Multiple sequence alignment - TraesCS7A01G142300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G142300 chr7A 100.000 2858 0 0 1 2858 93261963 93259106 0.000000e+00 5278.0
1 TraesCS7A01G142300 chr7A 97.386 306 8 0 1 306 93270370 93270065 3.260000e-144 521.0
2 TraesCS7A01G142300 chr7A 94.118 306 14 1 1 306 510178008 510177707 2.010000e-126 462.0
3 TraesCS7A01G142300 chr7A 93.548 310 19 1 1 310 510169786 510169478 7.210000e-126 460.0
4 TraesCS7A01G142300 chr7A 91.111 135 12 0 2625 2759 93245837 93245703 1.750000e-42 183.0
5 TraesCS7A01G142300 chr7D 92.739 1446 86 11 536 1976 91700304 91698873 0.000000e+00 2071.0
6 TraesCS7A01G142300 chr7D 92.110 621 32 3 2255 2858 91692942 91692322 0.000000e+00 859.0
7 TraesCS7A01G142300 chr7D 94.019 418 25 0 995 1412 58768420 58768837 4.020000e-178 634.0
8 TraesCS7A01G142300 chr7D 90.099 303 29 1 1 303 308286842 308286541 2.670000e-105 392.0
9 TraesCS7A01G142300 chr7D 89.145 304 32 1 1 304 308278757 308278455 7.470000e-101 377.0
10 TraesCS7A01G142300 chr7D 82.203 236 17 8 1957 2167 91693208 91692973 2.260000e-41 180.0
11 TraesCS7A01G142300 chr7D 80.631 222 23 13 2249 2454 71862740 71862523 1.370000e-33 154.0
12 TraesCS7A01G142300 chr7D 100.000 31 0 0 2625 2655 91671876 91671846 1.110000e-04 58.4
13 TraesCS7A01G142300 chr7D 100.000 30 0 0 467 496 28560522 28560551 3.980000e-04 56.5
14 TraesCS7A01G142300 chr2A 84.005 744 76 29 689 1416 619760221 619760937 0.000000e+00 675.0
15 TraesCS7A01G142300 chr2A 80.374 214 31 6 2255 2458 619761636 619761848 4.930000e-33 152.0
16 TraesCS7A01G142300 chr7B 94.884 430 19 3 983 1412 63934965 63935391 0.000000e+00 669.0
17 TraesCS7A01G142300 chr7B 88.034 117 11 3 2256 2371 14864515 14864401 4.970000e-28 135.0
18 TraesCS7A01G142300 chr6D 93.379 438 28 1 977 1413 116345428 116344991 0.000000e+00 647.0
19 TraesCS7A01G142300 chr4A 93.213 442 27 3 972 1412 23611245 23610806 0.000000e+00 647.0
20 TraesCS7A01G142300 chr4A 88.235 68 6 2 304 370 617565103 617565037 2.360000e-11 80.5
21 TraesCS7A01G142300 chr4D 94.484 417 23 0 995 1411 444177285 444177701 0.000000e+00 643.0
22 TraesCS7A01G142300 chr5D 94.458 415 23 0 998 1412 298123775 298124189 8.630000e-180 640.0
23 TraesCS7A01G142300 chr5B 94.458 415 23 0 998 1412 339100936 339100522 8.630000e-180 640.0
24 TraesCS7A01G142300 chr3B 92.627 434 26 5 1001 1430 479985968 479985537 1.120000e-173 619.0
25 TraesCS7A01G142300 chr1B 90.233 430 40 1 1001 1430 608462890 608462463 6.910000e-156 560.0
26 TraesCS7A01G142300 chr6A 96.078 306 9 1 1 306 199294825 199294523 1.980000e-136 496.0
27 TraesCS7A01G142300 chr5A 91.749 303 24 1 1 303 22459809 22460110 1.220000e-113 420.0
28 TraesCS7A01G142300 chr5A 88.961 308 27 5 1 304 268855779 268855475 9.670000e-100 374.0
29 TraesCS7A01G142300 chr2D 89.769 303 30 1 1 303 318147246 318147547 1.240000e-103 387.0
30 TraesCS7A01G142300 chrUn 78.873 284 36 16 2266 2533 84315504 84315229 1.360000e-38 171.0
31 TraesCS7A01G142300 chrUn 76.705 176 35 5 2273 2445 82596179 82596007 3.030000e-15 93.5
32 TraesCS7A01G142300 chr2B 89.855 69 6 1 304 371 450447038 450446970 1.410000e-13 87.9
33 TraesCS7A01G142300 chr2B 93.333 45 3 0 449 493 317188603 317188647 1.840000e-07 67.6
34 TraesCS7A01G142300 chr2B 94.444 36 1 1 467 502 764141589 764141623 1.000000e-03 54.7
