Multiple sequence alignment - TraesCS7A01G165400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G165400 chr7A 100.000 2366 0 0 1 2366 120997356 120999721 0.000000e+00 4370.0
1 TraesCS7A01G165400 chr7B 90.487 862 53 10 655 1494 76071608 76072462 0.000000e+00 1110.0
2 TraesCS7A01G165400 chr7B 87.597 129 14 2 1901 2029 76072861 76072987 5.270000e-32 148.0
3 TraesCS7A01G165400 chr7D 87.793 852 53 16 667 1494 116991534 116992358 0.000000e+00 950.0
4 TraesCS7A01G165400 chr7D 88.515 357 20 8 1675 2029 116992349 116992686 1.690000e-111 412.0
5 TraesCS7A01G165400 chr7D 91.480 223 17 2 1 222 116989920 116990141 2.950000e-79 305.0
6 TraesCS7A01G165400 chr7D 78.781 443 75 15 180 611 611482728 611483162 1.790000e-71 279.0
7 TraesCS7A01G165400 chr7D 83.333 108 17 1 2248 2355 116992688 116992794 5.380000e-17 99.0
8 TraesCS7A01G165400 chr7D 97.500 40 1 0 2049 2088 3754149 3754188 4.220000e-08 69.4
9 TraesCS7A01G165400 chr7D 95.349 43 2 0 2049 2091 39532186 39532144 4.220000e-08 69.4
10 TraesCS7A01G165400 chr3A 94.536 183 9 1 1495 1676 686989695 686989877 4.980000e-72 281.0
11 TraesCS7A01G165400 chr3D 88.043 184 18 3 1493 1675 137021026 137020846 5.120000e-52 215.0
12 TraesCS7A01G165400 chr3D 85.930 199 22 6 1487 1683 429728331 429728137 8.570000e-50 207.0
13 TraesCS7A01G165400 chr3D 86.702 188 18 5 1494 1677 91684919 91684735 3.990000e-48 202.0
14 TraesCS7A01G165400 chr1B 86.058 208 19 6 1479 1683 297302360 297302560 5.120000e-52 215.0
15 TraesCS7A01G165400 chr2B 87.368 190 18 3 1492 1676 71315304 71315492 1.840000e-51 213.0
16 TraesCS7A01G165400 chr4A 86.070 201 20 7 1494 1693 648145583 648145390 2.380000e-50 209.0
17 TraesCS7A01G165400 chr2D 87.568 185 18 5 1493 1675 45122653 45122834 2.380000e-50 209.0
18 TraesCS7A01G165400 chr2A 86.413 184 19 4 1491 1674 764206032 764206209 1.860000e-46 196.0
19 TraesCS7A01G165400 chr2A 88.889 63 5 2 2024 2086 733925309 733925369 2.520000e-10 76.8
20 TraesCS7A01G165400 chr6A 93.750 48 2 1 2049 2095 21523762 21523715 1.170000e-08 71.3
21 TraesCS7A01G165400 chr6A 88.679 53 5 1 2049 2101 568162379 568162430 1.960000e-06 63.9
22 TraesCS7A01G165400 chr6B 86.154 65 7 2 2024 2088 203689251 203689313 4.220000e-08 69.4
23 TraesCS7A01G165400 chr1A 88.333 60 3 2 2027 2086 557887582 557887637 4.220000e-08 69.4
24 TraesCS7A01G165400 chr5B 93.478 46 2 1 2049 2093 623210558 623210513 1.520000e-07 67.6
25 TraesCS7A01G165400 chr5B 93.478 46 2 1 2049 2093 626871954 626871909 1.520000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G165400 chr7A 120997356 120999721 2365 False 4370.0 4370 100.00000 1 2366 1 chr7A.!!$F1 2365
1 TraesCS7A01G165400 chr7B 76071608 76072987 1379 False 629.0 1110 89.04200 655 2029 2 chr7B.!!$F1 1374
2 TraesCS7A01G165400 chr7D 116989920 116992794 2874 False 441.5 950 87.78025 1 2355 4 chr7D.!!$F3 2354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 1183 0.109342 CAAGGGCCTTGGCGATAGAT 59.891 55.0 34.03 0.0 37.77 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 2697 0.248702 GTCGGAGAGAAGACGATGCC 60.249 60.0 0.0 0.0 38.99 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 2.993146 TCAGGGAAGATTCCTCCCAAAA 59.007 45.455 20.32 4.58 46.72 2.44
144 145 2.181021 GACCGGCTCAGGTGTACG 59.819 66.667 0.00 0.00 46.09 3.67
156 157 4.308458 TGTACGCGCCAGGTTGCT 62.308 61.111 5.73 0.00 0.00 3.91
178 179 4.157120 GGTGACCTACGCGCCCAT 62.157 66.667 5.73 0.00 0.00 4.00
179 180 2.890474 GTGACCTACGCGCCCATG 60.890 66.667 5.73 0.00 0.00 3.66
222 900 4.510340 TGACTCTTTTACGAAAGTTGAGCC 59.490 41.667 0.00 0.00 46.40 4.70
235 913 2.912956 AGTTGAGCCAGATTTGACCCTA 59.087 45.455 0.00 0.00 0.00 3.53
239 917 3.330701 TGAGCCAGATTTGACCCTAGTTT 59.669 43.478 0.00 0.00 0.00 2.66
240 918 4.534500 TGAGCCAGATTTGACCCTAGTTTA 59.466 41.667 0.00 0.00 0.00 2.01
241 919 5.104259 AGCCAGATTTGACCCTAGTTTAG 57.896 43.478 0.00 0.00 0.00 1.85
242 920 4.783227 AGCCAGATTTGACCCTAGTTTAGA 59.217 41.667 0.00 0.00 0.00 2.10
292 970 1.464376 ATCAGGGTCGATGGCGGTAG 61.464 60.000 0.00 0.00 38.28 3.18
293 971 2.838225 AGGGTCGATGGCGGTAGG 60.838 66.667 0.00 0.00 38.28 3.18
294 972 3.925090 GGGTCGATGGCGGTAGGG 61.925 72.222 0.00 0.00 38.28 3.53
295 973 3.152400 GGTCGATGGCGGTAGGGT 61.152 66.667 0.00 0.00 38.28 4.34
296 974 1.829533 GGTCGATGGCGGTAGGGTA 60.830 63.158 0.00 0.00 38.28 3.69
300 978 2.098770 GTCGATGGCGGTAGGGTATATC 59.901 54.545 0.00 0.00 38.28 1.63
301 979 2.097036 CGATGGCGGTAGGGTATATCA 58.903 52.381 0.00 0.00 0.00 2.15
302 980 2.099263 CGATGGCGGTAGGGTATATCAG 59.901 54.545 0.00 0.00 0.00 2.90
303 981 2.688902 TGGCGGTAGGGTATATCAGT 57.311 50.000 0.00 0.00 0.00 3.41
308 988 4.567327 GGCGGTAGGGTATATCAGTCTACT 60.567 50.000 0.00 0.00 33.06 2.57
311 991 4.705991 GGTAGGGTATATCAGTCTACTGCC 59.294 50.000 5.21 0.78 43.46 4.85
316 996 4.833380 GGTATATCAGTCTACTGCCAAGGA 59.167 45.833 5.21 0.00 43.46 3.36
323 1003 1.207791 CTACTGCCAAGGACCCTGAT 58.792 55.000 0.00 0.00 0.00 2.90
356 1036 3.766676 ATCTACGTCAGTGTAGTGCAG 57.233 47.619 0.00 0.00 42.01 4.41
358 1038 0.242825 TACGTCAGTGTAGTGCAGCC 59.757 55.000 0.00 0.00 0.00 4.85
370 1050 0.676782 GTGCAGCCCTACCGTCAAAT 60.677 55.000 0.00 0.00 0.00 2.32
377 1057 1.485066 CCCTACCGTCAAATAGGCTGT 59.515 52.381 0.00 0.00 37.26 4.40
393 1073 1.947678 GCTGTCAGTAGCCTGTGCAAT 60.948 52.381 0.93 0.00 41.13 3.56
403 1083 2.125310 TGTGCAATCCTACCGCCG 60.125 61.111 0.00 0.00 0.00 6.46
425 1113 4.367023 GCCCGACGGTAGTGTGCA 62.367 66.667 13.94 0.00 0.00 4.57
439 1127 6.237835 CGGTAGTGTGCAGTATTTGATACTTG 60.238 42.308 0.00 0.00 43.27 3.16
440 1128 6.816640 GGTAGTGTGCAGTATTTGATACTTGA 59.183 38.462 0.00 0.00 43.27 3.02
442 1130 9.529325 GTAGTGTGCAGTATTTGATACTTGATA 57.471 33.333 0.00 0.00 43.27 2.15
473 1161 2.772287 GATAAGGCATGCACCTCTACC 58.228 52.381 21.36 0.00 39.93 3.18
494 1182 1.526887 CAAGGGCCTTGGCGATAGA 59.473 57.895 34.03 0.00 37.77 1.98
495 1183 0.109342 CAAGGGCCTTGGCGATAGAT 59.891 55.000 34.03 0.00 37.77 1.98
508 1196 8.871125 CCTTGGCGATAGATTATTATACCCTAT 58.129 37.037 0.00 0.00 39.76 2.57
541 1229 0.675837 GGCGGTAGGAAAAGGGTCAC 60.676 60.000 0.00 0.00 0.00 3.67
542 1230 1.017701 GCGGTAGGAAAAGGGTCACG 61.018 60.000 0.00 0.00 0.00 4.35
546 1234 2.353505 GGTAGGAAAAGGGTCACGTCTC 60.354 54.545 0.00 0.00 0.00 3.36
547 1235 1.420430 AGGAAAAGGGTCACGTCTCA 58.580 50.000 0.00 0.00 0.00 3.27
550 1238 2.946990 GGAAAAGGGTCACGTCTCAAAA 59.053 45.455 0.00 0.00 0.00 2.44
551 1239 3.379057 GGAAAAGGGTCACGTCTCAAAAA 59.621 43.478 0.00 0.00 0.00 1.94
573 1261 3.810310 ATTCCGAACCAGAGTCAGATC 57.190 47.619 0.00 0.00 0.00 2.75
575 1263 2.808919 TCCGAACCAGAGTCAGATCTT 58.191 47.619 0.00 0.00 0.00 2.40
595 1283 2.020720 TGCTCAACTTTCGCAAAAGGA 58.979 42.857 1.57 0.00 45.15 3.36
604 1292 5.600696 ACTTTCGCAAAAGGATCAAAACAT 58.399 33.333 1.57 0.00 45.15 2.71
