Multiple sequence alignment - TraesCS7A01G162200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G162200 chr7A 100.000 2764 0 0 1 2764 118449931 118447168 0.000000e+00 5105.0
1 TraesCS7A01G162200 chr7D 90.712 1335 91 21 522 1847 113427202 113425892 0.000000e+00 1748.0
2 TraesCS7A01G162200 chr7D 86.872 716 58 11 1957 2651 113425733 113425033 0.000000e+00 769.0
3 TraesCS7A01G162200 chr7D 83.476 351 39 10 2 352 113427537 113427206 2.670000e-80 309.0
4 TraesCS7A01G162200 chr7D 79.310 116 20 4 2651 2764 163213240 163213127 8.210000e-11 78.7
5 TraesCS7A01G162200 chr7B 89.946 1303 102 15 559 1847 72997725 72996438 0.000000e+00 1653.0
6 TraesCS7A01G162200 chr7B 84.201 538 65 11 2 535 72998228 72997707 3.180000e-139 505.0
7 TraesCS7A01G162200 chr7B 82.731 498 45 18 1875 2348 72996440 72995960 3.310000e-109 405.0
8 TraesCS7A01G162200 chr5B 81.955 133 20 3 2636 2764 567021612 567021744 2.910000e-20 110.0
9 TraesCS7A01G162200 chrUn 83.621 116 17 1 2651 2764 52138911 52139026 1.050000e-19 108.0
10 TraesCS7A01G162200 chr1B 82.258 124 18 4 2644 2764 106387845 106387723 1.350000e-18 104.0
11 TraesCS7A01G162200 chr3A 82.759 116 18 1 2651 2764 613161823 613161708 4.870000e-18 102.0
12 TraesCS7A01G162200 chr4B 78.947 133 21 4 2637 2764 92950208 92950078 1.760000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G162200 chr7A 118447168 118449931 2763 True 5105.000000 5105 100.000 1 2764 1 chr7A.!!$R1 2763
1 TraesCS7A01G162200 chr7D 113425033 113427537 2504 True 942.000000 1748 87.020 2 2651 3 chr7D.!!$R2 2649
2 TraesCS7A01G162200 chr7B 72995960 72998228 2268 True 854.333333 1653 85.626 2 2348 3 chr7B.!!$R1 2346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 365 0.452987 CCATCCGCATGGTGTTCTTG 59.547 55.0 0.0 0.0 44.46 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2227 0.31812 GTGTCCAGCACCAAAATGGG 59.682 55.0 0.87 0.0 43.37 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 5.299279 CACCACAACTTTGATAGTCTTGGTT 59.701 40.000 6.00 0.00 44.04 3.67
78 79 6.428159 CACAACTTTGATAGTCTTGGTTAGCT 59.572 38.462 0.00 0.00 35.54 3.32
84 85 6.294361 TGATAGTCTTGGTTAGCTTTGCTA 57.706 37.500 0.00 0.00 40.44 3.49
96 98 6.796705 TTAGCTTTGCTAAGTTCTGGTTAC 57.203 37.500 9.64 0.00 44.75 2.50
179 183 2.364324 GCCATGCATCCATCATTGACTT 59.636 45.455 0.00 0.00 0.00 3.01
180 184 3.798889 GCCATGCATCCATCATTGACTTG 60.799 47.826 0.00 0.00 0.00 3.16
193 197 6.267496 TCATTGACTTGATGAGAGTACGAA 57.733 37.500 0.00 0.00 0.00 3.85
195 199 6.808704 TCATTGACTTGATGAGAGTACGAAAG 59.191 38.462 0.00 0.00 0.00 2.62
231 235 2.030805 GCAACCATCAAGAGTCAACCAC 60.031 50.000 0.00 0.00 0.00 4.16
237 241 3.459232 TCAAGAGTCAACCACACTCAG 57.541 47.619 2.84 0.00 42.51 3.35
245 249 3.058224 GTCAACCACACTCAGCCAAATAC 60.058 47.826 0.00 0.00 0.00 1.89
252 256 3.004734 ACACTCAGCCAAATACTGCAAAC 59.995 43.478 0.00 0.00 35.04 2.93
262 266 6.868339 GCCAAATACTGCAAACTGTAGAAAAT 59.132 34.615 0.00 0.00 34.09 1.82
272 276 6.018016 GCAAACTGTAGAAAATGCCAAATTGT 60.018 34.615 0.00 0.00 0.00 2.71
276 280 9.777297 AACTGTAGAAAATGCCAAATTGTTAAT 57.223 25.926 0.00 0.00 0.00 1.40
341 345 9.719355 AAAATTGTAGAAAGGAAACAACAAGTT 57.281 25.926 0.00 0.00 43.89 2.66
359 363 4.643795 CCATCCGCATGGTGTTCT 57.356 55.556 0.00 0.00 44.46 3.01
360 364 2.872408 CCATCCGCATGGTGTTCTT 58.128 52.632 0.00 0.00 44.46 2.52
361 365 0.452987 CCATCCGCATGGTGTTCTTG 59.547 55.000 0.00 0.00 44.46 3.02
362 366 1.167851 CATCCGCATGGTGTTCTTGT 58.832 50.000 0.00 0.00 36.30 3.16
374 378 4.038042 TGGTGTTCTTGTGTGTGTGAAAAA 59.962 37.500 0.00 0.00 0.00 1.94
383 387 4.098654 TGTGTGTGTGAAAAATAACCCAGG 59.901 41.667 0.00 0.00 0.00 4.45
387 391 6.098982 TGTGTGTGAAAAATAACCCAGGAAAT 59.901 34.615 0.00 0.00 0.00 2.17
421 425 5.574188 ACTTCCTTATTTGGACATGAGCTT 58.426 37.500 0.00 0.00 35.58 3.74
425 429 5.045651 TCCTTATTTGGACATGAGCTTCTGA 60.046 40.000 0.00 0.00 0.00 3.27
433 437 3.859443 ACATGAGCTTCTGAAGTAGCTG 58.141 45.455 15.18 12.86 46.52 4.24
446 450 2.893637 AGTAGCTGAAACATGGTAGCG 58.106 47.619 0.00 0.00 40.92 4.26
449 453 1.806542 AGCTGAAACATGGTAGCGTTG 59.193 47.619 0.00 0.00 40.92 4.10
450 454 1.135689 GCTGAAACATGGTAGCGTTGG 60.136 52.381 0.00 0.00 0.00 3.77
461 465 4.255301 TGGTAGCGTTGGATTTATTTCGT 58.745 39.130 0.00 0.00 0.00 3.85
470 474 8.517862 GCGTTGGATTTATTTCGTAACATAAAC 58.482 33.333 0.00 0.00 29.66 2.01
480 485 6.746745 TTCGTAACATAAACCTGGGAAATC 57.253 37.500 0.00 0.00 0.00 2.17
481 486 5.187687 TCGTAACATAAACCTGGGAAATCC 58.812 41.667 0.00 0.00 0.00 3.01
484 489 3.617284 ACATAAACCTGGGAAATCCGAC 58.383 45.455 0.00 0.00 38.76 4.79
496 501 6.596621 TGGGAAATCCGACAATTATCATACA 58.403 36.000 0.00 0.00 38.76 2.29
514 519 3.928727 ACAGGAACTTGTGAATGCATG 57.071 42.857 0.00 0.00 34.60 4.06
515 520 3.225104 ACAGGAACTTGTGAATGCATGT 58.775 40.909 0.00 0.00 34.60 3.21
516 521 4.397420 ACAGGAACTTGTGAATGCATGTA 58.603 39.130 0.00 0.00 34.60 2.29
517 522 4.216257 ACAGGAACTTGTGAATGCATGTAC 59.784 41.667 0.00 3.06 34.60 2.90
518 523 4.216042 CAGGAACTTGTGAATGCATGTACA 59.784 41.667 0.00 6.04 34.60 2.90
519 524 4.216257 AGGAACTTGTGAATGCATGTACAC 59.784 41.667 18.61 18.61 27.25 2.90
520 525 4.023279 GGAACTTGTGAATGCATGTACACA 60.023 41.667 22.01 22.01 40.66 3.72
570 575 9.881649 ATGCTATATTGATAGTAACATCAGGTG 57.118 33.333 0.00 0.00 37.87 4.00
608 613 2.572191 TATCTCGTGTTACCTTGCCG 57.428 50.000 0.00 0.00 0.00 5.69
676 682 7.714377 AGAAGATGTAAATGATGAATTCGAGCT 59.286 33.333 0.04 0.00 0.00 4.09
677 683 8.893219 AAGATGTAAATGATGAATTCGAGCTA 57.107 30.769 0.04 0.00 0.00 3.32
712 718 1.819928 TGGATGTGAATGTGTTCCCG 58.180 50.000 0.00 0.00 33.26 5.14
784 800 8.620116 TTCTGTGTTGATGATAAAACAGATGA 57.380 30.769 11.15 0.00 42.45 2.92
804 820 4.926244 TGAAGACGTATCATTCTCTGAGC 58.074 43.478 0.00 0.00 37.28 4.26
806 822 3.206964 AGACGTATCATTCTCTGAGCGA 58.793 45.455 0.00 0.00 38.65 4.93
826 842 7.045126 AGCGATACTAGATATATTTCAGGGC 57.955 40.000 0.00 0.00 0.00 5.19
