Multiple sequence alignment - TraesCS7A01G162300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G162300 chr7A 100.000 1931 0 0 1 1931 118454165 118452235 0.000000e+00 3567.0
1 TraesCS7A01G162300 chr7A 100.000 192 0 0 2193 2384 118451973 118451782 2.910000e-94 355.0
2 TraesCS7A01G162300 chr7B 89.052 1297 83 28 113 1384 73009017 73007755 0.000000e+00 1554.0
3 TraesCS7A01G162300 chr7B 90.517 116 8 3 2202 2315 73007329 73007215 1.480000e-32 150.0
4 TraesCS7A01G162300 chr7D 88.542 480 33 11 1015 1488 113440243 113439780 1.600000e-156 562.0
5 TraesCS7A01G162300 chr4B 83.721 86 7 3 1489 1574 274043798 274043876 9.140000e-10 75.0
6 TraesCS7A01G162300 chr2B 86.885 61 8 0 1531 1591 430224573 430224633 4.250000e-08 69.4
7 TraesCS7A01G162300 chr3B 100.000 29 0 0 1567 1595 688576937 688576965 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G162300 chr7A 118451782 118454165 2383 True 1961 3567 100.0000 1 2384 2 chr7A.!!$R1 2383
1 TraesCS7A01G162300 chr7B 73007215 73009017 1802 True 852 1554 89.7845 113 2315 2 chr7B.!!$R1 2202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.105039 CCGATTCCACCCTAGCTGTC 59.895 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1444 1471 0.179009 GCCTCTGCCTCATAATGCCA 60.179 55.0 0.0 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 9.998106 TTGACTTTTTATAAGTCTTAGCTCTGT 57.002 29.630 14.61 0.00 45.13 3.41
79 80 9.998106 TGACTTTTTATAAGTCTTAGCTCTGTT 57.002 29.630 14.61 0.00 45.13 3.16
108 109 9.807921 TTTTTCCAGGAAAGTCTTAGTGATATT 57.192 29.630 14.50 0.00 32.93 1.28
109 110 9.449719 TTTTCCAGGAAAGTCTTAGTGATATTC 57.550 33.333 14.50 0.00 32.93 1.75
110 111 7.979786 TCCAGGAAAGTCTTAGTGATATTCT 57.020 36.000 0.00 0.00 0.00 2.40
111 112 9.488762 TTCCAGGAAAGTCTTAGTGATATTCTA 57.511 33.333 0.00 0.00 0.00 2.10
120 121 6.711645 GTCTTAGTGATATTCTACGAGGGAGT 59.288 42.308 0.00 0.00 0.00 3.85
123 124 6.793505 AGTGATATTCTACGAGGGAGTTTT 57.206 37.500 0.00 0.00 0.00 2.43
165 166 0.105039 CCGATTCCACCCTAGCTGTC 59.895 60.000 0.00 0.00 0.00 3.51
171 172 1.627297 CCACCCTAGCTGTCCTTCCC 61.627 65.000 0.00 0.00 0.00 3.97
175 176 0.827368 CCTAGCTGTCCTTCCCAGAC 59.173 60.000 0.00 0.00 34.72 3.51
177 178 0.413832 TAGCTGTCCTTCCCAGACCT 59.586 55.000 0.00 0.00 33.09 3.85
182 183 2.432510 CTGTCCTTCCCAGACCTACATC 59.567 54.545 0.00 0.00 33.09 3.06
187 188 4.225267 TCCTTCCCAGACCTACATCTTTTC 59.775 45.833 0.00 0.00 0.00 2.29
192 193 7.125792 TCCCAGACCTACATCTTTTCTAATC 57.874 40.000 0.00 0.00 0.00 1.75
210 211 9.912634 TTTCTAATCAATTTTGTCAACTCCATC 57.087 29.630 0.00 0.00 0.00 3.51
217 220 5.489792 TTTTGTCAACTCCATCTAGCTCT 57.510 39.130 0.00 0.00 0.00 4.09
246 249 3.272574 AGCGATCACAATGAACTCCAT 57.727 42.857 0.00 0.00 36.99 3.41
247 250 3.614092 AGCGATCACAATGAACTCCATT 58.386 40.909 0.00 0.00 45.88 3.16
248 251 4.012374 AGCGATCACAATGAACTCCATTT 58.988 39.130 0.00 0.00 42.55 2.32
249 252 5.185454 AGCGATCACAATGAACTCCATTTA 58.815 37.500 0.00 0.00 42.55 1.40
250 253 5.295292 AGCGATCACAATGAACTCCATTTAG 59.705 40.000 0.00 0.00 42.55 1.85
252 255 5.295292 CGATCACAATGAACTCCATTTAGCT 59.705 40.000 0.00 0.00 42.55 3.32
253 256 6.510799 CGATCACAATGAACTCCATTTAGCTC 60.511 42.308 0.00 0.00 42.55 4.09
255 258 6.240894 TCACAATGAACTCCATTTAGCTCTT 58.759 36.000 0.00 0.00 42.55 2.85
256 259 7.394016 TCACAATGAACTCCATTTAGCTCTTA 58.606 34.615 0.00 0.00 42.55 2.10
257 260 7.882791 TCACAATGAACTCCATTTAGCTCTTAA 59.117 33.333 0.00 0.00 42.55 1.85
263 266 5.934781 ACTCCATTTAGCTCTTAATCTGGG 58.065 41.667 0.00 0.00 30.72 4.45
268 271 5.359194 TTTAGCTCTTAATCTGGGTCTGG 57.641 43.478 0.00 0.00 0.00 3.86
277 280 0.776810 TCTGGGTCTGGGCAATTTCA 59.223 50.000 0.00 0.00 0.00 2.69
280 283 1.901159 TGGGTCTGGGCAATTTCAATG 59.099 47.619 0.00 0.00 0.00 2.82
308 313 2.679092 CTCCAGCAGCCCATGGAA 59.321 61.111 15.22 0.00 44.82 3.53
309 314 1.000521 CTCCAGCAGCCCATGGAAA 60.001 57.895 15.22 0.00 44.82 3.13
323 328 3.431207 CCATGGAAATGGGTTCAATCAGC 60.431 47.826 5.56 0.00 38.06 4.26
324 329 2.886913 TGGAAATGGGTTCAATCAGCA 58.113 42.857 0.00 0.00 38.06 4.41
327 332 1.188863 AATGGGTTCAATCAGCAGCC 58.811 50.000 0.00 0.00 0.00 4.85
329 334 0.322816 TGGGTTCAATCAGCAGCCTC 60.323 55.000 0.00 0.00 31.88 4.70
331 336 0.322816 GGTTCAATCAGCAGCCTCCA 60.323 55.000 0.00 0.00 0.00 3.86
332 337 1.684248 GGTTCAATCAGCAGCCTCCAT 60.684 52.381 0.00 0.00 0.00 3.41
339 344 2.646930 TCAGCAGCCTCCATACATTTG 58.353 47.619 0.00 0.00 0.00 2.32
341 346 2.756760 CAGCAGCCTCCATACATTTGTT 59.243 45.455 0.00 0.00 0.00 2.83
343 348 4.398988 CAGCAGCCTCCATACATTTGTTAA 59.601 41.667 0.00 0.00 0.00 2.01
344 349 4.399303 AGCAGCCTCCATACATTTGTTAAC 59.601 41.667 0.00 0.00 0.00 2.01
362 368 7.202016 TGTTAACAAATGAACAGGTCATCTC 57.798 36.000 5.64 0.00 46.80 2.75
418 426 6.650427 TGATTAAGCTAGCTCGGAATCTTA 57.350 37.500 28.91 17.58 0.00 2.10
487 495 2.860735 GACGCATTGTCGAGCTTATCTT 59.139 45.455 7.34 0.00 37.96 2.40
492 500 3.319137 TTGTCGAGCTTATCTTGCAGT 57.681 42.857 0.00 0.00 0.00 4.40
493 501 3.319137 TGTCGAGCTTATCTTGCAGTT 57.681 42.857 0.00 0.00 0.00 3.16
494 502 2.995939 TGTCGAGCTTATCTTGCAGTTG 59.004 45.455 0.00 0.00 0.00 3.16
495 503 2.002586 TCGAGCTTATCTTGCAGTTGC 58.997 47.619 0.00 0.00 42.50 4.17
505 513 2.049433 GCAGTTGCAGCAAGCCAG 60.049 61.111 8.49 0.00 44.83 4.85
506 514 2.558286 GCAGTTGCAGCAAGCCAGA 61.558 57.895 8.49 0.00 44.83 3.86
508 516 1.602888 AGTTGCAGCAAGCCAGAGG 60.603 57.895 8.49 0.00 44.83 3.69
524 539 2.076622 GAGGCGAGCTCGGAATAGCA 62.077 60.000 35.10 0.00 45.30 3.49
527 542 1.134965 GGCGAGCTCGGAATAGCATAT 60.135 52.381 35.10 0.00 45.30 1.78
530 545 3.838120 CGAGCTCGGAATAGCATATTCA 58.162 45.455 28.40 0.00 45.30 2.57
531 546 3.610242 CGAGCTCGGAATAGCATATTCAC 59.390 47.826 28.40 1.64 45.30 3.18
549 568 3.620488 TCACAAGTTCCTCAGCACTTTT 58.380 40.909 0.00 0.00 30.48 2.27
602 623 3.491619 CGTATGAGTCAGTGGCTTGCTAT 60.492 47.826 0.00 0.00 0.00 2.97
