGCCTCCACATGCCT 59.100 50.000 0.00 0.00 0.00 4.75
97 106 1.134907 CATTTTGCCTCCACATGCCTC 60.135 52.381 0.00 0.00 0.00 4.70
98 107 0.178967 TTTTGCCTCCACATGCCTCA 60.179 50.000 0.00 0.00 0.00 3.86
101 110 2.273449 CCTCCACATGCCTCACCC 59.727 66.667 0.00 0.00 0.00 4.61
102 111 2.124983 CTCCACATGCCTCACCCG 60.125 66.667 0.00 0.00 0.00 5.28
103 112 2.927856 TCCACATGCCTCACCCGT 60.928 61.111 0.00 0.00 0.00 5.28
104 113 2.747460 CCACATGCCTCACCCGTG 60.747 66.667 0.00 0.00 0.00 4.94
105 114 2.032528 CACATGCCTCACCCGTGT 59.967 61.111 0.00 0.00 32.93 4.49
106 115 1.600636 CACATGCCTCACCCGTGTT 60.601 57.895 0.00 0.00 30.42 3.32
107 116 0.321210 CACATGCCTCACCCGTGTTA 60.321 55.000 0.00 0.00 30.42 2.41
176 185 3.242608 ACGATTGACAAAAACTGACCACG 60.243 43.478 0.00 0.00 0.00 4.94
177 186 3.001838 CGATTGACAAAAACTGACCACGA 59.998 43.478 0.00 0.00 0.00 4.35
178 187 4.527564 GATTGACAAAAACTGACCACGAG 58.472 43.478 0.00 0.00 0.00 4.18
179 188 1.668751 TGACAAAAACTGACCACGAGC 59.331 47.619 0.00 0.00 0.00 5.03
180 189 1.668751 GACAAAAACTGACCACGAGCA 59.331 47.619 0.00 0.00 0.00 4.26
271 302 0.316204 GCAGCAAGCAATGGACTTGT 59.684 50.000 5.50 0.00 45.09 3.16
311 342 4.312052 GCTGGACGCCATAAACCA 57.688 55.556 0.00 0.00 30.82 3.67
313 344 1.654023 GCTGGACGCCATAAACCACC 61.654 60.000 0.00 0.00 30.82 4.61
314 345 1.366111 CTGGACGCCATAAACCACCG 61.366 60.000 0.00 0.00 30.82 4.94
315 346 1.078988 GGACGCCATAAACCACCGA 60.079 57.895 0.00 0.00 0.00 4.69
316 347 0.463116 GGACGCCATAAACCACCGAT 60.463 55.000 0.00 0.00 0.00 4.18
556 2444 0.678048 AAATGGAGAGTGCGCCTTCC 60.678 55.000 4.18 7.30 34.70 3.46
576 2464 3.769201 GCCAATGGCCCTGCTATC 58.231 61.111 14.47 0.00 44.06 2.08
595 2483 1.426621 CATGACTCATGCGTGCCAC 59.573 57.895 6.08 0.00 35.02 5.01
596 2484 1.746615 ATGACTCATGCGTGCCACC 60.747 57.895 0.00 0.00 0.00 4.61
597 2485 2.046892 GACTCATGCGTGCCACCT 60.047 61.111 0.00 0.00 0.00 4.00
598 2486 2.046892 ACTCATGCGTGCCACCTC 60.047 61.111 0.00 0.00 0.00 3.85
599 2487 3.190849 CTCATGCGTGCCACCTCG 61.191 66.667 0.00 0.00 0.00 4.63
600 2488 4.758251 TCATGCGTGCCACCTCGG 62.758 66.667 0.00 0.00 38.11 4.63
601 2489 4.758251 CATGCGTGCCACCTCGGA 62.758 66.667 0.00 0.00 36.56 4.55
602 2490 4.457496 ATGCGTGCCACCTCGGAG 62.457 66.667 0.00 0.00 36.56 4.63
648 2536 0.034896 TCCCAAAGCGGAGTTGAGAC 59.965 55.000 0.00 0.00 36.56 3.36
699 2595 4.383052 CAGAGACACAAAGTACACGATGAC 59.617 45.833 0.00 0.00 0.00 3.06
711 2607 1.805539 CGATGACGAGCGAAGGCAA 60.806 57.895 0.00 0.00 43.41 4.52
741 2653 2.859165 TGAGGTTCAGATGTGGGAAC 57.141 50.000 0.00 0.00 42.00 3.62
870 2786 3.044809 CGACCAATCGTACACAGGG 57.955 57.895 0.00 0.00 43.66 4.45
911 2827 3.321111 TCTCTTCGACTGTAAGCCACTTT 59.679 43.478 0.00 0.00 37.60 2.66
917 2833 3.428870 CGACTGTAAGCCACTTTACACAG 59.571 47.826 7.03 7.03 38.31 3.66
923 2839 3.188159 AGCCACTTTACACAGTTCGAA 57.812 42.857 0.00 0.00 0.00 3.71
988 2904 6.473397 CAGTTGAGCTGGTTTAGTTCTTAG 57.527 41.667 0.00 0.00 41.42 2.18
989 2905 4.998033 AGTTGAGCTGGTTTAGTTCTTAGC 59.002 41.667 0.00 0.00 37.51 3.09
990 2906 3.939066 TGAGCTGGTTTAGTTCTTAGCC 58.061 45.455 0.00 0.00 37.51 3.93
991 2907 3.583086 TGAGCTGGTTTAGTTCTTAGCCT 59.417 43.478 0.00 0.00 37.51 4.58
992 2908 4.185394 GAGCTGGTTTAGTTCTTAGCCTC 58.815 47.826 0.00 0.00 34.17 4.70
993 2909 3.841255 AGCTGGTTTAGTTCTTAGCCTCT 59.159 43.478 0.00 0.00 31.82 3.69
994 2910 4.287326 AGCTGGTTTAGTTCTTAGCCTCTT 59.713 41.667 0.00 0.00 31.82 2.85
995 2911 5.484290 AGCTGGTTTAGTTCTTAGCCTCTTA 59.516 40.000 0.00 0.00 31.82 2.10
1218 3138 3.069318 GCCTTCTCCGACGTCCCT 61.069 66.667 10.58 0.00 0.00 4.20
1274 3194 4.783621 GCAGGCCGGTGATGCTGA 62.784 66.667 17.10 0.00 37.00 4.26
1275 3195 2.821366 CAGGCCGGTGATGCTGAC 60.821 66.667 1.90 0.00 0.00 3.51
1276 3196 4.101448 AGGCCGGTGATGCTGACC 62.101 66.667 1.90 0.00 0.00 4.02
1316 3238 4.782019 AGTTGAAGTGCTTTGTGTTGAA 57.218 36.364 0.00 0.00 0.00 2.69
1333 3255 4.921515 TGTTGAACTAATGTACGAGTCAGC 59.078 41.667 0.00 0.00 0.00 4.26
1355 3277 2.548480 GGTGCGTGCTTTCTTAGTTTCT 59.452 45.455 0.00 0.00 0.00 2.52
1359 3281 4.084013 TGCGTGCTTTCTTAGTTTCTTAGC 60.084 41.667 0.00 0.00 0.00 3.09
1367 3289 8.657729 GCTTTCTTAGTTTCTTAGCTATCGTTT 58.342 33.333 0.00 0.00 0.00 3.60
1374 3296 7.600065 AGTTTCTTAGCTATCGTTTGTAGTGA 58.400 34.615 0.00 0.00 0.00 3.41
1433 3357 6.371809 AAATTGTGTGTGTACAGTCGATTT 57.628 33.333 0.00 2.88 37.52 2.17
1500 3424 0.618458 TTTCTGGCTGCTTATCGGGT 59.382 50.000 0.00 0.00 0.00 5.28
1503 3427 2.016393 CTGGCTGCTTATCGGGTCGA 62.016 60.000 0.00 0.00 41.13 4.20
1505 3429 0.601558 GGCTGCTTATCGGGTCGATA 59.398 55.000 5.99 5.99 45.13 2.92
1506 3430 1.204941 GGCTGCTTATCGGGTCGATAT 59.795 52.381 10.25 0.00 46.03 1.63
1544 3468 5.163426 TGTGTTCAGCATGGTTTCAATCTTT 60.163 36.000 0.00 0.00 36.16 2.52
1547 3471 6.489700 TGTTCAGCATGGTTTCAATCTTTAGA 59.510 34.615 0.00 0.00 36.16 2.10
1573 3497 3.873801 GCAGACTCCCCTTTTGCAAGATA 60.874 47.826 0.00 0.00 34.99 1.98
1614 3538 1.720781 ATGCAGCCTCCCTTTGTTTT 58.279 45.000 0.00 0.00 0.00 2.43
1615 3539 1.494960 TGCAGCCTCCCTTTGTTTTT 58.505 45.000 0.00 0.00 0.00 1.94
1653 3577 6.656632 TGGTAGAGAGACAGCCAATATTAG 57.343 41.667 0.00 0.00 0.00 1.73
1663 3587 7.775120 AGACAGCCAATATTAGGTGAATTTTG 58.225 34.615 18.01 0.00 36.66 2.44
1675 3599 6.380079 AGGTGAATTTTGGTAGAGAGACAT 57.620 37.500 0.00 0.00 0.00 3.06
1676 3600 6.176183 AGGTGAATTTTGGTAGAGAGACATG 58.824 40.000 0.00 0.00 0.00 3.21
1680 3604 8.035394 GTGAATTTTGGTAGAGAGACATGTAGA 58.965 37.037 0.00 0.00 0.00 2.59
1681 3605 8.253810 TGAATTTTGGTAGAGAGACATGTAGAG 58.746 37.037 0.00 0.00 0.00 2.43
1693 3617 8.354711 AGAGACATGTAGAGTTATGTGAGAAA 57.645 34.615 0.00 0.00 37.63 2.52
1694 3618 8.976353 AGAGACATGTAGAGTTATGTGAGAAAT 58.024 33.333 0.00 0.00 37.63 2.17
1726 3650 2.644992 GCTTTGGCCGAGTGGTTG 59.355 61.111 0.00 0.00 37.67 3.77
1818 3744 9.825972 TTTTTCTCTATTTTGCTAAATCTGTCG 57.174 29.630 9.43 2.40 35.61 4.35
1819 3745 6.589830 TCTCTATTTTGCTAAATCTGTCGC 57.410 37.500 9.43 0.00 35.61 5.19
1820 3746 6.106003 TCTCTATTTTGCTAAATCTGTCGCA 58.894 36.000 9.43 0.00 35.61 5.10
1821 3747 6.763135 TCTCTATTTTGCTAAATCTGTCGCAT 59.237 34.615 9.43 0.00 35.61 4.73
1822 3748 6.718388 TCTATTTTGCTAAATCTGTCGCATG 58.282 36.000 9.43 0.00 35.61 4.06
1823 3749 5.565592 ATTTTGCTAAATCTGTCGCATGA 57.434 34.783 0.00 0.00 31.77 3.07
1824 3750 5.565592 TTTTGCTAAATCTGTCGCATGAT 57.434 34.783 0.00 0.00 31.77 2.45
1825 3751 5.565592 TTTGCTAAATCTGTCGCATGATT 57.434 34.783 0.00 0.00 34.75 2.57
1826 3752 5.565592 TTGCTAAATCTGTCGCATGATTT 57.434 34.783 0.00 11.75 42.98 2.17