867 884 8.130307 ACAACACAAATATTGTTTGCTTCTTC 57.870 30.769 5.86 0.00 43.23 2.87
868 885 6.991485 ACACAAATATTGTTTGCTTCTTCG 57.009 33.333 5.86 0.00 43.23 3.79
869 886 5.920273 ACACAAATATTGTTTGCTTCTTCGG 59.080 36.000 5.86 0.00 43.23 4.30
872 889 6.640907 ACAAATATTGTTTGCTTCTTCGGAAC 59.359 34.615 5.86 0.00 42.22 3.62
967 984 8.664079 AGCATAAATCCTCTGAATACCTGTAAT 58.336 33.333 0.00 0.00 0.00 1.89
978 995 7.611467 TCTGAATACCTGTAATTCAAATGCAGT 59.389 33.333 0.00 0.00 34.39 4.40
979 996 8.121305 TGAATACCTGTAATTCAAATGCAGTT 57.879 30.769 0.00 0.00 32.11 3.16
980 997 8.028354 TGAATACCTGTAATTCAAATGCAGTTG 58.972 33.333 20.41 20.41 32.11 3.16
981 998 7.701539 ATACCTGTAATTCAAATGCAGTTGA 57.298 32.000 24.54 24.54 35.72 3.18
993 1010 1.610038 TGCAGTTGAGCAATCCAAGTG 59.390 47.619 0.00 0.00 42.46 3.16
1003 1020 2.159282 GCAATCCAAGTGAAGCAGATGG 60.159 50.000 0.00 0.00 0.00 3.51
1149 1166 2.811317 GAAGTCCGAGCTGTGGCG 60.811 66.667 0.00 0.00 44.37 5.69
1171 1188 4.154015 CGACCAAGTCATCATTGCACTTTA 59.846 41.667 0.00 0.00 32.09 1.85
1176 1193 6.750501 CCAAGTCATCATTGCACTTTATTGAG 59.249 38.462 0.00 0.00 0.00 3.02
1320 1337 1.616994 GCCCCCTTATCAGCAAACACT 60.617 52.381 0.00 0.00 0.00 3.55
1336 1353 0.976641 CACTCTGGCCAAGGTCTGTA 59.023 55.000 7.01 0.00 0.00 2.74
1337 1354 1.347707 CACTCTGGCCAAGGTCTGTAA 59.652 52.381 7.01 0.00 0.00 2.41
1370 1387 4.209288 CCATGAACCGTTAGATTCGATGTC 59.791 45.833 0.00 0.00 0.00 3.06
1421 1438 0.535780 CTGCTCTTGTCCCAGCACAA 60.536 55.000 0.00 0.00 40.80 3.33
1438 1455 5.051891 GCACAAGCTGACATTTCATTAGT 57.948 39.130 0.00 0.00 37.91 2.24
1478 1495 1.262417 TATGCGACAACCTCCTGACA 58.738 50.000 0.00 0.00 0.00 3.58
1523 1540 4.148825 AAGCCGATCTTCGCCGCT 62.149 61.111 0.00 0.00 38.64 5.52
1595 1612 0.246635 AGACGATCAACCAACTCGGG 59.753 55.000 0.00 0.00 40.22 5.14
1602 1619 1.702957 TCAACCAACTCGGGATTTCCT 59.297 47.619 0.00 0.00 40.22 3.36
1679 1696 1.134159 GCTGAGCCTTCACAGATCCAT 60.134 52.381 0.00 0.00 36.38 3.41
1706 1723 4.299547 AGGCTCGCGTGCAAGTCA 62.300 61.111 31.19 0.00 34.04 3.41
1709 1726 2.671177 GCTCGCGTGCAAGTCACAT 61.671 57.895 26.63 0.00 45.92 3.21
1720 1737 1.126113 CAAGTCACATACGTTCGGCAC 59.874 52.381 0.00 0.00 0.00 5.01
1733 1750 3.758931 GGCACGGGCAATTCACCC 61.759 66.667 13.89 3.27 44.63 4.61
1738 1755 2.828549 GGGCAATTCACCCGCGAT 60.829 61.111 8.23 0.00 37.67 4.58
1753 1770 3.001514 GATCCCTTCCAGCAGCCA 58.998 61.111 0.00 0.00 0.00 4.75
1765 1782 2.586792 CAGCCACCCTGTCTAGCC 59.413 66.667 0.00 0.00 36.79 3.93
1771 1788 1.685765 ACCCTGTCTAGCCGATGCA 60.686 57.895 0.00 0.00 41.13 3.96
1772 1789 1.068753 CCCTGTCTAGCCGATGCAG 59.931 63.158 0.00 0.00 41.13 4.41
1778 1799 1.589993 CTAGCCGATGCAGTGGTCG 60.590 63.158 8.63 4.76 41.13 4.79
1779 1800 2.004808 CTAGCCGATGCAGTGGTCGA 62.005 60.000 8.94 0.00 40.11 4.20
1788 1809 2.616960 TGCAGTGGTCGATATGTTCAC 58.383 47.619 0.00 0.00 0.00 3.18
1789 1810 2.233676 TGCAGTGGTCGATATGTTCACT 59.766 45.455 0.00 0.00 38.99 3.41
1791 1812 3.307242 GCAGTGGTCGATATGTTCACTTC 59.693 47.826 0.00 0.00 36.66 3.01
1792 1813 4.494484 CAGTGGTCGATATGTTCACTTCA 58.506 43.478 0.00 0.00 36.66 3.02
1793 1814 4.564372 CAGTGGTCGATATGTTCACTTCAG 59.436 45.833 0.00 0.00 36.66 3.02
1794 1815 3.865745 GTGGTCGATATGTTCACTTCAGG 59.134 47.826 0.00 0.00 0.00 3.86
1795 1816 3.513912 TGGTCGATATGTTCACTTCAGGT 59.486 43.478 0.00 0.00 0.00 4.00
1796 1817 3.865745 GGTCGATATGTTCACTTCAGGTG 59.134 47.826 0.00 0.00 46.60 4.00
1797 1818 4.495422 GTCGATATGTTCACTTCAGGTGT 58.505 43.478 0.00 0.00 45.50 4.16
1798 1819 4.929808 GTCGATATGTTCACTTCAGGTGTT 59.070 41.667 0.00 0.00 45.50 3.32
1799 1820 5.062308 GTCGATATGTTCACTTCAGGTGTTC 59.938 44.000 0.00 0.00 45.50 3.18
1800 1821 4.929211 CGATATGTTCACTTCAGGTGTTCA 59.071 41.667 0.00 0.00 45.50 3.18
1801 1822 5.408299 CGATATGTTCACTTCAGGTGTTCAA 59.592 40.000 0.00 0.00 45.50 2.69
1802 1823 6.401474 CGATATGTTCACTTCAGGTGTTCAAG 60.401 42.308 0.00 0.00 45.50 3.02
1803 1824 4.214986 TGTTCACTTCAGGTGTTCAAGA 57.785 40.909 0.00 0.00 45.50 3.02
1811 1832 3.995199 TCAGGTGTTCAAGAGCTTAGTG 58.005 45.455 0.00 0.00 0.00 2.74
1812 1833 3.388024 TCAGGTGTTCAAGAGCTTAGTGT 59.612 43.478 0.00 0.00 0.00 3.55
1815 1836 4.816925 AGGTGTTCAAGAGCTTAGTGTTTC 59.183 41.667 0.00 0.00 0.00 2.78
1816 1837 4.318831 GGTGTTCAAGAGCTTAGTGTTTCG 60.319 45.833 0.00 0.00 0.00 3.46
1817 1838 3.247648 TGTTCAAGAGCTTAGTGTTTCGC 59.752 43.478 0.00 0.00 0.00 4.70
1818 1839 2.058798 TCAAGAGCTTAGTGTTTCGCG 58.941 47.619 0.00 0.00 0.00 5.87
1820 1841 2.150397 AGAGCTTAGTGTTTCGCGTT 57.850 45.000 5.77 0.00 0.00 4.84
1831 1852 2.381665 TTTCGCGTTTTCTGTGCCGG 62.382 55.000 5.77 0.00 0.00 6.13
1833 1854 4.700365 GCGTTTTCTGTGCCGGCC 62.700 66.667 26.77 16.24 0.00 6.13
1834 1855 4.038080 CGTTTTCTGTGCCGGCCC 62.038 66.667 26.77 14.61 0.00 5.80
1835 1856 2.909965 GTTTTCTGTGCCGGCCCA 60.910 61.111 26.77 19.49 0.00 5.36
1836 1857 2.117206 TTTTCTGTGCCGGCCCAT 59.883 55.556 26.77 0.00 0.00 4.00
1837 1858 2.274645 TTTTCTGTGCCGGCCCATG 61.275 57.895 26.77 12.83 0.00 3.66
1838 1859 2.992817 TTTTCTGTGCCGGCCCATGT 62.993 55.000 26.77 0.00 0.00 3.21
1839 1860 3.918253 TTCTGTGCCGGCCCATGTC 62.918 63.158 26.77 7.88 0.00 3.06
1840 1861 4.415150 CTGTGCCGGCCCATGTCT 62.415 66.667 26.77 0.00 0.00 3.41
1841 1862 4.720902 TGTGCCGGCCCATGTCTG 62.721 66.667 26.77 0.00 0.00 3.51
1852 1873 2.698855 CCATGTCTGGGTGTAAGGAG 57.301 55.000 0.00 0.00 39.04 3.69
1853 1874 1.909302 CCATGTCTGGGTGTAAGGAGT 59.091 52.381 0.00 0.00 39.04 3.85
1854 1875 2.355108 CCATGTCTGGGTGTAAGGAGTG 60.355 54.545 0.00 0.00 39.04 3.51
1855 1876 1.348064 TGTCTGGGTGTAAGGAGTGG 58.652 55.000 0.00 0.00 0.00 4.00
1856 1877 1.132977 TGTCTGGGTGTAAGGAGTGGA 60.133 52.381 0.00 0.00 0.00 4.02
1857 1878 1.550976 GTCTGGGTGTAAGGAGTGGAG 59.449 57.143 0.00 0.00 0.00 3.86
1858 1879 1.431633 TCTGGGTGTAAGGAGTGGAGA 59.568 52.381 0.00 0.00 0.00 3.71
1859 1880 1.827969 CTGGGTGTAAGGAGTGGAGAG 59.172 57.143 0.00 0.00 0.00 3.20