606 1294 5.452078 TTCGCAAAAGGATCAAAACATCT 57.548 34.783 0.00 0.00 0.00 2.90
623 1311 1.500474 TCTCAATAGGACTGGCTGGG 58.500 55.000 0.00 0.00 0.00 4.45
624 1312 0.179034 CTCAATAGGACTGGCTGGGC 60.179 60.000 0.00 0.00 0.00 5.36
642 1330 2.486504 CGGCCGCTACAGTAACGA 59.513 61.111 14.67 0.00 0.00 3.85
644 1332 0.933509 CGGCCGCTACAGTAACGATC 60.934 60.000 14.67 0.00 0.00 3.69
650 1338 2.296563 GCTACAGTAACGATCGCTACG 58.703 52.381 19.75 16.83 0.00 3.51
651 1339 2.286067 GCTACAGTAACGATCGCTACGT 60.286 50.000 19.75 20.44 45.89 3.57
666 1354 0.249826 TACGTTTCTTTTCCGGCCGT 60.250 50.000 26.12 2.63 0.00 5.68
687 1640 1.695242 TGTTTCTTCTAGTTGGGCCGA 59.305 47.619 0.00 0.00 0.00 5.54
714 1676 2.413142 GGGACGTCCGATCGACCTT 61.413 63.158 27.68 0.00 42.93 3.50
724 1686 1.429463 GATCGACCTTTTGACGCACT 58.571 50.000 0.00 0.00 0.00 4.40
725 1687 1.798813 GATCGACCTTTTGACGCACTT 59.201 47.619 0.00 0.00 0.00 3.16
746 1708 1.227380 CGTCACATAGCAGCTCCCC 60.227 63.158 0.00 0.00 0.00 4.81
787 1756 5.506686 AAAAAGTTCTTCTCTGTTCTGCC 57.493 39.130 0.00 0.00 0.00 4.85
788 1757 4.429854 AAAGTTCTTCTCTGTTCTGCCT 57.570 40.909 0.00 0.00 0.00 4.75
846 1822 1.067821 CTTGTAGGACTCCGAGGCATC 59.932 57.143 3.00 0.00 0.00 3.91
876 1852 3.067742 TCCTATTCGGAACTTGGATCGAC 59.932 47.826 0.00 0.00 39.40 4.20
894 1870 7.094377 TGGATCGACATCTCATCGTGATAAATA 60.094 37.037 0.00 0.00 40.50 1.40
895 1871 7.430793 GGATCGACATCTCATCGTGATAAATAG 59.569 40.741 0.00 0.00 40.50 1.73
896 1872 7.203255 TCGACATCTCATCGTGATAAATAGT 57.797 36.000 0.00 0.00 40.50 2.12
926 1903 2.663852 ACTCCCAAACGCGTTCCG 60.664 61.111 26.77 18.84 44.21 4.30
941 1918 4.344474 CCGCTATCCGCCCGAGAC 62.344 72.222 0.00 0.00 35.03 3.36
957 1934 2.854777 CGAGACAGAAATCCACGATCAC 59.145 50.000 0.00 0.00 0.00 3.06
1011 1988 0.902531 AGACAGACATGGGGTTACCG 59.097 55.000 0.00 0.00 44.64 4.02
1033 2010 1.947146 CACGACGCTTTGACCGACA 60.947 57.895 0.00 0.00 0.00 4.35
1077 2063 4.796231 CCCGCCGAGGACACTTCG 62.796 72.222 0.00 0.00 45.00 3.79
1150 2136 1.153168 GATGTGCTGGCACCCGTAT 60.153 57.895 20.80 9.18 45.63 3.06
1151 2137 0.105964 GATGTGCTGGCACCCGTATA 59.894 55.000 20.80 3.75 45.63 1.47
1153 2139 1.523032 GTGCTGGCACCCGTATACC 60.523 63.158 14.03 0.00 40.79 2.73
1154 2140 1.990614 TGCTGGCACCCGTATACCA 60.991 57.895 0.00 0.00 0.00 3.25
1293 2279 3.322466 CCTCCCGCTGAAGGTGGT 61.322 66.667 0.00 0.00 43.71 4.16
1294 2280 2.266055 CTCCCGCTGAAGGTGGTC 59.734 66.667 0.00 0.00 43.71 4.02
1295 2281 2.525629 TCCCGCTGAAGGTGGTCA 60.526 61.111 0.00 0.00 43.71 4.02
1385 2371 1.517361 CAGCTGGCCAGATCGTGTA 59.483 57.895 37.21 0.00 0.00 2.90
1399 2385 2.847441 TCGTGTATAGCTGTCCTCGAT 58.153 47.619 0.00 0.00 0.00 3.59
1423 2409 2.168496 TGCCGCTAAGCTATAGGGTAG 58.832 52.381 1.04 2.53 0.00 3.18
1451 2437 2.871096 TTCTGCGGTATTTGGGACTT 57.129 45.000 0.00 0.00 0.00 3.01
1516 2502 9.737427 ATATCAGTTTGTCTAATTCACGTCTAG 57.263 33.333 0.00 0.00 0.00 2.43
1517 2503 7.210718 TCAGTTTGTCTAATTCACGTCTAGA 57.789 36.000 0.00 0.00 0.00 2.43
1518 2504 7.827701 TCAGTTTGTCTAATTCACGTCTAGAT 58.172 34.615 0.00 0.00 0.00 1.98
1519 2505 7.755373 TCAGTTTGTCTAATTCACGTCTAGATG 59.245 37.037 10.54 10.54 0.00 2.90
1520 2506 7.542477 CAGTTTGTCTAATTCACGTCTAGATGT 59.458 37.037 11.99 11.99 0.00 3.06
1521 2507 8.088981 AGTTTGTCTAATTCACGTCTAGATGTT 58.911 33.333 15.12 3.67 0.00 2.71
1522 2508 8.709646 GTTTGTCTAATTCACGTCTAGATGTTT 58.290 33.333 15.12 9.87 0.00 2.83
1523 2509 8.827177 TTGTCTAATTCACGTCTAGATGTTTT 57.173 30.769 15.12 11.28 0.00 2.43
1524 2510 8.827177 TGTCTAATTCACGTCTAGATGTTTTT 57.173 30.769 15.12 10.96 0.00 1.94
1547 2533 8.561738 TTTTAAGGATGTCACATCTAAACTCC 57.438 34.615 17.46 0.18 0.00 3.85
1548 2534 4.762289 AGGATGTCACATCTAAACTCCC 57.238 45.455 17.46 0.00 0.00 4.30
1549 2535 4.104086 AGGATGTCACATCTAAACTCCCA 58.896 43.478 17.46 0.00 0.00 4.37
1550 2536 4.723789 AGGATGTCACATCTAAACTCCCAT 59.276 41.667 17.46 0.00 0.00 4.00
1551 2537 5.905331 AGGATGTCACATCTAAACTCCCATA 59.095 40.000 17.46 0.00 0.00 2.74
1552 2538 6.386927 AGGATGTCACATCTAAACTCCCATAA 59.613 38.462 17.46 0.00 0.00 1.90
1553 2539 7.054124 GGATGTCACATCTAAACTCCCATAAA 58.946 38.462 17.46 0.00 0.00 1.40
1554 2540 7.721399 GGATGTCACATCTAAACTCCCATAAAT 59.279 37.037 17.46 0.00 0.00 1.40
1555 2541 9.778741 GATGTCACATCTAAACTCCCATAAATA 57.221 33.333 10.81 0.00 0.00 1.40
1557 2543 9.391006 TGTCACATCTAAACTCCCATAAATAAC 57.609 33.333 0.00 0.00 0.00 1.89
1558 2544 9.391006 GTCACATCTAAACTCCCATAAATAACA 57.609 33.333 0.00 0.00 0.00 2.41
1559 2545 9.391006 TCACATCTAAACTCCCATAAATAACAC 57.609 33.333 0.00 0.00 0.00 3.32
1560 2546 9.173021 CACATCTAAACTCCCATAAATAACACA 57.827 33.333 0.00 0.00 0.00 3.72
1561 2547 9.747898 ACATCTAAACTCCCATAAATAACACAA 57.252 29.630 0.00 0.00 0.00 3.33
1563 2549 9.747898 ATCTAAACTCCCATAAATAACACAACA 57.252 29.630 0.00 0.00 0.00 3.33
1564 2550 9.575868 TCTAAACTCCCATAAATAACACAACAA 57.424 29.630 0.00 0.00 0.00 2.83
1565 2551 9.620660 CTAAACTCCCATAAATAACACAACAAC 57.379 33.333 0.00 0.00 0.00 3.32
1566 2552 7.589958 AACTCCCATAAATAACACAACAACA 57.410 32.000 0.00 0.00 0.00 3.33
1567 2553 7.775053 ACTCCCATAAATAACACAACAACAT 57.225 32.000 0.00 0.00 0.00 2.71
1568 2554 7.601856 ACTCCCATAAATAACACAACAACATG 58.398 34.615 0.00 0.00 0.00 3.21
1569 2555 6.929625 TCCCATAAATAACACAACAACATGG 58.070 36.000 0.00 0.00 0.00 3.66
1570 2556 6.721668 TCCCATAAATAACACAACAACATGGA 59.278 34.615 0.00 0.00 33.73 3.41
1571 2557 7.233553 TCCCATAAATAACACAACAACATGGAA 59.766 33.333 0.00 0.00 33.73 3.53
1572 2558 8.040132 CCCATAAATAACACAACAACATGGAAT 58.960 33.333 0.00 0.00 33.73 3.01
1624 2610 3.135414 CACAAACACAGTGGACACAAG 57.865 47.619 5.31 0.00 33.43 3.16
1625 2611 2.091541 ACAAACACAGTGGACACAAGG 58.908 47.619 5.31 0.00 0.00 3.61
1626 2612 2.091541 CAAACACAGTGGACACAAGGT 58.908 47.619 5.31 0.00 0.00 3.50
1627 2613 2.491693 CAAACACAGTGGACACAAGGTT 59.508 45.455 5.31 3.04 0.00 3.50
1628 2614 3.637911 AACACAGTGGACACAAGGTTA 57.362 42.857 5.31 0.00 0.00 2.85
1629 2615 3.194005 ACACAGTGGACACAAGGTTAG 57.806 47.619 5.31 0.00 0.00 2.34
1630 2616 2.769663 ACACAGTGGACACAAGGTTAGA 59.230 45.455 5.31 0.00 0.00 2.10
1631 2617 3.391296 ACACAGTGGACACAAGGTTAGAT 59.609 43.478 5.31 0.00 0.00 1.98
1632 2618 3.748048 CACAGTGGACACAAGGTTAGATG 59.252 47.826 5.14 0.00 0.00 2.90
1633 2619 3.391296 ACAGTGGACACAAGGTTAGATGT 59.609 43.478 5.14 0.00 0.00 3.06
1661 2647 9.056005 ACATAATTATGTCACATTTAGATGCGT 57.944 29.630 22.70 0.00 42.96 5.24
1662 2648 9.533983 CATAATTATGTCACATTTAGATGCGTC 57.466 33.333 16.03 0.00 36.72 5.19
1663 2649 5.984233 TTATGTCACATTTAGATGCGTCC 57.016 39.130 0.00 0.00 36.72 4.79
1664 2650 3.610040 TGTCACATTTAGATGCGTCCT 57.390 42.857 1.23 0.00 36.72 3.85
1665 2651 4.729227 TGTCACATTTAGATGCGTCCTA 57.271 40.909 1.23 0.00 36.72 2.94
1666 2652 4.682787 TGTCACATTTAGATGCGTCCTAG 58.317 43.478 1.23 0.00 36.72 3.02