1827 3753 6.676237 TTGCTAAATCTGTCGCATGATTTA 57.324 33.333 0.00 12.44 41.40 1.40
1828 3754 6.866010 TGCTAAATCTGTCGCATGATTTAT 57.134 33.333 0.00 0.00 41.40 1.40
1829 3755 6.891624 TGCTAAATCTGTCGCATGATTTATC 58.108 36.000 0.00 10.92 41.40 1.75
1830 3756 6.482973 TGCTAAATCTGTCGCATGATTTATCA 59.517 34.615 0.00 12.52 41.40 2.15
1831 3757 7.014115 GCTAAATCTGTCGCATGATTTATCAG 58.986 38.462 0.00 0.00 41.40 2.90
1832 3758 7.095481 GCTAAATCTGTCGCATGATTTATCAGA 60.095 37.037 0.00 1.65 41.40 3.27
1833 3759 7.558161 AAATCTGTCGCATGATTTATCAGAA 57.442 32.000 0.00 0.00 40.00 3.02
1834 3760 5.973651 TCTGTCGCATGATTTATCAGAAC 57.026 39.130 0.00 0.00 40.64 3.01
1835 3761 4.504097 TCTGTCGCATGATTTATCAGAACG 59.496 41.667 0.00 2.83 40.64 3.95
1836 3762 4.429108 TGTCGCATGATTTATCAGAACGA 58.571 39.130 0.00 9.19 40.64 3.85
1837 3763 4.867608 TGTCGCATGATTTATCAGAACGAA 59.132 37.500 12.86 5.24 40.64 3.85
1838 3764 5.005682 TGTCGCATGATTTATCAGAACGAAG 59.994 40.000 12.86 0.00 40.64 3.79
1839 3765 5.232202 GTCGCATGATTTATCAGAACGAAGA 59.768 40.000 12.86 0.00 40.64 2.87
1840 3766 5.985530 TCGCATGATTTATCAGAACGAAGAT 59.014 36.000 0.00 0.00 40.64 2.40
1841 3767 7.114953 GTCGCATGATTTATCAGAACGAAGATA 59.885 37.037 12.86 0.00 40.64 1.98
1842 3768 7.327032 TCGCATGATTTATCAGAACGAAGATAG 59.673 37.037 0.00 0.00 40.64 2.08
1843 3769 7.115520 CGCATGATTTATCAGAACGAAGATAGT 59.884 37.037 0.00 0.00 40.64 2.12
1844 3770 9.411801 GCATGATTTATCAGAACGAAGATAGTA 57.588 33.333 0.00 0.00 40.64 1.82
1876 3802 7.475771 TGATTAAAAAGTTGCAACATGAACC 57.524 32.000 30.11 8.24 0.00 3.62
1877 3803 5.957910 TTAAAAAGTTGCAACATGAACCG 57.042 34.783 30.11 0.00 0.00 4.44
1878 3804 2.507339 AAAGTTGCAACATGAACCGG 57.493 45.000 30.11 0.00 0.00 5.28
1879 3805 1.398692 AAGTTGCAACATGAACCGGT 58.601 45.000 30.11 0.00 0.00 5.28
1880 3806 2.264005 AGTTGCAACATGAACCGGTA 57.736 45.000 30.11 0.00 0.00 4.02
1881 3807 2.790433 AGTTGCAACATGAACCGGTAT 58.210 42.857 30.11 0.00 0.00 2.73
1882 3808 3.945346 AGTTGCAACATGAACCGGTATA 58.055 40.909 30.11 0.00 0.00 1.47
1883 3809 4.523083 AGTTGCAACATGAACCGGTATAT 58.477 39.130 30.11 1.87 0.00 0.86
1884 3810 5.676552 AGTTGCAACATGAACCGGTATATA 58.323 37.500 30.11 0.00 0.00 0.86
1885 3811 6.296026 AGTTGCAACATGAACCGGTATATAT 58.704 36.000 30.11 1.25 0.00 0.86
1886 3812 6.204688 AGTTGCAACATGAACCGGTATATATG 59.795 38.462 30.11 12.73 0.00 1.78
1887 3813 5.616270 TGCAACATGAACCGGTATATATGT 58.384 37.500 8.00 13.40 0.00 2.29
1888 3814 5.468409 TGCAACATGAACCGGTATATATGTG 59.532 40.000 19.89 15.85 0.00 3.21
1889 3815 5.616866 GCAACATGAACCGGTATATATGTGC 60.617 44.000 19.89 19.43 0.00 4.57
1890 3816 5.222079 ACATGAACCGGTATATATGTGCA 57.778 39.130 8.00 0.00 0.00 4.57
1891 3817 5.804639 ACATGAACCGGTATATATGTGCAT 58.195 37.500 8.00 0.00 0.00 3.96
1892 3818 5.643348 ACATGAACCGGTATATATGTGCATG 59.357 40.000 8.00 19.51 46.00 4.06
1893 3819 5.476091 TGAACCGGTATATATGTGCATGA 57.524 39.130 8.00 0.00 0.00 3.07
1894 3820 6.048732 TGAACCGGTATATATGTGCATGAT 57.951 37.500 8.00 0.00 0.00 2.45
1895 3821 6.472016 TGAACCGGTATATATGTGCATGATT 58.528 36.000 8.00 0.00 0.00 2.57
1896 3822 6.939730 TGAACCGGTATATATGTGCATGATTT 59.060 34.615 8.00 0.00 0.00 2.17
1897 3823 7.446931 TGAACCGGTATATATGTGCATGATTTT 59.553 33.333 8.00 0.00 0.00 1.82
1898 3824 7.759489 ACCGGTATATATGTGCATGATTTTT 57.241 32.000 4.49 0.00 0.00 1.94
1934 3860 7.708998 TCCAACTTGTTTTCACTAATTACACC 58.291 34.615 0.00 0.00 0.00 4.16
1935 3861 7.339721 TCCAACTTGTTTTCACTAATTACACCA 59.660 33.333 0.00 0.00 0.00 4.17
1936 3862 7.647715 CCAACTTGTTTTCACTAATTACACCAG 59.352 37.037 0.00 0.00 0.00 4.00
1937 3863 8.402472 CAACTTGTTTTCACTAATTACACCAGA 58.598 33.333 0.00 0.00 0.00 3.86
1938 3864 7.927048 ACTTGTTTTCACTAATTACACCAGAC 58.073 34.615 0.00 0.00 0.00 3.51
1939 3865 7.554835 ACTTGTTTTCACTAATTACACCAGACA 59.445 33.333 0.00 0.00 0.00 3.41
1940 3866 8.458573 TTGTTTTCACTAATTACACCAGACAT 57.541 30.769 0.00 0.00 0.00 3.06
1941 3867 9.562408 TTGTTTTCACTAATTACACCAGACATA 57.438 29.630 0.00 0.00 0.00 2.29
1942 3868 9.733556 TGTTTTCACTAATTACACCAGACATAT 57.266 29.630 0.00 0.00 0.00 1.78
1954 3880 9.908152 TTACACCAGACATATTCTATATTGTCG 57.092 33.333 0.00 0.00 42.51 4.35
1955 3881 6.868864 ACACCAGACATATTCTATATTGTCGC 59.131 38.462 0.00 0.00 42.51 5.19
1956 3882 6.868339 CACCAGACATATTCTATATTGTCGCA 59.132 38.462 0.00 0.00 42.51 5.10
1957 3883 6.868864 ACCAGACATATTCTATATTGTCGCAC 59.131 38.462 0.00 0.00 42.51 5.34
1958 3884 6.868339 CCAGACATATTCTATATTGTCGCACA 59.132 38.462 0.00 0.00 42.51 4.57
1959 3885 7.062722 CCAGACATATTCTATATTGTCGCACAG 59.937 40.741 0.00 0.00 42.51 3.66
1960 3886 6.587990 AGACATATTCTATATTGTCGCACAGC 59.412 38.462 0.00 0.00 42.51 4.40
1961 3887 6.459066 ACATATTCTATATTGTCGCACAGCT 58.541 36.000 0.00 0.00 0.00 4.24
1962 3888 7.602753 ACATATTCTATATTGTCGCACAGCTA 58.397 34.615 0.00 0.00 0.00 3.32
1963 3889 8.088365 ACATATTCTATATTGTCGCACAGCTAA 58.912 33.333 0.00 0.00 0.00 3.09
1964 3890 8.925700 CATATTCTATATTGTCGCACAGCTAAA 58.074 33.333 0.00 0.00 0.00 1.85
1965 3891 7.969536 ATTCTATATTGTCGCACAGCTAAAT 57.030 32.000 0.00 0.00 0.00 1.40
1966 3892 7.408132 TTCTATATTGTCGCACAGCTAAATC 57.592 36.000 0.00 0.00 0.00 2.17
1967 3893 6.749139 TCTATATTGTCGCACAGCTAAATCT 58.251 36.000 0.00 0.00 0.00 2.40
1968 3894 5.663795 ATATTGTCGCACAGCTAAATCTG 57.336 39.130 0.00 0.00 39.86 2.90
1970 3896 2.337583 TGTCGCACAGCTAAATCTGTC 58.662 47.619 0.00 0.00 44.81 3.51
1971 3897 1.321743 GTCGCACAGCTAAATCTGTCG 59.678 52.381 0.00 0.00 44.81 4.35
1972 3898 0.025513 CGCACAGCTAAATCTGTCGC 59.974 55.000 0.00 0.00 44.81 5.19
1973 3899 1.078709 GCACAGCTAAATCTGTCGCA 58.921 50.000 0.00 0.00 44.81 5.10
1974 3900 1.667724 GCACAGCTAAATCTGTCGCAT 59.332 47.619 0.00 0.00 44.81 4.73
1975 3901 2.538333 GCACAGCTAAATCTGTCGCATG 60.538 50.000 0.00 0.00 44.81 4.06
1976 3902 2.931969 CACAGCTAAATCTGTCGCATGA 59.068 45.455 0.00 0.00 44.81 3.07
1977 3903 3.558829 CACAGCTAAATCTGTCGCATGAT 59.441 43.478 0.00 0.00 44.81 2.45
1978 3904 4.034858 CACAGCTAAATCTGTCGCATGATT 59.965 41.667 0.00 0.00 44.81 2.57
1979 3905 4.637534 ACAGCTAAATCTGTCGCATGATTT 59.362 37.500 0.00 11.75 43.28 2.17
1980 3906 5.817296 ACAGCTAAATCTGTCGCATGATTTA 59.183 36.000 0.00 12.44 43.28 1.40
1981 3907 6.484643 ACAGCTAAATCTGTCGCATGATTTAT 59.515 34.615 0.00 2.78 43.28 1.40
1982 3908 7.014115 CAGCTAAATCTGTCGCATGATTTATC 58.986 38.462 0.00 10.61 41.40 1.75
1983 3909 6.707608 AGCTAAATCTGTCGCATGATTTATCA 59.292 34.615 0.00 0.00 41.40 2.15
1984 3910 7.014115 GCTAAATCTGTCGCATGATTTATCAG 58.986 38.462 0.00 0.00 41.40 2.90