1860 1881 1.149288 TGGGTGTAAGGAGTGGAGAGT 59.851 52.381 0.00 0.00 0.00 3.24
1861 1882 2.380932 TGGGTGTAAGGAGTGGAGAGTA 59.619 50.000 0.00 0.00 0.00 2.59
1862 1883 3.012502 TGGGTGTAAGGAGTGGAGAGTAT 59.987 47.826 0.00 0.00 0.00 2.12
1865 1886 4.896482 GGTGTAAGGAGTGGAGAGTATCAT 59.104 45.833 0.00 0.00 37.82 2.45
1868 1889 5.830457 TGTAAGGAGTGGAGAGTATCATCAG 59.170 44.000 0.00 0.00 37.82 2.90
1869 1890 3.843422 AGGAGTGGAGAGTATCATCAGG 58.157 50.000 0.00 0.00 37.82 3.86
1872 1893 3.957497 GAGTGGAGAGTATCATCAGGTGT 59.043 47.826 0.00 0.00 37.82 4.16
1873 1894 4.357325 AGTGGAGAGTATCATCAGGTGTT 58.643 43.478 0.00 0.00 37.82 3.32
1879 1900 6.128172 GGAGAGTATCATCAGGTGTTTGTTTG 60.128 42.308 0.00 0.00 37.82 2.93
1894 1915 2.209273 TGTTTGTCGGTGATGTCTGTG 58.791 47.619 0.00 0.00 0.00 3.66
1897 1918 3.737032 TTGTCGGTGATGTCTGTGTTA 57.263 42.857 0.00 0.00 0.00 2.41
1901 1922 2.365941 TCGGTGATGTCTGTGTTAACCA 59.634 45.455 2.48 0.00 0.00 3.67
1903 1924 3.059188 CGGTGATGTCTGTGTTAACCAAC 60.059 47.826 2.48 0.00 35.06 3.77
1904 1925 3.059188 GGTGATGTCTGTGTTAACCAACG 60.059 47.826 2.48 0.00 37.48 4.10
1905 1926 3.558418 GTGATGTCTGTGTTAACCAACGT 59.442 43.478 2.48 4.21 37.48 3.99
1906 1927 3.558006 TGATGTCTGTGTTAACCAACGTG 59.442 43.478 2.48 0.00 37.48 4.49
1907 1928 2.975266 TGTCTGTGTTAACCAACGTGT 58.025 42.857 2.48 0.00 37.48 4.49
1908 1929 2.931325 TGTCTGTGTTAACCAACGTGTC 59.069 45.455 2.48 0.00 37.48 3.67
1909 1930 2.034339 GTCTGTGTTAACCAACGTGTCG 60.034 50.000 2.48 0.00 37.48 4.35
1910 1931 1.928503 CTGTGTTAACCAACGTGTCGT 59.071 47.619 2.48 0.00 43.97 4.34
1911 1932 3.114809 CTGTGTTAACCAACGTGTCGTA 58.885 45.455 2.48 0.00 39.99 3.43
1912 1933 2.857152 TGTGTTAACCAACGTGTCGTAC 59.143 45.455 2.48 0.00 39.99 3.67
1914 1935 2.100584 TGTTAACCAACGTGTCGTACCT 59.899 45.455 2.48 0.00 39.99 3.08
1915 1936 3.316588 TGTTAACCAACGTGTCGTACCTA 59.683 43.478 2.48 0.00 39.99 3.08
1916 1937 4.022416 TGTTAACCAACGTGTCGTACCTAT 60.022 41.667 2.48 0.00 39.99 2.57
1917 1938 2.642139 ACCAACGTGTCGTACCTATG 57.358 50.000 0.00 0.00 39.99 2.23
1918 1939 1.203052 ACCAACGTGTCGTACCTATGG 59.797 52.381 7.94 7.94 39.99 2.74
1919 1940 1.473677 CCAACGTGTCGTACCTATGGA 59.526 52.381 0.00 0.00 39.99 3.41
1920 1941 2.094597 CCAACGTGTCGTACCTATGGAA 60.095 50.000 0.00 0.00 39.99 3.53
1921 1942 2.919229 CAACGTGTCGTACCTATGGAAC 59.081 50.000 0.00 0.00 39.99 3.62
1963 2069 3.884091 ACTGTACTAGAGATGTTAGGGCG 59.116 47.826 0.00 0.00 0.00 6.13
1970 2076 4.107127 AGAGATGTTAGGGCGTAGAGAT 57.893 45.455 0.00 0.00 0.00 2.75
1972 2078 4.521256 AGAGATGTTAGGGCGTAGAGATTC 59.479 45.833 0.00 0.00 0.00 2.52
2009 2124 7.984422 TCCAGCCATAATGTTATGTTATCTG 57.016 36.000 10.82 10.84 39.04 2.90
2029 2144 1.936547 GTGGATGAATCTGCTTCCGTC 59.063 52.381 0.00 0.00 35.47 4.79
2033 2148 1.428448 TGAATCTGCTTCCGTCGTTG 58.572 50.000 0.00 0.00 32.49 4.10
2067 2187 3.243839 ACTGTGATGGTTTGCAAATGACC 60.244 43.478 16.21 13.41 0.00 4.02
2107 2227 4.021632 AGCAAGAGGCAAAATTCTCTTTCC 60.022 41.667 4.77 1.17 45.01 3.13
2153 2280 2.362397 GTCTGCACTATCAGGATCGGAA 59.638 50.000 0.00 0.00 34.91 4.30
2156 2283 2.499693 TGCACTATCAGGATCGGAACAA 59.500 45.455 0.00 0.00 0.00 2.83
2161 2288 3.912496 ATCAGGATCGGAACAATGTGA 57.088 42.857 0.00 0.00 0.00 3.58
2178 2305 2.027073 GAGAATGTGACGTGGCGCA 61.027 57.895 10.83 0.00 0.00 6.09
2203 2330 3.331478 AGTGCTCTGGTGAATCAGAAG 57.669 47.619 0.00 0.00 42.46 2.85
2211 2338 2.369860 TGGTGAATCAGAAGCTGTGACT 59.630 45.455 1.18 0.00 32.61 3.41
2212 2339 2.740981 GGTGAATCAGAAGCTGTGACTG 59.259 50.000 1.18 3.21 32.61 3.51
2267 2394 2.971598 ATCAGGTGGAGGTTGCGGG 61.972 63.158 0.00 0.00 0.00 6.13
2286 2413 1.129326 GTTCAGTTCAGTCACCGTCG 58.871 55.000 0.00 0.00 0.00 5.12
2296 2423 2.030562 CACCGTCGTGGCCTTCTT 59.969 61.111 3.32 0.00 43.94 2.52
2297 2424 2.030562 ACCGTCGTGGCCTTCTTG 59.969 61.111 3.32 0.00 43.94 3.02
2298 2425 3.423154 CCGTCGTGGCCTTCTTGC 61.423 66.667 3.32 0.00 0.00 4.01
2299 2426 2.357517 CGTCGTGGCCTTCTTGCT 60.358 61.111 3.32 0.00 0.00 3.91
2300 2427 1.080093 CGTCGTGGCCTTCTTGCTA 60.080 57.895 3.32 0.00 0.00 3.49
2301 2428 1.352156 CGTCGTGGCCTTCTTGCTAC 61.352 60.000 3.32 0.00 39.14 3.58
2302 2429 0.037232 GTCGTGGCCTTCTTGCTACT 60.037 55.000 3.32 0.00 40.23 2.57
2303 2430 0.246635 TCGTGGCCTTCTTGCTACTC 59.753 55.000 3.32 0.00 40.23 2.59
2304 2431 0.741221 CGTGGCCTTCTTGCTACTCC 60.741 60.000 3.32 0.00 40.23 3.85
2305 2432 0.615850 GTGGCCTTCTTGCTACTCCT 59.384 55.000 3.32 0.00 39.39 3.69
2306 2433 1.003696 GTGGCCTTCTTGCTACTCCTT 59.996 52.381 3.32 0.00 39.39 3.36
2307 2434 2.236395 GTGGCCTTCTTGCTACTCCTTA 59.764 50.000 3.32 0.00 39.39 2.69
2308 2435 2.501723 TGGCCTTCTTGCTACTCCTTAG 59.498 50.000 3.32 0.00 0.00 2.18
2309 2436 2.502130 GGCCTTCTTGCTACTCCTTAGT 59.498 50.000 0.00 0.00 39.91 2.24
2329 2478 2.018355 TGCTACCACCAGTAACAGGA 57.982 50.000 0.00 0.00 0.00 3.86
2355 2506 0.759959 TGGTTTCGTAGCCCACAAGA 59.240 50.000 0.00 0.00 0.00 3.02
2362 2513 0.949105 GTAGCCCACAAGACCACACG 60.949 60.000 0.00 0.00 0.00 4.49
2402 2553 1.355210 GGTTGGTGCAGTGTTGACG 59.645 57.895 0.00 0.00 0.00 4.35
2407 2558 2.106131 TGCAGTGTTGACGCGTCT 59.894 55.556 36.27 16.27 0.00 4.18
2447 2598 2.510238 GCTCCAGCGCGTCAGAAT 60.510 61.111 8.43 0.00 0.00 2.40
2488 2640 5.796424 ATGAAACTCCAAGAAAATGCAGT 57.204 34.783 0.00 0.00 0.00 4.40
2489 2641 4.935702 TGAAACTCCAAGAAAATGCAGTG 58.064 39.130 0.00 0.00 0.00 3.66
2493 2645 4.210331 ACTCCAAGAAAATGCAGTGAAGT 58.790 39.130 0.00 0.00 0.00 3.01
2504 2656 3.443045 GTGAAGTGGCGGCCATGG 61.443 66.667 26.68 7.63 35.28 3.66
2519 2671 4.023193 CGGCCATGGAATTATAGTTGGAAC 60.023 45.833 18.40 0.00 0.00 3.62
2535 2687 6.054941 AGTTGGAACATTTCAACCAAAATCC 58.945 36.000 11.43 0.00 42.71 3.01
2537 2689 4.100189 TGGAACATTTCAACCAAAATCCGT 59.900 37.500 0.00 0.00 32.06 4.69
2540 2694 5.269505 ACATTTCAACCAAAATCCGTGAA 57.730 34.783 0.00 0.00 0.00 3.18
2563 2717 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
2589 2748 0.814410 TTGAGGTGTTTTGCGGCGTA 60.814 50.000 9.37 0.00 0.00 4.42