1667 2653 4.401202 TGTCACATTTAGATGCGTCCTAGA 59.599 41.667 1.23 0.00 36.72 2.43
1668 2654 5.069119 TGTCACATTTAGATGCGTCCTAGAT 59.931 40.000 1.23 0.00 36.72 1.98
1669 2655 6.264518 TGTCACATTTAGATGCGTCCTAGATA 59.735 38.462 1.23 0.00 36.72 1.98
1670 2656 6.804295 GTCACATTTAGATGCGTCCTAGATAG 59.196 42.308 1.23 0.00 36.72 2.08
1671 2657 6.715264 TCACATTTAGATGCGTCCTAGATAGA 59.285 38.462 1.23 0.00 36.72 1.98
1672 2658 6.804295 CACATTTAGATGCGTCCTAGATAGAC 59.196 42.308 1.23 0.00 36.72 2.59
1673 2659 5.961396 TTTAGATGCGTCCTAGATAGACC 57.039 43.478 1.23 0.00 0.00 3.85
1674 2660 2.797786 AGATGCGTCCTAGATAGACCC 58.202 52.381 1.23 0.00 0.00 4.46
1675 2661 2.377193 AGATGCGTCCTAGATAGACCCT 59.623 50.000 1.23 0.00 0.00 4.34
1676 2662 3.587951 AGATGCGTCCTAGATAGACCCTA 59.412 47.826 1.23 0.00 0.00 3.53
1677 2663 3.870538 TGCGTCCTAGATAGACCCTAA 57.129 47.619 0.00 0.00 0.00 2.69
1678 2664 4.174704 TGCGTCCTAGATAGACCCTAAA 57.825 45.455 0.00 0.00 0.00 1.85
1679 2665 4.737578 TGCGTCCTAGATAGACCCTAAAT 58.262 43.478 0.00 0.00 0.00 1.40
1680 2666 5.884322 TGCGTCCTAGATAGACCCTAAATA 58.116 41.667 0.00 0.00 0.00 1.40
1681 2667 6.491383 TGCGTCCTAGATAGACCCTAAATAT 58.509 40.000 0.00 0.00 0.00 1.28
1682 2668 7.636579 TGCGTCCTAGATAGACCCTAAATATA 58.363 38.462 0.00 0.00 0.00 0.86
1683 2669 8.280084 TGCGTCCTAGATAGACCCTAAATATAT 58.720 37.037 0.00 0.00 0.00 0.86
1713 2699 7.816640 TGTAAGTTTGAGTTATTTGATGAGGC 58.183 34.615 0.00 0.00 0.00 4.70
1714 2700 6.899393 AAGTTTGAGTTATTTGATGAGGCA 57.101 33.333 0.00 0.00 0.00 4.75
1715 2701 7.472334 AAGTTTGAGTTATTTGATGAGGCAT 57.528 32.000 0.00 0.00 0.00 4.40
1716 2702 7.093322 AGTTTGAGTTATTTGATGAGGCATC 57.907 36.000 0.00 0.00 40.88 3.91
1717 2703 5.739752 TTGAGTTATTTGATGAGGCATCG 57.260 39.130 0.00 0.00 43.14 3.84
1720 2706 5.028549 AGTTATTTGATGAGGCATCGTCT 57.971 39.130 20.29 4.29 43.14 4.18
1721 2707 5.431765 AGTTATTTGATGAGGCATCGTCTT 58.568 37.500 20.29 8.81 43.14 3.01
1725 2711 2.382882 TGATGAGGCATCGTCTTCTCT 58.617 47.619 20.29 0.00 43.14 3.10
1757 2743 4.024438 CGTAGTACCTTCACGTTCGTATG 58.976 47.826 0.00 0.00 0.00 2.39
1763 2749 5.125100 ACCTTCACGTTCGTATGTCTTAA 57.875 39.130 0.00 0.00 0.00 1.85
1801 2787 5.379187 TCCATGCATAGAACATTGTGCTAT 58.621 37.500 11.02 11.02 34.94 2.97
1802 2788 6.532826 TCCATGCATAGAACATTGTGCTATA 58.467 36.000 15.58 3.78 32.48 1.31
1803 2789 6.997476 TCCATGCATAGAACATTGTGCTATAA 59.003 34.615 15.58 8.82 32.48 0.98
1804 2790 7.666804 TCCATGCATAGAACATTGTGCTATAAT 59.333 33.333 15.58 10.43 32.48 1.28
1805 2791 8.949177 CCATGCATAGAACATTGTGCTATAATA 58.051 33.333 15.58 7.01 32.48 0.98
1806 2792 9.764870 CATGCATAGAACATTGTGCTATAATAC 57.235 33.333 15.58 7.77 32.48 1.89
1807 2793 9.730705 ATGCATAGAACATTGTGCTATAATACT 57.269 29.630 15.58 0.00 32.48 2.12
1808 2794 9.208022 TGCATAGAACATTGTGCTATAATACTC 57.792 33.333 15.58 4.15 32.48 2.59
1809 2795 9.429359 GCATAGAACATTGTGCTATAATACTCT 57.571 33.333 15.58 2.00 32.48 3.24
1916 3129 1.751351 GGCTAGCCCAAGGATGTTTTC 59.249 52.381 24.19 0.00 0.00 2.29
1917 3130 2.621668 GGCTAGCCCAAGGATGTTTTCT 60.622 50.000 24.19 0.00 0.00 2.52
1924 3137 3.308530 CCAAGGATGTTTTCTCGTTTGC 58.691 45.455 0.00 0.00 0.00 3.68
1926 3139 4.222114 CAAGGATGTTTTCTCGTTTGCTC 58.778 43.478 0.00 0.00 0.00 4.26
1938 3151 4.273480 TCTCGTTTGCTCTTCTTCTTTTGG 59.727 41.667 0.00 0.00 0.00 3.28
1975 3188 3.144506 ACATCCTGAAGCTTCTTGTGTG 58.855 45.455 26.09 18.86 0.00 3.82
2029 3242 5.530915 TGATTGTTCGAGGAAAGAATGTGTT 59.469 36.000 0.00 0.00 0.00 3.32
2030 3243 6.708502 TGATTGTTCGAGGAAAGAATGTGTTA 59.291 34.615 0.00 0.00 0.00 2.41
2031 3244 5.917541 TGTTCGAGGAAAGAATGTGTTAC 57.082 39.130 0.00 0.00 0.00 2.50
2032 3245 5.607477 TGTTCGAGGAAAGAATGTGTTACT 58.393 37.500 0.00 0.00 0.00 2.24
2033 3246 5.694910 TGTTCGAGGAAAGAATGTGTTACTC 59.305 40.000 0.00 0.00 0.00 2.59
2034 3247 4.817517 TCGAGGAAAGAATGTGTTACTCC 58.182 43.478 0.00 0.00 0.00 3.85
2035 3248 3.933332 CGAGGAAAGAATGTGTTACTCCC 59.067 47.826 0.00 0.00 0.00 4.30
2036 3249 4.322801 CGAGGAAAGAATGTGTTACTCCCT 60.323 45.833 0.00 0.00 0.00 4.20
2037 3250 5.167303 AGGAAAGAATGTGTTACTCCCTC 57.833 43.478 0.00 0.00 0.00 4.30
2038 3251 4.019231 AGGAAAGAATGTGTTACTCCCTCC 60.019 45.833 0.00 0.00 0.00 4.30
2039 3252 4.263331 GGAAAGAATGTGTTACTCCCTCCA 60.263 45.833 0.00 0.00 0.00 3.86
2040 3253 4.993705 AAGAATGTGTTACTCCCTCCAA 57.006 40.909 0.00 0.00 0.00 3.53
2041 3254 5.520748 AAGAATGTGTTACTCCCTCCAAT 57.479 39.130 0.00 0.00 0.00 3.16
2042 3255 5.104259 AGAATGTGTTACTCCCTCCAATC 57.896 43.478 0.00 0.00 0.00 2.67
2043 3256 3.933861 ATGTGTTACTCCCTCCAATCC 57.066 47.619 0.00 0.00 0.00 3.01
2044 3257 2.626785 TGTGTTACTCCCTCCAATCCA 58.373 47.619 0.00 0.00 0.00 3.41
2045 3258 2.983192 TGTGTTACTCCCTCCAATCCAA 59.017 45.455 0.00 0.00 0.00 3.53
2046 3259 3.396276 TGTGTTACTCCCTCCAATCCAAA 59.604 43.478 0.00 0.00 0.00 3.28
2047 3260 4.044065 TGTGTTACTCCCTCCAATCCAAAT 59.956 41.667 0.00 0.00 0.00 2.32
2048 3261 5.251932 TGTGTTACTCCCTCCAATCCAAATA 59.748 40.000 0.00 0.00 0.00 1.40
2049 3262 5.589050 GTGTTACTCCCTCCAATCCAAATAC 59.411 44.000 0.00 0.00 0.00 1.89
2050 3263 5.491078 TGTTACTCCCTCCAATCCAAATACT 59.509 40.000 0.00 0.00 0.00 2.12
2051 3264 6.674861 TGTTACTCCCTCCAATCCAAATACTA 59.325 38.462 0.00 0.00 0.00 1.82
2052 3265 7.183112 TGTTACTCCCTCCAATCCAAATACTAA 59.817 37.037 0.00 0.00 0.00 2.24
2053 3266 6.652205 ACTCCCTCCAATCCAAATACTAAA 57.348 37.500 0.00 0.00 0.00 1.85
2054 3267 7.039722 ACTCCCTCCAATCCAAATACTAAAA 57.960 36.000 0.00 0.00 0.00 1.52
2055 3268 7.652554 ACTCCCTCCAATCCAAATACTAAAAT 58.347 34.615 0.00 0.00 0.00 1.82
2056 3269 7.780271 ACTCCCTCCAATCCAAATACTAAAATC 59.220 37.037 0.00 0.00 0.00 2.17
2057 3270 7.647827 TCCCTCCAATCCAAATACTAAAATCA 58.352 34.615 0.00 0.00 0.00 2.57
2058 3271 7.559897 TCCCTCCAATCCAAATACTAAAATCAC 59.440 37.037 0.00 0.00 0.00 3.06
2059 3272 7.417612 CCTCCAATCCAAATACTAAAATCACG 58.582 38.462 0.00 0.00 0.00 4.35
2060 3273 7.282224 CCTCCAATCCAAATACTAAAATCACGA 59.718 37.037 0.00 0.00 0.00 4.35
2061 3274 7.981142 TCCAATCCAAATACTAAAATCACGAC 58.019 34.615 0.00 0.00 0.00 4.34
2062 3275 7.608376 TCCAATCCAAATACTAAAATCACGACA 59.392 33.333 0.00 0.00 0.00 4.35
2063 3276 7.696453 CCAATCCAAATACTAAAATCACGACAC 59.304 37.037 0.00 0.00 0.00 3.67
2064 3277 8.450964 CAATCCAAATACTAAAATCACGACACT 58.549 33.333 0.00 0.00 0.00 3.55
2065 3278 7.972832 TCCAAATACTAAAATCACGACACTT 57.027 32.000 0.00 0.00 0.00 3.16
2066 3279 9.661563 ATCCAAATACTAAAATCACGACACTTA 57.338 29.630 0.00 0.00 0.00 2.24
2067 3280 9.661563 TCCAAATACTAAAATCACGACACTTAT 57.338 29.630 0.00 0.00 0.00 1.73
2073 3286 8.385898 ACTAAAATCACGACACTTATTTTGGA 57.614 30.769 8.95 0.00 34.97 3.53
2074 3287 9.010029 ACTAAAATCACGACACTTATTTTGGAT 57.990 29.630 8.95 0.00 34.97 3.41
2075 3288 9.490663 CTAAAATCACGACACTTATTTTGGATC 57.509 33.333 0.00 0.00 33.91 3.36