1985 3911 7.095481 GCTAAATCTGTCGCATGATTTATCAGA 60.095 37.037 0.00 1.65 41.40 3.27
1986 3912 7.558161 AAATCTGTCGCATGATTTATCAGAA 57.442 32.000 0.00 0.00 40.00 3.02
1987 3913 5.973651 TCTGTCGCATGATTTATCAGAAC 57.026 39.130 0.00 0.00 40.64 3.01
1988 3914 4.504097 TCTGTCGCATGATTTATCAGAACG 59.496 41.667 0.00 2.83 40.64 3.95
1989 3915 4.429108 TGTCGCATGATTTATCAGAACGA 58.571 39.130 0.00 9.19 40.64 3.85
1990 3916 4.867608 TGTCGCATGATTTATCAGAACGAA 59.132 37.500 12.86 5.24 40.64 3.85
1991 3917 5.005682 TGTCGCATGATTTATCAGAACGAAG 59.994 40.000 12.86 0.00 40.64 3.79
1992 3918 5.232202 GTCGCATGATTTATCAGAACGAAGA 59.768 40.000 12.86 0.00 40.64 2.87
1993 3919 5.985530 TCGCATGATTTATCAGAACGAAGAT 59.014 36.000 0.00 0.00 40.64 2.40
1994 3920 7.114953 GTCGCATGATTTATCAGAACGAAGATA 59.885 37.037 12.86 0.00 40.64 1.98
1995 3921 7.327032 TCGCATGATTTATCAGAACGAAGATAG 59.673 37.037 0.00 0.00 40.64 2.08
1996 3922 7.115520 CGCATGATTTATCAGAACGAAGATAGT 59.884 37.037 0.00 0.00 40.64 2.12
1997 3923 9.411801 GCATGATTTATCAGAACGAAGATAGTA 57.588 33.333 0.00 0.00 40.64 1.82
2029 3955 7.475771 TGATTAAAAAGTTGCAACATGAACC 57.524 32.000 30.11 8.24 0.00 3.62
2030 3956 5.957910 TTAAAAAGTTGCAACATGAACCG 57.042 34.783 30.11 0.00 0.00 4.44
2031 3957 2.507339 AAAGTTGCAACATGAACCGG 57.493 45.000 30.11 0.00 0.00 5.28
2032 3958 1.398692 AAGTTGCAACATGAACCGGT 58.601 45.000 30.11 0.00 0.00 5.28
2033 3959 2.264005 AGTTGCAACATGAACCGGTA 57.736 45.000 30.11 0.00 0.00 4.02
2034 3960 2.790433 AGTTGCAACATGAACCGGTAT 58.210 42.857 30.11 0.00 0.00 2.73
2035 3961 3.945346 AGTTGCAACATGAACCGGTATA 58.055 40.909 30.11 0.00 0.00 1.47
2036 3962 4.523083 AGTTGCAACATGAACCGGTATAT 58.477 39.130 30.11 1.87 0.00 0.86
2037 3963 5.676552 AGTTGCAACATGAACCGGTATATA 58.323 37.500 30.11 0.00 0.00 0.86
2038 3964 6.296026 AGTTGCAACATGAACCGGTATATAT 58.704 36.000 30.11 1.25 0.00 0.86
2039 3965 6.204688 AGTTGCAACATGAACCGGTATATATG 59.795 38.462 30.11 12.73 0.00 1.78
2040 3966 5.616270 TGCAACATGAACCGGTATATATGT 58.384 37.500 8.00 13.40 0.00 2.29
2041 3967 5.468409 TGCAACATGAACCGGTATATATGTG 59.532 40.000 19.89 15.85 0.00 3.21
2042 3968 5.616866 GCAACATGAACCGGTATATATGTGC 60.617 44.000 19.89 19.43 0.00 4.57
2043 3969 5.222079 ACATGAACCGGTATATATGTGCA 57.778 39.130 8.00 0.00 0.00 4.57
2044 3970 5.804639 ACATGAACCGGTATATATGTGCAT 58.195 37.500 8.00 0.00 0.00 3.96
2045 3971 5.643348 ACATGAACCGGTATATATGTGCATG 59.357 40.000 8.00 19.51 46.00 4.06
2046 3972 5.476091 TGAACCGGTATATATGTGCATGA 57.524 39.130 8.00 0.00 0.00 3.07
2047 3973 6.048732 TGAACCGGTATATATGTGCATGAT 57.951 37.500 8.00 0.00 0.00 2.45
2048 3974 6.472016 TGAACCGGTATATATGTGCATGATT 58.528 36.000 8.00 0.00 0.00 2.57
2049 3975 6.939730 TGAACCGGTATATATGTGCATGATTT 59.060 34.615 8.00 0.00 0.00 2.17
2050 3976 7.446931 TGAACCGGTATATATGTGCATGATTTT 59.553 33.333 8.00 0.00 0.00 1.82
2051 3977 7.759489 ACCGGTATATATGTGCATGATTTTT 57.241 32.000 4.49 0.00 0.00 1.94
2078 4004 5.709966 GGAAATATCCAACTTGTTTTCGCT 58.290 37.500 0.00 0.00 45.79 4.93
2079 4005 6.848451 GGAAATATCCAACTTGTTTTCGCTA 58.152 36.000 0.00 0.00 45.79 4.26
2080 4006 7.309920 GGAAATATCCAACTTGTTTTCGCTAA 58.690 34.615 0.00 0.00 45.79 3.09
2081 4007 7.973944 GGAAATATCCAACTTGTTTTCGCTAAT 59.026 33.333 0.00 0.00 45.79 1.73
2082 4008 9.353999 GAAATATCCAACTTGTTTTCGCTAATT 57.646 29.630 0.00 0.00 0.00 1.40
2084 4010 9.783256 AATATCCAACTTGTTTTCGCTAATTAC 57.217 29.630 0.00 0.00 0.00 1.89
2085 4011 6.621316 TCCAACTTGTTTTCGCTAATTACA 57.379 33.333 0.00 0.00 0.00 2.41
2086 4012 6.432107 TCCAACTTGTTTTCGCTAATTACAC 58.568 36.000 0.00 0.00 0.00 2.90
2087 4013 5.627780 CCAACTTGTTTTCGCTAATTACACC 59.372 40.000 0.00 0.00 0.00 4.16
2088 4014 6.202937 CAACTTGTTTTCGCTAATTACACCA 58.797 36.000 0.00 0.00 0.00 4.17
2089 4015 5.997385 ACTTGTTTTCGCTAATTACACCAG 58.003 37.500 0.00 0.00 0.00 4.00
2090 4016 5.761234 ACTTGTTTTCGCTAATTACACCAGA 59.239 36.000 0.00 0.00 0.00 3.86
2091 4017 5.600908 TGTTTTCGCTAATTACACCAGAC 57.399 39.130 0.00 0.00 0.00 3.51
2092 4018 5.057819 TGTTTTCGCTAATTACACCAGACA 58.942 37.500 0.00 0.00 0.00 3.41
2093 4019 5.703592 TGTTTTCGCTAATTACACCAGACAT 59.296 36.000 0.00 0.00 0.00 3.06
2094 4020 6.874664 TGTTTTCGCTAATTACACCAGACATA 59.125 34.615 0.00 0.00 0.00 2.29
2095 4021 7.551262 TGTTTTCGCTAATTACACCAGACATAT 59.449 33.333 0.00 0.00 0.00 1.78
2096 4022 8.395633 GTTTTCGCTAATTACACCAGACATATT 58.604 33.333 0.00 0.00 0.00 1.28
2097 4023 7.709269 TTCGCTAATTACACCAGACATATTC 57.291 36.000 0.00 0.00 0.00 1.75
2098 4024 7.050970 TCGCTAATTACACCAGACATATTCT 57.949 36.000 0.00 0.00 33.33 2.40
2099 4025 8.173542 TCGCTAATTACACCAGACATATTCTA 57.826 34.615 0.00 0.00 31.12 2.10
2100 4026 8.803235 TCGCTAATTACACCAGACATATTCTAT 58.197 33.333 0.00 0.00 31.12 1.98
2107 4033 9.908152 TTACACCAGACATATTCTATATTGTCG 57.092 33.333 0.00 0.00 42.51 4.35
2108 4034 6.868864 ACACCAGACATATTCTATATTGTCGC 59.131 38.462 0.00 0.00 42.51 5.19
2109 4035 6.868339 CACCAGACATATTCTATATTGTCGCA 59.132 38.462 0.00 0.00 42.51 5.10
2110 4036 6.868864 ACCAGACATATTCTATATTGTCGCAC 59.131 38.462 0.00 0.00 42.51 5.34
2111 4037 6.868339 CCAGACATATTCTATATTGTCGCACA 59.132 38.462 0.00 0.00 42.51 4.57
2112 4038 7.062722 CCAGACATATTCTATATTGTCGCACAG 59.937 40.741 0.00 0.00 42.51 3.66
2113 4039 6.587990 AGACATATTCTATATTGTCGCACAGC 59.412 38.462 0.00 0.00 42.51 4.40
2114 4040 6.459066 ACATATTCTATATTGTCGCACAGCT 58.541 36.000 0.00 0.00 0.00 4.24
2115 4041 7.602753 ACATATTCTATATTGTCGCACAGCTA 58.397 34.615 0.00 0.00 0.00 3.32
2116 4042 8.088365 ACATATTCTATATTGTCGCACAGCTAA 58.912 33.333 0.00 0.00 0.00 3.09
2117 4043 8.925700 CATATTCTATATTGTCGCACAGCTAAA 58.074 33.333 0.00 0.00 0.00 1.85
2118 4044 7.969536 ATTCTATATTGTCGCACAGCTAAAT 57.030 32.000 0.00 0.00 0.00 1.40
2119 4045 7.786178 TTCTATATTGTCGCACAGCTAAATT 57.214 32.000 0.00 0.00 0.00 1.82
2120 4046 7.786178 TCTATATTGTCGCACAGCTAAATTT 57.214 32.000 0.00 0.00 0.00 1.82
2121 4047 7.630026 TCTATATTGTCGCACAGCTAAATTTG 58.370 34.615 0.00 0.00 0.00 2.32
2122 4048 3.980646 TTGTCGCACAGCTAAATTTGT 57.019 38.095 0.00 0.00 0.00 2.83
2123 4049 5.621197 ATTGTCGCACAGCTAAATTTGTA 57.379 34.783 0.00 0.00 0.00 2.41
2124 4050 4.661993 TGTCGCACAGCTAAATTTGTAG 57.338 40.909 0.00 0.00 0.00 2.74
2125 4051 3.120338 TGTCGCACAGCTAAATTTGTAGC 60.120 43.478 0.00 2.70 45.77 3.58
2138 4064 9.403110 GCTAAATTTGTAGCATGATTTATCAGG 57.597 33.333 7.88 0.26 44.94 3.86
2141 4067 7.756395 ATTTGTAGCATGATTTATCAGGAGG 57.244 36.000 8.44 0.00 40.76 4.30
2142 4068 6.499106 TTGTAGCATGATTTATCAGGAGGA 57.501 37.500 8.44 0.00 40.76 3.71