2604 2763 2.605818 CGGCGTAGAAAATTCCGAATCA 59.394 45.455 0.00 0.00 42.43 2.57
2608 2767 4.786575 GCGTAGAAAATTCCGAATCACAAC 59.213 41.667 0.00 0.00 0.00 3.32
2615 2774 8.792633 AGAAAATTCCGAATCACAACTAAATGA 58.207 29.630 0.00 0.00 0.00 2.57
2628 2787 9.513906 TCACAACTAAATGATGAACCTGATAAA 57.486 29.630 0.00 0.00 0.00 1.40
2629 2788 9.559958 CACAACTAAATGATGAACCTGATAAAC 57.440 33.333 0.00 0.00 0.00 2.01
2630 2789 8.739972 ACAACTAAATGATGAACCTGATAAACC 58.260 33.333 0.00 0.00 0.00 3.27
2632 2791 7.643123 ACTAAATGATGAACCTGATAAACCCT 58.357 34.615 0.00 0.00 0.00 4.34
2669 2828 5.995565 AAAACCAACTTAAGGGCTAATCC 57.004 39.130 7.53 0.00 0.00 3.01
2670 2829 4.948062 AACCAACTTAAGGGCTAATCCT 57.052 40.909 7.53 0.00 39.17 3.24
2671 2830 4.505324 ACCAACTTAAGGGCTAATCCTC 57.495 45.455 7.53 0.00 35.80 3.71
2672 2831 3.118371 ACCAACTTAAGGGCTAATCCTCG 60.118 47.826 7.53 0.00 35.80 4.63
2673 2832 3.118371 CCAACTTAAGGGCTAATCCTCGT 60.118 47.826 7.53 0.00 35.80 4.18
2674 2833 4.514401 CAACTTAAGGGCTAATCCTCGTT 58.486 43.478 7.53 0.00 35.80 3.85
2675 2834 4.138487 ACTTAAGGGCTAATCCTCGTTG 57.862 45.455 7.53 0.00 35.80 4.10
2676 2835 3.773119 ACTTAAGGGCTAATCCTCGTTGA 59.227 43.478 7.53 0.00 35.80 3.18
2677 2836 2.693267 AAGGGCTAATCCTCGTTGAC 57.307 50.000 0.00 0.00 35.80 3.18
2678 2837 1.568504 AGGGCTAATCCTCGTTGACA 58.431 50.000 0.00 0.00 29.56 3.58
2679 2838 2.119495 AGGGCTAATCCTCGTTGACAT 58.881 47.619 0.00 0.00 29.56 3.06
2680 2839 2.505819 AGGGCTAATCCTCGTTGACATT 59.494 45.455 0.00 0.00 29.56 2.71
2681 2840 3.054361 AGGGCTAATCCTCGTTGACATTT 60.054 43.478 0.00 0.00 29.56 2.32
2682 2841 3.694566 GGGCTAATCCTCGTTGACATTTT 59.305 43.478 0.00 0.00 34.39 1.82
2683 2842 4.157840 GGGCTAATCCTCGTTGACATTTTT 59.842 41.667 0.00 0.00 34.39 1.94
2684 2843 5.355910 GGGCTAATCCTCGTTGACATTTTTA 59.644 40.000 0.00 0.00 34.39 1.52
2685 2844 6.039382 GGGCTAATCCTCGTTGACATTTTTAT 59.961 38.462 0.00 0.00 34.39 1.40
2686 2845 7.227910 GGGCTAATCCTCGTTGACATTTTTATA 59.772 37.037 0.00 0.00 34.39 0.98
2687 2846 8.283291 GGCTAATCCTCGTTGACATTTTTATAG 58.717 37.037 0.00 0.00 0.00 1.31
2688 2847 9.042008 GCTAATCCTCGTTGACATTTTTATAGA 57.958 33.333 0.00 0.00 0.00 1.98
2691 2850 9.667107 AATCCTCGTTGACATTTTTATAGAAGA 57.333 29.630 0.00 0.00 0.00 2.87
2692 2851 9.667107 ATCCTCGTTGACATTTTTATAGAAGAA 57.333 29.630 0.00 0.00 0.00 2.52
2693 2852 9.496873 TCCTCGTTGACATTTTTATAGAAGAAA 57.503 29.630 0.00 0.00 0.00 2.52
2694 2853 9.543018 CCTCGTTGACATTTTTATAGAAGAAAC 57.457 33.333 0.00 0.00 0.00 2.78
2697 2856 9.543018 CGTTGACATTTTTATAGAAGAAACTCC 57.457 33.333 0.00 0.00 0.00 3.85
2700 2859 9.567776 TGACATTTTTATAGAAGAAACTCCACA 57.432 29.630 0.00 0.00 0.00 4.17
2703 2862 9.346725 CATTTTTATAGAAGAAACTCCACAAGC 57.653 33.333 0.00 0.00 0.00 4.01
2704 2863 8.458573 TTTTTATAGAAGAAACTCCACAAGCA 57.541 30.769 0.00 0.00 0.00 3.91
2705 2864 8.635765 TTTTATAGAAGAAACTCCACAAGCAT 57.364 30.769 0.00 0.00 0.00 3.79
2706 2865 7.849804 TTATAGAAGAAACTCCACAAGCATC 57.150 36.000 0.00 0.00 0.00 3.91
2707 2866 4.090761 AGAAGAAACTCCACAAGCATCA 57.909 40.909 0.00 0.00 0.00 3.07
2708 2867 4.660168 AGAAGAAACTCCACAAGCATCAT 58.340 39.130 0.00 0.00 0.00 2.45
2709 2868 5.809001 AGAAGAAACTCCACAAGCATCATA 58.191 37.500 0.00 0.00 0.00 2.15
2710 2869 6.421485 AGAAGAAACTCCACAAGCATCATAT 58.579 36.000 0.00 0.00 0.00 1.78
2711 2870 6.318144 AGAAGAAACTCCACAAGCATCATATG 59.682 38.462 0.00 0.00 0.00 1.78
2712 2871 5.503927 AGAAACTCCACAAGCATCATATGT 58.496 37.500 1.90 0.00 0.00 2.29
2713 2872 5.587844 AGAAACTCCACAAGCATCATATGTC 59.412 40.000 1.90 0.00 0.00 3.06
2714 2873 3.813443 ACTCCACAAGCATCATATGTCC 58.187 45.455 1.90 0.00 0.00 4.02
2715 2874 2.804527 CTCCACAAGCATCATATGTCCG 59.195 50.000 1.90 0.00 0.00 4.79
2716 2875 2.433970 TCCACAAGCATCATATGTCCGA 59.566 45.455 1.90 0.00 0.00 4.55
2717 2876 2.804527 CCACAAGCATCATATGTCCGAG 59.195 50.000 1.90 0.00 0.00 4.63
2718 2877 3.461061 CACAAGCATCATATGTCCGAGT 58.539 45.455 1.90 0.00 0.00 4.18
2719 2878 3.492383 CACAAGCATCATATGTCCGAGTC 59.508 47.826 1.90 0.00 0.00 3.36
2720 2879 2.713895 AGCATCATATGTCCGAGTCG 57.286 50.000 5.29 5.29 0.00 4.18
2731 2890 2.401967 CCGAGTCGGGATTCGTACT 58.598 57.895 24.39 0.00 44.15 2.73
2732 2891 0.307146 CCGAGTCGGGATTCGTACTC 59.693 60.000 24.39 0.00 44.15 2.59
2733 2892 1.012086 CGAGTCGGGATTCGTACTCA 58.988 55.000 4.10 0.00 41.53 3.41
2734 2893 1.003759 CGAGTCGGGATTCGTACTCAG 60.004 57.143 4.10 0.00 41.53 3.35
2735 2894 2.286872 GAGTCGGGATTCGTACTCAGA 58.713 52.381 0.00 0.00 41.33 3.27
2736 2895 2.879646 GAGTCGGGATTCGTACTCAGAT 59.120 50.000 0.00 0.00 41.33 2.90
2737 2896 2.619177 AGTCGGGATTCGTACTCAGATG 59.381 50.000 0.00 0.00 40.32 2.90
2738 2897 1.954382 TCGGGATTCGTACTCAGATGG 59.046 52.381 0.00 0.00 40.32 3.51
2739 2898 1.000163 CGGGATTCGTACTCAGATGGG 60.000 57.143 0.00 0.00 0.00 4.00
2740 2899 1.270358 GGGATTCGTACTCAGATGGGC 60.270 57.143 0.00 0.00 0.00 5.36
2741 2900 1.689273 GGATTCGTACTCAGATGGGCT 59.311 52.381 0.00 0.00 0.00 5.19
2742 2901 2.546795 GGATTCGTACTCAGATGGGCTG 60.547 54.545 0.00 0.00 46.31 4.85
2743 2902 0.824109 TTCGTACTCAGATGGGCTGG 59.176 55.000 0.00 0.00 44.98 4.85
2744 2903 1.227380 CGTACTCAGATGGGCTGGC 60.227 63.158 0.00 0.00 44.98 4.85
2745 2904 1.907739 GTACTCAGATGGGCTGGCA 59.092 57.895 2.88 0.00 44.98 4.92
2746 2905 0.179062 GTACTCAGATGGGCTGGCAG 60.179 60.000 10.94 10.94 44.98 4.85
2747 2906 1.976132 TACTCAGATGGGCTGGCAGC 61.976 60.000 30.93 30.93 44.98 5.25
2748 2907 3.332385 TCAGATGGGCTGGCAGCA 61.332 61.111 37.49 21.31 44.75 4.41
2749 2908 2.361992 CAGATGGGCTGGCAGCAA 60.362 61.111 37.49 26.37 44.75 3.91
2750 2909 1.756950 CAGATGGGCTGGCAGCAAT 60.757 57.895 37.49 29.49 44.75 3.56
2751 2910 1.455217 AGATGGGCTGGCAGCAATC 60.455 57.895 37.49 33.97 44.75 2.67
2752 2911 1.455217 GATGGGCTGGCAGCAATCT 60.455 57.895 37.49 20.39 44.75 2.40
2753 2912 1.453762 GATGGGCTGGCAGCAATCTC 61.454 60.000 37.49 23.87 44.75 2.75