2076 3289 7.447374 AAATCACGACACTTATTTTGGATCA 57.553 32.000 0.00 0.00 0.00 2.92
2077 3290 6.668541 ATCACGACACTTATTTTGGATCAG 57.331 37.500 0.00 0.00 0.00 2.90
2078 3291 5.789521 TCACGACACTTATTTTGGATCAGA 58.210 37.500 0.00 0.00 0.00 3.27
2079 3292 5.869344 TCACGACACTTATTTTGGATCAGAG 59.131 40.000 0.00 0.00 0.00 3.35
2080 3293 5.063944 CACGACACTTATTTTGGATCAGAGG 59.936 44.000 0.00 0.00 0.00 3.69
2081 3294 4.572389 CGACACTTATTTTGGATCAGAGGG 59.428 45.833 0.00 0.00 0.00 4.30
2082 3295 5.626809 CGACACTTATTTTGGATCAGAGGGA 60.627 44.000 0.00 0.00 0.00 4.20
2083 3296 5.749462 ACACTTATTTTGGATCAGAGGGAG 58.251 41.667 0.00 0.00 0.00 4.30
2084 3297 5.251700 ACACTTATTTTGGATCAGAGGGAGT 59.748 40.000 0.00 0.00 0.00 3.85
2085 3298 6.443849 ACACTTATTTTGGATCAGAGGGAGTA 59.556 38.462 0.00 0.00 0.00 2.59
2086 3299 6.763610 CACTTATTTTGGATCAGAGGGAGTAC 59.236 42.308 0.00 0.00 0.00 2.73
2087 3300 6.443849 ACTTATTTTGGATCAGAGGGAGTACA 59.556 38.462 0.00 0.00 0.00 2.90
2088 3301 5.983333 ATTTTGGATCAGAGGGAGTACAT 57.017 39.130 0.00 0.00 0.00 2.29
2089 3302 4.760530 TTTGGATCAGAGGGAGTACATG 57.239 45.455 0.00 0.00 0.00 3.21
2090 3303 3.404869 TGGATCAGAGGGAGTACATGT 57.595 47.619 2.69 2.69 0.00 3.21
2091 3304 3.724478 TGGATCAGAGGGAGTACATGTT 58.276 45.455 2.30 0.00 0.00 2.71
2092 3305 4.104086 TGGATCAGAGGGAGTACATGTTT 58.896 43.478 2.30 0.00 0.00 2.83
2093 3306 5.277250 TGGATCAGAGGGAGTACATGTTTA 58.723 41.667 2.30 0.00 0.00 2.01
2094 3307 5.905331 TGGATCAGAGGGAGTACATGTTTAT 59.095 40.000 2.30 0.00 0.00 1.40
2095 3308 6.386927 TGGATCAGAGGGAGTACATGTTTATT 59.613 38.462 2.30 0.00 0.00 1.40
2096 3309 7.092444 TGGATCAGAGGGAGTACATGTTTATTT 60.092 37.037 2.30 0.00 0.00 1.40
2097 3310 7.442666 GGATCAGAGGGAGTACATGTTTATTTC 59.557 40.741 2.30 0.00 0.00 2.17
2098 3311 7.252612 TCAGAGGGAGTACATGTTTATTTCA 57.747 36.000 2.30 0.00 0.00 2.69
2099 3312 7.861629 TCAGAGGGAGTACATGTTTATTTCAT 58.138 34.615 2.30 0.00 0.00 2.57
2100 3313 8.988060 TCAGAGGGAGTACATGTTTATTTCATA 58.012 33.333 2.30 0.00 0.00 2.15
2101 3314 9.046296 CAGAGGGAGTACATGTTTATTTCATAC 57.954 37.037 2.30 0.00 0.00 2.39
2102 3315 8.993424 AGAGGGAGTACATGTTTATTTCATACT 58.007 33.333 2.30 0.00 0.00 2.12
2103 3316 8.964476 AGGGAGTACATGTTTATTTCATACTG 57.036 34.615 2.30 0.00 0.00 2.74
2104 3317 8.548877 AGGGAGTACATGTTTATTTCATACTGT 58.451 33.333 2.30 0.00 0.00 3.55
2105 3318 8.827677 GGGAGTACATGTTTATTTCATACTGTC 58.172 37.037 2.30 0.00 0.00 3.51
2106 3319 9.601217 GGAGTACATGTTTATTTCATACTGTCT 57.399 33.333 2.30 0.00 0.00 3.41
2126 3339 9.862371 ACTGTCTCTTATGTCTTTATTACTGTG 57.138 33.333 0.00 0.00 0.00 3.66
2138 3351 9.747293 GTCTTTATTACTGTGAGTTATACCTCC 57.253 37.037 0.00 0.00 0.00 4.30
2139 3352 9.483489 TCTTTATTACTGTGAGTTATACCTCCA 57.517 33.333 0.00 0.00 0.00 3.86
2141 3354 9.880157 TTTATTACTGTGAGTTATACCTCCAAC 57.120 33.333 0.00 0.00 0.00 3.77
2142 3355 6.921486 TTACTGTGAGTTATACCTCCAACA 57.079 37.500 0.00 0.00 0.00 3.33
2143 3356 5.818678 ACTGTGAGTTATACCTCCAACAA 57.181 39.130 0.00 0.00 0.00 2.83
2144 3357 6.182507 ACTGTGAGTTATACCTCCAACAAA 57.817 37.500 0.00 0.00 0.00 2.83
2145 3358 5.995897 ACTGTGAGTTATACCTCCAACAAAC 59.004 40.000 0.00 0.00 0.00 2.93
2146 3359 5.931294 TGTGAGTTATACCTCCAACAAACA 58.069 37.500 0.00 0.00 0.00 2.83
2147 3360 6.358178 TGTGAGTTATACCTCCAACAAACAA 58.642 36.000 0.00 0.00 0.00 2.83
2148 3361 6.829298 TGTGAGTTATACCTCCAACAAACAAA 59.171 34.615 0.00 0.00 0.00 2.83
2149 3362 7.339721 TGTGAGTTATACCTCCAACAAACAAAA 59.660 33.333 0.00 0.00 0.00 2.44
2150 3363 8.192110 GTGAGTTATACCTCCAACAAACAAAAA 58.808 33.333 0.00 0.00 0.00 1.94
2176 3389 9.865321 AAACAATATTTGAAGGACATCATCTTG 57.135 29.630 0.00 0.00 0.00 3.02
2177 3390 8.812513 ACAATATTTGAAGGACATCATCTTGA 57.187 30.769 0.00 0.00 0.00 3.02
2178 3391 9.246670 ACAATATTTGAAGGACATCATCTTGAA 57.753 29.630 0.00 0.00 0.00 2.69
2183 3396 7.764141 TTGAAGGACATCATCTTGAATTTCA 57.236 32.000 0.00 0.00 0.00 2.69
2184 3397 7.949690 TGAAGGACATCATCTTGAATTTCAT 57.050 32.000 0.00 0.00 0.00 2.57
2185 3398 8.357290 TGAAGGACATCATCTTGAATTTCATT 57.643 30.769 0.00 0.00 0.00 2.57
2186 3399 8.464404 TGAAGGACATCATCTTGAATTTCATTC 58.536 33.333 0.00 0.00 39.70 2.67
2187 3400 8.591114 AAGGACATCATCTTGAATTTCATTCT 57.409 30.769 0.00 0.00 39.96 2.40
2188 3401 8.223177 AGGACATCATCTTGAATTTCATTCTC 57.777 34.615 0.00 0.00 39.96 2.87
2189 3402 8.053963 AGGACATCATCTTGAATTTCATTCTCT 58.946 33.333 0.00 0.00 39.96 3.10
2190 3403 8.129840 GGACATCATCTTGAATTTCATTCTCTG 58.870 37.037 0.00 0.00 39.96 3.35
2191 3404 8.803397 ACATCATCTTGAATTTCATTCTCTGA 57.197 30.769 0.00 1.05 39.96 3.27
2192 3405 9.239551 ACATCATCTTGAATTTCATTCTCTGAA 57.760 29.630 0.00 0.00 42.15 3.02
2203 3416 6.506500 TTCATTCTCTGAAAAGGATTGAGC 57.493 37.500 0.00 0.00 40.92 4.26
2204 3417 4.946157 TCATTCTCTGAAAAGGATTGAGCC 59.054 41.667 0.00 0.00 0.00 4.70
2205 3418 4.371624 TTCTCTGAAAAGGATTGAGCCA 57.628 40.909 0.00 0.00 0.00 4.75
2206 3419 4.371624 TCTCTGAAAAGGATTGAGCCAA 57.628 40.909 0.00 0.00 0.00 4.52
2207 3420 4.330250 TCTCTGAAAAGGATTGAGCCAAG 58.670 43.478 0.00 0.00 0.00 3.61
2208 3421 3.424703 TCTGAAAAGGATTGAGCCAAGG 58.575 45.455 0.00 0.00 0.00 3.61
2209 3422 3.074390 TCTGAAAAGGATTGAGCCAAGGA 59.926 43.478 0.00 0.00 0.00 3.36
2210 3423 3.424703 TGAAAAGGATTGAGCCAAGGAG 58.575 45.455 0.00 0.00 0.00 3.69
2211 3424 2.521547 AAAGGATTGAGCCAAGGAGG 57.478 50.000 0.00 0.00 41.84 4.30
2212 3425 1.673767 AAGGATTGAGCCAAGGAGGA 58.326 50.000 0.00 0.00 41.22 3.71
2213 3426 1.673767 AGGATTGAGCCAAGGAGGAA 58.326 50.000 0.00 0.00 41.22 3.36
2214 3427 1.995542 AGGATTGAGCCAAGGAGGAAA 59.004 47.619 0.00 0.00 41.22 3.13
2215 3428 2.025510 AGGATTGAGCCAAGGAGGAAAG 60.026 50.000 0.00 0.00 41.22 2.62
2216 3429 2.291217 GGATTGAGCCAAGGAGGAAAGT 60.291 50.000 0.00 0.00 41.22 2.66
2217 3430 3.425659 GATTGAGCCAAGGAGGAAAGTT 58.574 45.455 0.00 0.00 41.22 2.66
2218 3431 2.276732 TGAGCCAAGGAGGAAAGTTG 57.723 50.000 0.00 0.00 41.22 3.16
2219 3432 0.884514 GAGCCAAGGAGGAAAGTTGC 59.115 55.000 0.00 0.00 41.22 4.17
2220 3433 0.890996 AGCCAAGGAGGAAAGTTGCG 60.891 55.000 0.00 0.00 41.22 4.85
2221 3434 0.889186 GCCAAGGAGGAAAGTTGCGA 60.889 55.000 0.00 0.00 41.22 5.10
2222 3435 1.160137 CCAAGGAGGAAAGTTGCGAG 58.840 55.000 0.00 0.00 41.22 5.03
2223 3436 1.270839 CCAAGGAGGAAAGTTGCGAGA 60.271 52.381 0.00 0.00 41.22 4.04
2224 3437 1.801178 CAAGGAGGAAAGTTGCGAGAC 59.199 52.381 0.00 0.00 0.00 3.36
2225 3438 1.343069 AGGAGGAAAGTTGCGAGACT 58.657 50.000 0.00 0.00 0.00 3.24
2226 3439 1.694696 AGGAGGAAAGTTGCGAGACTT 59.305 47.619 0.00 0.00 41.44 3.01
2227 3440 1.801178 GGAGGAAAGTTGCGAGACTTG 59.199 52.381 4.86 0.00 39.68 3.16
2228 3441 1.801178 GAGGAAAGTTGCGAGACTTGG 59.199 52.381 4.86 0.00 39.68 3.61
2229 3442 1.141053 AGGAAAGTTGCGAGACTTGGT 59.859 47.619 4.86 0.00 39.68 3.67