2143 4069 6.499106 TGTAGCATGATTTATCAGGAGGAA 57.501 37.500 8.44 0.00 40.76 3.36
2144 4070 6.899089 TGTAGCATGATTTATCAGGAGGAAA 58.101 36.000 8.44 0.00 40.76 3.13
2145 4071 7.345691 TGTAGCATGATTTATCAGGAGGAAAA 58.654 34.615 8.44 0.00 40.76 2.29
2146 4072 8.000709 TGTAGCATGATTTATCAGGAGGAAAAT 58.999 33.333 8.44 0.00 40.76 1.82
2147 4073 9.507329 GTAGCATGATTTATCAGGAGGAAAATA 57.493 33.333 8.44 0.00 40.76 1.40
2148 4074 8.632906 AGCATGATTTATCAGGAGGAAAATAG 57.367 34.615 8.44 0.00 40.76 1.73
2149 4075 8.223330 AGCATGATTTATCAGGAGGAAAATAGT 58.777 33.333 8.44 0.00 40.76 2.12
2150 4076 9.507329 GCATGATTTATCAGGAGGAAAATAGTA 57.493 33.333 8.44 0.00 40.76 1.82
2179 4105 9.656040 AATAATGATTAAAAAGTTGCAGCATGA 57.344 25.926 2.55 0.00 39.69 3.07
2180 4106 7.966246 AATGATTAAAAAGTTGCAGCATGAA 57.034 28.000 2.55 0.00 39.69 2.57
2181 4107 6.768029 TGATTAAAAAGTTGCAGCATGAAC 57.232 33.333 2.55 0.00 39.69 3.18
2182 4108 5.695816 TGATTAAAAAGTTGCAGCATGAACC 59.304 36.000 2.55 0.00 39.69 3.62
2183 4109 2.138596 AAAAGTTGCAGCATGAACCG 57.861 45.000 2.55 0.00 39.69 4.44
2184 4110 0.314935 AAAGTTGCAGCATGAACCGG 59.685 50.000 0.00 0.00 39.69 5.28
2185 4111 0.823356 AAGTTGCAGCATGAACCGGT 60.823 50.000 0.00 0.00 39.69 5.28
2186 4112 0.036164 AGTTGCAGCATGAACCGGTA 59.964 50.000 8.00 0.00 39.69 4.02
2187 4113 1.094785 GTTGCAGCATGAACCGGTAT 58.905 50.000 8.00 0.00 39.69 2.73
2188 4114 2.093181 AGTTGCAGCATGAACCGGTATA 60.093 45.455 8.00 0.00 39.69 1.47
2189 4115 2.878406 GTTGCAGCATGAACCGGTATAT 59.122 45.455 8.00 1.87 39.69 0.86
2190 4116 4.062293 GTTGCAGCATGAACCGGTATATA 58.938 43.478 8.00 0.00 39.69 0.86
2191 4117 4.551702 TGCAGCATGAACCGGTATATAT 57.448 40.909 8.00 0.00 39.69 0.86
2192 4118 4.252878 TGCAGCATGAACCGGTATATATG 58.747 43.478 8.00 11.47 39.69 1.78
2193 4119 4.253685 GCAGCATGAACCGGTATATATGT 58.746 43.478 8.00 0.00 39.69 2.29
2194 4120 4.093408 GCAGCATGAACCGGTATATATGTG 59.907 45.833 8.00 11.52 39.69 3.21
2195 4121 4.093408 CAGCATGAACCGGTATATATGTGC 59.907 45.833 8.00 11.88 39.69 4.57
2196 4122 4.000325 GCATGAACCGGTATATATGTGCA 59.000 43.478 8.00 0.00 0.00 4.57
2197 4123 4.635765 GCATGAACCGGTATATATGTGCAT 59.364 41.667 8.00 0.00 0.00 3.96
2198 4124 5.447683 GCATGAACCGGTATATATGTGCATG 60.448 44.000 8.00 18.09 44.26 4.06
2199 4125 5.476091 TGAACCGGTATATATGTGCATGA 57.524 39.130 8.00 0.00 0.00 3.07
2200 4126 6.048732 TGAACCGGTATATATGTGCATGAT 57.951 37.500 8.00 0.00 0.00 2.45
2201 4127 6.472016 TGAACCGGTATATATGTGCATGATT 58.528 36.000 8.00 0.00 0.00 2.57
2202 4128 6.939730 TGAACCGGTATATATGTGCATGATTT 59.060 34.615 8.00 0.00 0.00 2.17
2203 4129 7.446931 TGAACCGGTATATATGTGCATGATTTT 59.553 33.333 8.00 0.00 0.00 1.82
2204 4130 7.759489 ACCGGTATATATGTGCATGATTTTT 57.241 32.000 4.49 0.00 0.00 1.94
2222 4148 3.828875 TTTTTGGGGATTTTCGCAACT 57.171 38.095 0.00 0.00 38.90 3.16
2223 4149 3.828875 TTTTGGGGATTTTCGCAACTT 57.171 38.095 0.00 0.00 38.90 2.66
2224 4150 4.939052 TTTTGGGGATTTTCGCAACTTA 57.061 36.364 0.00 0.00 38.90 2.24
2225 4151 4.939052 TTTGGGGATTTTCGCAACTTAA 57.061 36.364 0.00 0.00 38.90 1.85
2226 4152 4.939052 TTGGGGATTTTCGCAACTTAAA 57.061 36.364 0.00 0.00 35.20 1.52
2227 4153 4.513198 TGGGGATTTTCGCAACTTAAAG 57.487 40.909 0.00 0.00 0.00 1.85
2228 4154 4.145807 TGGGGATTTTCGCAACTTAAAGA 58.854 39.130 0.00 0.00 0.00 2.52
2229 4155 4.770010 TGGGGATTTTCGCAACTTAAAGAT 59.230 37.500 0.00 0.00 0.00 2.40
2230 4156 5.105917 TGGGGATTTTCGCAACTTAAAGATC 60.106 40.000 0.00 0.00 0.00 2.75
2231 4157 5.340803 GGGATTTTCGCAACTTAAAGATCC 58.659 41.667 0.00 0.00 0.00 3.36
2232 4158 5.105917 GGGATTTTCGCAACTTAAAGATCCA 60.106 40.000 0.00 0.00 0.00 3.41
2233 4159 6.386654 GGATTTTCGCAACTTAAAGATCCAA 58.613 36.000 0.00 0.00 0.00 3.53
2234 4160 6.308041 GGATTTTCGCAACTTAAAGATCCAAC 59.692 38.462 0.00 0.00 0.00 3.77
2235 4161 6.385649 TTTTCGCAACTTAAAGATCCAACT 57.614 33.333 0.00 0.00 0.00 3.16
2236 4162 6.385649 TTTCGCAACTTAAAGATCCAACTT 57.614 33.333 0.00 0.00 0.00 2.66
2237 4163 6.385649 TTCGCAACTTAAAGATCCAACTTT 57.614 33.333 0.00 0.00 41.90 2.66
2238 4164 6.385649 TCGCAACTTAAAGATCCAACTTTT 57.614 33.333 0.00 0.00 40.09 2.27
2239 4165 6.801575 TCGCAACTTAAAGATCCAACTTTTT 58.198 32.000 0.00 0.00 40.09 1.94
2258 4184 5.545658 TTTTTCGCTGATTACACCTGATC 57.454 39.130 0.00 0.00 0.00 2.92
2259 4185 4.471904 TTTCGCTGATTACACCTGATCT 57.528 40.909 0.00 0.00 0.00 2.75
2260 4186 5.592104 TTTCGCTGATTACACCTGATCTA 57.408 39.130 0.00 0.00 0.00 1.98
2261 4187 5.791336 TTCGCTGATTACACCTGATCTAT 57.209 39.130 0.00 0.00 0.00 1.98
2262 4188 5.791336 TCGCTGATTACACCTGATCTATT 57.209 39.130 0.00 0.00 0.00 1.73
2263 4189 5.773575 TCGCTGATTACACCTGATCTATTC 58.226 41.667 0.00 0.00 0.00 1.75
2264 4190 5.536538 TCGCTGATTACACCTGATCTATTCT 59.463 40.000 0.00 0.00 0.00 2.40
2265 4191 6.715264 TCGCTGATTACACCTGATCTATTCTA 59.285 38.462 0.00 0.00 0.00 2.10
2266 4192 7.394641 TCGCTGATTACACCTGATCTATTCTAT 59.605 37.037 0.00 0.00 0.00 1.98
2267 4193 8.678199 CGCTGATTACACCTGATCTATTCTATA 58.322 37.037 0.00 0.00 0.00 1.31
2274 4200 7.316640 ACACCTGATCTATTCTATATTGTCGC 58.683 38.462 0.00 0.00 0.00 5.19
2275 4201 7.039714 ACACCTGATCTATTCTATATTGTCGCA 60.040 37.037 0.00 0.00 0.00 5.10
2276 4202 7.274468 CACCTGATCTATTCTATATTGTCGCAC 59.726 40.741 0.00 0.00 0.00 5.34
2277 4203 7.039714 ACCTGATCTATTCTATATTGTCGCACA 60.040 37.037 0.00 0.00 0.00 4.57
2278 4204 7.814587 CCTGATCTATTCTATATTGTCGCACAA 59.185 37.037 4.56 4.56 42.95 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.954202 ACCAAGTCGAGTAGGATTATGTGA 59.046 41.667 0.00 0.00 0.00 3.58
1 2 5.263968 ACCAAGTCGAGTAGGATTATGTG 57.736 43.478 0.00 0.00 0.00 3.21
2 3 6.208994 GGATACCAAGTCGAGTAGGATTATGT 59.791 42.308 0.00 0.00 0.00 2.29
3 4 6.208797 TGGATACCAAGTCGAGTAGGATTATG 59.791 42.308 0.00 0.00 0.00 1.90
4 5 6.312529 TGGATACCAAGTCGAGTAGGATTAT 58.687 40.000 0.00 0.00 0.00 1.28
5 6 5.698104 TGGATACCAAGTCGAGTAGGATTA 58.302 41.667 0.00 0.00 0.00 1.75
6 7 4.543689 TGGATACCAAGTCGAGTAGGATT 58.456 43.478 0.00 0.00 0.00 3.01
7 8 4.180377 TGGATACCAAGTCGAGTAGGAT 57.820 45.455 0.00 0.00 0.00 3.24
8 9 3.657398 TGGATACCAAGTCGAGTAGGA 57.343 47.619 0.00 0.00 0.00 2.94
9 10 4.683832 CTTTGGATACCAAGTCGAGTAGG 58.316 47.826 0.00 0.00 44.84 3.18
10 11 4.113354 GCTTTGGATACCAAGTCGAGTAG 58.887 47.826 0.00 0.00 44.84 2.57
11 12 3.512329 TGCTTTGGATACCAAGTCGAGTA 59.488 43.478 0.00 0.00 44.84 2.59
12 13 2.301870 TGCTTTGGATACCAAGTCGAGT 59.698 45.455 3.49 0.00 44.84 4.18
13 14 2.972625 TGCTTTGGATACCAAGTCGAG 58.027 47.619 3.49 0.46 44.84 4.04
14 15 3.270027 CATGCTTTGGATACCAAGTCGA 58.730 45.455 3.49 0.00 44.84 4.20