35 TraesCS7A01G142300 chr4B 84.058 69 6 4 439 504 75198573 75198507 8.550000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G142300 chr7A 93259106 93261963 2857 True 5278.0 5278 100.0000 1 2858 1 chr7A.!!$R2 2857
1 TraesCS7A01G142300 chr7D 91698873 91700304 1431 True 2071.0 2071 92.7390 536 1976 1 chr7D.!!$R3 1440
2 TraesCS7A01G142300 chr7D 91692322 91693208 886 True 519.5 859 87.1565 1957 2858 2 chr7D.!!$R6 901
3 TraesCS7A01G142300 chr2A 619760221 619761848 1627 False 413.5 675 82.1895 689 2458 2 chr2A.!!$F1 1769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.110373 CTCGGGCGTTACAGTTTTGC 60.11 55.0 0.0 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2298 0.111253 GGGGCCAATCTCGAATGGAT 59.889 55.0 4.39 0.0 39.12 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 8.541899 AAATCTGTTTTAAAAGGTTAGGGTCA 57.458 30.769 0.00 0.00 0.00 4.02
79 80 8.721133 AATCTGTTTTAAAAGGTTAGGGTCAT 57.279 30.769 0.00 0.00 0.00 3.06
80 81 8.721133 ATCTGTTTTAAAAGGTTAGGGTCATT 57.279 30.769 0.00 0.00 0.00 2.57
81 82 8.541899 TCTGTTTTAAAAGGTTAGGGTCATTT 57.458 30.769 0.00 0.00 0.00 2.32
82 83 8.983789 TCTGTTTTAAAAGGTTAGGGTCATTTT 58.016 29.630 0.00 0.00 34.19 1.82
115 116 9.967451 TCATAAAGTGTTGGGTAATTTATGAGA 57.033 29.630 13.34 0.00 43.03 3.27
121 122 9.975218 AGTGTTGGGTAATTTATGAGAAATAGT 57.025 29.630 0.00 0.00 0.00 2.12
140 141 9.286170 GAAATAGTTAGGGAATATTCTCAACCC 57.714 37.037 17.59 9.36 40.71 4.11
141 142 7.947782 ATAGTTAGGGAATATTCTCAACCCA 57.052 36.000 17.59 10.18 42.62 4.51
142 143 6.253946 AGTTAGGGAATATTCTCAACCCAG 57.746 41.667 17.59 0.00 42.62 4.45
143 144 3.584733 AGGGAATATTCTCAACCCAGC 57.415 47.619 17.59 0.00 42.62 4.85
144 145 2.175715 AGGGAATATTCTCAACCCAGCC 59.824 50.000 17.59 5.89 42.62 4.85
145 146 2.175715 GGGAATATTCTCAACCCAGCCT 59.824 50.000 14.95 0.00 40.20 4.58
146 147 3.394606 GGGAATATTCTCAACCCAGCCTA 59.605 47.826 14.95 0.00 40.20 3.93
147 148 4.390264 GGAATATTCTCAACCCAGCCTAC 58.610 47.826 14.95 0.00 0.00 3.18
148 149 4.141482 GGAATATTCTCAACCCAGCCTACA 60.141 45.833 14.95 0.00 0.00 2.74
149 150 5.456763 GGAATATTCTCAACCCAGCCTACAT 60.457 44.000 14.95 0.00 0.00 2.29
150 151 5.653255 ATATTCTCAACCCAGCCTACATT 57.347 39.130 0.00 0.00 0.00 2.71
151 152 3.806949 TTCTCAACCCAGCCTACATTT 57.193 42.857 0.00 0.00 0.00 2.32
152 153 3.806949 TCTCAACCCAGCCTACATTTT 57.193 42.857 0.00 0.00 0.00 1.82
153 154 4.112634 TCTCAACCCAGCCTACATTTTT 57.887 40.909 0.00 0.00 0.00 1.94
154 155 4.079253 TCTCAACCCAGCCTACATTTTTC 58.921 43.478 0.00 0.00 0.00 2.29
155 156 4.082125 CTCAACCCAGCCTACATTTTTCT 58.918 43.478 0.00 0.00 0.00 2.52
156 157 4.479158 TCAACCCAGCCTACATTTTTCTT 58.521 39.130 0.00 0.00 0.00 2.52
157 158 4.898861 TCAACCCAGCCTACATTTTTCTTT 59.101 37.500 0.00 0.00 0.00 2.52
158 159 5.365314 TCAACCCAGCCTACATTTTTCTTTT 59.635 36.000 0.00 0.00 0.00 2.27
159 160 6.551601 TCAACCCAGCCTACATTTTTCTTTTA 59.448 34.615 0.00 0.00 0.00 1.52
160 161 7.234577 TCAACCCAGCCTACATTTTTCTTTTAT 59.765 33.333 0.00 0.00 0.00 1.40
161 162 7.553504 ACCCAGCCTACATTTTTCTTTTATT 57.446 32.000 0.00 0.00 0.00 1.40
162 163 8.658840 ACCCAGCCTACATTTTTCTTTTATTA 57.341 30.769 0.00 0.00 0.00 0.98
163 164 9.267071 ACCCAGCCTACATTTTTCTTTTATTAT 57.733 29.630 0.00 0.00 0.00 1.28
205 206 7.974243 TGACTTGCATTTGAATATGAATTCG 57.026 32.000 0.04 0.00 43.84 3.34