2754 2913 2.044650 GGGCTGGCAGCAATCTCA 60.045 61.111 37.49 0.00 44.75 3.27
2755 2914 2.119655 GGGCTGGCAGCAATCTCAG 61.120 63.158 37.49 0.50 44.75 3.35
2756 2915 2.799371 GCTGGCAGCAATCTCAGC 59.201 61.111 33.33 4.00 44.34 4.26
2757 2916 1.749638 GCTGGCAGCAATCTCAGCT 60.750 57.895 33.33 0.00 46.29 4.24
2762 2921 3.084304 AGCAATCTCAGCTGCCCA 58.916 55.556 9.47 0.00 41.61 5.36
2763 2922 1.077644 AGCAATCTCAGCTGCCCAG 60.078 57.895 9.47 1.01 41.61 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.808543 GGCAAGTTACCACAGAAGTCAG 59.191 50.000 0.00 0.00 0.00 3.51
48 49 3.412386 AGACTATCAAAGTTGTGGTGGC 58.588 45.455 0.00 0.00 39.07 5.01
74 75 5.221762 TGGTAACCAGAACTTAGCAAAGCTA 60.222 40.000 0.00 0.00 40.44 3.32
134 138 7.010738 GGCATGAAACCATCAAAGATATTGTTG 59.989 37.037 0.00 0.00 42.54 3.33
171 175 6.587990 ACTTTCGTACTCTCATCAAGTCAATG 59.412 38.462 0.00 0.00 0.00 2.82
173 177 6.085555 ACTTTCGTACTCTCATCAAGTCAA 57.914 37.500 0.00 0.00 0.00 3.18
179 183 3.427573 TGGGACTTTCGTACTCTCATCA 58.572 45.455 0.00 0.00 0.00 3.07
180 184 3.735514 GCTGGGACTTTCGTACTCTCATC 60.736 52.174 0.00 0.00 0.00 2.92
190 194 0.250234 TGGAGATGCTGGGACTTTCG 59.750 55.000 0.00 0.00 0.00 3.46
193 197 1.203441 TGCTGGAGATGCTGGGACTT 61.203 55.000 0.00 0.00 0.00 3.01
195 199 1.028868 GTTGCTGGAGATGCTGGGAC 61.029 60.000 0.00 0.00 0.00 4.46
203 207 2.575279 ACTCTTGATGGTTGCTGGAGAT 59.425 45.455 0.00 0.00 0.00 2.75
231 235 3.254166 AGTTTGCAGTATTTGGCTGAGTG 59.746 43.478 0.00 0.00 36.12 3.51
237 241 5.371115 TTCTACAGTTTGCAGTATTTGGC 57.629 39.130 0.00 0.00 0.00 4.52
245 249 4.241590 TGGCATTTTCTACAGTTTGCAG 57.758 40.909 0.00 0.00 0.00 4.41
262 266 7.151999 AGTCGTCATAATTAACAATTTGGCA 57.848 32.000 0.78 0.00 32.38 4.92
272 276 6.423905 GCTCCAATGCTAGTCGTCATAATTAA 59.576 38.462 0.00 0.00 0.00 1.40
276 280 3.492656 GGCTCCAATGCTAGTCGTCATAA 60.493 47.826 0.00 0.00 0.00 1.90
281 285 1.264749 TGGGCTCCAATGCTAGTCGT 61.265 55.000 0.00 0.00 0.00 4.34
310 314 9.758651 GTTGTTTCCTTTCTACAATTTTACCAT 57.241 29.630 0.00 0.00 34.63 3.55
359 363 5.394663 CCTGGGTTATTTTTCACACACACAA 60.395 40.000 0.00 0.00 0.00 3.33
360 364 4.098654 CCTGGGTTATTTTTCACACACACA 59.901 41.667 0.00 0.00 0.00 3.72
361 365 4.339814 TCCTGGGTTATTTTTCACACACAC 59.660 41.667 0.00 0.00 0.00 3.82
362 366 4.537751 TCCTGGGTTATTTTTCACACACA 58.462 39.130 0.00 0.00 0.00 3.72
374 378 4.401925 GCATCTAGCATTTCCTGGGTTAT 58.598 43.478 0.00 0.00 44.79 1.89
387 391 6.803358 TCCAAATAAGGAAGTTGCATCTAGCA 60.803 38.462 0.00 0.00 43.08 3.49
398 402 5.184892 AGCTCATGTCCAAATAAGGAAGT 57.815 39.130 0.00 0.00 39.92 3.01
404 408 6.240894 ACTTCAGAAGCTCATGTCCAAATAA 58.759 36.000 10.33 0.00 0.00 1.40
407 411 4.090761 ACTTCAGAAGCTCATGTCCAAA 57.909 40.909 10.33 0.00 0.00 3.28
421 425 4.623932 ACCATGTTTCAGCTACTTCAGA 57.376 40.909 0.00 0.00 0.00 3.27
425 429 3.262420 CGCTACCATGTTTCAGCTACTT 58.738 45.455 0.00 0.00 31.74 2.24
433 437 4.434713 AAATCCAACGCTACCATGTTTC 57.565 40.909 0.00 0.00 0.00 2.78
449 453 8.132995 CCCAGGTTTATGTTACGAAATAAATCC 58.867 37.037 0.00 0.00 32.19 3.01
450 454 8.895737 TCCCAGGTTTATGTTACGAAATAAATC 58.104 33.333 0.00 0.00 32.47 2.17
461 465 5.187687 GTCGGATTTCCCAGGTTTATGTTA 58.812 41.667 0.00 0.00 34.14 2.41
470 474 4.460263 TGATAATTGTCGGATTTCCCAGG 58.540 43.478 0.00 0.00 34.14 4.45
480 485 6.538742 ACAAGTTCCTGTATGATAATTGTCGG 59.461 38.462 0.00 0.00 0.00 4.79
481 486 7.277760 TCACAAGTTCCTGTATGATAATTGTCG 59.722 37.037 0.00 0.00 0.00 4.35
484 489 9.726232 CATTCACAAGTTCCTGTATGATAATTG 57.274 33.333 0.00 0.00 0.00 2.32
496 501 4.216257 GTGTACATGCATTCACAAGTTCCT 59.784 41.667 16.55 0.00 0.00 3.36
514 519 7.097192 TCTGTATCTGAAGACCAAATGTGTAC 58.903 38.462 0.00 0.00 0.00 2.90
515 520 7.239763 TCTGTATCTGAAGACCAAATGTGTA 57.760 36.000 0.00 0.00 0.00 2.90
516 521 6.114187 TCTGTATCTGAAGACCAAATGTGT 57.886 37.500 0.00 0.00 0.00 3.72
517 522 7.120285 ACATTCTGTATCTGAAGACCAAATGTG 59.880 37.037 14.99 0.00 0.00 3.21
518 523 7.170965 ACATTCTGTATCTGAAGACCAAATGT 58.829 34.615 12.41 12.41 0.00 2.71
519 524 7.621428 ACATTCTGTATCTGAAGACCAAATG 57.379 36.000 11.65 11.65 0.00 2.32
520 525 9.334947 CATACATTCTGTATCTGAAGACCAAAT 57.665 33.333 0.00 0.00 41.28 2.32
544 549 9.881649 CACCTGATGTTACTATCAATATAGCAT 57.118 33.333 0.00 0.00 39.01 3.79
552 557 6.850752 TCTGACACCTGATGTTACTATCAA 57.149 37.500 0.00 0.00 43.56 2.57
597 602 0.872388 CACTGGAACGGCAAGGTAAC 59.128 55.000 0.00 0.00 39.14 2.50
600 605 1.227853 GACACTGGAACGGCAAGGT 60.228 57.895 0.00 0.00 39.14 3.50
608 613 5.455056 TTGAGAGAAGTAGACACTGGAAC 57.545 43.478 0.00 0.00 34.36 3.62
693 699 1.819928 CGGGAACACATTCACATCCA 58.180 50.000 0.00 0.00 38.24 3.41
700 706 0.179156 CTGCATGCGGGAACACATTC 60.179 55.000 19.33 0.00 0.00 2.67
774 790 8.037758 AGAGAATGATACGTCTTCATCTGTTTT 58.962 33.333 12.72 0.02 32.72 2.43
775 791 7.490725 CAGAGAATGATACGTCTTCATCTGTTT 59.509 37.037 12.72 0.62 32.72 2.83
784 800 3.628032 TCGCTCAGAGAATGATACGTCTT 59.372 43.478 0.00 0.00 38.12 3.01
804 820 6.439599 CGGCCCTGAAATATATCTAGTATCG 58.560 44.000 0.00 0.00 0.00 2.92
806 822 5.900123 AGCGGCCCTGAAATATATCTAGTAT 59.100 40.000 0.00 0.00 0.00 2.12
826 842 2.223923 TGTTGTCCCAAAATTCAAGCGG 60.224 45.455 0.00 0.00 0.00 5.52
848 864 6.183359 CGTTCCGAAGAAGCAAACAATATTTG 60.183 38.462 0.00 0.00 30.91 2.32
868 885 7.371159 AGAAAATCAAGAGGAAAAATCGTTCC 58.629 34.615 0.00 0.00 46.48 3.62
869 886 8.803201 AAGAAAATCAAGAGGAAAAATCGTTC 57.197 30.769 0.00 0.00 0.00 3.95
912 929 3.194116 GGAAAACATGATCCACAGTGCAT 59.806 43.478 0.00 0.00 35.71 3.96
967 984 3.321396 TGGATTGCTCAACTGCATTTGAA 59.679 39.130 18.71 6.54 42.96 2.69
978 995 2.555325 CTGCTTCACTTGGATTGCTCAA 59.445 45.455 0.00 0.00 0.00 3.02
979 996 2.156917 CTGCTTCACTTGGATTGCTCA 58.843 47.619 0.00 0.00 0.00 4.26
980 997 2.430465 TCTGCTTCACTTGGATTGCTC 58.570 47.619 0.00 0.00 0.00 4.26
981 998 2.574006 TCTGCTTCACTTGGATTGCT 57.426 45.000 0.00 0.00 0.00 3.91
984 1001 2.097825 GCCATCTGCTTCACTTGGATT 58.902 47.619 0.00 0.00 36.87 3.01