634 655 1.405105 CTGATTATGGGGGCGTTTGTG 59.595 52.381 0.00 0.00 0.00 3.33
640 661 2.791868 GGGGGCGTTTGTGCTTTGT 61.792 57.895 0.00 0.00 34.52 2.83
641 662 1.457009 GGGGGCGTTTGTGCTTTGTA 61.457 55.000 0.00 0.00 34.52 2.41
642 663 0.318360 GGGGCGTTTGTGCTTTGTAC 60.318 55.000 0.00 0.00 34.52 2.90
643 664 0.666374 GGGCGTTTGTGCTTTGTACT 59.334 50.000 0.00 0.00 34.52 2.73
672 693 4.019411 TCCTGCTCTGTTGATTATTGGTGA 60.019 41.667 0.00 0.00 0.00 4.02
673 694 4.095483 CCTGCTCTGTTGATTATTGGTGAC 59.905 45.833 0.00 0.00 0.00 3.67
674 695 4.910195 TGCTCTGTTGATTATTGGTGACT 58.090 39.130 0.00 0.00 0.00 3.41
675 696 4.696877 TGCTCTGTTGATTATTGGTGACTG 59.303 41.667 0.00 0.00 0.00 3.51
676 697 4.697352 GCTCTGTTGATTATTGGTGACTGT 59.303 41.667 0.00 0.00 0.00 3.55
677 698 5.391310 GCTCTGTTGATTATTGGTGACTGTG 60.391 44.000 0.00 0.00 0.00 3.66
678 699 5.620206 TCTGTTGATTATTGGTGACTGTGT 58.380 37.500 0.00 0.00 0.00 3.72
679 700 5.469760 TCTGTTGATTATTGGTGACTGTGTG 59.530 40.000 0.00 0.00 0.00 3.82
680 701 4.518590 TGTTGATTATTGGTGACTGTGTGG 59.481 41.667 0.00 0.00 0.00 4.17
681 702 4.365514 TGATTATTGGTGACTGTGTGGT 57.634 40.909 0.00 0.00 0.00 4.16
682 703 4.071423 TGATTATTGGTGACTGTGTGGTG 58.929 43.478 0.00 0.00 0.00 4.17
683 704 2.559698 TATTGGTGACTGTGTGGTGG 57.440 50.000 0.00 0.00 0.00 4.61
684 705 0.823356 ATTGGTGACTGTGTGGTGGC 60.823 55.000 0.00 0.00 0.00 5.01
685 706 2.594592 GGTGACTGTGTGGTGGCC 60.595 66.667 0.00 0.00 0.00 5.36
686 707 2.191908 GTGACTGTGTGGTGGCCA 59.808 61.111 0.00 0.00 0.00 5.36
687 708 1.453015 GTGACTGTGTGGTGGCCAA 60.453 57.895 7.24 0.00 34.18 4.52
688 709 1.152984 TGACTGTGTGGTGGCCAAG 60.153 57.895 7.24 1.69 34.18 3.61
729 750 1.739035 GCTCGAACGTTGATGGATGGA 60.739 52.381 5.00 0.00 0.00 3.41
759 780 3.830192 CAATGCCGGCCCTTGAGC 61.830 66.667 26.46 1.22 0.00 4.26
781 802 4.446413 CGTGGGACGCACTACCCC 62.446 72.222 19.15 0.00 45.01 4.95
784 805 3.468140 GGGACGCACTACCCCTCC 61.468 72.222 0.00 0.00 40.19 4.30
785 806 2.682494 GGACGCACTACCCCTCCA 60.682 66.667 0.00 0.00 0.00 3.86
786 807 2.577593 GACGCACTACCCCTCCAC 59.422 66.667 0.00 0.00 0.00 4.02
787 808 3.001406 ACGCACTACCCCTCCACC 61.001 66.667 0.00 0.00 0.00 4.61
794 815 2.107552 CACTACCCCTCCACCAAAAGAA 59.892 50.000 0.00 0.00 0.00 2.52
815 836 2.015736 AGACGCCATCTAAAGCTGTG 57.984 50.000 0.00 0.00 35.15 3.66
830 851 4.078639 AGCTGTGTAGGCCATAGATTTC 57.921 45.455 5.01 0.00 34.40 2.17
839 860 8.086522 GTGTAGGCCATAGATTTCGTTATCTTA 58.913 37.037 5.01 0.00 36.34 2.10
843 864 8.305317 AGGCCATAGATTTCGTTATCTTAGTAC 58.695 37.037 5.01 0.00 36.34 2.73
884 905 0.457851 AGATGACGGCAGAGCACTAC 59.542 55.000 0.00 0.00 0.00 2.73
934 955 4.503910 TCACGTAGCATAGCAAGAAACAT 58.496 39.130 0.00 0.00 0.00 2.71
937 958 4.935205 ACGTAGCATAGCAAGAAACATGAA 59.065 37.500 0.00 0.00 0.00 2.57
942 963 5.922544 AGCATAGCAAGAAACATGAACAAAC 59.077 36.000 0.00 0.00 0.00 2.93
943 964 5.164158 GCATAGCAAGAAACATGAACAAACG 60.164 40.000 0.00 0.00 0.00 3.60
945 966 4.601019 AGCAAGAAACATGAACAAACGAG 58.399 39.130 0.00 0.00 0.00 4.18
946 967 4.335315 AGCAAGAAACATGAACAAACGAGA 59.665 37.500 0.00 0.00 0.00 4.04
947 968 4.672413 GCAAGAAACATGAACAAACGAGAG 59.328 41.667 0.00 0.00 0.00 3.20
948 969 5.207768 CAAGAAACATGAACAAACGAGAGG 58.792 41.667 0.00 0.00 0.00 3.69
952 973 2.289694 ACATGAACAAACGAGAGGGAGG 60.290 50.000 0.00 0.00 0.00 4.30
968 989 1.805428 GAGGGAGCGAGCTGATCTCC 61.805 65.000 14.15 14.15 44.28 3.71
1009 1030 2.849294 TTTGATCGACATGGTGGACA 57.151 45.000 0.00 0.00 0.00 4.02
1010 1031 2.849294 TTGATCGACATGGTGGACAA 57.151 45.000 0.00 0.00 0.00 3.18
1123 1147 3.787001 GGAGGAAGAGGGTGGCGG 61.787 72.222 0.00 0.00 0.00 6.13
1188 1215 2.496817 CGGAGAAGGCTCTTCGGG 59.503 66.667 6.72 1.08 45.56 5.14
1391 1418 1.670674 CGTCGGGTTCTGAAATTCCGA 60.671 52.381 19.65 19.65 46.06 4.55
1393 1420 1.084289 CGGGTTCTGAAATTCCGACC 58.916 55.000 17.49 3.65 42.94 4.79
1394 1421 1.084289 GGGTTCTGAAATTCCGACCG 58.916 55.000 0.00 0.00 0.00 4.79
1395 1422 1.338389 GGGTTCTGAAATTCCGACCGA 60.338 52.381 0.00 0.00 0.00 4.69
1397 1424 1.730612 GTTCTGAAATTCCGACCGACC 59.269 52.381 0.00 0.00 0.00 4.79
1400 1427 0.970640 TGAAATTCCGACCGACCTGA 59.029 50.000 0.00 0.00 0.00 3.86
1401 1428 1.337447 TGAAATTCCGACCGACCTGAC 60.337 52.381 0.00 0.00 0.00 3.51
1410 1437 4.373116 CGACCTGACGGTGGGTGG 62.373 72.222 7.05 3.03 45.73 4.61
1411 1438 4.016706 GACCTGACGGTGGGTGGG 62.017 72.222 7.05 0.00 45.73 4.61
1412 1439 4.892291 ACCTGACGGTGGGTGGGT 62.892 66.667 2.16 0.00 43.51 4.51
1413 1440 4.016706 CCTGACGGTGGGTGGGTC 62.017 72.222 0.00 0.00 0.00 4.46
1414 1441 4.373116 CTGACGGTGGGTGGGTCG 62.373 72.222 0.00 0.00 33.45 4.79
1423 1450 4.629523 GGTGGGTCGGCCGTGAAA 62.630 66.667 27.15 1.49 34.97 2.69
1424 1451 3.047877 GTGGGTCGGCCGTGAAAG 61.048 66.667 27.15 0.00 34.97 2.62
1425 1452 4.323477 TGGGTCGGCCGTGAAAGG 62.323 66.667 27.15 0.00 34.97 3.11
1427 1454 4.324991 GGTCGGCCGTGAAAGGGT 62.325 66.667 27.15 0.00 45.59 4.34
1428 1455 2.281276 GTCGGCCGTGAAAGGGTT 60.281 61.111 27.15 0.00 45.59 4.11
1429 1456 1.895231 GTCGGCCGTGAAAGGGTTT 60.895 57.895 27.15 0.00 45.59 3.27
1430 1457 0.603439 GTCGGCCGTGAAAGGGTTTA 60.603 55.000 27.15 0.00 45.59 2.01
1431 1458 0.603439 TCGGCCGTGAAAGGGTTTAC 60.603 55.000 27.15 0.00 45.59 2.01
1432 1459 0.604511 CGGCCGTGAAAGGGTTTACT 60.605 55.000 19.50 0.00 45.59 2.24
1433 1460 1.612676 GGCCGTGAAAGGGTTTACTT 58.387 50.000 0.00 0.00 45.59 2.24
1434 1461 2.781923 GGCCGTGAAAGGGTTTACTTA 58.218 47.619 0.00 0.00 45.59 2.24
1435 1462 3.349927 GGCCGTGAAAGGGTTTACTTAT 58.650 45.455 0.00 0.00 45.59 1.73
1436 1463 3.760151 GGCCGTGAAAGGGTTTACTTATT 59.240 43.478 0.00 0.00 45.59 1.40
1437 1464 4.943093 GGCCGTGAAAGGGTTTACTTATTA 59.057 41.667 0.00 0.00 45.59 0.98
1438 1465 5.591472 GGCCGTGAAAGGGTTTACTTATTAT 59.409 40.000 0.00 0.00 45.59 1.28
1439 1466 6.238566 GGCCGTGAAAGGGTTTACTTATTATC 60.239 42.308 0.00 0.00 45.59 1.75