2230 3443 2.367567 AGGAAAGTTGCGAGACTTGGTA 59.632 45.455 4.86 0.00 39.68 3.25
2231 3444 3.135994 GGAAAGTTGCGAGACTTGGTAA 58.864 45.455 4.86 0.00 39.68 2.85
2232 3445 3.186613 GGAAAGTTGCGAGACTTGGTAAG 59.813 47.826 4.86 0.00 39.68 2.34
2233 3446 2.457366 AGTTGCGAGACTTGGTAAGG 57.543 50.000 0.00 0.00 0.00 2.69
2234 3447 1.692519 AGTTGCGAGACTTGGTAAGGT 59.307 47.619 0.00 0.00 0.00 3.50
2235 3448 2.895404 AGTTGCGAGACTTGGTAAGGTA 59.105 45.455 0.00 0.00 0.00 3.08
2236 3449 3.322828 AGTTGCGAGACTTGGTAAGGTAA 59.677 43.478 0.00 0.00 0.00 2.85
2237 3450 3.587797 TGCGAGACTTGGTAAGGTAAG 57.412 47.619 0.00 0.00 0.00 2.34
2238 3451 3.159472 TGCGAGACTTGGTAAGGTAAGA 58.841 45.455 0.00 0.00 0.00 2.10
2239 3452 3.767673 TGCGAGACTTGGTAAGGTAAGAT 59.232 43.478 0.00 0.00 0.00 2.40
2240 3453 4.113354 GCGAGACTTGGTAAGGTAAGATG 58.887 47.826 0.00 0.00 0.00 2.90
2241 3454 4.381718 GCGAGACTTGGTAAGGTAAGATGT 60.382 45.833 0.00 0.00 0.00 3.06
2242 3455 5.341617 CGAGACTTGGTAAGGTAAGATGTC 58.658 45.833 0.00 0.00 0.00 3.06
2243 3456 5.105877 CGAGACTTGGTAAGGTAAGATGTCA 60.106 44.000 0.00 0.00 0.00 3.58
2244 3457 6.405953 CGAGACTTGGTAAGGTAAGATGTCAT 60.406 42.308 0.00 0.00 0.00 3.06
2245 3458 7.259088 AGACTTGGTAAGGTAAGATGTCATT 57.741 36.000 0.00 0.00 0.00 2.57
2246 3459 7.106239 AGACTTGGTAAGGTAAGATGTCATTG 58.894 38.462 0.00 0.00 0.00 2.82
2252 3465 6.201044 GGTAAGGTAAGATGTCATTGATGTCG 59.799 42.308 0.00 0.00 0.00 4.35
2259 3472 4.872691 AGATGTCATTGATGTCGAAGTTCC 59.127 41.667 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.391006 GGTTTATTCCTTCTTTTCTTGGTTTTT 57.609 29.630 0.00 0.00 0.00 1.94
62 63 6.321848 TGAACCGGTTTATTCCTTCTTTTC 57.678 37.500 23.22 3.55 0.00 2.29
64 65 4.765339 CCTGAACCGGTTTATTCCTTCTTT 59.235 41.667 23.22 0.00 0.00 2.52
66 67 3.308188 CCCTGAACCGGTTTATTCCTTCT 60.308 47.826 23.22 0.00 0.00 2.85
78 79 3.478540 GGAATCTTCCCTGAACCGG 57.521 57.895 0.00 0.00 41.62 5.28
104 105 2.963599 ACTGGTTTTTATCCCACGGT 57.036 45.000 0.00 0.00 0.00 4.83
128 129 4.065281 GCGTACACCTGAGCCGGT 62.065 66.667 1.90 0.00 37.93 5.28
139 140 3.818121 AAGCAACCTGGCGCGTACA 62.818 57.895 8.43 6.73 39.27 2.90
144 145 1.955663 CCAAAAAGCAACCTGGCGC 60.956 57.895 0.00 0.00 39.27 6.53
156 157 1.508808 GGCGCGTAGGTCACCAAAAA 61.509 55.000 8.43 0.00 0.00 1.94
178 179 2.283532 CACCAAAATCGGCCCCCA 60.284 61.111 0.00 0.00 0.00 4.96
179 180 1.476845 AAACACCAAAATCGGCCCCC 61.477 55.000 0.00 0.00 0.00 5.40
184 186 4.568152 AGAGTCAAAACACCAAAATCGG 57.432 40.909 0.00 0.00 0.00 4.18
249 927 3.466714 AAAAAGGGCCGGATCCAAA 57.533 47.368 13.41 0.00 0.00 3.28
273 951 1.456892 TACCGCCATCGACCCTGAT 60.457 57.895 0.00 0.00 38.10 2.90
276 954 2.838225 CCTACCGCCATCGACCCT 60.838 66.667 0.00 0.00 38.10 4.34
286 964 4.395542 CAGTAGACTGATATACCCTACCGC 59.604 50.000 3.45 0.00 46.59 5.68
287 965 4.395542 GCAGTAGACTGATATACCCTACCG 59.604 50.000 13.87 0.00 46.59 4.02
292 970 4.021016 CCTTGGCAGTAGACTGATATACCC 60.021 50.000 13.87 4.57 46.59 3.69
293 971 4.833380 TCCTTGGCAGTAGACTGATATACC 59.167 45.833 13.87 5.25 46.59 2.73
294 972 5.279056 GGTCCTTGGCAGTAGACTGATATAC 60.279 48.000 13.87 3.49 46.59 1.47
295 973 4.833380 GGTCCTTGGCAGTAGACTGATATA 59.167 45.833 13.87 0.00 46.59 0.86
296 974 3.643792 GGTCCTTGGCAGTAGACTGATAT 59.356 47.826 13.87 0.00 46.59 1.63
300 978 0.250513 GGGTCCTTGGCAGTAGACTG 59.749 60.000 5.26 5.26 46.40 3.51
301 979 0.117340 AGGGTCCTTGGCAGTAGACT 59.883 55.000 11.71 0.00 0.00 3.24
302 980 0.250513 CAGGGTCCTTGGCAGTAGAC 59.749 60.000 0.00 5.38 0.00 2.59
303 981 0.116342 TCAGGGTCCTTGGCAGTAGA 59.884 55.000 0.38 0.00 0.00 2.59
308 988 3.089838 CCATCAGGGTCCTTGGCA 58.910 61.111 0.38 0.00 0.00 4.92
323 1003 4.018490 TGACGTAGATAAGTTGCCTACCA 58.982 43.478 0.00 3.02 31.55 3.25
329 1009 5.512082 CACTACACTGACGTAGATAAGTTGC 59.488 44.000 13.34 0.00 41.21 4.17
339 1019 0.242825 GGCTGCACTACACTGACGTA 59.757 55.000 0.50 0.00 0.00 3.57
356 1036 0.468648 AGCCTATTTGACGGTAGGGC 59.531 55.000 0.00 0.00 38.31 5.19
358 1038 2.167693 TGACAGCCTATTTGACGGTAGG 59.832 50.000 0.00 0.00 40.37 3.18
385 1065 2.173669 CGGCGGTAGGATTGCACAG 61.174 63.158 0.00 0.00 0.00 3.66
413 1093 3.671008 TCAAATACTGCACACTACCGT 57.329 42.857 0.00 0.00 0.00 4.83
449 1137 2.434336 AGAGGTGCATGCCTTATCGTAA 59.566 45.455 16.68 0.00 39.34 3.18
450 1138 2.039418 AGAGGTGCATGCCTTATCGTA 58.961 47.619 16.68 0.00 39.34 3.43
451 1139 0.833287 AGAGGTGCATGCCTTATCGT 59.167 50.000 16.68 2.27 39.34 3.73
452 1140 2.408050 GTAGAGGTGCATGCCTTATCG 58.592 52.381 16.68 0.00 39.34 2.92
453 1141 2.772287 GGTAGAGGTGCATGCCTTATC 58.228 52.381 16.68 8.15 39.34 1.75
454 1142 1.070758 CGGTAGAGGTGCATGCCTTAT 59.929 52.381 16.68 2.97 39.34 1.73
457 1145 2.903357 CGGTAGAGGTGCATGCCT 59.097 61.111 16.68 5.58 42.53 4.75
465 1153 3.400054 GCCCTTGGCGGTAGAGGT 61.400 66.667 0.00 0.00 39.62 3.85
485 1173 8.107399 CGATAGGGTATAATAATCTATCGCCA 57.893 38.462 14.97 0.00 46.51 5.69
508 1196 1.140161 CCGCCGAGGTTAATGACGA 59.860 57.895 0.00 0.00 34.51 4.20
530 1218 4.625972 TTTTTGAGACGTGACCCTTTTC 57.374 40.909 0.00 0.00 0.00 2.29
550 1238 4.351874 TCTGACTCTGGTTCGGAATTTT 57.648 40.909 0.00 0.00 0.00 1.82
551 1239 4.223923 AGATCTGACTCTGGTTCGGAATTT 59.776 41.667 0.00 0.00 0.00 1.82
552 1240 3.772025 AGATCTGACTCTGGTTCGGAATT 59.228 43.478 0.00 0.00 0.00 2.17
556 1244 2.886081 CAAGATCTGACTCTGGTTCGG 58.114 52.381 0.00 0.00 0.00 4.30
561 1249 3.055963 AGTTGAGCAAGATCTGACTCTGG 60.056 47.826 20.27 0.00 32.54 3.86
565 1253 3.993081 CGAAAGTTGAGCAAGATCTGACT 59.007 43.478 0.00 0.00 0.00 3.41
575 1263 2.020720 TCCTTTTGCGAAAGTTGAGCA 58.979 42.857 22.22 1.85 40.53 4.26
595 1283 5.591877 GCCAGTCCTATTGAGATGTTTTGAT 59.408 40.000 0.00 0.00 0.00 2.57
604 1292 1.500474 CCCAGCCAGTCCTATTGAGA 58.500 55.000 0.00 0.00 0.00 3.27
606 1294 1.915228 GCCCAGCCAGTCCTATTGA 59.085 57.895 0.00 0.00 0.00 2.57
623 1311 2.889018 GTTACTGTAGCGGCCGGC 60.889 66.667 29.38 21.18 44.05 6.13
624 1312 2.345880 ATCGTTACTGTAGCGGCCGG 62.346 60.000 29.38 12.50 33.03 6.13
642 1330 1.997606 CCGGAAAAGAAACGTAGCGAT 59.002 47.619 0.00 0.00 0.00 4.58
644 1332 0.179233 GCCGGAAAAGAAACGTAGCG 60.179 55.000 5.05 0.00 0.00 4.26
650 1338 0.382873 ACAACGGCCGGAAAAGAAAC 59.617 50.000 31.76 0.00 0.00 2.78
651 1339 1.104630 AACAACGGCCGGAAAAGAAA 58.895 45.000 31.76 0.00 0.00 2.52
653 1341 0.664224 GAAACAACGGCCGGAAAAGA 59.336 50.000 31.76 0.00 0.00 2.52
654 1342 0.666374 AGAAACAACGGCCGGAAAAG 59.334 50.000 31.76 16.01 0.00 2.27
657 1345 0.179040 AGAAGAAACAACGGCCGGAA 60.179 50.000 31.76 0.00 0.00 4.30
666 1354 2.105134 TCGGCCCAACTAGAAGAAACAA 59.895 45.455 0.00 0.00 0.00 2.83
687 1640 2.363925 GGACGTCCCTACCTGGCT 60.364 66.667 24.75 0.00 0.00 4.75
724 1686 1.202417 GGAGCTGCTATGTGACGCTAA 60.202 52.381 0.15 0.00 0.00 3.09
725 1687 0.385751 GGAGCTGCTATGTGACGCTA 59.614 55.000 0.15 0.00 0.00 4.26
746 1708 0.175760 TTTCCGATGAGGGCGAGAAG 59.824 55.000 0.00 0.00 41.52 2.85