15 16 3.009723 ACATGCTTTGGATACCAAGTCG 58.990 45.455 3.49 0.00 44.84 4.18
16 17 4.009675 TGACATGCTTTGGATACCAAGTC 58.990 43.478 10.70 10.70 44.84 3.01
17 18 4.032960 TGACATGCTTTGGATACCAAGT 57.967 40.909 3.49 0.00 44.84 3.16
18 19 5.105635 ACAATGACATGCTTTGGATACCAAG 60.106 40.000 15.16 0.81 44.84 3.61
19 20 4.771577 ACAATGACATGCTTTGGATACCAA 59.228 37.500 15.16 0.00 42.29 3.67
20 21 4.158209 CACAATGACATGCTTTGGATACCA 59.842 41.667 15.16 0.00 36.31 3.25
21 22 4.158394 ACACAATGACATGCTTTGGATACC 59.842 41.667 15.16 0.00 36.31 2.73
22 23 5.314923 ACACAATGACATGCTTTGGATAC 57.685 39.130 15.16 0.00 36.31 2.24
23 24 5.711506 AGAACACAATGACATGCTTTGGATA 59.288 36.000 15.16 0.00 36.31 2.59
24 25 4.525487 AGAACACAATGACATGCTTTGGAT 59.475 37.500 15.16 5.28 36.31 3.41
25 26 3.890756 AGAACACAATGACATGCTTTGGA 59.109 39.130 15.16 0.00 36.31 3.53
26 27 4.247267 AGAACACAATGACATGCTTTGG 57.753 40.909 15.16 9.53 36.31 3.28
62 64 8.498358 GGAGGCAAAATGAATTGTAAGAAAAAG 58.502 33.333 0.00 0.00 32.80 2.27
67 69 5.538053 TGTGGAGGCAAAATGAATTGTAAGA 59.462 36.000 0.00 0.00 32.80 2.10
68 70 5.782047 TGTGGAGGCAAAATGAATTGTAAG 58.218 37.500 0.00 0.00 32.80 2.34
91 100 1.298667 GGTAACACGGGTGAGGCAT 59.701 57.895 5.71 0.00 0.00 4.40
94 103 1.373748 CACGGTAACACGGGTGAGG 60.374 63.158 5.71 0.00 38.39 3.86
123 132 0.815734 CATTGCTTTGCCTCCTCAGG 59.184 55.000 0.00 0.00 43.82 3.86
153 162 4.025563 CGTGGTCAGTTTTTGTCAATCGTA 60.026 41.667 0.00 0.00 0.00 3.43
176 185 1.882167 GAGTCAGGCGATGCTGCTC 60.882 63.158 0.00 0.00 34.52 4.26
177 186 2.186384 GAGTCAGGCGATGCTGCT 59.814 61.111 0.00 0.00 34.52 4.24
178 187 2.894387 GGAGTCAGGCGATGCTGC 60.894 66.667 0.00 0.00 0.00 5.25
179 188 2.202987 GGGAGTCAGGCGATGCTG 60.203 66.667 0.00 0.00 0.00 4.41
180 189 3.842923 CGGGAGTCAGGCGATGCT 61.843 66.667 0.00 0.00 0.00 3.79
306 337 0.249120 TGCTCATCGATCGGTGGTTT 59.751 50.000 27.10 0.00 0.00 3.27
307 338 0.465705 ATGCTCATCGATCGGTGGTT 59.534 50.000 27.10 7.85 0.00 3.67
311 342 0.179076 TTGCATGCTCATCGATCGGT 60.179 50.000 20.33 4.70 0.00 4.69
313 344 2.571206 CAATTGCATGCTCATCGATCG 58.429 47.619 20.33 9.36 0.00 3.69
314 345 2.316792 GCAATTGCATGCTCATCGATC 58.683 47.619 25.36 0.00 43.06 3.69
315 346 2.417339 GCAATTGCATGCTCATCGAT 57.583 45.000 25.36 0.00 43.06 3.59
316 347 3.930400 GCAATTGCATGCTCATCGA 57.070 47.368 25.36 0.00 43.06 3.59
563 2451 0.403271 GTCATGGATAGCAGGGCCAT 59.597 55.000 6.18 0.00 42.91 4.40
574 2462 0.816825 GGCACGCATGAGTCATGGAT 60.817 55.000 29.66 11.21 41.64 3.41
575 2463 1.450134 GGCACGCATGAGTCATGGA 60.450 57.895 29.66 0.00 41.64 3.41
576 2464 1.746239 TGGCACGCATGAGTCATGG 60.746 57.895 29.66 22.20 41.64 3.66
616 2504 0.108329 TTTGGGAAGCGATCGTCTCC 60.108 55.000 22.30 22.30 0.00 3.71
644 2532 0.386985 GTGTCTGGACGAACGGTCTC 60.387 60.000 0.00 0.00 45.35 3.36
648 2536 1.372997 CCTGTGTCTGGACGAACGG 60.373 63.158 0.00 0.00 0.00 4.44
686 2576 0.800631 TCGCTCGTCATCGTGTACTT 59.199 50.000 0.00 0.00 38.33 2.24
711 2607 2.943265 AACCTCATGGCCTGCCCT 60.943 61.111 3.32 0.00 36.63 5.19
723 2619 2.859165 TGTTCCCACATCTGAACCTC 57.141 50.000 0.00 0.00 40.06 3.85
724 2620 3.593442 TTTGTTCCCACATCTGAACCT 57.407 42.857 0.00 0.00 40.06 3.50
741 2653 0.594796 GTGCAAGCCTCCACGTTTTG 60.595 55.000 0.00 0.00 0.00 2.44
805 2717 2.050077 GGCTTGCGTCAAGTTGCC 60.050 61.111 17.05 11.46 42.77 4.52
825 2737 1.550130 TATATAGGGCTGGCCGGCAC 61.550 60.000 36.64 34.79 40.61 5.01
835 2747 7.201496 CGATTGGTCGTTGTTTATATATAGGGC 60.201 40.741 0.00 0.00 42.78 5.19
870 2786 0.879765 AATGTGCTCTGCTTCTGTGC 59.120 50.000 0.00 0.00 0.00 4.57
911 2827 2.017783 GGCGCGTTCGAACTGTGTA 61.018 57.895 24.80 0.00 38.10 2.90
917 2833 4.419957 GAACCGGCGCGTTCGAAC 62.420 66.667 18.47 18.47 38.10 3.95
984 2900 2.224646 GCCCATTCCCTAAGAGGCTAAG 60.225 54.545 0.00 0.00 35.05 2.18
987 2903 0.624500 TGCCCATTCCCTAAGAGGCT 60.625 55.000 0.00 0.00 37.52 4.58
988 2904 0.258774 TTGCCCATTCCCTAAGAGGC 59.741 55.000 0.00 0.00 37.28 4.70
989 2905 1.747206 CGTTGCCCATTCCCTAAGAGG 60.747 57.143 0.00 0.00 34.30 3.69
990 2906 1.065418 ACGTTGCCCATTCCCTAAGAG 60.065 52.381 0.00 0.00 0.00 2.85
991 2907 0.988832 ACGTTGCCCATTCCCTAAGA 59.011 50.000 0.00 0.00 0.00 2.10
992 2908 1.094785 CACGTTGCCCATTCCCTAAG 58.905 55.000 0.00 0.00 0.00 2.18
993 2909 0.322997 CCACGTTGCCCATTCCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
994 2910 1.301623 CCACGTTGCCCATTCCCTA 59.698 57.895 0.00 0.00 0.00 3.53
995 2911 2.035626 CCACGTTGCCCATTCCCT 59.964 61.111 0.00 0.00 0.00 4.20
1276 3196 4.436998 GTCTGCCCTCCGGTCACG 62.437 72.222 0.00 0.00 40.55 4.35
1277 3197 1.668101 CTAGTCTGCCCTCCGGTCAC 61.668 65.000 0.00 0.00 0.00 3.67
1278 3198 1.379977 CTAGTCTGCCCTCCGGTCA 60.380 63.158 0.00 0.00 0.00 4.02
1285 3205 1.002544 GCACTTCAACTAGTCTGCCCT 59.997 52.381 0.00 0.00 0.00 5.19
1316 3238 2.089980 ACCGCTGACTCGTACATTAGT 58.910 47.619 0.00 0.00 0.00 2.24
1333 3255 0.865769 AACTAAGAAAGCACGCACCG 59.134 50.000 0.00 0.00 0.00 4.94
1355 3277 8.033038 AGAACAATCACTACAAACGATAGCTAA 58.967 33.333 0.00 0.00 42.67 3.09
1367 3289 8.974060 AACCTTTCTTAAGAACAATCACTACA 57.026 30.769 17.51 0.00 33.13 2.74
1412 3335 6.704493 AGTTAAATCGACTGTACACACACAAT 59.296 34.615 0.00 0.00 0.00 2.71
1428 3352 5.622448 CGAATGATCCATTGCAGTTAAATCG 59.378 40.000 0.00 0.00 33.90 3.34
1433 3357 6.698008 AAATCGAATGATCCATTGCAGTTA 57.302 33.333 0.00 0.00 33.90 2.24
1472 3396 0.964358 GCAGCCAGAAACAGGAGCAT 60.964 55.000 0.00 0.00 0.00 3.79
1477 3401 1.667724 CGATAAGCAGCCAGAAACAGG 59.332 52.381 0.00 0.00 0.00 4.00
1500 3424 6.280643 ACACAAAGCAACAGCTATATATCGA 58.719 36.000 0.00 0.00 37.72 3.59
1503 3427 7.467811 GCTGAACACAAAGCAACAGCTATATAT 60.468 37.037 0.00 0.00 44.51 0.86
1504 3428 6.183360 GCTGAACACAAAGCAACAGCTATATA 60.183 38.462 0.00 0.00 44.51 0.86
1505 3429 5.392380 GCTGAACACAAAGCAACAGCTATAT 60.392 40.000 0.00 0.00 44.51 0.86
1506 3430 4.083324 GCTGAACACAAAGCAACAGCTATA 60.083 41.667 0.00 0.00 44.51 1.31
1544 3468 2.344093 AAGGGGAGTCTGCCTTTCTA 57.656 50.000 10.60 0.00 0.00 2.10
1547 3471 2.001076 CAAAAGGGGAGTCTGCCTTT 57.999 50.000 10.60 6.11 34.50 3.11
1626 3550 4.431416 TTGGCTGTCTCTCTACCAAAAA 57.569 40.909 0.00 0.00 37.45 1.94
1627 3551 4.640771 ATTGGCTGTCTCTCTACCAAAA 57.359 40.909 0.00 0.00 43.21 2.44
1633 3557 6.373759 TCACCTAATATTGGCTGTCTCTCTA 58.626 40.000 0.00 0.00 0.00 2.43
1636 3560 5.957771 TTCACCTAATATTGGCTGTCTCT 57.042 39.130 0.00 0.00 0.00 3.10
1643 3567 8.232913 TCTACCAAAATTCACCTAATATTGGC 57.767 34.615 0.00 0.00 0.00 4.52