1440 1467 6.510638 GCCGTGAAAGGGTTTACTTATTATCG 60.511 42.308 0.00 0.00 45.59 2.92
1441 1468 6.536224 CCGTGAAAGGGTTTACTTATTATCGT 59.464 38.462 0.00 0.00 37.03 3.73
1442 1469 7.396419 CGTGAAAGGGTTTACTTATTATCGTG 58.604 38.462 0.00 0.00 0.00 4.35
1443 1470 7.063780 CGTGAAAGGGTTTACTTATTATCGTGT 59.936 37.037 0.00 0.00 0.00 4.49
1444 1471 8.724229 GTGAAAGGGTTTACTTATTATCGTGTT 58.276 33.333 0.00 0.00 0.00 3.32
1445 1472 8.723311 TGAAAGGGTTTACTTATTATCGTGTTG 58.277 33.333 0.00 0.00 0.00 3.33
1446 1473 7.619964 AAGGGTTTACTTATTATCGTGTTGG 57.380 36.000 0.00 0.00 0.00 3.77
1447 1474 5.587443 AGGGTTTACTTATTATCGTGTTGGC 59.413 40.000 0.00 0.00 0.00 4.52
1448 1475 5.354792 GGGTTTACTTATTATCGTGTTGGCA 59.645 40.000 0.00 0.00 0.00 4.92
1449 1476 6.038936 GGGTTTACTTATTATCGTGTTGGCAT 59.961 38.462 0.00 0.00 0.00 4.40
1450 1477 7.415877 GGGTTTACTTATTATCGTGTTGGCATT 60.416 37.037 0.00 0.00 0.00 3.56
1451 1478 8.614346 GGTTTACTTATTATCGTGTTGGCATTA 58.386 33.333 0.00 0.00 0.00 1.90
1454 1481 9.549078 TTACTTATTATCGTGTTGGCATTATGA 57.451 29.630 0.00 0.00 0.00 2.15
1455 1482 8.087982 ACTTATTATCGTGTTGGCATTATGAG 57.912 34.615 0.00 0.00 0.00 2.90
1456 1483 5.947228 ATTATCGTGTTGGCATTATGAGG 57.053 39.130 0.00 0.00 0.00 3.86
1457 1484 1.378531 TCGTGTTGGCATTATGAGGC 58.621 50.000 0.00 0.00 0.00 4.70
1458 1485 1.093972 CGTGTTGGCATTATGAGGCA 58.906 50.000 0.00 0.00 40.01 4.75
1459 1486 1.064505 CGTGTTGGCATTATGAGGCAG 59.935 52.381 0.00 0.00 42.75 4.85
1460 1487 2.368439 GTGTTGGCATTATGAGGCAGA 58.632 47.619 0.00 0.00 42.75 4.26
1488 1515 4.322499 CCACCTTCGGTCTTTGTACATACT 60.322 45.833 0.00 0.00 31.02 2.12
1489 1516 5.105635 CCACCTTCGGTCTTTGTACATACTA 60.106 44.000 0.00 0.00 31.02 1.82
1490 1517 5.803967 CACCTTCGGTCTTTGTACATACTAC 59.196 44.000 0.00 0.00 31.02 2.73
1491 1518 5.713861 ACCTTCGGTCTTTGTACATACTACT 59.286 40.000 0.00 0.00 0.00 2.57
1492 1519 6.210185 ACCTTCGGTCTTTGTACATACTACTT 59.790 38.462 0.00 0.00 0.00 2.24
1493 1520 6.750963 CCTTCGGTCTTTGTACATACTACTTC 59.249 42.308 0.00 0.00 0.00 3.01
1494 1521 6.199937 TCGGTCTTTGTACATACTACTTCC 57.800 41.667 0.00 0.00 0.00 3.46
1495 1522 5.948162 TCGGTCTTTGTACATACTACTTCCT 59.052 40.000 0.00 0.00 0.00 3.36
1496 1523 6.435277 TCGGTCTTTGTACATACTACTTCCTT 59.565 38.462 0.00 0.00 0.00 3.36
1497 1524 6.750963 CGGTCTTTGTACATACTACTTCCTTC 59.249 42.308 0.00 0.00 0.00 3.46
1498 1525 6.750963 GGTCTTTGTACATACTACTTCCTTCG 59.249 42.308 0.00 0.00 0.00 3.79
1499 1526 7.311408 GTCTTTGTACATACTACTTCCTTCGT 58.689 38.462 0.00 0.00 0.00 3.85
1500 1527 7.484324 GTCTTTGTACATACTACTTCCTTCGTC 59.516 40.741 0.00 0.00 0.00 4.20
1501 1528 5.824904 TGTACATACTACTTCCTTCGTCC 57.175 43.478 0.00 0.00 0.00 4.79
1502 1529 4.641989 TGTACATACTACTTCCTTCGTCCC 59.358 45.833 0.00 0.00 0.00 4.46
1503 1530 3.705051 ACATACTACTTCCTTCGTCCCA 58.295 45.455 0.00 0.00 0.00 4.37
1504 1531 4.091549 ACATACTACTTCCTTCGTCCCAA 58.908 43.478 0.00 0.00 0.00 4.12
1505 1532 4.529377 ACATACTACTTCCTTCGTCCCAAA 59.471 41.667 0.00 0.00 0.00 3.28
1506 1533 5.012354 ACATACTACTTCCTTCGTCCCAAAA 59.988 40.000 0.00 0.00 0.00 2.44
1507 1534 4.635699 ACTACTTCCTTCGTCCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
1508 1535 5.750352 ACTACTTCCTTCGTCCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
1509 1536 6.117975 ACTACTTCCTTCGTCCCAAAATAA 57.882 37.500 0.00 0.00 0.00 1.40
1510 1537 6.171213 ACTACTTCCTTCGTCCCAAAATAAG 58.829 40.000 0.00 0.00 0.00 1.73
1511 1538 3.756963 ACTTCCTTCGTCCCAAAATAAGC 59.243 43.478 0.00 0.00 0.00 3.09
1512 1539 2.352388 TCCTTCGTCCCAAAATAAGCG 58.648 47.619 0.00 0.00 0.00 4.68
1513 1540 2.081462 CCTTCGTCCCAAAATAAGCGT 58.919 47.619 0.00 0.00 0.00 5.07
1514 1541 2.095372 CCTTCGTCCCAAAATAAGCGTC 59.905 50.000 0.00 0.00 0.00 5.19
1515 1542 2.754946 TCGTCCCAAAATAAGCGTCT 57.245 45.000 0.00 0.00 0.00 4.18
1516 1543 3.048337 TCGTCCCAAAATAAGCGTCTT 57.952 42.857 0.00 0.00 0.00 3.01
1517 1544 4.191033 TCGTCCCAAAATAAGCGTCTTA 57.809 40.909 2.53 2.53 0.00 2.10
1518 1545 4.567971 TCGTCCCAAAATAAGCGTCTTAA 58.432 39.130 3.93 0.00 0.00 1.85
1519 1546 4.389687 TCGTCCCAAAATAAGCGTCTTAAC 59.610 41.667 3.93 0.00 0.00 2.01
1520 1547 4.390909 CGTCCCAAAATAAGCGTCTTAACT 59.609 41.667 3.93 0.00 0.00 2.24
1521 1548 5.106830 CGTCCCAAAATAAGCGTCTTAACTT 60.107 40.000 3.93 0.00 0.00 2.66
1522 1549 6.567132 CGTCCCAAAATAAGCGTCTTAACTTT 60.567 38.462 3.93 4.69 0.00 2.66
1523 1550 7.360269 CGTCCCAAAATAAGCGTCTTAACTTTA 60.360 37.037 3.93 0.00 0.00 1.85
1524 1551 8.456471 GTCCCAAAATAAGCGTCTTAACTTTAT 58.544 33.333 3.93 0.00 0.00 1.40
1525 1552 9.669887 TCCCAAAATAAGCGTCTTAACTTTATA 57.330 29.630 3.93 0.00 0.00 0.98
1586 1613 2.936202 CACTTATTGTGGGATGGAGGG 58.064 52.381 0.00 0.00 42.68 4.30
1587 1614 2.509548 CACTTATTGTGGGATGGAGGGA 59.490 50.000 0.00 0.00 42.68 4.20
1588 1615 2.780010 ACTTATTGTGGGATGGAGGGAG 59.220 50.000 0.00 0.00 0.00 4.30
1589 1616 2.587060 TATTGTGGGATGGAGGGAGT 57.413 50.000 0.00 0.00 0.00 3.85
1590 1617 2.587060 ATTGTGGGATGGAGGGAGTA 57.413 50.000 0.00 0.00 0.00 2.59
1591 1618 1.580059 TTGTGGGATGGAGGGAGTAC 58.420 55.000 0.00 0.00 0.00 2.73
1592 1619 0.716591 TGTGGGATGGAGGGAGTACT 59.283 55.000 0.00 0.00 0.00 2.73
1593 1620 1.934480 TGTGGGATGGAGGGAGTACTA 59.066 52.381 0.00 0.00 0.00 1.82
1594 1621 2.317973 GTGGGATGGAGGGAGTACTAC 58.682 57.143 0.00 0.00 0.00 2.73
1614 1641 3.851845 AAGGTGTGCTTCGCGCGTA 62.852 57.895 30.98 20.48 42.51 4.42
1615 1642 3.408020 GGTGTGCTTCGCGCGTAA 61.408 61.111 30.98 20.44 42.51 3.18
1616 1643 2.202008 GTGTGCTTCGCGCGTAAC 60.202 61.111 30.98 21.96 42.51 2.50
1620 1647 2.095843 GCTTCGCGCGTAACAAGG 59.904 61.111 30.98 11.66 0.00 3.61
1622 1649 3.362851 CTTCGCGCGTAACAAGGCC 62.363 63.158 30.98 0.00 0.00 5.19
1631 1658 1.335506 CGTAACAAGGCCGCAAACATT 60.336 47.619 0.00 0.00 0.00 2.71
1635 1662 1.939255 ACAAGGCCGCAAACATTTTTG 59.061 42.857 0.00 0.00 44.42 2.44