206 207 7.760437 TGACTTGCATTTGAATATGAATTCGA 58.240 30.769 0.04 0.00 43.84 3.71
207 208 7.911727 TGACTTGCATTTGAATATGAATTCGAG 59.088 33.333 0.04 0.00 43.84 4.04
208 209 7.765307 ACTTGCATTTGAATATGAATTCGAGT 58.235 30.769 0.04 0.00 43.84 4.18
209 210 8.246180 ACTTGCATTTGAATATGAATTCGAGTT 58.754 29.630 0.04 0.00 43.84 3.01
210 211 8.619146 TTGCATTTGAATATGAATTCGAGTTC 57.381 30.769 13.30 13.30 43.84 3.01
211 212 6.906678 TGCATTTGAATATGAATTCGAGTTCG 59.093 34.615 14.93 0.00 43.84 3.95
212 213 6.358030 GCATTTGAATATGAATTCGAGTTCGG 59.642 38.462 14.93 0.00 43.84 4.30
213 214 6.978343 TTTGAATATGAATTCGAGTTCGGT 57.022 33.333 14.93 9.28 43.84 4.69
214 215 6.978343 TTGAATATGAATTCGAGTTCGGTT 57.022 33.333 14.93 9.65 43.84 4.44
215 216 6.978343 TGAATATGAATTCGAGTTCGGTTT 57.022 33.333 14.93 8.39 43.84 3.27
216 217 6.771076 TGAATATGAATTCGAGTTCGGTTTG 58.229 36.000 14.93 0.00 43.84 2.93
217 218 5.734855 ATATGAATTCGAGTTCGGTTTGG 57.265 39.130 14.93 0.00 40.29 3.28
218 219 3.114668 TGAATTCGAGTTCGGTTTGGA 57.885 42.857 14.93 0.00 40.29 3.53
219 220 3.670625 TGAATTCGAGTTCGGTTTGGAT 58.329 40.909 14.93 0.00 40.29 3.41
220 221 3.682858 TGAATTCGAGTTCGGTTTGGATC 59.317 43.478 14.93 0.00 40.29 3.36
221 222 2.823924 TTCGAGTTCGGTTTGGATCA 57.176 45.000 1.26 0.00 40.29 2.92
222 223 2.363788 TCGAGTTCGGTTTGGATCAG 57.636 50.000 1.26 0.00 40.29 2.90
223 224 1.067142 TCGAGTTCGGTTTGGATCAGG 60.067 52.381 1.26 0.00 40.29 3.86
224 225 1.067142 CGAGTTCGGTTTGGATCAGGA 60.067 52.381 0.00 0.00 35.37 3.86
225 226 2.418746 CGAGTTCGGTTTGGATCAGGAT 60.419 50.000 0.00 0.00 35.37 3.24
226 227 2.939103 GAGTTCGGTTTGGATCAGGATG 59.061 50.000 0.00 0.00 37.54 3.51
227 228 6.703043 CGAGTTCGGTTTGGATCAGGATGA 62.703 50.000 0.00 0.00 42.75 2.92
257 258 9.585099 TTACAAAATTAATGATGATCACAAGGC 57.415 29.630 0.00 0.00 0.00 4.35
258 259 7.613585 ACAAAATTAATGATGATCACAAGGCA 58.386 30.769 0.00 0.00 0.00 4.75
259 260 7.546667 ACAAAATTAATGATGATCACAAGGCAC 59.453 33.333 0.00 0.00 0.00 5.01
260 261 5.779529 ATTAATGATGATCACAAGGCACC 57.220 39.130 0.00 0.00 0.00 5.01
261 262 2.812836 ATGATGATCACAAGGCACCA 57.187 45.000 0.00 0.00 0.00 4.17
262 263 2.812836 TGATGATCACAAGGCACCAT 57.187 45.000 0.00 0.00 0.00 3.55
263 264 3.090210 TGATGATCACAAGGCACCATT 57.910 42.857 0.00 0.00 0.00 3.16
264 265 3.018856 TGATGATCACAAGGCACCATTC 58.981 45.455 0.00 0.00 0.00 2.67
265 266 2.583024 TGATCACAAGGCACCATTCA 57.417 45.000 0.00 0.00 0.00 2.57
266 267 3.090210 TGATCACAAGGCACCATTCAT 57.910 42.857 0.00 0.00 0.00 2.57
267 268 2.756207 TGATCACAAGGCACCATTCATG 59.244 45.455 0.00 0.00 0.00 3.07
268 269 2.291209 TCACAAGGCACCATTCATGT 57.709 45.000 0.00 0.00 0.00 3.21
269 270 1.887854 TCACAAGGCACCATTCATGTG 59.112 47.619 0.00 0.00 39.50 3.21
270 271 1.614903 CACAAGGCACCATTCATGTGT 59.385 47.619 0.00 0.00 34.85 3.72
271 272 2.819019 CACAAGGCACCATTCATGTGTA 59.181 45.455 0.00 0.00 34.85 2.90
272 273 3.084039 ACAAGGCACCATTCATGTGTAG 58.916 45.455 0.00 0.00 0.00 2.74
273 274 3.084039 CAAGGCACCATTCATGTGTAGT 58.916 45.455 0.00 0.00 0.00 2.73
274 275 3.439857 AGGCACCATTCATGTGTAGTT 57.560 42.857 0.00 0.00 0.00 2.24
275 276 4.568072 AGGCACCATTCATGTGTAGTTA 57.432 40.909 0.00 0.00 0.00 2.24
276 277 4.261801 AGGCACCATTCATGTGTAGTTAC 58.738 43.478 0.00 0.00 0.00 2.50
277 278 4.019321 AGGCACCATTCATGTGTAGTTACT 60.019 41.667 0.00 0.00 0.00 2.24