1003 1020 2.481449 CCTGTACCGGTTCTGATGTAGC 60.481 54.545 15.04 0.00 0.00 3.58
1047 1064 2.633557 AAGGAGGACCCGAGGCCTA 61.634 63.158 4.42 0.00 40.87 3.93
1149 1166 4.510038 AAAGTGCAATGATGACTTGGTC 57.490 40.909 0.00 0.00 31.62 4.02
1176 1193 2.095263 GTCGCTAGGCAGAGATGATCTC 60.095 54.545 14.47 14.47 43.70 2.75
1320 1337 2.501723 GAGATTACAGACCTTGGCCAGA 59.498 50.000 5.11 0.00 0.00 3.86
1336 1353 4.559862 ACGGTTCATGGAAGAAGAGATT 57.440 40.909 0.00 0.00 0.00 2.40
1337 1354 4.559862 AACGGTTCATGGAAGAAGAGAT 57.440 40.909 0.00 0.00 0.00 2.75
1370 1387 3.797039 TCTTAACTGATTCAGGGATGCG 58.203 45.455 17.66 1.97 35.51 4.73
1421 1438 6.712095 TCTGTGAAACTAATGAAATGTCAGCT 59.288 34.615 0.00 0.00 35.57 4.24
1422 1439 6.902341 TCTGTGAAACTAATGAAATGTCAGC 58.098 36.000 0.00 0.00 35.57 4.26
1438 1455 0.321564 CCCACCAGCGATCTGTGAAA 60.322 55.000 1.64 0.00 38.66 2.69
1478 1495 2.896854 CACGCCCGCACTATGCAT 60.897 61.111 3.79 3.79 45.36 3.96
1490 1507 1.019805 GCTTCTTGTAGTCCCACGCC 61.020 60.000 0.00 0.00 0.00 5.68
1493 1510 0.606604 TCGGCTTCTTGTAGTCCCAC 59.393 55.000 0.00 0.00 0.00 4.61
1523 1540 0.770499 TGAAGGTGTTCATGGCTGGA 59.230 50.000 0.00 0.00 37.79 3.86
1595 1612 0.407918 TGGGTGGGACCAAGGAAATC 59.592 55.000 0.00 0.00 41.02 2.17
1602 1619 3.879885 CGTGGTGGGTGGGACCAA 61.880 66.667 0.00 0.00 45.17 3.67
1610 1627 2.526873 AGCCTCTTCGTGGTGGGT 60.527 61.111 0.00 0.00 0.00 4.51
1667 1684 2.097036 ACGGTCGTATGGATCTGTGAA 58.903 47.619 0.00 0.00 0.00 3.18
1670 1687 1.676529 CTCACGGTCGTATGGATCTGT 59.323 52.381 0.00 0.00 0.00 3.41
1726 1743 1.146263 GAAGGGATCGCGGGTGAAT 59.854 57.895 6.13 0.00 0.00 2.57
1730 1747 3.470888 CTGGAAGGGATCGCGGGT 61.471 66.667 6.13 0.00 0.00 5.28
1733 1750 2.587194 CTGCTGGAAGGGATCGCG 60.587 66.667 0.00 0.00 0.00 5.87
1738 1755 3.650950 GGTGGCTGCTGGAAGGGA 61.651 66.667 0.00 0.00 0.00 4.20
1753 1770 1.680522 CTGCATCGGCTAGACAGGGT 61.681 60.000 0.00 0.00 41.91 4.34
1765 1782 2.140065 ACATATCGACCACTGCATCG 57.860 50.000 0.98 0.98 39.72 3.84
1771 1788 4.382040 CCTGAAGTGAACATATCGACCACT 60.382 45.833 0.00 0.00 39.49 4.00
1772 1789 3.865745 CCTGAAGTGAACATATCGACCAC 59.134 47.826 0.00 0.00 0.00 4.16
1788 1809 4.450419 CACTAAGCTCTTGAACACCTGAAG 59.550 45.833 0.00 0.00 0.00 3.02
1789 1810 4.141711 ACACTAAGCTCTTGAACACCTGAA 60.142 41.667 0.00 0.00 0.00 3.02
1791 1812 3.733337 ACACTAAGCTCTTGAACACCTG 58.267 45.455 0.00 0.00 0.00 4.00
1792 1813 4.423625 AACACTAAGCTCTTGAACACCT 57.576 40.909 0.00 0.00 0.00 4.00
1793 1814 4.318831 CGAAACACTAAGCTCTTGAACACC 60.319 45.833 0.00 0.00 0.00 4.16
1794 1815 4.762809 CGAAACACTAAGCTCTTGAACAC 58.237 43.478 0.00 0.00 0.00 3.32
1795 1816 3.247648 GCGAAACACTAAGCTCTTGAACA 59.752 43.478 0.00 0.00 0.00 3.18
1796 1817 3.661936 CGCGAAACACTAAGCTCTTGAAC 60.662 47.826 0.00 0.00 0.00 3.18
1797 1818 2.475111 CGCGAAACACTAAGCTCTTGAA 59.525 45.455 0.00 0.00 0.00 2.69
1798 1819 2.058798 CGCGAAACACTAAGCTCTTGA 58.941 47.619 0.00 0.00 0.00 3.02
1799 1820 1.792949 ACGCGAAACACTAAGCTCTTG 59.207 47.619 15.93 0.00 0.00 3.02
1800 1821 2.150397 ACGCGAAACACTAAGCTCTT 57.850 45.000 15.93 0.00 0.00 2.85
1801 1822 2.150397 AACGCGAAACACTAAGCTCT 57.850 45.000 15.93 0.00 0.00 4.09
1802 1823 2.943843 AAACGCGAAACACTAAGCTC 57.056 45.000 15.93 0.00 0.00 4.09
1803 1824 2.870411 AGAAAACGCGAAACACTAAGCT 59.130 40.909 15.93 0.00 0.00 3.74
1811 1832 1.259544 CGGCACAGAAAACGCGAAAC 61.260 55.000 15.93 0.65 0.00 2.78
1812 1833 1.010574 CGGCACAGAAAACGCGAAA 60.011 52.632 15.93 0.00 0.00 3.46
1816 1837 4.700365 GGCCGGCACAGAAAACGC 62.700 66.667 30.85 1.84 0.00 4.84
1817 1838 4.038080 GGGCCGGCACAGAAAACG 62.038 66.667 30.85 0.00 0.00 3.60
1818 1839 2.275380 ATGGGCCGGCACAGAAAAC 61.275 57.895 37.68 12.36 30.39 2.43
1820 1841 2.676121 CATGGGCCGGCACAGAAA 60.676 61.111 37.68 14.31 30.39 2.52
1834 1855 2.355108 CCACTCCTTACACCCAGACATG 60.355 54.545 0.00 0.00 0.00 3.21
1835 1856 1.909302 CCACTCCTTACACCCAGACAT 59.091 52.381 0.00 0.00 0.00 3.06
1836 1857 1.132977 TCCACTCCTTACACCCAGACA 60.133 52.381 0.00 0.00 0.00 3.41
1837 1858 1.550976 CTCCACTCCTTACACCCAGAC 59.449 57.143 0.00 0.00 0.00 3.51
1838 1859 1.431633 TCTCCACTCCTTACACCCAGA 59.568 52.381 0.00 0.00 0.00 3.86
1839 1860 1.827969 CTCTCCACTCCTTACACCCAG 59.172 57.143 0.00 0.00 0.00 4.45
1840 1861 1.149288 ACTCTCCACTCCTTACACCCA 59.851 52.381 0.00 0.00 0.00 4.51
1841 1862 1.939980 ACTCTCCACTCCTTACACCC 58.060 55.000 0.00 0.00 0.00 4.61
1842 1863 4.279145 TGATACTCTCCACTCCTTACACC 58.721 47.826 0.00 0.00 0.00 4.16
1843 1864 5.594725 TGATGATACTCTCCACTCCTTACAC 59.405 44.000 0.00 0.00 0.00 2.90
1844 1865 5.766590 TGATGATACTCTCCACTCCTTACA 58.233 41.667 0.00 0.00 0.00 2.41
1845 1866 5.242838 CCTGATGATACTCTCCACTCCTTAC 59.757 48.000 0.00 0.00 0.00 2.34
1846 1867 5.103473 ACCTGATGATACTCTCCACTCCTTA 60.103 44.000 0.00 0.00 0.00 2.69
1847 1868 4.222336 CCTGATGATACTCTCCACTCCTT 58.778 47.826 0.00 0.00 0.00 3.36
1848 1869 3.206412 ACCTGATGATACTCTCCACTCCT 59.794 47.826 0.00 0.00 0.00 3.69
1849 1870 3.320541 CACCTGATGATACTCTCCACTCC 59.679 52.174 0.00 0.00 0.00 3.85
1850 1871 3.957497 ACACCTGATGATACTCTCCACTC 59.043 47.826 0.00 0.00 0.00 3.51
1851 1872 3.987745 ACACCTGATGATACTCTCCACT 58.012 45.455 0.00 0.00 0.00 4.00
1852 1873 4.744795 AACACCTGATGATACTCTCCAC 57.255 45.455 0.00 0.00 0.00 4.02
1853 1874 4.532126 ACAAACACCTGATGATACTCTCCA 59.468 41.667 0.00 0.00 0.00 3.86
1854 1875 5.091261 ACAAACACCTGATGATACTCTCC 57.909 43.478 0.00 0.00 0.00 3.71
1855 1876 6.428159 ACAAACAAACACCTGATGATACTCTC 59.572 38.462 0.00 0.00 0.00 3.20
1856 1877 6.299141 ACAAACAAACACCTGATGATACTCT 58.701 36.000 0.00 0.00 0.00 3.24
1857 1878 6.560253 ACAAACAAACACCTGATGATACTC 57.440 37.500 0.00 0.00 0.00 2.59
1858 1879 5.179368 CGACAAACAAACACCTGATGATACT 59.821 40.000 0.00 0.00 0.00 2.12
1859 1880 5.382303 CGACAAACAAACACCTGATGATAC 58.618 41.667 0.00 0.00 0.00 2.24
1860 1881 4.454161 CCGACAAACAAACACCTGATGATA 59.546 41.667 0.00 0.00 0.00 2.15