1651 1678 9.816354 AAACATTTTTGCTCTTTTATAGTGTGT 57.184 25.926 0.00 0.00 0.00 3.72
1652 1679 8.801715 ACATTTTTGCTCTTTTATAGTGTGTG 57.198 30.769 0.00 0.00 0.00 3.82
1663 1690 8.349245 TCTTTTATAGTGTGTGTTGGTGATTTG 58.651 33.333 0.00 0.00 0.00 2.32
1672 1699 4.036262 TGTGTTGGTGATTTGTAGTTCTGC 59.964 41.667 0.00 0.00 0.00 4.26
1673 1700 3.568007 TGTTGGTGATTTGTAGTTCTGCC 59.432 43.478 0.00 0.00 0.00 4.85
1691 1718 1.680207 GCCTTTGCTTGGATCTCCATC 59.320 52.381 0.00 0.00 46.97 3.51
1710 1737 6.596621 TCCATCCATGTATGTAAAAATCCGA 58.403 36.000 0.00 0.00 0.00 4.55
1731 1758 8.749026 TCCGACTCTACTCAATAAATTCTAGT 57.251 34.615 0.00 0.00 0.00 2.57
1732 1759 8.622157 TCCGACTCTACTCAATAAATTCTAGTG 58.378 37.037 0.00 0.00 0.00 2.74
1768 1795 4.926860 TGCGACACAACTATTCTCATTG 57.073 40.909 0.00 0.00 0.00 2.82
1776 1804 5.865013 CACAACTATTCTCATTGCATGCAAA 59.135 36.000 34.84 19.80 39.55 3.68
1780 1808 6.694447 ACTATTCTCATTGCATGCAAACTTT 58.306 32.000 34.84 17.44 39.55 2.66
1807 1836 4.632688 CCGTAACAATATCAGGGAACGTTT 59.367 41.667 0.46 0.00 0.00 3.60
1809 1838 4.434713 AACAATATCAGGGAACGTTTGC 57.565 40.909 0.46 0.00 0.00 3.68
1828 1857 0.247460 CTGCGAGTGAGATCCCAACA 59.753 55.000 0.00 0.00 0.00 3.33
1844 1873 2.840102 CAAACGCCCCAACCCCAA 60.840 61.111 0.00 0.00 0.00 4.12
1852 1881 1.536174 CCCAACCCCAAAGCCACAT 60.536 57.895 0.00 0.00 0.00 3.21
1859 1888 0.831288 CCCAAAGCCACATGGTCCAA 60.831 55.000 0.00 0.00 37.57 3.53
1890 1919 7.909485 AGGATGGCTCTTATTGATGAAAATT 57.091 32.000 0.00 0.00 0.00 1.82
1894 1923 6.101332 TGGCTCTTATTGATGAAAATTGCAC 58.899 36.000 0.00 0.00 0.00 4.57
1930 1961 8.510243 AAAATTCATGCTTTTTCCTGAAAACT 57.490 26.923 4.61 0.00 39.70 2.66
2234 2265 2.965462 CGTTCGCCGGGGATTAGC 60.965 66.667 23.22 11.69 0.00 3.09
2315 2348 7.269937 CACGAGTAATGCAAAATTCTCTTTCAG 59.730 37.037 0.00 0.00 0.00 3.02
2316 2349 6.250104 CGAGTAATGCAAAATTCTCTTTCAGC 59.750 38.462 0.00 0.00 0.00 4.26
2317 2350 6.985117 AGTAATGCAAAATTCTCTTTCAGCA 58.015 32.000 0.00 0.00 35.03 4.41
2318 2351 7.609056 AGTAATGCAAAATTCTCTTTCAGCAT 58.391 30.769 0.00 0.00 42.62 3.79
2320 2353 6.721571 ATGCAAAATTCTCTTTCAGCATTG 57.278 33.333 0.00 0.00 38.18 2.82
2321 2354 5.845103 TGCAAAATTCTCTTTCAGCATTGA 58.155 33.333 0.00 0.00 0.00 2.57
2322 2355 5.924254 TGCAAAATTCTCTTTCAGCATTGAG 59.076 36.000 0.00 0.00 34.15 3.02
2323 2356 6.154445 GCAAAATTCTCTTTCAGCATTGAGA 58.846 36.000 0.00 0.00 34.15 3.27
2324 2357 6.812160 GCAAAATTCTCTTTCAGCATTGAGAT 59.188 34.615 0.00 0.00 35.78 2.75
2325 2358 7.201444 GCAAAATTCTCTTTCAGCATTGAGATG 60.201 37.037 0.00 0.00 35.78 2.90
2340 2373 7.092137 CATTGAGATGCAAAATCTTACTCCA 57.908 36.000 0.00 0.00 40.48 3.86
2341 2374 7.713750 CATTGAGATGCAAAATCTTACTCCAT 58.286 34.615 0.00 0.00 40.48 3.41
2342 2375 7.707624 TTGAGATGCAAAATCTTACTCCATT 57.292 32.000 0.00 0.00 32.46 3.16
2343 2376 7.707624 TGAGATGCAAAATCTTACTCCATTT 57.292 32.000 0.00 0.00 0.00 2.32
2344 2377 8.125978 TGAGATGCAAAATCTTACTCCATTTT 57.874 30.769 0.00 0.00 33.37 1.82
2345 2378 8.587608 TGAGATGCAAAATCTTACTCCATTTTT 58.412 29.630 0.00 0.00 31.22 1.94
2346 2379 8.767478 AGATGCAAAATCTTACTCCATTTTTG 57.233 30.769 0.00 0.00 39.23 2.44
2347 2380 8.370182 AGATGCAAAATCTTACTCCATTTTTGT 58.630 29.630 0.00 0.00 38.74 2.83
2348 2381 8.907222 ATGCAAAATCTTACTCCATTTTTGTT 57.093 26.923 0.00 0.00 38.74 2.83
2349 2382 8.140677 TGCAAAATCTTACTCCATTTTTGTTG 57.859 30.769 7.88 0.00 38.74 3.33
2350 2383 7.071414 GCAAAATCTTACTCCATTTTTGTTGC 58.929 34.615 7.88 0.00 38.74 4.17
2351 2384 7.575365 CAAAATCTTACTCCATTTTTGTTGCC 58.425 34.615 0.00 0.00 34.29 4.52
2352 2385 6.670695 AATCTTACTCCATTTTTGTTGCCT 57.329 33.333 0.00 0.00 0.00 4.75
2353 2386 7.775053 AATCTTACTCCATTTTTGTTGCCTA 57.225 32.000 0.00 0.00 0.00 3.93
2354 2387 7.961326 ATCTTACTCCATTTTTGTTGCCTAT 57.039 32.000 0.00 0.00 0.00 2.57
2355 2388 7.391148 TCTTACTCCATTTTTGTTGCCTATC 57.609 36.000 0.00 0.00 0.00 2.08
2356 2389 6.945435 TCTTACTCCATTTTTGTTGCCTATCA 59.055 34.615 0.00 0.00 0.00 2.15
2357 2390 7.615365 TCTTACTCCATTTTTGTTGCCTATCAT 59.385 33.333 0.00 0.00 0.00 2.45
2358 2391 6.212888 ACTCCATTTTTGTTGCCTATCATC 57.787 37.500 0.00 0.00 0.00 2.92
2359 2392 5.954150 ACTCCATTTTTGTTGCCTATCATCT 59.046 36.000 0.00 0.00 0.00 2.90
2360 2393 6.438425 ACTCCATTTTTGTTGCCTATCATCTT 59.562 34.615 0.00 0.00 0.00 2.40
2361 2394 7.038799 ACTCCATTTTTGTTGCCTATCATCTTT 60.039 33.333 0.00 0.00 0.00 2.52
2362 2395 8.359875 TCCATTTTTGTTGCCTATCATCTTTA 57.640 30.769 0.00 0.00 0.00 1.85
2363 2396 8.250332 TCCATTTTTGTTGCCTATCATCTTTAC 58.750 33.333 0.00 0.00 0.00 2.01
2364 2397 7.492344 CCATTTTTGTTGCCTATCATCTTTACC 59.508 37.037 0.00 0.00 0.00 2.85
2365 2398 7.531857 TTTTTGTTGCCTATCATCTTTACCA 57.468 32.000 0.00 0.00 0.00 3.25
2366 2399 7.531857 TTTTGTTGCCTATCATCTTTACCAA 57.468 32.000 0.00 0.00 0.00 3.67
2367 2400 7.716799 TTTGTTGCCTATCATCTTTACCAAT 57.283 32.000 0.00 0.00 0.00 3.16
2368 2401 8.815565 TTTGTTGCCTATCATCTTTACCAATA 57.184 30.769 0.00 0.00 0.00 1.90
2369 2402 7.801716 TGTTGCCTATCATCTTTACCAATAC 57.198 36.000 0.00 0.00 0.00 1.89
2370 2403 7.342581 TGTTGCCTATCATCTTTACCAATACA 58.657 34.615 0.00 0.00 0.00 2.29
2371 2404 7.831690 TGTTGCCTATCATCTTTACCAATACAA 59.168 33.333 0.00 0.00 0.00 2.41
2372 2405 8.345565 GTTGCCTATCATCTTTACCAATACAAG 58.654 37.037 0.00 0.00 0.00 3.16
2373 2406 6.998074 TGCCTATCATCTTTACCAATACAAGG 59.002 38.462 0.00 0.00 0.00 3.61
2374 2407 6.072452 GCCTATCATCTTTACCAATACAAGGC 60.072 42.308 0.00 0.00 36.79 4.35
2375 2408 6.998074 CCTATCATCTTTACCAATACAAGGCA 59.002 38.462 0.00 0.00 0.00 4.75
2376 2409 7.502226 CCTATCATCTTTACCAATACAAGGCAA 59.498 37.037 0.00 0.00 0.00 4.52
2377 2410 7.902920 ATCATCTTTACCAATACAAGGCAAT 57.097 32.000 0.00 0.00 0.00 3.56
2378 2411 7.333528 TCATCTTTACCAATACAAGGCAATC 57.666 36.000 0.00 0.00 0.00 2.67
2379 2412 7.118723 TCATCTTTACCAATACAAGGCAATCT 58.881 34.615 0.00 0.00 0.00 2.40