278 279 4.094887 GGCACCATTCATGTGTAGTTACTG 59.905 45.833 0.00 0.00 0.00 2.74
279 280 4.695455 GCACCATTCATGTGTAGTTACTGT 59.305 41.667 0.00 0.00 0.00 3.55
280 281 5.872617 GCACCATTCATGTGTAGTTACTGTA 59.127 40.000 0.00 0.00 0.00 2.74
281 282 6.036083 GCACCATTCATGTGTAGTTACTGTAG 59.964 42.308 0.00 0.00 0.00 2.74
282 283 6.036083 CACCATTCATGTGTAGTTACTGTAGC 59.964 42.308 0.00 0.00 0.00 3.58
283 284 6.070767 ACCATTCATGTGTAGTTACTGTAGCT 60.071 38.462 9.18 9.18 0.00 3.32
284 285 6.818644 CCATTCATGTGTAGTTACTGTAGCTT 59.181 38.462 9.49 0.00 0.00 3.74
285 286 7.979537 CCATTCATGTGTAGTTACTGTAGCTTA 59.020 37.037 9.49 0.00 0.00 3.09
286 287 9.366216 CATTCATGTGTAGTTACTGTAGCTTAA 57.634 33.333 9.49 0.00 0.00 1.85
287 288 8.752766 TTCATGTGTAGTTACTGTAGCTTAAC 57.247 34.615 9.49 8.89 0.00 2.01
288 289 8.118976 TCATGTGTAGTTACTGTAGCTTAACT 57.881 34.615 9.49 12.07 40.74 2.24
289 290 9.234827 TCATGTGTAGTTACTGTAGCTTAACTA 57.765 33.333 9.49 10.41 38.97 2.24
297 298 2.116787 GTAGCTTAACTACTCGGGCG 57.883 55.000 0.00 0.00 46.65 6.13
298 299 1.403323 GTAGCTTAACTACTCGGGCGT 59.597 52.381 0.00 0.00 46.65 5.68
299 300 0.893447 AGCTTAACTACTCGGGCGTT 59.107 50.000 0.00 0.00 0.00 4.84
300 301 2.094675 AGCTTAACTACTCGGGCGTTA 58.905 47.619 0.00 0.00 0.00 3.18
301 302 2.159324 AGCTTAACTACTCGGGCGTTAC 60.159 50.000 0.00 0.00 0.00 2.50
302 303 2.415893 GCTTAACTACTCGGGCGTTACA 60.416 50.000 0.00 0.00 0.00 2.41
303 304 3.432782 CTTAACTACTCGGGCGTTACAG 58.567 50.000 0.00 0.00 0.00 2.74
304 305 1.251251 AACTACTCGGGCGTTACAGT 58.749 50.000 0.00 0.00 0.00 3.55
305 306 1.251251 ACTACTCGGGCGTTACAGTT 58.749 50.000 0.00 0.00 0.00 3.16
306 307 1.615392 ACTACTCGGGCGTTACAGTTT 59.385 47.619 0.00 0.00 0.00 2.66
307 308 2.036346 ACTACTCGGGCGTTACAGTTTT 59.964 45.455 0.00 0.00 0.00 2.43
308 309 1.223187 ACTCGGGCGTTACAGTTTTG 58.777 50.000 0.00 0.00 0.00 2.44
309 310 0.110373 CTCGGGCGTTACAGTTTTGC 60.110 55.000 0.00 0.00 0.00 3.68
310 311 1.081708 CGGGCGTTACAGTTTTGCC 60.082 57.895 1.87 1.87 44.98 4.52
311 312 1.081708 GGGCGTTACAGTTTTGCCG 60.082 57.895 4.17 0.00 46.66 5.69
312 313 1.728074 GGCGTTACAGTTTTGCCGC 60.728 57.895 0.00 0.00 38.03 6.53
313 314 2.072654 GCGTTACAGTTTTGCCGCG 61.073 57.895 0.00 0.00 32.33 6.46
314 315 1.439693 CGTTACAGTTTTGCCGCGG 60.440 57.895 24.05 24.05 0.00 6.46
315 316 1.833434 CGTTACAGTTTTGCCGCGGA 61.833 55.000 33.48 11.82 0.00 5.54
316 317 0.308376 GTTACAGTTTTGCCGCGGAA 59.692 50.000 33.48 19.06 0.00 4.30
317 318 1.022735 TTACAGTTTTGCCGCGGAAA 58.977 45.000 33.48 25.41 0.00 3.13
318 319 0.308376 TACAGTTTTGCCGCGGAAAC 59.692 50.000 33.48 29.20 36.31 2.78
319 320 1.064946 CAGTTTTGCCGCGGAAACA 59.935 52.632 31.88 20.75 38.03 2.83
320 321 0.526524 CAGTTTTGCCGCGGAAACAA 60.527 50.000 31.88 23.46 38.03 2.83
321 322 0.387565 AGTTTTGCCGCGGAAACAAT 59.612 45.000 31.88 19.86 38.03 2.71
322 323 0.506506 GTTTTGCCGCGGAAACAATG 59.493 50.000 33.48 0.00 36.15 2.82
323 324 1.218230 TTTTGCCGCGGAAACAATGC 61.218 50.000 33.48 11.52 0.00 3.56
328 329 4.049640 GCGGAAACAATGCGGCCA 62.050 61.111 2.24 0.00 43.91 5.36
329 330 2.179018 CGGAAACAATGCGGCCAG 59.821 61.111 2.24 0.00 39.48 4.85
339 340 4.503314 GCGGCCAGCTCCAAATGC 62.503 66.667 2.24 0.00 44.04 3.56
340 341 3.063704 CGGCCAGCTCCAAATGCA 61.064 61.111 2.24 0.00 0.00 3.96
341 342 2.575461 GGCCAGCTCCAAATGCAC 59.425 61.111 0.00 0.00 0.00 4.57