1861 1882 3.253188 CCGACAAACAAACACCTGATGAT 59.747 43.478 0.00 0.00 0.00 2.45
1862 1883 2.616376 CCGACAAACAAACACCTGATGA 59.384 45.455 0.00 0.00 0.00 2.92
1865 1886 1.740585 CACCGACAAACAAACACCTGA 59.259 47.619 0.00 0.00 0.00 3.86
1868 1889 2.098443 ACATCACCGACAAACAAACACC 59.902 45.455 0.00 0.00 0.00 4.16
1869 1890 3.064820 AGACATCACCGACAAACAAACAC 59.935 43.478 0.00 0.00 0.00 3.32
1872 1893 3.064682 CACAGACATCACCGACAAACAAA 59.935 43.478 0.00 0.00 0.00 2.83
1873 1894 2.611751 CACAGACATCACCGACAAACAA 59.388 45.455 0.00 0.00 0.00 2.83
1879 1900 2.735134 GGTTAACACAGACATCACCGAC 59.265 50.000 8.10 0.00 0.00 4.79
1894 1915 2.742774 AGGTACGACACGTTGGTTAAC 58.257 47.619 1.53 0.00 41.54 2.01
1897 1918 2.353011 CCATAGGTACGACACGTTGGTT 60.353 50.000 1.53 0.00 41.54 3.67
1901 1922 2.557924 TGTTCCATAGGTACGACACGTT 59.442 45.455 1.53 0.00 41.54 3.99
1903 1924 2.925578 TGTTCCATAGGTACGACACG 57.074 50.000 0.00 0.00 0.00 4.49
1904 1925 3.131577 TCCATGTTCCATAGGTACGACAC 59.868 47.826 0.00 0.00 0.00 3.67
1905 1926 3.367321 TCCATGTTCCATAGGTACGACA 58.633 45.455 0.00 0.00 0.00 4.35
1906 1927 4.038763 TGATCCATGTTCCATAGGTACGAC 59.961 45.833 0.00 0.00 0.00 4.34
1907 1928 4.219919 TGATCCATGTTCCATAGGTACGA 58.780 43.478 0.00 0.00 0.00 3.43
1908 1929 4.039245 ACTGATCCATGTTCCATAGGTACG 59.961 45.833 0.00 0.00 0.00 3.67
1909 1930 5.552870 ACTGATCCATGTTCCATAGGTAC 57.447 43.478 0.00 0.00 0.00 3.34
1910 1931 9.560860 AATATACTGATCCATGTTCCATAGGTA 57.439 33.333 0.00 0.00 0.00 3.08
1911 1932 8.454859 AATATACTGATCCATGTTCCATAGGT 57.545 34.615 0.00 0.00 0.00 3.08
1912 1933 9.170734 CAAATATACTGATCCATGTTCCATAGG 57.829 37.037 0.00 0.00 0.00 2.57
1916 1937 9.337396 GTAACAAATATACTGATCCATGTTCCA 57.663 33.333 0.00 0.00 32.56 3.53
1917 1938 9.561069 AGTAACAAATATACTGATCCATGTTCC 57.439 33.333 0.00 0.00 32.50 3.62
1947 1968 4.643463 TCTCTACGCCCTAACATCTCTAG 58.357 47.826 0.00 0.00 0.00 2.43
1952 1973 4.551388 CTGAATCTCTACGCCCTAACATC 58.449 47.826 0.00 0.00 0.00 3.06
1953 1974 3.322254 CCTGAATCTCTACGCCCTAACAT 59.678 47.826 0.00 0.00 0.00 2.71
1955 1977 2.957006 TCCTGAATCTCTACGCCCTAAC 59.043 50.000 0.00 0.00 0.00 2.34
1963 2069 6.655003 TGGAACAACATTTCCTGAATCTCTAC 59.345 38.462 3.66 0.00 44.89 2.59
1970 2076 2.627699 GGCTGGAACAACATTTCCTGAA 59.372 45.455 11.68 0.00 44.89 3.02
1972 2078 1.962807 TGGCTGGAACAACATTTCCTG 59.037 47.619 3.66 4.27 44.89 3.86
2009 2124 1.936547 GACGGAAGCAGATTCATCCAC 59.063 52.381 0.00 0.00 39.91 4.02
2029 2144 6.578545 CCATCACAGTAAAATTCAGAACAACG 59.421 38.462 0.00 0.00 0.00 4.10
2033 2148 7.096065 GCAAACCATCACAGTAAAATTCAGAAC 60.096 37.037 0.00 0.00 0.00 3.01
2081 2201 4.342359 AGAGAATTTTGCCTCTTGCTGAT 58.658 39.130 0.00 0.00 42.00 2.90
2107 2227 0.318120 GTGTCCAGCACCAAAATGGG 59.682 55.000 0.87 0.00 43.37 4.00
2141 2268 3.452264 TCTCACATTGTTCCGATCCTGAT 59.548 43.478 0.00 0.00 0.00 2.90
2153 2280 2.807967 CCACGTCACATTCTCACATTGT 59.192 45.455 0.00 0.00 0.00 2.71
2156 2283 1.442769 GCCACGTCACATTCTCACAT 58.557 50.000 0.00 0.00 0.00 3.21
2161 2288 1.568612 CTTGCGCCACGTCACATTCT 61.569 55.000 4.18 0.00 0.00 2.40
2178 2305 4.070716 CTGATTCACCAGAGCACTTTCTT 58.929 43.478 0.00 0.00 36.29 2.52
2203 2330 0.819259 TCTTGTTGCCCAGTCACAGC 60.819 55.000 0.00 0.00 0.00 4.40
2211 2338 5.045213 TGGACTTATCTTATCTTGTTGCCCA 60.045 40.000 0.00 0.00 0.00 5.36
2212 2339 5.437060 TGGACTTATCTTATCTTGTTGCCC 58.563 41.667 0.00 0.00 0.00 5.36
2267 2394 1.129326 CGACGGTGACTGAACTGAAC 58.871 55.000 0.00 0.00 0.00 3.18
2286 2413 0.615850 AGGAGTAGCAAGAAGGCCAC 59.384 55.000 5.01 0.00 0.00 5.01
2296 2423 3.194968 GTGGTAGCAACTAAGGAGTAGCA 59.805 47.826 0.00 0.00 33.58 3.49
2297 2424 3.430513 GGTGGTAGCAACTAAGGAGTAGC 60.431 52.174 1.82 0.00 33.58 3.58
2298 2425 3.767673 TGGTGGTAGCAACTAAGGAGTAG 59.232 47.826 11.89 0.00 33.58 2.57
2299 2426 3.767673 CTGGTGGTAGCAACTAAGGAGTA 59.232 47.826 11.89 0.00 33.58 2.59
2300 2427 2.567615 CTGGTGGTAGCAACTAAGGAGT 59.432 50.000 11.89 0.00 37.59 3.85
2301 2428 2.567615 ACTGGTGGTAGCAACTAAGGAG 59.432 50.000 11.89 2.07 0.00 3.69
2302 2429 2.616524 ACTGGTGGTAGCAACTAAGGA 58.383 47.619 11.89 0.00 0.00 3.36
2303 2430 4.251268 GTTACTGGTGGTAGCAACTAAGG 58.749 47.826 11.89 1.87 32.86 2.69
2304 2431 4.890088 TGTTACTGGTGGTAGCAACTAAG 58.110 43.478 11.89 3.60 38.38 2.18
2305 2432 4.262721 CCTGTTACTGGTGGTAGCAACTAA 60.263 45.833 11.89 0.00 40.22 2.24
2306 2433 3.259876 CCTGTTACTGGTGGTAGCAACTA 59.740 47.826 11.89 0.00 40.22 2.24
2307 2434 2.038557 CCTGTTACTGGTGGTAGCAACT 59.961 50.000 11.89 0.00 40.22 3.16
2308 2435 2.038033 TCCTGTTACTGGTGGTAGCAAC 59.962 50.000 2.13 2.13 40.22 4.17
2309 2436 2.331166 TCCTGTTACTGGTGGTAGCAA 58.669 47.619 8.11 0.00 40.22 3.91
2329 2478 1.334556 GGGCTACGAAACCAAAACGTT 59.665 47.619 0.00 0.00 40.61 3.99
2362 2513 4.446371 CATTCATCTCTCTACCACAACCC 58.554 47.826 0.00 0.00 0.00 4.11
2402 2553 3.364023 CGATTATCCGTTTATCCAGACGC 59.636 47.826 0.00 0.00 37.91 5.19
2407 2558 4.624015 GGACACGATTATCCGTTTATCCA 58.376 43.478 0.00 0.00 41.29 3.41
2430 2581 1.639298 AAATTCTGACGCGCTGGAGC 61.639 55.000 5.73 0.00 37.78 4.70
2447 2598 8.071368 AGTTTCATTTACTCGCAAAATACGAAA 58.929 29.630 0.00 0.00 39.39 3.46
2488 2640 2.497792 ATTCCATGGCCGCCACTTCA 62.498 55.000 16.16 0.00 35.80 3.02
2489 2641 1.322538 AATTCCATGGCCGCCACTTC 61.323 55.000 16.16 0.00 35.80 3.01
2493 2645 1.423541 ACTATAATTCCATGGCCGCCA 59.576 47.619 16.17 16.17 38.19 5.69
2504 2656 9.921637 TTGGTTGAAATGTTCCAACTATAATTC 57.078 29.630 0.00 0.00 41.57 2.17
2519 2671 5.982516 TCTTTCACGGATTTTGGTTGAAATG 59.017 36.000 0.00 0.00 29.75 2.32
2535 2687 4.503910 TCTCTCTCTCTCTCTCTTTCACG 58.496 47.826 0.00 0.00 0.00 4.35
2537 2689 5.721480 TCTCTCTCTCTCTCTCTCTCTTTCA 59.279 44.000 0.00 0.00 0.00 2.69
2540 2694 4.653341 CCTCTCTCTCTCTCTCTCTCTCTT 59.347 50.000 0.00 0.00 0.00 2.85
2589 2748 8.792633 TCATTTAGTTGTGATTCGGAATTTTCT 58.207 29.630 4.47 3.21 0.00 2.52
2604 2763 8.739972 GGTTTATCAGGTTCATCATTTAGTTGT 58.260 33.333 0.00 0.00 0.00 3.32