2380 2413 6.757897 TCTTTACCAATACAAGGCAATCTG 57.242 37.500 0.00 0.00 0.00 2.90
2381 2414 6.480763 TCTTTACCAATACAAGGCAATCTGA 58.519 36.000 0.00 0.00 0.00 3.27
2382 2415 7.118723 TCTTTACCAATACAAGGCAATCTGAT 58.881 34.615 0.00 0.00 0.00 2.90
2383 2416 7.615365 TCTTTACCAATACAAGGCAATCTGATT 59.385 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.998106 ACAGAGCTAAGACTTATAAAAAGTCAA 57.002 29.630 17.49 6.70 46.78 3.18
53 54 9.998106 AACAGAGCTAAGACTTATAAAAAGTCA 57.002 29.630 17.49 0.53 46.78 3.41
82 83 9.807921 AATATCACTAAGACTTTCCTGGAAAAA 57.192 29.630 21.39 2.05 30.84 1.94
83 84 9.449719 GAATATCACTAAGACTTTCCTGGAAAA 57.550 33.333 21.39 6.80 30.84 2.29
84 85 8.826765 AGAATATCACTAAGACTTTCCTGGAAA 58.173 33.333 20.06 20.06 0.00 3.13
85 86 8.380742 AGAATATCACTAAGACTTTCCTGGAA 57.619 34.615 4.68 4.68 0.00 3.53
86 87 7.979786 AGAATATCACTAAGACTTTCCTGGA 57.020 36.000 0.00 0.00 0.00 3.86
87 88 7.863375 CGTAGAATATCACTAAGACTTTCCTGG 59.137 40.741 0.00 0.00 0.00 4.45
88 89 8.622157 TCGTAGAATATCACTAAGACTTTCCTG 58.378 37.037 0.00 0.00 0.00 3.86
89 90 8.749026 TCGTAGAATATCACTAAGACTTTCCT 57.251 34.615 0.00 0.00 0.00 3.36
90 91 8.077386 CCTCGTAGAATATCACTAAGACTTTCC 58.923 40.741 0.00 0.00 34.09 3.13
91 92 8.077386 CCCTCGTAGAATATCACTAAGACTTTC 58.923 40.741 0.00 0.00 34.09 2.62
92 93 7.778853 TCCCTCGTAGAATATCACTAAGACTTT 59.221 37.037 0.00 0.00 34.09 2.66
93 94 7.288560 TCCCTCGTAGAATATCACTAAGACTT 58.711 38.462 0.00 0.00 34.09 3.01
94 95 6.839454 TCCCTCGTAGAATATCACTAAGACT 58.161 40.000 0.00 0.00 34.09 3.24
95 96 6.711645 ACTCCCTCGTAGAATATCACTAAGAC 59.288 42.308 0.00 0.00 34.09 3.01
96 97 6.839454 ACTCCCTCGTAGAATATCACTAAGA 58.161 40.000 0.00 0.00 34.09 2.10
97 98 7.513371 AACTCCCTCGTAGAATATCACTAAG 57.487 40.000 0.00 0.00 34.09 2.18
98 99 7.893124 AAACTCCCTCGTAGAATATCACTAA 57.107 36.000 0.00 0.00 34.09 2.24
99 100 7.893124 AAAACTCCCTCGTAGAATATCACTA 57.107 36.000 0.00 0.00 34.09 2.74
100 101 6.793505 AAAACTCCCTCGTAGAATATCACT 57.206 37.500 0.00 0.00 34.09 3.41
101 102 7.222999 CAGAAAAACTCCCTCGTAGAATATCAC 59.777 40.741 0.00 0.00 34.09 3.06
102 103 7.265673 CAGAAAAACTCCCTCGTAGAATATCA 58.734 38.462 0.00 0.00 34.09 2.15
103 104 6.201234 GCAGAAAAACTCCCTCGTAGAATATC 59.799 42.308 0.00 0.00 34.09 1.63
104 105 6.049790 GCAGAAAAACTCCCTCGTAGAATAT 58.950 40.000 0.00 0.00 34.09 1.28
105 106 5.187186 AGCAGAAAAACTCCCTCGTAGAATA 59.813 40.000 0.00 0.00 34.09 1.75
106 107 4.020128 AGCAGAAAAACTCCCTCGTAGAAT 60.020 41.667 0.00 0.00 34.09 2.40
107 108 3.323979 AGCAGAAAAACTCCCTCGTAGAA 59.676 43.478 0.00 0.00 34.09 2.10
108 109 2.897969 AGCAGAAAAACTCCCTCGTAGA 59.102 45.455 0.00 0.00 0.00 2.59
109 110 3.320673 AGCAGAAAAACTCCCTCGTAG 57.679 47.619 0.00 0.00 0.00 3.51
110 111 3.368116 GCTAGCAGAAAAACTCCCTCGTA 60.368 47.826 10.63 0.00 0.00 3.43
111 112 2.613223 GCTAGCAGAAAAACTCCCTCGT 60.613 50.000 10.63 0.00 0.00 4.18
165 166 4.226168 AGAAAAGATGTAGGTCTGGGAAGG 59.774 45.833 0.00 0.00 0.00 3.46
182 183 9.748708 TGGAGTTGACAAAATTGATTAGAAAAG 57.251 29.630 0.00 0.00 0.00 2.27
192 193 6.373774 AGAGCTAGATGGAGTTGACAAAATTG 59.626 38.462 0.00 0.00 0.00 2.32
202 203 7.281999 GCTTCAAATTAAGAGCTAGATGGAGTT 59.718 37.037 0.00 0.00 0.00 3.01
210 211 6.256539 TGTGATCGCTTCAAATTAAGAGCTAG 59.743 38.462 7.94 0.00 35.70 3.42
213 216 5.221891 TGTGATCGCTTCAAATTAAGAGC 57.778 39.130 7.94 0.00 35.70 4.09
217 220 7.592938 AGTTCATTGTGATCGCTTCAAATTAA 58.407 30.769 7.94 0.00 35.70 1.40
246 249 4.164221 CCCAGACCCAGATTAAGAGCTAAA 59.836 45.833 0.00 0.00 0.00 1.85
247 250 3.711704 CCCAGACCCAGATTAAGAGCTAA 59.288 47.826 0.00 0.00 0.00 3.09
248 251 3.309296 CCCAGACCCAGATTAAGAGCTA 58.691 50.000 0.00 0.00 0.00 3.32
249 252 2.122768 CCCAGACCCAGATTAAGAGCT 58.877 52.381 0.00 0.00 0.00 4.09
250 253 1.475930 GCCCAGACCCAGATTAAGAGC 60.476 57.143 0.00 0.00 0.00 4.09
252 255 1.965414 TGCCCAGACCCAGATTAAGA 58.035 50.000 0.00 0.00 0.00 2.10
253 256 2.806945 TTGCCCAGACCCAGATTAAG 57.193 50.000 0.00 0.00 0.00 1.85
255 258 3.011144 TGAAATTGCCCAGACCCAGATTA 59.989 43.478 0.00 0.00 0.00 1.75
256 259 2.225343 TGAAATTGCCCAGACCCAGATT 60.225 45.455 0.00 0.00 0.00 2.40
257 260 1.358787 TGAAATTGCCCAGACCCAGAT 59.641 47.619 0.00 0.00 0.00 2.90
263 266 1.551883 AGCCATTGAAATTGCCCAGAC 59.448 47.619 0.00 0.00 0.00 3.51
268 271 1.202114 TGTCGAGCCATTGAAATTGCC 59.798 47.619 0.00 0.00 0.00 4.52
277 280 2.249413 CTGGAGCCTGTCGAGCCATT 62.249 60.000 0.00 0.00 0.00 3.16
308 313 1.188863 GGCTGCTGATTGAACCCATT 58.811 50.000 0.00 0.00 0.00 3.16
309 314 0.333993 AGGCTGCTGATTGAACCCAT 59.666 50.000 0.00 0.00 0.00 4.00
314 319 2.239402 TGTATGGAGGCTGCTGATTGAA 59.761 45.455 7.74 0.00 0.00 2.69
323 328 5.895636 TGTTAACAAATGTATGGAGGCTG 57.104 39.130 5.64 0.00 0.00 4.85
324 329 6.909550 TTTGTTAACAAATGTATGGAGGCT 57.090 33.333 26.05 0.00 40.55 4.58
339 344 6.073222 ACGAGATGACCTGTTCATTTGTTAAC 60.073 38.462 0.00 0.00 45.67 2.01
341 346 5.547465 ACGAGATGACCTGTTCATTTGTTA 58.453 37.500 0.00 0.00 45.67 2.41
343 348 3.997021 GACGAGATGACCTGTTCATTTGT 59.003 43.478 0.00 0.00 45.67 2.83
344 349 3.996363 TGACGAGATGACCTGTTCATTTG 59.004 43.478 0.00 0.00 45.67 2.32
378 384 4.778143 ATGGGCGGGCGAACTGAC 62.778 66.667 0.00 0.00 0.00 3.51
432 440 2.488937 TCTTGGTTATGTACGAGCGACA 59.511 45.455 0.00 0.00 0.00 4.35
437 445 8.173130 GGTAAACAAATCTTGGTTATGTACGAG 58.827 37.037 0.56 0.00 43.97 4.18
492 500 2.987547 GCCTCTGGCTTGCTGCAA 60.988 61.111 15.16 15.16 46.69 4.08
502 510 1.456196 TATTCCGAGCTCGCCTCTGG 61.456 60.000 30.49 15.61 38.49 3.86
503 511 0.039617 CTATTCCGAGCTCGCCTCTG 60.040 60.000 30.49 16.36 38.49 3.35
504 512 1.801309 GCTATTCCGAGCTCGCCTCT 61.801 60.000 30.49 15.90 39.50 3.69
505 513 1.372375 GCTATTCCGAGCTCGCCTC 60.372 63.158 30.49 11.31 39.50 4.70
506 514 1.467678 ATGCTATTCCGAGCTCGCCT 61.468 55.000 30.49 17.99 43.27 5.52
508 516 2.285827 ATATGCTATTCCGAGCTCGC 57.714 50.000 30.49 15.89 43.27 5.03