342 343 2.180017 GCCAGCTCCAAATGCACG 59.820 61.111 0.00 0.00 0.00 5.34
343 344 2.879907 CCAGCTCCAAATGCACGG 59.120 61.111 0.00 0.00 0.00 4.94
344 345 2.703798 CCAGCTCCAAATGCACGGG 61.704 63.158 0.00 0.00 0.00 5.28
345 346 3.064324 AGCTCCAAATGCACGGGC 61.064 61.111 0.34 0.34 41.68 6.13
346 347 3.064324 GCTCCAAATGCACGGGCT 61.064 61.111 12.74 0.00 41.91 5.19
347 348 3.056313 GCTCCAAATGCACGGGCTC 62.056 63.158 12.74 0.00 41.91 4.70
348 349 2.361104 TCCAAATGCACGGGCTCC 60.361 61.111 12.74 0.00 41.91 4.70
360 361 3.267974 GGCTCCGCCTCAGTTTTG 58.732 61.111 0.00 0.00 46.69 2.44
361 362 2.335712 GGCTCCGCCTCAGTTTTGG 61.336 63.158 0.00 0.00 46.69 3.28
362 363 2.335712 GCTCCGCCTCAGTTTTGGG 61.336 63.158 0.00 0.00 0.00 4.12
364 365 2.676471 CCGCCTCAGTTTTGGGGG 60.676 66.667 0.00 0.00 45.84 5.40
385 386 3.391382 GGGGACCGAGGGTGTCAG 61.391 72.222 0.00 0.00 40.86 3.51
386 387 2.283676 GGGACCGAGGGTGTCAGA 60.284 66.667 0.00 0.00 35.25 3.27
387 388 2.352032 GGGACCGAGGGTGTCAGAG 61.352 68.421 0.00 0.00 35.25 3.35
388 389 2.574399 GACCGAGGGTGTCAGAGC 59.426 66.667 0.00 0.00 35.25 4.09
389 390 2.997897 ACCGAGGGTGTCAGAGCC 60.998 66.667 0.00 0.00 43.30 4.70
390 391 3.775654 CCGAGGGTGTCAGAGCCC 61.776 72.222 2.30 2.30 44.14 5.19
391 392 3.775654 CGAGGGTGTCAGAGCCCC 61.776 72.222 6.40 1.76 45.95 5.80
392 393 2.607750 GAGGGTGTCAGAGCCCCA 60.608 66.667 7.03 0.00 45.95 4.96
393 394 2.930562 AGGGTGTCAGAGCCCCAC 60.931 66.667 7.03 0.00 45.95 4.61
394 395 4.394712 GGGTGTCAGAGCCCCACG 62.395 72.222 0.02 0.00 38.99 4.94
395 396 3.626924 GGTGTCAGAGCCCCACGT 61.627 66.667 0.00 0.00 0.00 4.49
396 397 2.357517 GTGTCAGAGCCCCACGTG 60.358 66.667 9.08 9.08 0.00 4.49
397 398 2.523168 TGTCAGAGCCCCACGTGA 60.523 61.111 19.30 0.00 0.00 4.35
398 399 2.048127 GTCAGAGCCCCACGTGAC 60.048 66.667 19.30 6.08 33.06 3.67
399 400 3.680786 TCAGAGCCCCACGTGACG 61.681 66.667 19.30 2.24 0.00 4.35
400 401 4.742201 CAGAGCCCCACGTGACGG 62.742 72.222 19.30 16.83 0.00 4.79
407 408 2.932905 CCACGTGACGGGAAAACG 59.067 61.111 19.30 0.00 42.82 3.60
408 409 2.600475 CCACGTGACGGGAAAACGG 61.600 63.158 19.30 0.00 41.50 4.44
409 410 1.592131 CACGTGACGGGAAAACGGA 60.592 57.895 10.90 0.00 41.50 4.69
410 411 1.592400 ACGTGACGGGAAAACGGAC 60.592 57.895 10.66 0.00 41.50 4.79
411 412 1.592131 CGTGACGGGAAAACGGACA 60.592 57.895 0.00 0.00 38.39 4.02
412 413 1.824272 CGTGACGGGAAAACGGACAC 61.824 60.000 0.00 0.00 39.70 3.67
413 414 1.227615 TGACGGGAAAACGGACACC 60.228 57.895 0.00 0.00 38.39 4.16
414 415 1.070275 GACGGGAAAACGGACACCT 59.930 57.895 0.00 0.00 38.39 4.00
415 416 0.318120 GACGGGAAAACGGACACCTA 59.682 55.000 0.00 0.00 38.39 3.08
416 417 0.319405 ACGGGAAAACGGACACCTAG 59.681 55.000 0.00 0.00 38.39 3.02
417 418 0.604578 CGGGAAAACGGACACCTAGA 59.395 55.000 0.00 0.00 0.00 2.43
418 419 1.670967 CGGGAAAACGGACACCTAGAC 60.671 57.143 0.00 0.00 0.00 2.59
419 420 1.622312 GGGAAAACGGACACCTAGACT 59.378 52.381 0.00 0.00 0.00 3.24
420 421 2.827921 GGGAAAACGGACACCTAGACTA 59.172 50.000 0.00 0.00 0.00 2.59
421 422 3.119209 GGGAAAACGGACACCTAGACTAG 60.119 52.174 2.18 2.18 0.00 2.57
422 423 3.509184 GGAAAACGGACACCTAGACTAGT 59.491 47.826 8.68 0.00 0.00 2.57
423 424 4.380339 GGAAAACGGACACCTAGACTAGTC 60.380 50.000 15.41 15.41 0.00 2.59
424 425 2.416680 ACGGACACCTAGACTAGTCC 57.583 55.000 19.38 8.66 45.46 3.85