2608 2767 7.775093 TGAGGGTTTATCAGGTTCATCATTTAG 59.225 37.037 0.00 0.00 0.00 1.85
2646 2805 6.082031 AGGATTAGCCCTTAAGTTGGTTTTT 58.918 36.000 0.97 0.00 37.37 1.94
2651 2810 3.118371 ACGAGGATTAGCCCTTAAGTTGG 60.118 47.826 0.97 0.00 36.49 3.77
2652 2811 4.138487 ACGAGGATTAGCCCTTAAGTTG 57.862 45.455 0.97 0.00 36.49 3.16
2653 2812 4.224370 TCAACGAGGATTAGCCCTTAAGTT 59.776 41.667 0.97 0.00 36.49 2.66
2654 2813 3.773119 TCAACGAGGATTAGCCCTTAAGT 59.227 43.478 0.97 0.00 36.49 2.24
2655 2814 4.120589 GTCAACGAGGATTAGCCCTTAAG 58.879 47.826 0.00 0.00 36.49 1.85
2656 2815 3.516300 TGTCAACGAGGATTAGCCCTTAA 59.484 43.478 0.00 0.00 36.49 1.85
2657 2816 3.101437 TGTCAACGAGGATTAGCCCTTA 58.899 45.455 0.00 0.00 36.49 2.69
2658 2817 1.906574 TGTCAACGAGGATTAGCCCTT 59.093 47.619 0.00 0.00 36.49 3.95
2659 2818 1.568504 TGTCAACGAGGATTAGCCCT 58.431 50.000 0.00 0.00 39.77 5.19
2660 2819 2.622064 ATGTCAACGAGGATTAGCCC 57.378 50.000 0.00 0.00 37.37 5.19
2661 2820 4.965119 AAAATGTCAACGAGGATTAGCC 57.035 40.909 0.00 0.00 0.00 3.93
2662 2821 9.042008 TCTATAAAAATGTCAACGAGGATTAGC 57.958 33.333 0.00 0.00 0.00 3.09
2665 2824 9.667107 TCTTCTATAAAAATGTCAACGAGGATT 57.333 29.630 0.00 0.00 0.00 3.01
2666 2825 9.667107 TTCTTCTATAAAAATGTCAACGAGGAT 57.333 29.630 0.00 0.00 0.00 3.24
2667 2826 9.496873 TTTCTTCTATAAAAATGTCAACGAGGA 57.503 29.630 0.00 0.00 0.00 3.71
2668 2827 9.543018 GTTTCTTCTATAAAAATGTCAACGAGG 57.457 33.333 0.00 0.00 0.00 4.63
2671 2830 9.543018 GGAGTTTCTTCTATAAAAATGTCAACG 57.457 33.333 0.00 0.00 0.00 4.10
2674 2833 9.567776 TGTGGAGTTTCTTCTATAAAAATGTCA 57.432 29.630 0.00 0.00 0.00 3.58
2677 2836 9.346725 GCTTGTGGAGTTTCTTCTATAAAAATG 57.653 33.333 0.00 0.00 0.00 2.32
2678 2837 9.077885 TGCTTGTGGAGTTTCTTCTATAAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
2679 2838 8.458573 TGCTTGTGGAGTTTCTTCTATAAAAA 57.541 30.769 0.00 0.00 0.00 1.94
2680 2839 8.635765 ATGCTTGTGGAGTTTCTTCTATAAAA 57.364 30.769 0.00 0.00 0.00 1.52
2681 2840 7.882791 TGATGCTTGTGGAGTTTCTTCTATAAA 59.117 33.333 0.00 0.00 0.00 1.40
2682 2841 7.394016 TGATGCTTGTGGAGTTTCTTCTATAA 58.606 34.615 0.00 0.00 0.00 0.98
2683 2842 6.946340 TGATGCTTGTGGAGTTTCTTCTATA 58.054 36.000 0.00 0.00 0.00 1.31
2684 2843 5.809001 TGATGCTTGTGGAGTTTCTTCTAT 58.191 37.500 0.00 0.00 0.00 1.98
2685 2844 5.227569 TGATGCTTGTGGAGTTTCTTCTA 57.772 39.130 0.00 0.00 0.00 2.10
2686 2845 4.090761 TGATGCTTGTGGAGTTTCTTCT 57.909 40.909 0.00 0.00 0.00 2.85
2687 2846 6.094603 ACATATGATGCTTGTGGAGTTTCTTC 59.905 38.462 10.38 0.00 0.00 2.87
2688 2847 5.948162 ACATATGATGCTTGTGGAGTTTCTT 59.052 36.000 10.38 0.00 0.00 2.52
2689 2848 5.503927 ACATATGATGCTTGTGGAGTTTCT 58.496 37.500 10.38 0.00 0.00 2.52
2690 2849 5.220931 GGACATATGATGCTTGTGGAGTTTC 60.221 44.000 10.38 0.00 0.00 2.78
2691 2850 4.641989 GGACATATGATGCTTGTGGAGTTT 59.358 41.667 10.38 0.00 0.00 2.66
2692 2851 4.202441 GGACATATGATGCTTGTGGAGTT 58.798 43.478 10.38 0.00 0.00 3.01
2693 2852 3.742327 CGGACATATGATGCTTGTGGAGT 60.742 47.826 10.38 0.00 0.00 3.85
2694 2853 2.804527 CGGACATATGATGCTTGTGGAG 59.195 50.000 10.38 0.00 0.00 3.86
2695 2854 2.433970 TCGGACATATGATGCTTGTGGA 59.566 45.455 10.38 0.00 0.00 4.02
2696 2855 2.804527 CTCGGACATATGATGCTTGTGG 59.195 50.000 10.38 0.00 0.00 4.17
2697 2856 3.461061 ACTCGGACATATGATGCTTGTG 58.539 45.455 10.38 0.00 0.00 3.33
2698 2857 3.722147 GACTCGGACATATGATGCTTGT 58.278 45.455 10.38 1.02 0.00 3.16
2699 2858 2.728318 CGACTCGGACATATGATGCTTG 59.272 50.000 10.38 0.00 0.00 4.01
2700 2859 3.018598 CGACTCGGACATATGATGCTT 57.981 47.619 10.38 0.00 0.00 3.91
2701 2860 2.713895 CGACTCGGACATATGATGCT 57.286 50.000 10.38 0.00 0.00 3.79
2714 2873 1.003759 CTGAGTACGAATCCCGACTCG 60.004 57.143 0.00 0.00 42.66 4.18
2715 2874 2.286872 TCTGAGTACGAATCCCGACTC 58.713 52.381 0.00 0.00 41.44 3.36
2716 2875 2.414994 TCTGAGTACGAATCCCGACT 57.585 50.000 0.00 0.00 41.76 4.18
2717 2876 2.287668 CCATCTGAGTACGAATCCCGAC 60.288 54.545 0.00 0.00 41.76 4.79
2718 2877 1.954382 CCATCTGAGTACGAATCCCGA 59.046 52.381 0.00 0.00 41.76 5.14
2719 2878 1.000163 CCCATCTGAGTACGAATCCCG 60.000 57.143 0.00 0.00 45.44 5.14
2720 2879 1.270358 GCCCATCTGAGTACGAATCCC 60.270 57.143 0.00 0.00 0.00 3.85
2721 2880 1.689273 AGCCCATCTGAGTACGAATCC 59.311 52.381 0.00 0.00 0.00 3.01
2722 2881 2.546795 CCAGCCCATCTGAGTACGAATC 60.547 54.545 0.00 0.00 45.72 2.52
2723 2882 1.414181 CCAGCCCATCTGAGTACGAAT 59.586 52.381 0.00 0.00 45.72 3.34
2724 2883 0.824109 CCAGCCCATCTGAGTACGAA 59.176 55.000 0.00 0.00 45.72 3.85
2725 2884 1.676678 GCCAGCCCATCTGAGTACGA 61.677 60.000 0.00 0.00 45.72 3.43
2726 2885 1.227380 GCCAGCCCATCTGAGTACG 60.227 63.158 0.00 0.00 45.72 3.67
2727 2886 0.179062 CTGCCAGCCCATCTGAGTAC 60.179 60.000 0.00 0.00 45.72 2.73
2728 2887 1.976132 GCTGCCAGCCCATCTGAGTA 61.976 60.000 5.06 0.00 45.72 2.59
2729 2888 2.996395 CTGCCAGCCCATCTGAGT 59.004 61.111 0.00 0.00 45.72 3.41
2730 2889 2.516460 GCTGCCAGCCCATCTGAG 60.516 66.667 5.06 0.00 45.72 3.35
2731 2890 2.219449 ATTGCTGCCAGCCCATCTGA 62.219 55.000 15.29 0.00 45.72 3.27
2732 2891 1.735376 GATTGCTGCCAGCCCATCTG 61.735 60.000 15.29 0.00 41.51 2.90
2733 2892 1.455217 GATTGCTGCCAGCCCATCT 60.455 57.895 15.29 0.00 41.51 2.90
2734 2893 1.453762 GAGATTGCTGCCAGCCCATC 61.454 60.000 15.29 15.14 41.51 3.51
2735 2894 1.455217 GAGATTGCTGCCAGCCCAT 60.455 57.895 15.29 6.18 41.51 4.00
2736 2895 2.044650 GAGATTGCTGCCAGCCCA 60.045 61.111 15.29 0.45 41.51 5.36
2737 2896 2.044650 TGAGATTGCTGCCAGCCC 60.045 61.111 15.29 3.43 41.51 5.19
2738 2897 2.772691 GCTGAGATTGCTGCCAGCC 61.773 63.158 15.29 0.00 44.39 4.85
2739 2898 2.799371 GCTGAGATTGCTGCCAGC 59.201 61.111 10.45 10.45 44.00 4.85
2740 2899 4.639776 AGCTGAGATTGCTGCCAG 57.360 55.556 0.00 0.00 39.56 4.85
2745 2904 1.077644 CTGGGCAGCTGAGATTGCT 60.078 57.895 20.43 0.00 42.06 3.91
2746 2905 3.510846 CTGGGCAGCTGAGATTGC 58.489 61.111 20.43 0.23 39.56 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.