509 517 3.610242 GTGAATATGCTATTCCGAGCTCG 59.390 47.826 29.06 29.06 43.27 5.03
510 518 4.560128 TGTGAATATGCTATTCCGAGCTC 58.440 43.478 2.73 2.73 43.27 4.09
511 519 4.607293 TGTGAATATGCTATTCCGAGCT 57.393 40.909 11.15 0.00 43.27 4.09
512 520 4.752101 ACTTGTGAATATGCTATTCCGAGC 59.248 41.667 11.15 0.00 43.16 5.03
513 521 6.073548 GGAACTTGTGAATATGCTATTCCGAG 60.074 42.308 11.15 12.26 0.00 4.63
524 539 5.171339 AGTGCTGAGGAACTTGTGAATAT 57.829 39.130 0.00 0.00 41.55 1.28
527 542 3.281727 AAGTGCTGAGGAACTTGTGAA 57.718 42.857 0.00 0.00 39.69 3.18
530 545 3.356290 ACAAAAGTGCTGAGGAACTTGT 58.644 40.909 0.00 0.00 40.25 3.16
531 546 3.629398 AGACAAAAGTGCTGAGGAACTTG 59.371 43.478 0.00 0.00 40.25 3.16
549 568 1.616374 TGTTCATGGTACTGCGAGACA 59.384 47.619 0.00 0.00 0.00 3.41
602 623 3.346315 CCATAATCAGGATGCGCCAATA 58.654 45.455 4.18 0.00 40.02 1.90
672 693 2.195683 CCTTGGCCACCACACAGT 59.804 61.111 3.88 0.00 30.78 3.55
673 694 3.297620 GCCTTGGCCACCACACAG 61.298 66.667 3.88 0.00 30.78 3.66
674 695 4.912395 GGCCTTGGCCACCACACA 62.912 66.667 24.50 0.00 30.78 3.72
675 696 4.912395 TGGCCTTGGCCACCACAC 62.912 66.667 27.73 2.19 34.56 3.82
676 697 4.149019 TTGGCCTTGGCCACCACA 62.149 61.111 30.76 15.19 39.87 4.17
677 698 3.615709 GTTGGCCTTGGCCACCAC 61.616 66.667 30.76 23.15 39.87 4.16
678 699 3.831637 AGTTGGCCTTGGCCACCA 61.832 61.111 30.76 16.30 39.87 4.17
679 700 3.305516 CAGTTGGCCTTGGCCACC 61.306 66.667 30.76 24.74 39.87 4.61
680 701 2.203480 TCAGTTGGCCTTGGCCAC 60.203 61.111 30.76 23.79 39.87 5.01
681 702 1.422977 TAGTCAGTTGGCCTTGGCCA 61.423 55.000 27.73 27.73 38.19 5.36
682 703 0.251165 TTAGTCAGTTGGCCTTGGCC 60.251 55.000 22.91 22.91 0.00 5.36
683 704 1.269723 GTTTAGTCAGTTGGCCTTGGC 59.730 52.381 3.32 2.49 0.00 4.52
684 705 1.886542 GGTTTAGTCAGTTGGCCTTGG 59.113 52.381 3.32 0.00 0.00 3.61
685 706 2.293399 GTGGTTTAGTCAGTTGGCCTTG 59.707 50.000 3.32 0.00 0.00 3.61
686 707 2.583143 GTGGTTTAGTCAGTTGGCCTT 58.417 47.619 3.32 0.00 0.00 4.35
687 708 1.202891 GGTGGTTTAGTCAGTTGGCCT 60.203 52.381 3.32 0.00 0.00 5.19
688 709 1.202891 AGGTGGTTTAGTCAGTTGGCC 60.203 52.381 0.00 0.00 0.00 5.36
729 750 2.317609 GCATTGACCGCTGTGACGT 61.318 57.895 0.00 0.00 0.00 4.34
781 802 2.287608 GGCGTCTTTTCTTTTGGTGGAG 60.288 50.000 0.00 0.00 0.00 3.86
784 805 2.861462 TGGCGTCTTTTCTTTTGGTG 57.139 45.000 0.00 0.00 0.00 4.17
785 806 3.222603 AGATGGCGTCTTTTCTTTTGGT 58.777 40.909 2.64 0.00 31.47 3.67
786 807 3.923017 AGATGGCGTCTTTTCTTTTGG 57.077 42.857 2.64 0.00 31.47 3.28
787 808 5.343325 GCTTTAGATGGCGTCTTTTCTTTTG 59.657 40.000 15.53 0.00 38.42 2.44
794 815 2.744202 CACAGCTTTAGATGGCGTCTTT 59.256 45.455 15.53 0.00 38.42 2.52
815 836 8.305317 ACTAAGATAACGAAATCTATGGCCTAC 58.695 37.037 3.32 0.00 35.10 3.18
839 860 3.067461 TGCGGCAGTTGAATTTTTGTACT 59.933 39.130 0.00 0.00 0.00 2.73
843 864 1.189884 CGTGCGGCAGTTGAATTTTTG 59.810 47.619 1.18 0.00 0.00 2.44
934 955 0.685097 CCCTCCCTCTCGTTTGTTCA 59.315 55.000 0.00 0.00 0.00 3.18
937 958 1.545706 GCTCCCTCCCTCTCGTTTGT 61.546 60.000 0.00 0.00 0.00 2.83
942 963 2.904866 CTCGCTCCCTCCCTCTCG 60.905 72.222 0.00 0.00 0.00 4.04
943 964 3.223589 GCTCGCTCCCTCCCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
945 966 3.535962 CAGCTCGCTCCCTCCCTC 61.536 72.222 0.00 0.00 0.00 4.30
946 967 3.387609 ATCAGCTCGCTCCCTCCCT 62.388 63.158 0.00 0.00 0.00 4.20
947 968 2.841988 ATCAGCTCGCTCCCTCCC 60.842 66.667 0.00 0.00 0.00 4.30
948 969 1.805428 GAGATCAGCTCGCTCCCTCC 61.805 65.000 0.00 0.00 33.17 4.30
952 973 0.529555 GTTGGAGATCAGCTCGCTCC 60.530 60.000 15.76 15.76 46.60 4.70
968 989 5.587388 ATCAAAATGTATGCTCAGGGTTG 57.413 39.130 0.00 0.00 0.00 3.77
1161 1185 2.202676 CTTCTCCGCTCAGCCGAC 60.203 66.667 0.00 0.00 0.00 4.79
1171 1198 2.496817 CCCGAAGAGCCTTCTCCG 59.503 66.667 11.56 0.00 40.22 4.63
1371 1398 0.719465 CGGAATTTCAGAACCCGACG 59.281 55.000 10.74 0.00 42.49 5.12
1377 1404 1.730612 GGTCGGTCGGAATTTCAGAAC 59.269 52.381 4.69 4.69 0.00 3.01
1384 1411 1.214589 CGTCAGGTCGGTCGGAATT 59.785 57.895 0.00 0.00 0.00 2.17
1385 1412 2.707849 CCGTCAGGTCGGTCGGAAT 61.708 63.158 1.42 0.00 44.86 3.01
1397 1424 4.373116 CGACCCACCCACCGTCAG 62.373 72.222 0.00 0.00 0.00 3.51
1406 1433 4.629523 TTTCACGGCCGACCCACC 62.630 66.667 35.90 0.00 0.00 4.61
1407 1434 3.047877 CTTTCACGGCCGACCCAC 61.048 66.667 35.90 0.00 0.00 4.61
1410 1437 3.837570 AACCCTTTCACGGCCGACC 62.838 63.158 35.90 0.00 0.00 4.79
1411 1438 0.603439 TAAACCCTTTCACGGCCGAC 60.603 55.000 35.90 0.00 0.00 4.79
1412 1439 0.603439 GTAAACCCTTTCACGGCCGA 60.603 55.000 35.90 7.50 0.00 5.54
1413 1440 0.604511 AGTAAACCCTTTCACGGCCG 60.605 55.000 26.86 26.86 0.00 6.13
1414 1441 1.612676 AAGTAAACCCTTTCACGGCC 58.387 50.000 0.00 0.00 0.00 6.13
1415 1442 6.510638 CGATAATAAGTAAACCCTTTCACGGC 60.511 42.308 0.00 0.00 0.00 5.68
1416 1443 6.536224 ACGATAATAAGTAAACCCTTTCACGG 59.464 38.462 0.00 0.00 0.00 4.94
1417 1444 7.063780 ACACGATAATAAGTAAACCCTTTCACG 59.936 37.037 0.00 0.00 0.00 4.35
1418 1445 8.260270 ACACGATAATAAGTAAACCCTTTCAC 57.740 34.615 0.00 0.00 0.00 3.18
1419 1446 8.723311 CAACACGATAATAAGTAAACCCTTTCA 58.277 33.333 0.00 0.00 0.00 2.69
1420 1447 8.179615 CCAACACGATAATAAGTAAACCCTTTC 58.820 37.037 0.00 0.00 0.00 2.62
1421 1448 7.362315 GCCAACACGATAATAAGTAAACCCTTT 60.362 37.037 0.00 0.00 0.00 3.11
1422 1449 6.094464 GCCAACACGATAATAAGTAAACCCTT 59.906 38.462 0.00 0.00 0.00 3.95
1423 1450 5.587443 GCCAACACGATAATAAGTAAACCCT 59.413 40.000 0.00 0.00 0.00 4.34
1424 1451 5.354792 TGCCAACACGATAATAAGTAAACCC 59.645 40.000 0.00 0.00 0.00 4.11
1425 1452 6.425577 TGCCAACACGATAATAAGTAAACC 57.574 37.500 0.00 0.00 0.00 3.27
1428 1455 9.549078 TCATAATGCCAACACGATAATAAGTAA 57.451 29.630 0.00 0.00 0.00 2.24
1429 1456 9.203421 CTCATAATGCCAACACGATAATAAGTA 57.797 33.333 0.00 0.00 0.00 2.24
1430 1457 7.173218 CCTCATAATGCCAACACGATAATAAGT 59.827 37.037 0.00 0.00 0.00 2.24