774 1743 3.505386 AGAGAAGAGGCAGAACAGAGAA 58.495 45.455 0.00 0.00 0.00 2.87
779 1748 1.337260 GCGAAGAGAAGAGGCAGAACA 60.337 52.381 0.00 0.00 0.00 3.18
787 1756 2.649331 TTAACCGGCGAAGAGAAGAG 57.351 50.000 9.30 0.00 0.00 2.85
788 1757 2.559668 TCTTTAACCGGCGAAGAGAAGA 59.440 45.455 9.30 8.44 0.00 2.87
876 1852 9.347934 GGACTTACTATTTATCACGATGAGATG 57.652 37.037 0.00 0.00 0.00 2.90
894 1870 2.108970 GGGAGTCGATTGGGACTTACT 58.891 52.381 0.00 0.00 46.85 2.24
895 1871 1.829222 TGGGAGTCGATTGGGACTTAC 59.171 52.381 0.00 0.00 46.85 2.34
896 1872 2.241281 TGGGAGTCGATTGGGACTTA 57.759 50.000 0.00 0.00 46.85 2.24
941 1918 2.474526 GCGTTGTGATCGTGGATTTCTG 60.475 50.000 0.00 0.00 0.00 3.02
977 1954 0.039764 TGTCTCTGGTGATCTCCGGT 59.960 55.000 19.65 0.00 35.51 5.28
987 1964 0.178891 ACCCCATGTCTGTCTCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
1150 2136 1.538047 ACGAACCTAAGCGTCTGGTA 58.462 50.000 0.00 0.00 35.59 3.25
1151 2137 2.348665 ACGAACCTAAGCGTCTGGT 58.651 52.632 0.00 0.00 35.59 4.00
1233 2219 0.242017 GAGCGCCTCTTGCACAATTT 59.758 50.000 2.29 0.00 41.33 1.82
1234 2220 0.607489 AGAGCGCCTCTTGCACAATT 60.607 50.000 2.29 0.00 37.60 2.32
1293 2279 1.189752 GTCCTGACTCCAGAGCATGA 58.810 55.000 0.00 0.00 43.02 3.07
1294 2280 0.177604 GGTCCTGACTCCAGAGCATG 59.822 60.000 0.00 0.00 43.02 4.06
1295 2281 1.326213 CGGTCCTGACTCCAGAGCAT 61.326 60.000 0.00 0.00 43.02 3.79
1343 2329 0.861837 CTTGACTGAAGCACCGTCAC 59.138 55.000 7.43 0.00 41.13 3.67
1344 2330 0.464036 ACTTGACTGAAGCACCGTCA 59.536 50.000 4.65 4.65 40.06 4.35
1345 2331 2.433868 TACTTGACTGAAGCACCGTC 57.566 50.000 0.00 0.00 34.68 4.79
1346 2332 2.755650 CTTACTTGACTGAAGCACCGT 58.244 47.619 0.00 0.00 34.68 4.83
1385 2371 1.274728 GCATGGATCGAGGACAGCTAT 59.725 52.381 0.00 0.00 0.00 2.97
1399 2385 1.550524 CCTATAGCTTAGCGGCATGGA 59.449 52.381 1.45 0.00 34.17 3.41
1423 2409 6.653320 TCCCAAATACCGCAGAATATTATCAC 59.347 38.462 0.00 0.00 0.00 3.06
1494 2480 7.542477 ACATCTAGACGTGAATTAGACAAACTG 59.458 37.037 0.00 0.00 0.00 3.16
1495 2481 7.603651 ACATCTAGACGTGAATTAGACAAACT 58.396 34.615 0.00 0.00 0.00 2.66
1496 2482 7.813852 ACATCTAGACGTGAATTAGACAAAC 57.186 36.000 0.00 0.00 0.00 2.93
1497 2483 8.827177 AAACATCTAGACGTGAATTAGACAAA 57.173 30.769 0.00 0.00 0.00 2.83
1498 2484 8.827177 AAAACATCTAGACGTGAATTAGACAA 57.173 30.769 0.00 0.00 0.00 3.18
1499 2485 8.827177 AAAAACATCTAGACGTGAATTAGACA 57.173 30.769 0.00 0.00 0.00 3.41
1521 2507 9.010029 GGAGTTTAGATGTGACATCCTTAAAAA 57.990 33.333 21.05 11.39 0.00 1.94
1522 2508 7.610305 GGGAGTTTAGATGTGACATCCTTAAAA 59.390 37.037 21.05 13.52 0.00 1.52
1523 2509 7.110155 GGGAGTTTAGATGTGACATCCTTAAA 58.890 38.462 21.05 16.39 0.00 1.52
1524 2510 6.214615 TGGGAGTTTAGATGTGACATCCTTAA 59.785 38.462 21.05 11.73 0.00 1.85
1525 2511 5.724370 TGGGAGTTTAGATGTGACATCCTTA 59.276 40.000 21.05 6.22 0.00 2.69
1526 2512 4.536090 TGGGAGTTTAGATGTGACATCCTT 59.464 41.667 21.05 7.22 0.00 3.36
1527 2513 4.104086 TGGGAGTTTAGATGTGACATCCT 58.896 43.478 21.05 11.37 0.00 3.24
1528 2514 4.487714 TGGGAGTTTAGATGTGACATCC 57.512 45.455 21.05 6.28 0.00 3.51
1529 2515 8.682936 ATTTATGGGAGTTTAGATGTGACATC 57.317 34.615 17.46 17.46 0.00 3.06
1531 2517 9.391006 GTTATTTATGGGAGTTTAGATGTGACA 57.609 33.333 0.00 0.00 0.00 3.58
1532 2518 9.391006 TGTTATTTATGGGAGTTTAGATGTGAC 57.609 33.333 0.00 0.00 0.00 3.67
1533 2519 9.391006 GTGTTATTTATGGGAGTTTAGATGTGA 57.609 33.333 0.00 0.00 0.00 3.58
1534 2520 9.173021 TGTGTTATTTATGGGAGTTTAGATGTG 57.827 33.333 0.00 0.00 0.00 3.21
1535 2521 9.747898 TTGTGTTATTTATGGGAGTTTAGATGT 57.252 29.630 0.00 0.00 0.00 3.06
1537 2523 9.747898 TGTTGTGTTATTTATGGGAGTTTAGAT 57.252 29.630 0.00 0.00 0.00 1.98
1538 2524 9.575868 TTGTTGTGTTATTTATGGGAGTTTAGA 57.424 29.630 0.00 0.00 0.00 2.10
1539 2525 9.620660 GTTGTTGTGTTATTTATGGGAGTTTAG 57.379 33.333 0.00 0.00 0.00 1.85
1540 2526 9.132923 TGTTGTTGTGTTATTTATGGGAGTTTA 57.867 29.630 0.00 0.00 0.00 2.01
1541 2527 8.012957 TGTTGTTGTGTTATTTATGGGAGTTT 57.987 30.769 0.00 0.00 0.00 2.66
1542 2528 7.589958 TGTTGTTGTGTTATTTATGGGAGTT 57.410 32.000 0.00 0.00 0.00 3.01
1543 2529 7.309744 CCATGTTGTTGTGTTATTTATGGGAGT 60.310 37.037 0.00 0.00 31.29 3.85
1544 2530 7.035004 CCATGTTGTTGTGTTATTTATGGGAG 58.965 38.462 0.00 0.00 31.29 4.30
1545 2531 6.721668 TCCATGTTGTTGTGTTATTTATGGGA 59.278 34.615 0.00 0.00 34.71 4.37
1546 2532 6.929625 TCCATGTTGTTGTGTTATTTATGGG 58.070 36.000 0.00 0.00 34.71 4.00
1604 2590 2.159393 CCTTGTGTCCACTGTGTTTGTG 60.159 50.000 7.08 0.00 35.39 3.33
1605 2591 2.091541 CCTTGTGTCCACTGTGTTTGT 58.908 47.619 7.08 0.00 0.00 2.83
1606 2592 2.091541 ACCTTGTGTCCACTGTGTTTG 58.908 47.619 7.08 0.00 0.00 2.93
1607 2593 2.507407 ACCTTGTGTCCACTGTGTTT 57.493 45.000 7.08 0.00 0.00 2.83
1608 2594 2.507407 AACCTTGTGTCCACTGTGTT 57.493 45.000 7.08 0.00 0.00 3.32
1609 2595 2.769663 TCTAACCTTGTGTCCACTGTGT 59.230 45.455 7.08 0.00 0.00 3.72
1610 2596 3.469008 TCTAACCTTGTGTCCACTGTG 57.531 47.619 0.00 0.00 0.00 3.66
1611 2597 3.391296 ACATCTAACCTTGTGTCCACTGT 59.609 43.478 0.00 0.00 0.00 3.55
1612 2598 3.748048 CACATCTAACCTTGTGTCCACTG 59.252 47.826 0.00 0.00 38.69 3.66
1613 2599 3.646162 TCACATCTAACCTTGTGTCCACT 59.354 43.478 3.30 0.00 42.95 4.00
1614 2600 3.746492 GTCACATCTAACCTTGTGTCCAC 59.254 47.826 3.30 0.00 42.95 4.02
1615 2601 3.389656 TGTCACATCTAACCTTGTGTCCA 59.610 43.478 3.30 0.12 42.95 4.02
1616 2602 4.002906 TGTCACATCTAACCTTGTGTCC 57.997 45.455 3.30 0.00 42.95 4.02
1617 2603 7.849804 ATTATGTCACATCTAACCTTGTGTC 57.150 36.000 0.00 0.00 42.95 3.67
1618 2604 9.905713 ATAATTATGTCACATCTAACCTTGTGT 57.094 29.630 0.00 0.00 42.95 3.72
1620 2606 9.905713 ACATAATTATGTCACATCTAACCTTGT 57.094 29.630 22.70 0.00 42.96 3.16
1634 2620 9.533983 CGCATCTAAATGTGACATAATTATGTC 57.466 33.333 36.06 36.06 44.56 3.06
1635 2621 9.056005 ACGCATCTAAATGTGACATAATTATGT 57.944 29.630 27.23 27.23 44.56 2.29
1636 2622 9.533983 GACGCATCTAAATGTGACATAATTATG 57.466 33.333 21.42 21.42 44.56 1.90
1637 2623 8.721478 GGACGCATCTAAATGTGACATAATTAT 58.279 33.333 0.00 0.00 44.56 1.28
1638 2624 7.931407 AGGACGCATCTAAATGTGACATAATTA 59.069 33.333 0.00 0.00 44.56 1.40
1639 2625 6.767902 AGGACGCATCTAAATGTGACATAATT 59.232 34.615 0.00 0.00 44.56 1.40
1640 2626 6.291377 AGGACGCATCTAAATGTGACATAAT 58.709 36.000 0.00 0.00 44.56 1.28
1641 2627 5.670485 AGGACGCATCTAAATGTGACATAA 58.330 37.500 0.00 0.00 44.56 1.90
1642 2628 5.276461 AGGACGCATCTAAATGTGACATA 57.724 39.130 0.00 0.00 44.56 2.29
1643 2629 4.142609 AGGACGCATCTAAATGTGACAT 57.857 40.909 6.00 0.00 44.56 3.06
1644 2630 3.610040 AGGACGCATCTAAATGTGACA 57.390 42.857 6.00 0.00 44.56 3.58
1645 2631 4.933330 TCTAGGACGCATCTAAATGTGAC 58.067 43.478 6.00 0.14 44.56 3.67
1646 2632 5.791336 ATCTAGGACGCATCTAAATGTGA 57.209 39.130 6.00 0.00 44.56 3.58