426 427 1.023502 GGACACCTAGACTAGTCCGC 58.976 60.000 19.38 0.00 40.89 5.54
427 428 0.656785 GACACCTAGACTAGTCCGCG 59.343 60.000 19.38 8.97 0.00 6.46
428 429 0.747283 ACACCTAGACTAGTCCGCGG 60.747 60.000 22.12 22.12 0.00 6.46
429 430 0.463295 CACCTAGACTAGTCCGCGGA 60.463 60.000 27.28 27.28 0.00 5.54
430 431 0.463474 ACCTAGACTAGTCCGCGGAC 60.463 60.000 43.92 43.92 44.86 4.79
438 439 3.391355 GTCCGCGGACAAATACGG 58.609 61.111 44.88 9.43 46.97 4.02
439 440 2.169146 GTCCGCGGACAAATACGGG 61.169 63.158 44.88 8.87 45.65 5.28
442 443 3.803886 GCGGACAAATACGGGACC 58.196 61.111 0.00 0.00 30.32 4.46
443 444 2.169146 GCGGACAAATACGGGACCG 61.169 63.158 9.56 9.56 46.03 4.79
444 445 2.169146 CGGACAAATACGGGACCGC 61.169 63.158 11.21 0.00 44.19 5.68
445 446 1.219935 GGACAAATACGGGACCGCT 59.780 57.895 11.21 0.96 44.19 5.52
446 447 0.808847 GGACAAATACGGGACCGCTC 60.809 60.000 11.21 0.00 44.19 5.03
447 448 1.143969 GACAAATACGGGACCGCTCG 61.144 60.000 11.21 0.00 45.58 5.03
448 449 1.881252 CAAATACGGGACCGCTCGG 60.881 63.158 11.21 6.79 43.99 4.63
469 470 4.115199 GGATGGGCGCAGGAGGTT 62.115 66.667 10.83 0.00 0.00 3.50
470 471 2.044946 GATGGGCGCAGGAGGTTT 60.045 61.111 10.83 0.00 0.00 3.27
471 472 2.361610 ATGGGCGCAGGAGGTTTG 60.362 61.111 10.83 0.00 0.00 2.93
472 473 2.819984 GATGGGCGCAGGAGGTTTGA 62.820 60.000 10.83 0.00 0.00 2.69
473 474 2.747855 GGGCGCAGGAGGTTTGAG 60.748 66.667 10.83 0.00 0.00 3.02
474 475 2.747855 GGCGCAGGAGGTTTGAGG 60.748 66.667 10.83 0.00 0.00 3.86
475 476 2.747855 GCGCAGGAGGTTTGAGGG 60.748 66.667 0.30 0.00 0.00 4.30
476 477 2.750350 CGCAGGAGGTTTGAGGGT 59.250 61.111 0.00 0.00 0.00 4.34
477 478 1.376037 CGCAGGAGGTTTGAGGGTC 60.376 63.158 0.00 0.00 0.00 4.46
478 479 1.002011 GCAGGAGGTTTGAGGGTCC 60.002 63.158 0.00 0.00 0.00 4.46
479 480 1.296715 CAGGAGGTTTGAGGGTCCG 59.703 63.158 0.00 0.00 33.99 4.79
480 481 2.046217 GGAGGTTTGAGGGTCCGC 60.046 66.667 0.00 0.00 0.00 5.54
481 482 2.434359 GAGGTTTGAGGGTCCGCG 60.434 66.667 0.00 0.00 0.00 6.46
482 483 3.236003 GAGGTTTGAGGGTCCGCGT 62.236 63.158 4.92 0.00 0.00 6.01
483 484 2.281276 GGTTTGAGGGTCCGCGTT 60.281 61.111 4.92 0.00 0.00 4.84
484 485 2.613506 GGTTTGAGGGTCCGCGTTG 61.614 63.158 4.92 0.00 0.00 4.10
485 486 2.281208 TTTGAGGGTCCGCGTTGG 60.281 61.111 4.92 0.00 40.09 3.77
493 494 3.390521 TCCGCGTTGGAGATGCCT 61.391 61.111 4.92 0.00 43.74 4.75
494 495 2.055633 TCCGCGTTGGAGATGCCTA 61.056 57.895 4.92 0.00 43.74 3.93
495 496 1.153449 CCGCGTTGGAGATGCCTAA 60.153 57.895 4.92 0.00 42.00 2.69
496 497 1.154205 CCGCGTTGGAGATGCCTAAG 61.154 60.000 4.92 0.00 42.00 2.18
497 498 0.179111 CGCGTTGGAGATGCCTAAGA 60.179 55.000 0.00 0.00 36.93 2.10
498 499 1.539065 CGCGTTGGAGATGCCTAAGAT 60.539 52.381 0.00 0.00 36.93 2.40
499 500 2.565841 GCGTTGGAGATGCCTAAGATT 58.434 47.619 0.00 0.00 37.63 2.40
500 501 3.728845 GCGTTGGAGATGCCTAAGATTA 58.271 45.455 0.00 0.00 37.63 1.75
501 502 4.127171 GCGTTGGAGATGCCTAAGATTAA 58.873 43.478 0.00 0.00 37.63 1.40
502 503 4.574828 GCGTTGGAGATGCCTAAGATTAAA 59.425 41.667 0.00 0.00 37.63 1.52
503 504 5.239525 GCGTTGGAGATGCCTAAGATTAAAT 59.760 40.000 0.00 0.00 37.63 1.40
504 505 6.662616 CGTTGGAGATGCCTAAGATTAAATG 58.337 40.000 0.00 0.00 37.63 2.32
505 506 6.442112 GTTGGAGATGCCTAAGATTAAATGC 58.558 40.000 0.00 0.00 37.63 3.56