1431 1458 7.521529 CCTCATAATGCCAACACGATAATAAG 58.478 38.462 0.00 0.00 0.00 1.73
1432 1459 6.072728 GCCTCATAATGCCAACACGATAATAA 60.073 38.462 0.00 0.00 0.00 1.40
1433 1460 5.411361 GCCTCATAATGCCAACACGATAATA 59.589 40.000 0.00 0.00 0.00 0.98
1434 1461 4.216257 GCCTCATAATGCCAACACGATAAT 59.784 41.667 0.00 0.00 0.00 1.28
1435 1462 3.563808 GCCTCATAATGCCAACACGATAA 59.436 43.478 0.00 0.00 0.00 1.75
1436 1463 3.138304 GCCTCATAATGCCAACACGATA 58.862 45.455 0.00 0.00 0.00 2.92
1437 1464 1.949525 GCCTCATAATGCCAACACGAT 59.050 47.619 0.00 0.00 0.00 3.73
1438 1465 1.339535 TGCCTCATAATGCCAACACGA 60.340 47.619 0.00 0.00 0.00 4.35
1439 1466 1.064505 CTGCCTCATAATGCCAACACG 59.935 52.381 0.00 0.00 0.00 4.49
1440 1467 2.357009 CTCTGCCTCATAATGCCAACAC 59.643 50.000 0.00 0.00 0.00 3.32
1441 1468 2.646930 CTCTGCCTCATAATGCCAACA 58.353 47.619 0.00 0.00 0.00 3.33
1442 1469 1.952296 CCTCTGCCTCATAATGCCAAC 59.048 52.381 0.00 0.00 0.00 3.77
1443 1470 1.751733 GCCTCTGCCTCATAATGCCAA 60.752 52.381 0.00 0.00 0.00 4.52
1444 1471 0.179009 GCCTCTGCCTCATAATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
1445 1472 0.179009 TGCCTCTGCCTCATAATGCC 60.179 55.000 0.00 0.00 36.33 4.40
1446 1473 0.950116 GTGCCTCTGCCTCATAATGC 59.050 55.000 0.00 0.00 36.33 3.56
1447 1474 1.134007 TGGTGCCTCTGCCTCATAATG 60.134 52.381 0.00 0.00 36.33 1.90
1448 1475 1.133976 GTGGTGCCTCTGCCTCATAAT 60.134 52.381 0.00 0.00 36.33 1.28
1449 1476 0.253044 GTGGTGCCTCTGCCTCATAA 59.747 55.000 0.00 0.00 36.33 1.90
1450 1477 1.626356 GGTGGTGCCTCTGCCTCATA 61.626 60.000 0.00 0.00 36.33 2.15
1451 1478 2.673523 GTGGTGCCTCTGCCTCAT 59.326 61.111 0.00 0.00 36.33 2.90
1452 1479 3.640407 GGTGGTGCCTCTGCCTCA 61.640 66.667 0.00 0.00 36.33 3.86
1453 1480 3.325753 AGGTGGTGCCTCTGCCTC 61.326 66.667 0.00 0.00 46.96 4.70
1472 1499 6.205101 AGGAAGTAGTATGTACAAAGACCG 57.795 41.667 0.00 0.00 0.00 4.79
1488 1515 4.939439 GCTTATTTTGGGACGAAGGAAGTA 59.061 41.667 0.00 0.00 0.00 2.24
1489 1516 3.756963 GCTTATTTTGGGACGAAGGAAGT 59.243 43.478 0.00 0.00 0.00 3.01
1490 1517 3.181510 CGCTTATTTTGGGACGAAGGAAG 60.182 47.826 0.00 0.00 0.00 3.46
1491 1518 2.745281 CGCTTATTTTGGGACGAAGGAA 59.255 45.455 0.00 0.00 0.00 3.36
1492 1519 2.289819 ACGCTTATTTTGGGACGAAGGA 60.290 45.455 0.00 0.00 0.00 3.36
1493 1520 2.081462 ACGCTTATTTTGGGACGAAGG 58.919 47.619 0.00 0.00 0.00 3.46
1494 1521 3.000727 AGACGCTTATTTTGGGACGAAG 58.999 45.455 0.00 0.00 0.00 3.79
1495 1522 3.048337 AGACGCTTATTTTGGGACGAA 57.952 42.857 0.00 0.00 0.00 3.85
1496 1523 2.754946 AGACGCTTATTTTGGGACGA 57.245 45.000 0.00 0.00 0.00 4.20
1497 1524 4.390909 AGTTAAGACGCTTATTTTGGGACG 59.609 41.667 1.12 0.00 0.00 4.79
1498 1525 5.874895 AGTTAAGACGCTTATTTTGGGAC 57.125 39.130 1.12 0.00 0.00 4.46
1499 1526 6.887626 AAAGTTAAGACGCTTATTTTGGGA 57.112 33.333 1.12 0.00 0.00 4.37
1567 1594 2.780010 CTCCCTCCATCCCACAATAAGT 59.220 50.000 0.00 0.00 0.00 2.24
1568 1595 2.780010 ACTCCCTCCATCCCACAATAAG 59.220 50.000 0.00 0.00 0.00 1.73
1569 1596 2.858644 ACTCCCTCCATCCCACAATAA 58.141 47.619 0.00 0.00 0.00 1.40
1570 1597 2.587060 ACTCCCTCCATCCCACAATA 57.413 50.000 0.00 0.00 0.00 1.90
1571 1598 2.127708 GTACTCCCTCCATCCCACAAT 58.872 52.381 0.00 0.00 0.00 2.71
1572 1599 1.080498 AGTACTCCCTCCATCCCACAA 59.920 52.381 0.00 0.00 0.00 3.33
1573 1600 0.716591 AGTACTCCCTCCATCCCACA 59.283 55.000 0.00 0.00 0.00 4.17
1574 1601 2.317973 GTAGTACTCCCTCCATCCCAC 58.682 57.143 0.00 0.00 0.00 4.61
1575 1602 1.133575 CGTAGTACTCCCTCCATCCCA 60.134 57.143 0.00 0.00 0.00 4.37
1576 1603 1.144503 TCGTAGTACTCCCTCCATCCC 59.855 57.143 0.00 0.00 0.00 3.85
1577 1604 2.653234 TCGTAGTACTCCCTCCATCC 57.347 55.000 0.00 0.00 0.00 3.51
1578 1605 2.885894 CCTTCGTAGTACTCCCTCCATC 59.114 54.545 0.00 0.00 0.00 3.51
1579 1606 2.244252 ACCTTCGTAGTACTCCCTCCAT 59.756 50.000 0.00 0.00 0.00 3.41
1580 1607 1.637553 ACCTTCGTAGTACTCCCTCCA 59.362 52.381 0.00 0.00 0.00 3.86
1581 1608 2.022934 CACCTTCGTAGTACTCCCTCC 58.977 57.143 0.00 0.00 0.00 4.30
1582 1609 2.422832 CACACCTTCGTAGTACTCCCTC 59.577 54.545 0.00 0.00 0.00 4.30
1583 1610 2.444421 CACACCTTCGTAGTACTCCCT 58.556 52.381 0.00 0.00 0.00 4.20
1584 1611 1.135170 GCACACCTTCGTAGTACTCCC 60.135 57.143 0.00 0.00 0.00 4.30
1585 1612 1.817447 AGCACACCTTCGTAGTACTCC 59.183 52.381 0.00 0.00 0.00 3.85
1586 1613 3.500014 GAAGCACACCTTCGTAGTACTC 58.500 50.000 0.00 0.00 40.49 2.59
1587 1614 3.572604 GAAGCACACCTTCGTAGTACT 57.427 47.619 0.00 0.00 40.49 2.73
1613 1640 3.460857 AAAATGTTTGCGGCCTTGTTA 57.539 38.095 0.00 0.00 0.00 2.41
1614 1641 2.323968 AAAATGTTTGCGGCCTTGTT 57.676 40.000 0.00 0.00 0.00 2.83
1615 1642 1.939255 CAAAAATGTTTGCGGCCTTGT 59.061 42.857 0.00 0.00 37.89 3.16
1616 1643 2.666836 CAAAAATGTTTGCGGCCTTG 57.333 45.000 0.00 0.00 37.89 3.61
1631 1658 7.147983 ACCAACACACACTATAAAAGAGCAAAA 60.148 33.333 0.00 0.00 0.00 2.44
1635 1662 5.468746 TCACCAACACACACTATAAAAGAGC 59.531 40.000 0.00 0.00 0.00 4.09
1636 1663 7.672983 ATCACCAACACACACTATAAAAGAG 57.327 36.000 0.00 0.00 0.00 2.85
1637 1664 8.349245 CAAATCACCAACACACACTATAAAAGA 58.651 33.333 0.00 0.00 0.00 2.52
1638 1665 8.134895 ACAAATCACCAACACACACTATAAAAG 58.865 33.333 0.00 0.00 0.00 2.27
1640 1667 7.575414 ACAAATCACCAACACACACTATAAA 57.425 32.000 0.00 0.00 0.00 1.40
1642 1669 7.446769 ACTACAAATCACCAACACACACTATA 58.553 34.615 0.00 0.00 0.00 1.31
1643 1670 6.296026 ACTACAAATCACCAACACACACTAT 58.704 36.000 0.00 0.00 0.00 2.12
1645 1672 4.523083 ACTACAAATCACCAACACACACT 58.477 39.130 0.00 0.00 0.00 3.55
1646 1673 4.893424 ACTACAAATCACCAACACACAC 57.107 40.909 0.00 0.00 0.00 3.82
1647 1674 5.065859 CAGAACTACAAATCACCAACACACA 59.934 40.000 0.00 0.00 0.00 3.72
1648 1675 5.510671 CAGAACTACAAATCACCAACACAC 58.489 41.667 0.00 0.00 0.00 3.82
1649 1676 4.036262 GCAGAACTACAAATCACCAACACA 59.964 41.667 0.00 0.00 0.00 3.72
1650 1677 4.537015 GCAGAACTACAAATCACCAACAC 58.463 43.478 0.00 0.00 0.00 3.32