1653 3577 5.940470 ACATGTCTCTCTACCAAAATTCACC 59.060 40.000 0.00 0.00 0.00 4.02
1663 3587 7.499563 TCACATAACTCTACATGTCTCTCTACC 59.500 40.741 0.00 0.00 33.12 3.18
1675 3599 9.567776 TTGGAAAATTTCTCACATAACTCTACA 57.432 29.630 5.65 0.00 0.00 2.74
1680 3604 9.030301 CGTTTTTGGAAAATTTCTCACATAACT 57.970 29.630 5.65 0.00 0.00 2.24
1681 3605 9.026074 TCGTTTTTGGAAAATTTCTCACATAAC 57.974 29.630 5.65 5.80 0.00 1.89
1693 3617 4.770351 CAAAGCGTCGTTTTTGGAAAAT 57.230 36.364 4.16 0.00 32.13 1.82
1702 3626 2.589442 TCGGCCAAAGCGTCGTTT 60.589 55.556 2.24 0.00 41.24 3.60
1796 3722 6.106003 TGCGACAGATTTAGCAAAATAGAGA 58.894 36.000 0.00 0.00 35.41 3.10
1797 3723 6.349973 TGCGACAGATTTAGCAAAATAGAG 57.650 37.500 0.00 0.00 35.41 2.43
1798 3724 6.538381 TCATGCGACAGATTTAGCAAAATAGA 59.462 34.615 0.00 0.00 43.19 1.98
1813 3739 4.504097 TCGTTCTGATAAATCATGCGACAG 59.496 41.667 8.52 0.00 36.02 3.51
1814 3740 4.429108 TCGTTCTGATAAATCATGCGACA 58.571 39.130 8.52 0.00 36.02 4.35
1815 3741 5.232202 TCTTCGTTCTGATAAATCATGCGAC 59.768 40.000 10.82 1.58 35.51 5.19
1816 3742 5.348164 TCTTCGTTCTGATAAATCATGCGA 58.652 37.500 8.52 8.52 36.02 5.10
1817 3743 5.641777 TCTTCGTTCTGATAAATCATGCG 57.358 39.130 0.00 0.00 36.02 4.73
1818 3744 8.304202 ACTATCTTCGTTCTGATAAATCATGC 57.696 34.615 0.00 0.00 36.02 4.06
1850 3776 8.558700 GGTTCATGTTGCAACTTTTTAATCATT 58.441 29.630 28.61 0.00 0.00 2.57
1851 3777 7.095691 CGGTTCATGTTGCAACTTTTTAATCAT 60.096 33.333 28.61 9.14 0.00 2.45
1852 3778 6.199908 CGGTTCATGTTGCAACTTTTTAATCA 59.800 34.615 28.61 7.08 0.00 2.57
1853 3779 6.346518 CCGGTTCATGTTGCAACTTTTTAATC 60.347 38.462 28.61 15.21 0.00 1.75
1854 3780 5.465056 CCGGTTCATGTTGCAACTTTTTAAT 59.535 36.000 28.61 11.23 0.00 1.40
1855 3781 4.806247 CCGGTTCATGTTGCAACTTTTTAA 59.194 37.500 28.61 13.90 0.00 1.52
1856 3782 4.142138 ACCGGTTCATGTTGCAACTTTTTA 60.142 37.500 28.61 10.03 0.00 1.52
1857 3783 3.194062 CCGGTTCATGTTGCAACTTTTT 58.806 40.909 28.61 9.70 0.00 1.94
1858 3784 2.167487 ACCGGTTCATGTTGCAACTTTT 59.833 40.909 28.61 12.11 0.00 2.27
1859 3785 1.754226 ACCGGTTCATGTTGCAACTTT 59.246 42.857 28.61 14.56 0.00 2.66
1860 3786 1.398692 ACCGGTTCATGTTGCAACTT 58.601 45.000 28.61 20.54 0.00 2.66
1861 3787 2.264005 TACCGGTTCATGTTGCAACT 57.736 45.000 28.61 12.75 0.00 3.16
1862 3788 4.893424 ATATACCGGTTCATGTTGCAAC 57.107 40.909 22.83 22.83 0.00 4.17
1863 3789 6.017523 CACATATATACCGGTTCATGTTGCAA 60.018 38.462 15.04 0.00 0.00 4.08
1864 3790 5.468409 CACATATATACCGGTTCATGTTGCA 59.532 40.000 15.04 0.00 0.00 4.08
1865 3791 5.616866 GCACATATATACCGGTTCATGTTGC 60.617 44.000 15.04 17.08 0.00 4.17
1866 3792 5.468409 TGCACATATATACCGGTTCATGTTG 59.532 40.000 15.04 11.09 0.00 3.33
1867 3793 5.616270 TGCACATATATACCGGTTCATGTT 58.384 37.500 15.04 0.00 0.00 2.71
1868 3794 5.222079 TGCACATATATACCGGTTCATGT 57.778 39.130 15.04 14.30 0.00 3.21
1869 3795 5.874261 TCATGCACATATATACCGGTTCATG 59.126 40.000 15.04 13.64 36.61 3.07
1870 3796 6.048732 TCATGCACATATATACCGGTTCAT 57.951 37.500 15.04 9.30 0.00 2.57
1871 3797 5.476091 TCATGCACATATATACCGGTTCA 57.524 39.130 15.04 0.00 0.00 3.18
1872 3798 6.985188 AATCATGCACATATATACCGGTTC 57.015 37.500 15.04 0.00 0.00 3.62
1873 3799 7.759489 AAAATCATGCACATATATACCGGTT 57.241 32.000 15.04 3.05 0.00 4.44
1874 3800 7.759489 AAAAATCATGCACATATATACCGGT 57.241 32.000 13.98 13.98 0.00 5.28
1896 3822 9.114952 GAAAACAAGTTGGATATTTCCCAAAAA 57.885 29.630 7.96 0.00 44.41 1.94
1897 3823 8.267894 TGAAAACAAGTTGGATATTTCCCAAAA 58.732 29.630 7.96 0.00 44.41 2.44
1898 3824 7.713073 GTGAAAACAAGTTGGATATTTCCCAAA 59.287 33.333 7.96 0.00 44.41 3.28
1899 3825 7.070571 AGTGAAAACAAGTTGGATATTTCCCAA 59.929 33.333 7.96 0.00 41.83 4.12
1900 3826 6.553100 AGTGAAAACAAGTTGGATATTTCCCA 59.447 34.615 7.96 0.00 41.83 4.37
1901 3827 6.993079 AGTGAAAACAAGTTGGATATTTCCC 58.007 36.000 7.96 4.42 41.83 3.97
1908 3834 8.357402 GGTGTAATTAGTGAAAACAAGTTGGAT 58.643 33.333 7.96 0.00 0.00 3.41
1909 3835 7.339721 TGGTGTAATTAGTGAAAACAAGTTGGA 59.660 33.333 7.96 0.00 0.00 3.53
1910 3836 7.484975 TGGTGTAATTAGTGAAAACAAGTTGG 58.515 34.615 7.96 0.00 0.00 3.77
1911 3837 8.402472 TCTGGTGTAATTAGTGAAAACAAGTTG 58.598 33.333 0.00 0.00 0.00 3.16
1912 3838 8.403236 GTCTGGTGTAATTAGTGAAAACAAGTT 58.597 33.333 0.00 0.00 0.00 2.66
1913 3839 7.554835 TGTCTGGTGTAATTAGTGAAAACAAGT 59.445 33.333 0.00 0.00 0.00 3.16
1914 3840 7.925993 TGTCTGGTGTAATTAGTGAAAACAAG 58.074 34.615 0.00 0.00 0.00 3.16
1915 3841 7.867305 TGTCTGGTGTAATTAGTGAAAACAA 57.133 32.000 0.00 0.00 0.00 2.83
1916 3842 9.733556 ATATGTCTGGTGTAATTAGTGAAAACA 57.266 29.630 0.00 0.00 0.00 2.83
1928 3854 9.908152 CGACAATATAGAATATGTCTGGTGTAA 57.092 33.333 0.00 0.00 39.94 2.41
1929 3855 8.027189 GCGACAATATAGAATATGTCTGGTGTA 58.973 37.037 0.00 0.00 39.94 2.90
1930 3856 6.868864 GCGACAATATAGAATATGTCTGGTGT 59.131 38.462 0.00 0.00 39.94 4.16
1931 3857 6.868339 TGCGACAATATAGAATATGTCTGGTG 59.132 38.462 0.00 0.00 39.94 4.17
1932 3858 6.868864 GTGCGACAATATAGAATATGTCTGGT 59.131 38.462 0.00 0.00 39.94 4.00
1933 3859 6.868339 TGTGCGACAATATAGAATATGTCTGG 59.132 38.462 0.00 0.00 39.94 3.86
1934 3860 7.411264 GCTGTGCGACAATATAGAATATGTCTG 60.411 40.741 0.00 0.00 39.94 3.51
1935 3861 6.587990 GCTGTGCGACAATATAGAATATGTCT 59.412 38.462 0.00 0.00 39.94 3.41
1936 3862 6.587990 AGCTGTGCGACAATATAGAATATGTC 59.412 38.462 0.00 0.00 38.98 3.06
1937 3863 6.459066 AGCTGTGCGACAATATAGAATATGT 58.541 36.000 0.00 0.00 0.00 2.29
1938 3864 6.957984 AGCTGTGCGACAATATAGAATATG 57.042 37.500 0.00 0.00 0.00 1.78
1939 3865 9.658799 ATTTAGCTGTGCGACAATATAGAATAT 57.341 29.630 0.00 0.00 0.00 1.28
1940 3866 9.140286 GATTTAGCTGTGCGACAATATAGAATA 57.860 33.333 0.00 0.00 0.00 1.75
1941 3867 7.875041 AGATTTAGCTGTGCGACAATATAGAAT 59.125 33.333 0.00 0.00 0.00 2.40
1942 3868 7.169813 CAGATTTAGCTGTGCGACAATATAGAA 59.830 37.037 0.00 0.00 0.00 2.10
1943 3869 6.642540 CAGATTTAGCTGTGCGACAATATAGA 59.357 38.462 0.00 0.00 0.00 1.98
1944 3870 6.422100 ACAGATTTAGCTGTGCGACAATATAG 59.578 38.462 0.00 0.00 46.72 1.31
1945 3871 6.280643 ACAGATTTAGCTGTGCGACAATATA 58.719 36.000 0.00 0.00 46.72 0.86
1946 3872 5.118990 ACAGATTTAGCTGTGCGACAATAT 58.881 37.500 0.00 0.00 46.72 1.28
1947 3873 4.503910 ACAGATTTAGCTGTGCGACAATA 58.496 39.130 0.00 0.00 46.72 1.90
1948 3874 3.338249 ACAGATTTAGCTGTGCGACAAT 58.662 40.909 0.00 0.00 46.72 2.71
1949 3875 2.766313 ACAGATTTAGCTGTGCGACAA 58.234 42.857 0.00 0.00 46.72 3.18
1950 3876 2.455674 ACAGATTTAGCTGTGCGACA 57.544 45.000 0.00 0.00 46.72 4.35
1957 3883 4.808077 AATCATGCGACAGATTTAGCTG 57.192 40.909 0.00 0.00 41.63 4.24