1647 2633 6.804295 GTCTATCTAGGACGCATCTAAATGTG 59.196 42.308 0.00 0.00 46.66 3.21
1648 2634 6.071840 GGTCTATCTAGGACGCATCTAAATGT 60.072 42.308 0.00 0.00 35.18 2.71
1649 2635 6.326375 GGTCTATCTAGGACGCATCTAAATG 58.674 44.000 0.00 0.00 34.82 2.32
1650 2636 5.419471 GGGTCTATCTAGGACGCATCTAAAT 59.581 44.000 8.99 0.00 43.21 1.40
1651 2637 4.765856 GGGTCTATCTAGGACGCATCTAAA 59.234 45.833 8.99 0.00 43.21 1.85
1652 2638 4.043059 AGGGTCTATCTAGGACGCATCTAA 59.957 45.833 14.21 0.00 45.16 2.10
1653 2639 3.587951 AGGGTCTATCTAGGACGCATCTA 59.412 47.826 14.21 0.00 45.16 1.98
1654 2640 2.377193 AGGGTCTATCTAGGACGCATCT 59.623 50.000 14.21 0.00 45.16 2.90
1655 2641 2.797786 AGGGTCTATCTAGGACGCATC 58.202 52.381 14.21 0.00 45.16 3.91
1656 2642 2.982339 AGGGTCTATCTAGGACGCAT 57.018 50.000 14.21 1.39 45.16 4.73
1657 2643 3.870538 TTAGGGTCTATCTAGGACGCA 57.129 47.619 14.21 2.08 45.16 5.24
1658 2644 8.694581 ATATATTTAGGGTCTATCTAGGACGC 57.305 38.462 6.58 6.58 43.77 5.19
1704 2690 2.762887 AGAGAAGACGATGCCTCATCAA 59.237 45.455 7.47 0.00 40.54 2.57
1705 2691 2.360483 GAGAGAAGACGATGCCTCATCA 59.640 50.000 7.47 0.00 40.54 3.07
1707 2693 1.686052 GGAGAGAAGACGATGCCTCAT 59.314 52.381 0.00 0.00 0.00 2.90
1708 2694 1.107114 GGAGAGAAGACGATGCCTCA 58.893 55.000 0.00 0.00 0.00 3.86
1711 2697 0.248702 GTCGGAGAGAAGACGATGCC 60.249 60.000 0.00 0.00 38.99 4.40
1712 2698 0.736053 AGTCGGAGAGAAGACGATGC 59.264 55.000 0.00 0.00 41.86 3.91
1713 2699 2.285083 AGAGTCGGAGAGAAGACGATG 58.715 52.381 0.00 0.00 41.86 3.84
1714 2700 2.557317 GAGAGTCGGAGAGAAGACGAT 58.443 52.381 0.00 0.00 41.86 3.73
1715 2701 1.405797 GGAGAGTCGGAGAGAAGACGA 60.406 57.143 0.00 0.00 41.86 4.20
1716 2702 1.011333 GGAGAGTCGGAGAGAAGACG 58.989 60.000 0.00 0.00 41.86 4.18
1717 2703 1.011333 CGGAGAGTCGGAGAGAAGAC 58.989 60.000 0.00 0.00 36.95 3.01
1720 2706 1.554160 ACTACGGAGAGTCGGAGAGAA 59.446 52.381 0.00 0.00 43.36 2.87
1721 2707 1.193323 ACTACGGAGAGTCGGAGAGA 58.807 55.000 0.00 0.00 43.36 3.10
1725 2711 1.198713 AGGTACTACGGAGAGTCGGA 58.801 55.000 0.00 0.00 36.02 4.55
1780 2766 9.764870 GTATTATAGCACAATGTTCTATGCATG 57.235 33.333 14.26 0.00 40.63 4.06
1902 3115 3.857010 GCAAACGAGAAAACATCCTTGGG 60.857 47.826 0.00 0.00 0.00 4.12
1905 3118 4.137543 AGAGCAAACGAGAAAACATCCTT 58.862 39.130 0.00 0.00 0.00 3.36
1916 3129 4.531332 CCAAAAGAAGAAGAGCAAACGAG 58.469 43.478 0.00 0.00 0.00 4.18
1917 3130 3.315191 CCCAAAAGAAGAAGAGCAAACGA 59.685 43.478 0.00 0.00 0.00 3.85
1924 3137 4.083057 GCTTACAGCCCAAAAGAAGAAGAG 60.083 45.833 0.00 0.00 34.48 2.85
1926 3139 3.823304 AGCTTACAGCCCAAAAGAAGAAG 59.177 43.478 0.00 0.00 43.77 2.85
1991 3204 6.030849 TCGAACAATCAACAAAAATCGTGTT 58.969 32.000 0.00 0.00 39.79 3.32
2029 3242 7.758820 TTTAGTATTTGGATTGGAGGGAGTA 57.241 36.000 0.00 0.00 0.00 2.59
2030 3243 6.652205 TTTAGTATTTGGATTGGAGGGAGT 57.348 37.500 0.00 0.00 0.00 3.85
2031 3244 7.779798 TGATTTTAGTATTTGGATTGGAGGGAG 59.220 37.037 0.00 0.00 0.00 4.30
2032 3245 7.559897 GTGATTTTAGTATTTGGATTGGAGGGA 59.440 37.037 0.00 0.00 0.00 4.20
2033 3246 7.468631 CGTGATTTTAGTATTTGGATTGGAGGG 60.469 40.741 0.00 0.00 0.00 4.30
2034 3247 7.282224 TCGTGATTTTAGTATTTGGATTGGAGG 59.718 37.037 0.00 0.00 0.00 4.30
2035 3248 8.122952 GTCGTGATTTTAGTATTTGGATTGGAG 58.877 37.037 0.00 0.00 0.00 3.86
2036 3249 7.608376 TGTCGTGATTTTAGTATTTGGATTGGA 59.392 33.333 0.00 0.00 0.00 3.53
2037 3250 7.696453 GTGTCGTGATTTTAGTATTTGGATTGG 59.304 37.037 0.00 0.00 0.00 3.16
2038 3251 8.450964 AGTGTCGTGATTTTAGTATTTGGATTG 58.549 33.333 0.00 0.00 0.00 2.67
2039 3252 8.561738 AGTGTCGTGATTTTAGTATTTGGATT 57.438 30.769 0.00 0.00 0.00 3.01
2040 3253 8.561738 AAGTGTCGTGATTTTAGTATTTGGAT 57.438 30.769 0.00 0.00 0.00 3.41
2041 3254 7.972832 AAGTGTCGTGATTTTAGTATTTGGA 57.027 32.000 0.00 0.00 0.00 3.53
2047 3260 9.491675 TCCAAAATAAGTGTCGTGATTTTAGTA 57.508 29.630 0.00 0.00 31.86 1.82
2048 3261 8.385898 TCCAAAATAAGTGTCGTGATTTTAGT 57.614 30.769 0.00 0.00 31.86 2.24
2049 3262 9.490663 GATCCAAAATAAGTGTCGTGATTTTAG 57.509 33.333 0.00 0.00 31.86 1.85
2050 3263 9.004717 TGATCCAAAATAAGTGTCGTGATTTTA 57.995 29.630 0.00 0.00 31.86 1.52
2051 3264 7.881142 TGATCCAAAATAAGTGTCGTGATTTT 58.119 30.769 0.00 0.00 32.97 1.82
2052 3265 7.390440 TCTGATCCAAAATAAGTGTCGTGATTT 59.610 33.333 0.00 0.00 0.00 2.17
2053 3266 6.878923 TCTGATCCAAAATAAGTGTCGTGATT 59.121 34.615 0.00 0.00 0.00 2.57
2054 3267 6.406370 TCTGATCCAAAATAAGTGTCGTGAT 58.594 36.000 0.00 0.00 0.00 3.06
2055 3268 5.789521 TCTGATCCAAAATAAGTGTCGTGA 58.210 37.500 0.00 0.00 0.00 4.35
2056 3269 5.063944 CCTCTGATCCAAAATAAGTGTCGTG 59.936 44.000 0.00 0.00 0.00 4.35
2057 3270 5.178797 CCTCTGATCCAAAATAAGTGTCGT 58.821 41.667 0.00 0.00 0.00 4.34
2058 3271 4.572389 CCCTCTGATCCAAAATAAGTGTCG 59.428 45.833 0.00 0.00 0.00 4.35
2059 3272 5.745227 TCCCTCTGATCCAAAATAAGTGTC 58.255 41.667 0.00 0.00 0.00 3.67
2060 3273 5.251700 ACTCCCTCTGATCCAAAATAAGTGT 59.748 40.000 0.00 0.00 0.00 3.55
2061 3274 5.749462 ACTCCCTCTGATCCAAAATAAGTG 58.251 41.667 0.00 0.00 0.00 3.16
2062 3275 6.443849 TGTACTCCCTCTGATCCAAAATAAGT 59.556 38.462 0.00 0.00 0.00 2.24
2063 3276 6.889198 TGTACTCCCTCTGATCCAAAATAAG 58.111 40.000 0.00 0.00 0.00 1.73
2064 3277 6.884472 TGTACTCCCTCTGATCCAAAATAA 57.116 37.500 0.00 0.00 0.00 1.40
2065 3278 6.386927 ACATGTACTCCCTCTGATCCAAAATA 59.613 38.462 0.00 0.00 0.00 1.40
2066 3279 5.192522 ACATGTACTCCCTCTGATCCAAAAT 59.807 40.000 0.00 0.00 0.00 1.82
2067 3280 4.536090 ACATGTACTCCCTCTGATCCAAAA 59.464 41.667 0.00 0.00 0.00 2.44
2068 3281 4.104086 ACATGTACTCCCTCTGATCCAAA 58.896 43.478 0.00 0.00 0.00 3.28
2069 3282 3.724478 ACATGTACTCCCTCTGATCCAA 58.276 45.455 0.00 0.00 0.00 3.53
2070 3283 3.404869 ACATGTACTCCCTCTGATCCA 57.595 47.619 0.00 0.00 0.00 3.41
2071 3284 4.762289 AAACATGTACTCCCTCTGATCC 57.238 45.455 0.00 0.00 0.00 3.36
2072 3285 7.987458 TGAAATAAACATGTACTCCCTCTGATC 59.013 37.037 0.00 0.00 0.00 2.92
2073 3286 7.861629 TGAAATAAACATGTACTCCCTCTGAT 58.138 34.615 0.00 0.00 0.00 2.90
2074 3287 7.252612 TGAAATAAACATGTACTCCCTCTGA 57.747 36.000 0.00 0.00 0.00 3.27
2075 3288 9.046296 GTATGAAATAAACATGTACTCCCTCTG 57.954 37.037 0.00 0.00 0.00 3.35
2076 3289 8.993424 AGTATGAAATAAACATGTACTCCCTCT 58.007 33.333 0.00 0.00 0.00 3.69
2077 3290 9.046296 CAGTATGAAATAAACATGTACTCCCTC 57.954 37.037 0.00 0.00 39.69 4.30
2078 3291 8.548877 ACAGTATGAAATAAACATGTACTCCCT 58.451 33.333 0.00 0.00 39.69 4.20
2079 3292 8.732746 ACAGTATGAAATAAACATGTACTCCC 57.267 34.615 0.00 0.00 39.69 4.30
2080 3293 9.601217 AGACAGTATGAAATAAACATGTACTCC 57.399 33.333 0.00 0.00 39.69 3.85
2100 3313 9.862371 CACAGTAATAAAGACATAAGAGACAGT 57.138 33.333 0.00 0.00 0.00 3.55
2112 3325 9.747293 GGAGGTATAACTCACAGTAATAAAGAC 57.253 37.037 19.35 0.00 39.27 3.01
2113 3326 9.483489 TGGAGGTATAACTCACAGTAATAAAGA 57.517 33.333 19.35 0.00 39.27 2.52