506 507 5.945310 TGGAGATGCCTAAGATTAAATGCT 58.055 37.500 0.00 0.00 37.63 3.79
507 508 7.078249 TGGAGATGCCTAAGATTAAATGCTA 57.922 36.000 0.00 0.00 37.63 3.49
508 509 7.517320 TGGAGATGCCTAAGATTAAATGCTAA 58.483 34.615 0.00 0.00 37.63 3.09
509 510 7.998383 TGGAGATGCCTAAGATTAAATGCTAAA 59.002 33.333 0.00 0.00 37.63 1.85
510 511 8.850156 GGAGATGCCTAAGATTAAATGCTAAAA 58.150 33.333 0.00 0.00 0.00 1.52
513 514 9.801873 GATGCCTAAGATTAAATGCTAAAAACA 57.198 29.630 0.00 0.00 0.00 2.83
524 525 7.976135 AAATGCTAAAAACAATAATGCACCA 57.024 28.000 0.00 0.00 0.00 4.17
525 526 7.976135 AATGCTAAAAACAATAATGCACCAA 57.024 28.000 0.00 0.00 0.00 3.67
526 527 6.777526 TGCTAAAAACAATAATGCACCAAC 57.222 33.333 0.00 0.00 0.00 3.77
527 528 6.283694 TGCTAAAAACAATAATGCACCAACA 58.716 32.000 0.00 0.00 0.00 3.33
528 529 6.763135 TGCTAAAAACAATAATGCACCAACAA 59.237 30.769 0.00 0.00 0.00 2.83
529 530 7.443575 TGCTAAAAACAATAATGCACCAACAAT 59.556 29.630 0.00 0.00 0.00 2.71
530 531 7.956943 GCTAAAAACAATAATGCACCAACAATC 59.043 33.333 0.00 0.00 0.00 2.67
531 532 7.798596 AAAAACAATAATGCACCAACAATCA 57.201 28.000 0.00 0.00 0.00 2.57
532 533 7.982761 AAAACAATAATGCACCAACAATCAT 57.017 28.000 0.00 0.00 0.00 2.45
533 534 7.982761 AAACAATAATGCACCAACAATCATT 57.017 28.000 0.00 0.00 34.08 2.57
534 535 9.499479 AAAACAATAATGCACCAACAATCATTA 57.501 25.926 0.00 0.00 36.30 1.90
548 549 6.630444 ACAATCATTAGCACTCCATTGATC 57.370 37.500 0.00 0.00 0.00 2.92
551 552 7.287005 ACAATCATTAGCACTCCATTGATCAAT 59.713 33.333 15.36 15.36 0.00 2.57
592 597 5.095691 ACACAAGCGATTTTCAGTAAGTG 57.904 39.130 0.00 0.00 0.00 3.16
605 610 6.539649 TTCAGTAAGTGGTTTTCTTCATCG 57.460 37.500 0.00 0.00 0.00 3.84
650 655 4.151258 ACATGAGTGAAATTCAGTTGCG 57.849 40.909 4.66 0.00 35.47 4.85
670 675 2.674852 CGAATCAGCAACATACAGTGCT 59.325 45.455 0.00 0.00 35.79 4.40
673 678 3.251479 TCAGCAACATACAGTGCTAGG 57.749 47.619 0.00 0.00 34.37 3.02
694 699 3.378427 GGGAAGCCAAAATGCTAGTACTG 59.622 47.826 5.39 0.00 41.80 2.74
728 734 3.302344 GTGGCCAACCCGCACAAT 61.302 61.111 7.24 0.00 43.83 2.71
744 750 1.815421 AATCGCATCTGCACCGTCC 60.815 57.895 2.72 0.00 42.21 4.79
745 751 2.520465 AATCGCATCTGCACCGTCCA 62.520 55.000 2.72 0.00 42.21 4.02
773 785 0.608130 TGATCCAACGTCTCACCCAG 59.392 55.000 0.00 0.00 0.00 4.45
796 809 3.136123 CGCGACCCTCCCTTCGTA 61.136 66.667 0.00 0.00 37.56 3.43
836 849 2.043227 ACCCAAAAATTTCCGCTCCAA 58.957 42.857 0.00 0.00 0.00 3.53
897 911 0.533951 CTACTTAAACTCCCCGCCGT 59.466 55.000 0.00 0.00 0.00 5.68
963 977 1.224592 CCACCCTCCCAAGAATCCG 59.775 63.158 0.00 0.00 0.00 4.18
1454 1471 2.687805 GCCGCCGGTTTTCCTTCTC 61.688 63.158 4.45 0.00 37.95 2.87
1461 1478 1.529865 CGGTTTTCCTTCTCGGTTGAC 59.470 52.381 0.00 0.00 37.95 3.18
1484 1501 0.678048 GCCGAGGGATTTGTTCTGCT 60.678 55.000 0.00 0.00 0.00 4.24
1524 1541 4.171005 TCGTGCTTCGAGTTGTTATTAGG 58.829 43.478 0.92 0.00 44.01 2.69
1533 1550 7.605410 TCGAGTTGTTATTAGGATTTGTTCC 57.395 36.000 0.00 0.00 45.85 3.62
1546 1575 1.410004 TTGTTCCGTCCTGTCAGTCT 58.590 50.000 0.00 0.00 0.00 3.24
1547 1576 0.673985 TGTTCCGTCCTGTCAGTCTG 59.326 55.000 0.00 0.00 0.00 3.51
1563 1592 3.618594 CAGTCTGGTGATGTTGATTACCG 59.381 47.826 0.00 0.00 40.46 4.02
1598 1633 4.682320 GCAATGGAGGTGATGCAATTCATT 60.682 41.667 0.00 0.00 38.63 2.57
1607 1642 8.188531 AGGTGATGCAATTCATTTTAATTTCG 57.811 30.769 0.00 0.00 35.05 3.46