1958 3884 6.707608 TGATAAATCATGCGACAGATTTAGCT 59.292 34.615 21.43 0.00 45.85 3.32
1959 3885 6.891624 TGATAAATCATGCGACAGATTTAGC 58.108 36.000 17.54 17.54 44.92 3.09
1960 3886 8.302965 TCTGATAAATCATGCGACAGATTTAG 57.697 34.615 16.28 9.15 44.92 1.85
1961 3887 8.551205 GTTCTGATAAATCATGCGACAGATTTA 58.449 33.333 14.60 14.60 45.45 1.40
1962 3888 7.412853 GTTCTGATAAATCATGCGACAGATTT 58.587 34.615 12.04 12.04 44.24 2.17
1963 3889 6.292542 CGTTCTGATAAATCATGCGACAGATT 60.293 38.462 0.00 0.00 36.02 2.40
1964 3890 5.176406 CGTTCTGATAAATCATGCGACAGAT 59.824 40.000 0.00 0.00 36.02 2.90
1965 3891 4.504097 CGTTCTGATAAATCATGCGACAGA 59.496 41.667 0.00 0.00 36.02 3.41
1966 3892 4.504097 TCGTTCTGATAAATCATGCGACAG 59.496 41.667 8.52 0.00 36.02 3.51
1967 3893 4.429108 TCGTTCTGATAAATCATGCGACA 58.571 39.130 8.52 0.00 36.02 4.35
1968 3894 5.232202 TCTTCGTTCTGATAAATCATGCGAC 59.768 40.000 10.82 1.58 35.51 5.19
1969 3895 5.348164 TCTTCGTTCTGATAAATCATGCGA 58.652 37.500 8.52 8.52 36.02 5.10
1970 3896 5.641777 TCTTCGTTCTGATAAATCATGCG 57.358 39.130 0.00 0.00 36.02 4.73
1971 3897 8.304202 ACTATCTTCGTTCTGATAAATCATGC 57.696 34.615 0.00 0.00 36.02 4.06
2003 3929 8.558700 GGTTCATGTTGCAACTTTTTAATCATT 58.441 29.630 28.61 0.00 0.00 2.57
2004 3930 7.095691 CGGTTCATGTTGCAACTTTTTAATCAT 60.096 33.333 28.61 9.14 0.00 2.45
2005 3931 6.199908 CGGTTCATGTTGCAACTTTTTAATCA 59.800 34.615 28.61 7.08 0.00 2.57
2006 3932 6.346518 CCGGTTCATGTTGCAACTTTTTAATC 60.347 38.462 28.61 15.21 0.00 1.75
2007 3933 5.465056 CCGGTTCATGTTGCAACTTTTTAAT 59.535 36.000 28.61 11.23 0.00 1.40
2008 3934 4.806247 CCGGTTCATGTTGCAACTTTTTAA 59.194 37.500 28.61 13.90 0.00 1.52
2009 3935 4.142138 ACCGGTTCATGTTGCAACTTTTTA 60.142 37.500 28.61 10.03 0.00 1.52
2010 3936 3.194062 CCGGTTCATGTTGCAACTTTTT 58.806 40.909 28.61 9.70 0.00 1.94
2011 3937 2.167487 ACCGGTTCATGTTGCAACTTTT 59.833 40.909 28.61 12.11 0.00 2.27
2012 3938 1.754226 ACCGGTTCATGTTGCAACTTT 59.246 42.857 28.61 14.56 0.00 2.66
2013 3939 1.398692 ACCGGTTCATGTTGCAACTT 58.601 45.000 28.61 20.54 0.00 2.66
2014 3940 2.264005 TACCGGTTCATGTTGCAACT 57.736 45.000 28.61 12.75 0.00 3.16
2015 3941 4.893424 ATATACCGGTTCATGTTGCAAC 57.107 40.909 22.83 22.83 0.00 4.17
2016 3942 6.017523 CACATATATACCGGTTCATGTTGCAA 60.018 38.462 15.04 0.00 0.00 4.08
2017 3943 5.468409 CACATATATACCGGTTCATGTTGCA 59.532 40.000 15.04 0.00 0.00 4.08
2018 3944 5.616866 GCACATATATACCGGTTCATGTTGC 60.617 44.000 15.04 17.08 0.00 4.17
2019 3945 5.468409 TGCACATATATACCGGTTCATGTTG 59.532 40.000 15.04 11.09 0.00 3.33
2020 3946 5.616270 TGCACATATATACCGGTTCATGTT 58.384 37.500 15.04 0.00 0.00 2.71
2021 3947 5.222079 TGCACATATATACCGGTTCATGT 57.778 39.130 15.04 14.30 0.00 3.21
2022 3948 5.874261 TCATGCACATATATACCGGTTCATG 59.126 40.000 15.04 13.64 36.61 3.07
2023 3949 6.048732 TCATGCACATATATACCGGTTCAT 57.951 37.500 15.04 9.30 0.00 2.57
2024 3950 5.476091 TCATGCACATATATACCGGTTCA 57.524 39.130 15.04 0.00 0.00 3.18
2025 3951 6.985188 AATCATGCACATATATACCGGTTC 57.015 37.500 15.04 0.00 0.00 3.62
2026 3952 7.759489 AAAATCATGCACATATATACCGGTT 57.241 32.000 15.04 3.05 0.00 4.44
2027 3953 7.759489 AAAAATCATGCACATATATACCGGT 57.241 32.000 13.98 13.98 0.00 5.28
2049 3975 9.114952 GAAAACAAGTTGGATATTTCCCAAAAA 57.885 29.630 7.96 0.00 44.41 1.94
2050 3976 7.439655 CGAAAACAAGTTGGATATTTCCCAAAA 59.560 33.333 7.96 0.00 44.41 2.44
2051 3977 6.926272 CGAAAACAAGTTGGATATTTCCCAAA 59.074 34.615 7.96 0.00 44.41 3.28
2052 3978 6.451393 CGAAAACAAGTTGGATATTTCCCAA 58.549 36.000 7.96 0.00 41.83 4.12
2053 3979 5.565834 GCGAAAACAAGTTGGATATTTCCCA 60.566 40.000 7.96 0.00 41.83 4.37
2054 3980 4.862574 GCGAAAACAAGTTGGATATTTCCC 59.137 41.667 7.96 2.15 41.83 3.97
2055 3981 5.709966 AGCGAAAACAAGTTGGATATTTCC 58.290 37.500 7.96 0.00 42.94 3.13
2056 3982 8.911247 ATTAGCGAAAACAAGTTGGATATTTC 57.089 30.769 7.96 10.65 0.00 2.17
2058 3984 9.783256 GTAATTAGCGAAAACAAGTTGGATATT 57.217 29.630 7.96 0.00 0.00 1.28
2059 3985 8.952278 TGTAATTAGCGAAAACAAGTTGGATAT 58.048 29.630 7.96 0.00 0.00 1.63
2060 3986 8.231837 GTGTAATTAGCGAAAACAAGTTGGATA 58.768 33.333 7.96 0.00 0.00 2.59
2061 3987 7.081976 GTGTAATTAGCGAAAACAAGTTGGAT 58.918 34.615 7.96 0.00 0.00 3.41
2062 3988 6.432107 GTGTAATTAGCGAAAACAAGTTGGA 58.568 36.000 7.96 0.00 0.00 3.53
2063 3989 5.627780 GGTGTAATTAGCGAAAACAAGTTGG 59.372 40.000 7.96 0.00 0.00 3.77
2064 3990 6.202937 TGGTGTAATTAGCGAAAACAAGTTG 58.797 36.000 0.00 0.00 0.00 3.16
2065 3991 6.261381 TCTGGTGTAATTAGCGAAAACAAGTT 59.739 34.615 0.00 0.00 0.00 2.66
2066 3992 5.761234 TCTGGTGTAATTAGCGAAAACAAGT 59.239 36.000 0.00 0.00 0.00 3.16
2067 3993 6.077838 GTCTGGTGTAATTAGCGAAAACAAG 58.922 40.000 0.00 0.00 0.00 3.16
2068 3994 5.527951 TGTCTGGTGTAATTAGCGAAAACAA 59.472 36.000 0.00 0.00 0.00 2.83
2069 3995 5.057819 TGTCTGGTGTAATTAGCGAAAACA 58.942 37.500 0.00 0.00 0.00 2.83
2070 3996 5.600908 TGTCTGGTGTAATTAGCGAAAAC 57.399 39.130 0.00 0.00 0.00 2.43
2071 3997 8.500753 AATATGTCTGGTGTAATTAGCGAAAA 57.499 30.769 0.00 0.00 0.00 2.29
2072 3998 7.985184 AGAATATGTCTGGTGTAATTAGCGAAA 59.015 33.333 0.00 0.00 34.29 3.46
2073 3999 7.497595 AGAATATGTCTGGTGTAATTAGCGAA 58.502 34.615 0.00 0.00 34.29 4.70
2074 4000 7.050970 AGAATATGTCTGGTGTAATTAGCGA 57.949 36.000 0.00 0.00 34.29 4.93
2075 4001 8.988064 ATAGAATATGTCTGGTGTAATTAGCG 57.012 34.615 0.00 0.00 37.12 4.26
2081 4007 9.908152 CGACAATATAGAATATGTCTGGTGTAA 57.092 33.333 0.00 0.00 39.94 2.41
2082 4008 8.027189 GCGACAATATAGAATATGTCTGGTGTA 58.973 37.037 0.00 0.00 39.94 2.90
2083 4009 6.868864 GCGACAATATAGAATATGTCTGGTGT 59.131 38.462 0.00 0.00 39.94 4.16
2084 4010 6.868339 TGCGACAATATAGAATATGTCTGGTG 59.132 38.462 0.00 0.00 39.94 4.17
2085 4011 6.868864 GTGCGACAATATAGAATATGTCTGGT 59.131 38.462 0.00 0.00 39.94 4.00
2086 4012 6.868339 TGTGCGACAATATAGAATATGTCTGG 59.132 38.462 0.00 0.00 39.94 3.86
2087 4013 7.411264 GCTGTGCGACAATATAGAATATGTCTG 60.411 40.741 0.00 0.00 39.94 3.51
2088 4014 6.587990 GCTGTGCGACAATATAGAATATGTCT 59.412 38.462 0.00 0.00 39.94 3.41
2089 4015 6.587990 AGCTGTGCGACAATATAGAATATGTC 59.412 38.462 0.00 0.00 38.98 3.06
2090 4016 6.459066 AGCTGTGCGACAATATAGAATATGT 58.541 36.000 0.00 0.00 0.00 2.29
2091 4017 6.957984 AGCTGTGCGACAATATAGAATATG 57.042 37.500 0.00 0.00 0.00 1.78
2092 4018 9.658799 ATTTAGCTGTGCGACAATATAGAATAT 57.341 29.630 0.00 0.00 0.00 1.28
2093 4019 9.489084 AATTTAGCTGTGCGACAATATAGAATA 57.511 29.630 0.00 0.00 0.00 1.75
2094 4020 7.969536 ATTTAGCTGTGCGACAATATAGAAT 57.030 32.000 0.00 0.00 0.00 2.40
2095 4021 7.786178 AATTTAGCTGTGCGACAATATAGAA 57.214 32.000 0.00 0.00 0.00 2.10