1651 1678 3.568007 GGCAGAACTACAAATCACCAACA 59.432 43.478 0.00 0.00 0.00 3.33
1652 1679 3.821033 AGGCAGAACTACAAATCACCAAC 59.179 43.478 0.00 0.00 0.00 3.77
1663 1690 2.504367 TCCAAGCAAAGGCAGAACTAC 58.496 47.619 0.00 0.00 44.61 2.73
1691 1718 7.926555 AGTAGAGTCGGATTTTTACATACATGG 59.073 37.037 0.00 0.00 0.00 3.66
1730 1757 4.808895 TGTCGCATGGATTGTAATACTCAC 59.191 41.667 0.00 0.00 0.00 3.51
1731 1758 4.808895 GTGTCGCATGGATTGTAATACTCA 59.191 41.667 0.00 0.00 0.00 3.41
1732 1759 4.808895 TGTGTCGCATGGATTGTAATACTC 59.191 41.667 0.00 0.00 0.00 2.59
1741 1768 4.517285 AGAATAGTTGTGTCGCATGGATT 58.483 39.130 0.00 0.00 0.00 3.01
1746 1773 4.201851 GCAATGAGAATAGTTGTGTCGCAT 60.202 41.667 0.00 0.00 33.88 4.73
1780 1808 5.352016 CGTTCCCTGATATTGTTACGGAAAA 59.648 40.000 0.00 0.00 30.14 2.29
1784 1812 3.788937 ACGTTCCCTGATATTGTTACGG 58.211 45.455 0.00 0.00 32.54 4.02
1788 1816 4.079253 AGCAAACGTTCCCTGATATTGTT 58.921 39.130 0.00 0.00 0.00 2.83
1791 1819 2.423538 GCAGCAAACGTTCCCTGATATT 59.576 45.455 24.10 0.00 0.00 1.28
1795 1823 2.250939 CGCAGCAAACGTTCCCTGA 61.251 57.895 24.10 0.00 0.00 3.86
1797 1825 1.961277 CTCGCAGCAAACGTTCCCT 60.961 57.895 0.00 0.00 0.00 4.20
1807 1836 1.543944 TTGGGATCTCACTCGCAGCA 61.544 55.000 0.00 0.00 39.01 4.41
1809 1838 0.247460 TGTTGGGATCTCACTCGCAG 59.753 55.000 0.00 0.00 39.01 5.18
1828 1857 2.041819 TTTGGGGTTGGGGCGTTT 60.042 55.556 0.00 0.00 0.00 3.60
1844 1873 1.203162 TGGATTTGGACCATGTGGCTT 60.203 47.619 0.00 0.00 39.32 4.35
1852 1881 5.434091 AGCCATCCTTTGGATTTGGACCA 62.434 47.826 9.68 0.00 43.17 4.02
1859 1888 5.769835 TCAATAAGAGCCATCCTTTGGATT 58.230 37.500 0.00 0.00 46.58 3.01
1872 1901 8.915871 TTAGTGCAATTTTCATCAATAAGAGC 57.084 30.769 0.00 0.00 0.00 4.09
2200 2231 2.074353 CGTTCGTTGCCACGCATTG 61.074 57.895 5.28 0.00 46.70 2.82
2223 2254 1.746470 AAAAAGACGCTAATCCCCGG 58.254 50.000 0.00 0.00 0.00 5.73
2253 2286 2.073816 ACACTTGTAGCGGTTACATGC 58.926 47.619 14.79 0.00 41.72 4.06
2284 2317 6.314784 AGAATTTTGCATTACTCGTGTTAGC 58.685 36.000 0.00 0.00 0.00 3.09
2292 2325 7.086376 TGCTGAAAGAGAATTTTGCATTACTC 58.914 34.615 0.00 0.00 34.07 2.59
2299 2332 6.154445 TCTCAATGCTGAAAGAGAATTTTGC 58.846 36.000 0.00 0.00 34.45 3.68
2316 2349 7.092137 TGGAGTAAGATTTTGCATCTCAATG 57.908 36.000 0.00 0.00 34.12 2.82
2317 2350 7.893124 ATGGAGTAAGATTTTGCATCTCAAT 57.107 32.000 0.00 0.00 34.12 2.57
2318 2351 7.707624 AATGGAGTAAGATTTTGCATCTCAA 57.292 32.000 0.00 0.00 0.00 3.02
2319 2352 7.707624 AAATGGAGTAAGATTTTGCATCTCA 57.292 32.000 0.00 0.00 0.00 3.27
2320 2353 8.866956 CAAAAATGGAGTAAGATTTTGCATCTC 58.133 33.333 0.00 0.00 35.14 2.75
2321 2354 8.370182 ACAAAAATGGAGTAAGATTTTGCATCT 58.630 29.630 8.67 0.00 42.03 2.90
2322 2355 8.538409 ACAAAAATGGAGTAAGATTTTGCATC 57.462 30.769 8.67 0.00 42.03 3.91
2323 2356 8.776470 CAACAAAAATGGAGTAAGATTTTGCAT 58.224 29.630 8.67 0.00 42.03 3.96
2324 2357 7.254727 GCAACAAAAATGGAGTAAGATTTTGCA 60.255 33.333 8.67 0.00 42.03 4.08
2325 2358 7.071414 GCAACAAAAATGGAGTAAGATTTTGC 58.929 34.615 8.67 0.00 42.03 3.68
2326 2359 7.442062 AGGCAACAAAAATGGAGTAAGATTTTG 59.558 33.333 7.51 7.51 43.23 2.44
2327 2360 7.508687 AGGCAACAAAAATGGAGTAAGATTTT 58.491 30.769 0.00 0.00 41.41 1.82
2328 2361 7.066307 AGGCAACAAAAATGGAGTAAGATTT 57.934 32.000 0.00 0.00 41.41 2.17
2329 2362 6.670695 AGGCAACAAAAATGGAGTAAGATT 57.329 33.333 0.00 0.00 41.41 2.40
2330 2363 7.615365 TGATAGGCAACAAAAATGGAGTAAGAT 59.385 33.333 0.00 0.00 41.41 2.40
2331 2364 6.945435 TGATAGGCAACAAAAATGGAGTAAGA 59.055 34.615 0.00 0.00 41.41 2.10
2332 2365 7.156876 TGATAGGCAACAAAAATGGAGTAAG 57.843 36.000 0.00 0.00 41.41 2.34
2333 2366 7.615365 AGATGATAGGCAACAAAAATGGAGTAA 59.385 33.333 0.00 0.00 41.41 2.24
2334 2367 7.118723 AGATGATAGGCAACAAAAATGGAGTA 58.881 34.615 0.00 0.00 41.41 2.59
2335 2368 5.954150 AGATGATAGGCAACAAAAATGGAGT 59.046 36.000 0.00 0.00 41.41 3.85
2336 2369 6.461110 AGATGATAGGCAACAAAAATGGAG 57.539 37.500 0.00 0.00 41.41 3.86
2337 2370 6.855763 AAGATGATAGGCAACAAAAATGGA 57.144 33.333 0.00 0.00 41.41 3.41
2338 2371 7.492344 GGTAAAGATGATAGGCAACAAAAATGG 59.508 37.037 0.00 0.00 41.41 3.16
2339 2372 8.034215 TGGTAAAGATGATAGGCAACAAAAATG 58.966 33.333 0.00 0.00 41.41 2.32
2340 2373 8.133024 TGGTAAAGATGATAGGCAACAAAAAT 57.867 30.769 0.00 0.00 41.41 1.82
2341 2374 7.531857 TGGTAAAGATGATAGGCAACAAAAA 57.468 32.000 0.00 0.00 41.41 1.94
2342 2375 7.531857 TTGGTAAAGATGATAGGCAACAAAA 57.468 32.000 0.00 0.00 41.41 2.44
2343 2376 7.716799 ATTGGTAAAGATGATAGGCAACAAA 57.283 32.000 0.00 0.00 41.41 2.83
2344 2377 7.831690 TGTATTGGTAAAGATGATAGGCAACAA 59.168 33.333 0.00 0.00 41.41 2.83
2345 2378 7.342581 TGTATTGGTAAAGATGATAGGCAACA 58.657 34.615 0.00 0.00 41.41 3.33
2346 2379 7.801716 TGTATTGGTAAAGATGATAGGCAAC 57.198 36.000 0.00 0.00 0.00 4.17
2347 2380 7.502226 CCTTGTATTGGTAAAGATGATAGGCAA 59.498 37.037 0.00 0.00 0.00 4.52
2348 2381 6.998074 CCTTGTATTGGTAAAGATGATAGGCA 59.002 38.462 0.00 0.00 0.00 4.75
2349 2382 6.072452 GCCTTGTATTGGTAAAGATGATAGGC 60.072 42.308 0.00 0.00 35.66 3.93
2350 2383 6.998074 TGCCTTGTATTGGTAAAGATGATAGG 59.002 38.462 0.00 0.00 0.00 2.57
2351 2384 8.450578 TTGCCTTGTATTGGTAAAGATGATAG 57.549 34.615 0.00 0.00 0.00 2.08
2352 2385 8.995027 ATTGCCTTGTATTGGTAAAGATGATA 57.005 30.769 0.00 0.00 33.21 2.15
2353 2386 7.781693 AGATTGCCTTGTATTGGTAAAGATGAT 59.218 33.333 0.00 0.00 33.21 2.45
2354 2387 7.067372 CAGATTGCCTTGTATTGGTAAAGATGA 59.933 37.037 0.00 0.00 33.21 2.92
2355 2388 7.067372 TCAGATTGCCTTGTATTGGTAAAGATG 59.933 37.037 0.00 0.00 33.21 2.90
2356 2389 7.118723 TCAGATTGCCTTGTATTGGTAAAGAT 58.881 34.615 0.00 0.00 33.21 2.40
2357 2390 6.480763 TCAGATTGCCTTGTATTGGTAAAGA 58.519 36.000 0.00 0.00 33.21 2.52
2358 2391 6.757897 TCAGATTGCCTTGTATTGGTAAAG 57.242 37.500 0.00 0.00 33.21 1.85
2359 2392 7.716799 AATCAGATTGCCTTGTATTGGTAAA 57.283 32.000 0.00 0.00 33.21 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.