2115 3328 9.880157 GTTGGAGGTATAACTCACAGTAATAAA 57.120 33.333 19.35 0.00 39.27 1.40
2116 3329 9.038072 TGTTGGAGGTATAACTCACAGTAATAA 57.962 33.333 19.35 0.00 39.27 1.40
2117 3330 8.598202 TGTTGGAGGTATAACTCACAGTAATA 57.402 34.615 19.35 2.61 39.27 0.98
2118 3331 7.490657 TGTTGGAGGTATAACTCACAGTAAT 57.509 36.000 19.35 0.00 39.27 1.89
2119 3332 6.921486 TGTTGGAGGTATAACTCACAGTAA 57.079 37.500 19.35 3.83 39.27 2.24
2120 3333 6.921486 TTGTTGGAGGTATAACTCACAGTA 57.079 37.500 19.35 0.05 39.27 2.74
2121 3334 5.818678 TTGTTGGAGGTATAACTCACAGT 57.181 39.130 19.35 0.00 39.27 3.55
2122 3335 5.995282 TGTTTGTTGGAGGTATAACTCACAG 59.005 40.000 19.35 0.00 39.27 3.66
2123 3336 5.931294 TGTTTGTTGGAGGTATAACTCACA 58.069 37.500 19.35 12.73 39.27 3.58
2124 3337 6.870971 TTGTTTGTTGGAGGTATAACTCAC 57.129 37.500 19.35 10.30 39.27 3.51
2125 3338 7.883391 TTTTGTTTGTTGGAGGTATAACTCA 57.117 32.000 19.35 3.21 39.27 3.41
2150 3363 9.865321 CAAGATGATGTCCTTCAAATATTGTTT 57.135 29.630 0.00 0.00 0.00 2.83
2151 3364 9.246670 TCAAGATGATGTCCTTCAAATATTGTT 57.753 29.630 0.00 0.00 32.37 2.83
2152 3365 8.812513 TCAAGATGATGTCCTTCAAATATTGT 57.187 30.769 0.00 0.00 32.37 2.71
2157 3370 8.809066 TGAAATTCAAGATGATGTCCTTCAAAT 58.191 29.630 0.00 0.00 0.00 2.32
2158 3371 8.180706 TGAAATTCAAGATGATGTCCTTCAAA 57.819 30.769 0.00 0.00 0.00 2.69
2159 3372 7.764141 TGAAATTCAAGATGATGTCCTTCAA 57.236 32.000 0.00 0.00 0.00 2.69
2160 3373 7.949690 ATGAAATTCAAGATGATGTCCTTCA 57.050 32.000 0.00 0.00 0.00 3.02
2180 3393 5.416952 GGCTCAATCCTTTTCAGAGAATGAA 59.583 40.000 0.00 0.00 46.31 2.57
2181 3394 4.946157 GGCTCAATCCTTTTCAGAGAATGA 59.054 41.667 0.00 0.00 35.62 2.57
2182 3395 4.703575 TGGCTCAATCCTTTTCAGAGAATG 59.296 41.667 0.00 0.00 0.00 2.67
2183 3396 4.927049 TGGCTCAATCCTTTTCAGAGAAT 58.073 39.130 0.00 0.00 0.00 2.40
2184 3397 4.371624 TGGCTCAATCCTTTTCAGAGAA 57.628 40.909 0.00 0.00 0.00 2.87
2185 3398 4.330250 CTTGGCTCAATCCTTTTCAGAGA 58.670 43.478 0.00 0.00 0.00 3.10
2186 3399 3.442977 CCTTGGCTCAATCCTTTTCAGAG 59.557 47.826 0.00 0.00 0.00 3.35
2187 3400 3.074390 TCCTTGGCTCAATCCTTTTCAGA 59.926 43.478 0.00 0.00 0.00 3.27
2188 3401 3.424703 TCCTTGGCTCAATCCTTTTCAG 58.575 45.455 0.00 0.00 0.00 3.02
2189 3402 3.424703 CTCCTTGGCTCAATCCTTTTCA 58.575 45.455 0.00 0.00 0.00 2.69
2190 3403 2.757314 CCTCCTTGGCTCAATCCTTTTC 59.243 50.000 0.00 0.00 0.00 2.29
2191 3404 2.379907 TCCTCCTTGGCTCAATCCTTTT 59.620 45.455 0.00 0.00 35.26 2.27
2192 3405 1.995542 TCCTCCTTGGCTCAATCCTTT 59.004 47.619 0.00 0.00 35.26 3.11
2193 3406 1.673767 TCCTCCTTGGCTCAATCCTT 58.326 50.000 0.00 0.00 35.26 3.36
2194 3407 1.673767 TTCCTCCTTGGCTCAATCCT 58.326 50.000 0.00 0.00 35.26 3.24
2195 3408 2.291217 ACTTTCCTCCTTGGCTCAATCC 60.291 50.000 0.00 0.00 35.26 3.01
2196 3409 3.078891 ACTTTCCTCCTTGGCTCAATC 57.921 47.619 0.00 0.00 35.26 2.67
2197 3410 3.160269 CAACTTTCCTCCTTGGCTCAAT 58.840 45.455 0.00 0.00 35.26 2.57
2198 3411 2.586425 CAACTTTCCTCCTTGGCTCAA 58.414 47.619 0.00 0.00 35.26 3.02
2199 3412 1.819305 GCAACTTTCCTCCTTGGCTCA 60.819 52.381 0.00 0.00 35.26 4.26
2200 3413 0.884514 GCAACTTTCCTCCTTGGCTC 59.115 55.000 0.00 0.00 35.26 4.70
2201 3414 0.890996 CGCAACTTTCCTCCTTGGCT 60.891 55.000 0.00 0.00 35.26 4.75
2202 3415 0.889186 TCGCAACTTTCCTCCTTGGC 60.889 55.000 0.00 0.00 35.26 4.52
2203 3416 1.160137 CTCGCAACTTTCCTCCTTGG 58.840 55.000 0.00 0.00 37.10 3.61
2204 3417 1.801178 GTCTCGCAACTTTCCTCCTTG 59.199 52.381 0.00 0.00 0.00 3.61
2205 3418 1.694696 AGTCTCGCAACTTTCCTCCTT 59.305 47.619 0.00 0.00 0.00 3.36
2206 3419 1.343069 AGTCTCGCAACTTTCCTCCT 58.657 50.000 0.00 0.00 0.00 3.69
2207 3420 1.801178 CAAGTCTCGCAACTTTCCTCC 59.199 52.381 0.15 0.00 37.38 4.30
2208 3421 1.801178 CCAAGTCTCGCAACTTTCCTC 59.199 52.381 0.15 0.00 37.38 3.71
2209 3422 1.141053 ACCAAGTCTCGCAACTTTCCT 59.859 47.619 0.15 0.00 37.38 3.36
2210 3423 1.594331 ACCAAGTCTCGCAACTTTCC 58.406 50.000 0.15 0.00 37.38 3.13
2211 3424 3.186613 CCTTACCAAGTCTCGCAACTTTC 59.813 47.826 0.15 0.00 37.38 2.62
2212 3425 3.139077 CCTTACCAAGTCTCGCAACTTT 58.861 45.455 0.15 0.00 37.38 2.66
2213 3426 2.104281 ACCTTACCAAGTCTCGCAACTT 59.896 45.455 0.00 0.00 40.08 2.66
2214 3427 1.692519 ACCTTACCAAGTCTCGCAACT 59.307 47.619 0.00 0.00 0.00 3.16
2215 3428 2.165319 ACCTTACCAAGTCTCGCAAC 57.835 50.000 0.00 0.00 0.00 4.17
2216 3429 3.575256 TCTTACCTTACCAAGTCTCGCAA 59.425 43.478 0.00 0.00 0.00 4.85
2217 3430 3.159472 TCTTACCTTACCAAGTCTCGCA 58.841 45.455 0.00 0.00 0.00 5.10
2218 3431 3.863142 TCTTACCTTACCAAGTCTCGC 57.137 47.619 0.00 0.00 0.00 5.03
2219 3432 5.105877 TGACATCTTACCTTACCAAGTCTCG 60.106 44.000 0.00 0.00 0.00 4.04
2220 3433 6.282199 TGACATCTTACCTTACCAAGTCTC 57.718 41.667 0.00 0.00 0.00 3.36
2221 3434 6.875972 ATGACATCTTACCTTACCAAGTCT 57.124 37.500 0.00 0.00 0.00 3.24
2222 3435 7.103641 TCAATGACATCTTACCTTACCAAGTC 58.896 38.462 0.00 0.00 0.00 3.01
2223 3436 7.016153 TCAATGACATCTTACCTTACCAAGT 57.984 36.000 0.00 0.00 0.00 3.16
2224 3437 7.554118 ACATCAATGACATCTTACCTTACCAAG 59.446 37.037 0.00 0.00 0.00 3.61
2225 3438 7.402054 ACATCAATGACATCTTACCTTACCAA 58.598 34.615 0.00 0.00 0.00 3.67
2226 3439 6.957631 ACATCAATGACATCTTACCTTACCA 58.042 36.000 0.00 0.00 0.00 3.25
2227 3440 6.201044 CGACATCAATGACATCTTACCTTACC 59.799 42.308 0.00 0.00 0.00 2.85
2228 3441 6.978659 TCGACATCAATGACATCTTACCTTAC 59.021 38.462 0.00 0.00 0.00 2.34
2229 3442 7.107639 TCGACATCAATGACATCTTACCTTA 57.892 36.000 0.00 0.00 0.00 2.69
2230 3443 5.977635 TCGACATCAATGACATCTTACCTT 58.022 37.500 0.00 0.00 0.00 3.50
2231 3444 5.598416 TCGACATCAATGACATCTTACCT 57.402 39.130 0.00 0.00 0.00 3.08
2232 3445 5.812642 ACTTCGACATCAATGACATCTTACC 59.187 40.000 0.00 0.00 0.00 2.85
2233 3446 6.893958 ACTTCGACATCAATGACATCTTAC 57.106 37.500 0.00 0.00 0.00 2.34
2234 3447 6.535150 GGAACTTCGACATCAATGACATCTTA 59.465 38.462 0.00 0.00 0.00 2.10
2235 3448 5.352569 GGAACTTCGACATCAATGACATCTT 59.647 40.000 0.00 0.00 0.00 2.40
2236 3449 4.872691 GGAACTTCGACATCAATGACATCT 59.127 41.667 0.00 0.00 0.00 2.90
2237 3450 4.872691 AGGAACTTCGACATCAATGACATC 59.127 41.667 0.00 0.00 27.25 3.06
2238 3451 4.633126 CAGGAACTTCGACATCAATGACAT 59.367 41.667 0.00 0.00 34.60 3.06
2239 3452 3.996363 CAGGAACTTCGACATCAATGACA 59.004 43.478 0.00 0.00 34.60 3.58
2240 3453 3.372206 CCAGGAACTTCGACATCAATGAC 59.628 47.826 0.00 0.00 34.60 3.06
2241 3454 3.007940 ACCAGGAACTTCGACATCAATGA 59.992 43.478 0.00 0.00 34.60 2.57
2242 3455 3.338249 ACCAGGAACTTCGACATCAATG 58.662 45.455 0.00 0.00 34.60 2.82
2243 3456 3.703001 ACCAGGAACTTCGACATCAAT 57.297 42.857 0.00 0.00 34.60 2.57
2244 3457 3.576982 ACTACCAGGAACTTCGACATCAA 59.423 43.478 0.00 0.00 34.60 2.57
2245 3458 3.056821 CACTACCAGGAACTTCGACATCA 60.057 47.826 0.00 0.00 34.60 3.07
2246 3459 3.056749 ACACTACCAGGAACTTCGACATC 60.057 47.826 0.00 0.00 34.60 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.