2096 4022 7.279981 ACAAATTTAGCTGTGCGACAATATAGA 59.720 33.333 0.00 0.00 0.00 1.98
2097 4023 7.409697 ACAAATTTAGCTGTGCGACAATATAG 58.590 34.615 0.00 0.00 0.00 1.31
2098 4024 7.315247 ACAAATTTAGCTGTGCGACAATATA 57.685 32.000 0.00 0.00 0.00 0.86
2099 4025 6.194796 ACAAATTTAGCTGTGCGACAATAT 57.805 33.333 0.00 0.00 0.00 1.28
2100 4026 5.621197 ACAAATTTAGCTGTGCGACAATA 57.379 34.783 0.00 0.00 0.00 1.90
2101 4027 4.503741 ACAAATTTAGCTGTGCGACAAT 57.496 36.364 0.00 0.00 0.00 2.71
2102 4028 3.980646 ACAAATTTAGCTGTGCGACAA 57.019 38.095 0.00 0.00 0.00 3.18
2103 4029 3.120338 GCTACAAATTTAGCTGTGCGACA 60.120 43.478 0.00 0.00 41.24 4.35
2104 4030 3.120338 TGCTACAAATTTAGCTGTGCGAC 60.120 43.478 12.87 0.00 44.26 5.19
2105 4031 3.070748 TGCTACAAATTTAGCTGTGCGA 58.929 40.909 12.87 0.00 44.26 5.10
2106 4032 3.469899 TGCTACAAATTTAGCTGTGCG 57.530 42.857 12.87 0.00 44.26 5.34
2107 4033 4.985413 TCATGCTACAAATTTAGCTGTGC 58.015 39.130 12.87 5.42 44.26 4.57
2108 4034 9.740239 ATAAATCATGCTACAAATTTAGCTGTG 57.260 29.630 12.87 11.40 44.26 3.66
2109 4035 9.956720 GATAAATCATGCTACAAATTTAGCTGT 57.043 29.630 12.87 0.72 44.26 4.40
2110 4036 9.955208 TGATAAATCATGCTACAAATTTAGCTG 57.045 29.630 12.87 9.18 44.26 4.24
2112 4038 9.403110 CCTGATAAATCATGCTACAAATTTAGC 57.597 33.333 6.07 6.07 37.81 3.09
2115 4041 8.636213 CCTCCTGATAAATCATGCTACAAATTT 58.364 33.333 0.00 0.00 36.02 1.82
2116 4042 8.000709 TCCTCCTGATAAATCATGCTACAAATT 58.999 33.333 0.00 0.00 36.02 1.82
2117 4043 7.520798 TCCTCCTGATAAATCATGCTACAAAT 58.479 34.615 0.00 0.00 36.02 2.32
2118 4044 6.899089 TCCTCCTGATAAATCATGCTACAAA 58.101 36.000 0.00 0.00 36.02 2.83
2119 4045 6.499106 TCCTCCTGATAAATCATGCTACAA 57.501 37.500 0.00 0.00 36.02 2.41
2120 4046 6.499106 TTCCTCCTGATAAATCATGCTACA 57.501 37.500 0.00 0.00 36.02 2.74
2121 4047 7.807977 TTTTCCTCCTGATAAATCATGCTAC 57.192 36.000 0.00 0.00 36.02 3.58
2122 4048 9.730705 CTATTTTCCTCCTGATAAATCATGCTA 57.269 33.333 0.00 0.00 36.02 3.49
2123 4049 8.223330 ACTATTTTCCTCCTGATAAATCATGCT 58.777 33.333 0.00 0.00 36.02 3.79
2124 4050 8.401490 ACTATTTTCCTCCTGATAAATCATGC 57.599 34.615 0.00 0.00 36.02 4.06
2153 4079 9.656040 TCATGCTGCAACTTTTTAATCATTATT 57.344 25.926 6.36 0.00 0.00 1.40
2154 4080 9.656040 TTCATGCTGCAACTTTTTAATCATTAT 57.344 25.926 6.36 0.00 0.00 1.28
2155 4081 8.924691 GTTCATGCTGCAACTTTTTAATCATTA 58.075 29.630 6.36 0.00 0.00 1.90
2156 4082 7.095102 GGTTCATGCTGCAACTTTTTAATCATT 60.095 33.333 6.36 0.00 0.00 2.57
2157 4083 6.369615 GGTTCATGCTGCAACTTTTTAATCAT 59.630 34.615 6.36 0.00 0.00 2.45
2158 4084 5.695816 GGTTCATGCTGCAACTTTTTAATCA 59.304 36.000 6.36 0.00 0.00 2.57
2159 4085 5.164061 CGGTTCATGCTGCAACTTTTTAATC 60.164 40.000 6.36 0.00 0.00 1.75
2160 4086 4.685628 CGGTTCATGCTGCAACTTTTTAAT 59.314 37.500 6.36 0.00 0.00 1.40
2161 4087 4.047822 CGGTTCATGCTGCAACTTTTTAA 58.952 39.130 6.36 0.00 0.00 1.52
2162 4088 3.551863 CCGGTTCATGCTGCAACTTTTTA 60.552 43.478 6.36 0.00 0.00 1.52
2163 4089 2.472816 CGGTTCATGCTGCAACTTTTT 58.527 42.857 6.36 0.00 0.00 1.94
2164 4090 1.269726 CCGGTTCATGCTGCAACTTTT 60.270 47.619 6.36 0.00 0.00 2.27
2165 4091 0.314935 CCGGTTCATGCTGCAACTTT 59.685 50.000 6.36 0.00 0.00 2.66
2166 4092 0.823356 ACCGGTTCATGCTGCAACTT 60.823 50.000 6.36 0.00 0.00 2.66
2167 4093 0.036164 TACCGGTTCATGCTGCAACT 59.964 50.000 15.04 0.00 0.00 3.16
2168 4094 1.094785 ATACCGGTTCATGCTGCAAC 58.905 50.000 15.04 0.00 0.00 4.17
2169 4095 2.700722 TATACCGGTTCATGCTGCAA 57.299 45.000 15.04 0.00 0.00 4.08
2170 4096 2.928801 ATATACCGGTTCATGCTGCA 57.071 45.000 15.04 4.13 0.00 4.41
2171 4097 4.093408 CACATATATACCGGTTCATGCTGC 59.907 45.833 15.04 0.00 0.00 5.25
2172 4098 4.093408 GCACATATATACCGGTTCATGCTG 59.907 45.833 15.04 10.93 0.00 4.41
2173 4099 4.253685 GCACATATATACCGGTTCATGCT 58.746 43.478 15.04 0.00 0.00 3.79
2174 4100 4.000325 TGCACATATATACCGGTTCATGC 59.000 43.478 15.04 13.97 0.00 4.06
2175 4101 5.874261 TCATGCACATATATACCGGTTCATG 59.126 40.000 15.04 13.64 36.61 3.07
2176 4102 6.048732 TCATGCACATATATACCGGTTCAT 57.951 37.500 15.04 9.30 0.00 2.57
2177 4103 5.476091 TCATGCACATATATACCGGTTCA 57.524 39.130 15.04 0.00 0.00 3.18
2178 4104 6.985188 AATCATGCACATATATACCGGTTC 57.015 37.500 15.04 0.00 0.00 3.62
2179 4105 7.759489 AAAATCATGCACATATATACCGGTT 57.241 32.000 15.04 3.05 0.00 4.44
2180 4106 7.759489 AAAAATCATGCACATATATACCGGT 57.241 32.000 13.98 13.98 0.00 5.28
2202 4128 3.828875 AGTTGCGAAAATCCCCAAAAA 57.171 38.095 0.00 0.00 0.00 1.94
2203 4129 3.828875 AAGTTGCGAAAATCCCCAAAA 57.171 38.095 0.00 0.00 0.00 2.44
2204 4130 4.939052 TTAAGTTGCGAAAATCCCCAAA 57.061 36.364 0.00 0.00 0.00 3.28
2205 4131 4.585162 TCTTTAAGTTGCGAAAATCCCCAA 59.415 37.500 0.00 0.00 0.00 4.12
2206 4132 4.145807 TCTTTAAGTTGCGAAAATCCCCA 58.854 39.130 0.00 0.00 0.00 4.96
2207 4133 4.776795 TCTTTAAGTTGCGAAAATCCCC 57.223 40.909 0.00 0.00 0.00 4.81
2208 4134 5.105917 TGGATCTTTAAGTTGCGAAAATCCC 60.106 40.000 0.00 0.00 0.00 3.85
2209 4135 5.949735 TGGATCTTTAAGTTGCGAAAATCC 58.050 37.500 0.00 0.00 0.00 3.01
2210 4136 7.084486 AGTTGGATCTTTAAGTTGCGAAAATC 58.916 34.615 0.00 0.00 0.00 2.17
2211 4137 6.981722 AGTTGGATCTTTAAGTTGCGAAAAT 58.018 32.000 0.00 0.00 0.00 1.82
2212 4138 6.385649 AGTTGGATCTTTAAGTTGCGAAAA 57.614 33.333 0.00 0.00 0.00 2.29
2213 4139 6.385649 AAGTTGGATCTTTAAGTTGCGAAA 57.614 33.333 0.00 0.00 0.00 3.46
2214 4140 6.385649 AAAGTTGGATCTTTAAGTTGCGAA 57.614 33.333 0.00 0.00 36.12 4.70
2215 4141 6.385649 AAAAGTTGGATCTTTAAGTTGCGA 57.614 33.333 0.00 0.00 36.75 5.10
2236 4162 5.245531 AGATCAGGTGTAATCAGCGAAAAA 58.754 37.500 0.00 0.00 45.42 1.94
2237 4163 4.832248 AGATCAGGTGTAATCAGCGAAAA 58.168 39.130 0.00 0.00 45.42 2.29
2238 4164 4.471904 AGATCAGGTGTAATCAGCGAAA 57.528 40.909 0.00 0.00 45.42 3.46
2239 4165 5.791336 ATAGATCAGGTGTAATCAGCGAA 57.209 39.130 0.00 0.00 45.42 4.70
2240 4166 5.536538 AGAATAGATCAGGTGTAATCAGCGA 59.463 40.000 0.00 0.00 45.42 4.93
2241 4167 5.777802 AGAATAGATCAGGTGTAATCAGCG 58.222 41.667 0.00 0.00 45.42 5.18
2248 4174 8.459635 GCGACAATATAGAATAGATCAGGTGTA 58.540 37.037 0.00 0.00 0.00 2.90
2249 4175 7.039714 TGCGACAATATAGAATAGATCAGGTGT 60.040 37.037 0.00 0.00 0.00 4.16
2250 4176 7.274468 GTGCGACAATATAGAATAGATCAGGTG 59.726 40.741 0.00 0.00 0.00 4.00
2251 4177 7.039714 TGTGCGACAATATAGAATAGATCAGGT 60.040 37.037 0.00 0.00 0.00 4.00
2252 4178 7.315890 TGTGCGACAATATAGAATAGATCAGG 58.684 38.462 0.00 0.00 0.00 3.86
2253 4179 8.748380 TTGTGCGACAATATAGAATAGATCAG 57.252 34.615 0.00 0.00 32.34 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.