1615 1650 8.162245 GCAATTCATTTTAATTTCGGAGTTCAC 58.838 33.333 0.00 0.00 0.00 3.18
1729 1769 1.068748 CGTGCTTGCTGCTTTCAGATT 60.069 47.619 0.00 0.00 42.95 2.40
1748 1788 3.004734 GCTCTTGCGCGTCAGACAC 62.005 63.158 8.43 0.00 0.00 3.67
1750 1790 0.109735 CTCTTGCGCGTCAGACACTA 60.110 55.000 8.43 0.00 0.00 2.74
1818 1859 5.414789 TCTTTTCAGTACCATCCATTCGA 57.585 39.130 0.00 0.00 0.00 3.71
1829 1870 1.904287 TCCATTCGACCAAACAAGGG 58.096 50.000 0.00 0.00 0.00 3.95
1859 1900 4.649218 AGGTGTTCCATTACAAGCAAAACT 59.351 37.500 0.00 0.00 35.89 2.66
1883 1924 8.340443 ACTAAACAAAATTCGACCTGAACTTAC 58.660 33.333 0.00 0.00 40.00 2.34
1911 1952 7.833682 TCAAGGTCATATTCCATATTGTTGTGT 59.166 33.333 0.00 0.00 0.00 3.72
1912 1953 7.572523 AGGTCATATTCCATATTGTTGTGTG 57.427 36.000 0.00 0.00 0.00 3.82
1914 1955 7.067372 AGGTCATATTCCATATTGTTGTGTGTG 59.933 37.037 0.00 0.00 0.00 3.82
1917 1958 8.242739 TCATATTCCATATTGTTGTGTGTGTTG 58.757 33.333 0.00 0.00 0.00 3.33
1922 1963 5.629020 CCATATTGTTGTGTGTGTTGCTTAC 59.371 40.000 0.00 0.00 0.00 2.34
1943 1984 2.679837 CGAGGATTCATTGACAGGGTTG 59.320 50.000 0.00 0.00 0.00 3.77
1956 1997 6.095432 TGACAGGGTTGATAATTTGGTTTG 57.905 37.500 0.00 0.00 0.00 2.93
1962 2003 6.033966 GGGTTGATAATTTGGTTTGATCGAC 58.966 40.000 0.00 0.00 32.37 4.20
2032 2087 5.942826 TGGCAAAGTTTGAAAAGGTTGAAAT 59.057 32.000 19.82 0.00 0.00 2.17
2036 2091 5.004922 AGTTTGAAAAGGTTGAAATGCGA 57.995 34.783 0.00 0.00 0.00 5.10
2043 2103 5.551760 AAAGGTTGAAATGCGATGAGTAG 57.448 39.130 0.00 0.00 0.00 2.57
2047 2107 4.184629 GTTGAAATGCGATGAGTAGGAGT 58.815 43.478 0.00 0.00 0.00 3.85
2067 2127 1.015109 CACTCATCACTGCAGATGCC 58.985 55.000 23.35 0.00 43.94 4.40
2090 2168 2.381911 GGTGGCAATGACATGGATTCT 58.618 47.619 0.00 0.00 0.00 2.40
2091 2169 2.100252 GGTGGCAATGACATGGATTCTG 59.900 50.000 0.00 0.00 0.00 3.02
2104 2182 2.679082 GGATTCTGTCCTAGCCCACTA 58.321 52.381 0.00 0.00 44.16 2.74
2158 2239 3.893720 CAAGGTTGCTGTTCACAATCTC 58.106 45.455 0.00 0.00 37.49 2.75
2160 2241 1.197721 GGTTGCTGTTCACAATCTCGG 59.802 52.381 0.00 0.00 0.00 4.63
2167 2248 2.631062 TGTTCACAATCTCGGTGGTACT 59.369 45.455 0.00 0.00 36.90 2.73
2168 2249 2.993899 GTTCACAATCTCGGTGGTACTG 59.006 50.000 0.00 0.00 36.90 2.74
2169 2250 2.244695 TCACAATCTCGGTGGTACTGT 58.755 47.619 0.00 0.00 36.90 3.55
2171 2252 4.021229 TCACAATCTCGGTGGTACTGTAT 58.979 43.478 0.00 0.00 36.90 2.29
2172 2253 4.097437 TCACAATCTCGGTGGTACTGTATC 59.903 45.833 0.00 0.00 36.90 2.24
2173 2254 4.098044 CACAATCTCGGTGGTACTGTATCT 59.902 45.833 0.00 0.00 32.65 1.98
2174 2255 5.298527 CACAATCTCGGTGGTACTGTATCTA 59.701 44.000 0.00 0.00 32.65 1.98
2175 2256 5.298777 ACAATCTCGGTGGTACTGTATCTAC 59.701 44.000 0.00 0.00 0.00 2.59
2176 2257 4.492494 TCTCGGTGGTACTGTATCTACA 57.508 45.455 0.00 0.00 34.56 2.74
2193 2274 8.414003 TGTATCTACAGAACATCCATTACTGTC 58.586 37.037 0.00 0.00 41.17 3.51
2194 2275 7.667575 ATCTACAGAACATCCATTACTGTCT 57.332 36.000 0.00 0.00 41.17 3.41
2195 2276 7.482169 TCTACAGAACATCCATTACTGTCTT 57.518 36.000 0.00 0.00 41.17 3.01
2196 2277 7.323420 TCTACAGAACATCCATTACTGTCTTG 58.677 38.462 0.00 0.00 41.17 3.02
2197 2278 5.248640 ACAGAACATCCATTACTGTCTTGG 58.751 41.667 0.00 3.23 37.24 3.61
2203 2284 4.271696 TCCATTACTGTCTTGGAGTGTG 57.728 45.455 7.36 0.00 34.65 3.82
2204 2285 3.901222 TCCATTACTGTCTTGGAGTGTGA 59.099 43.478 7.36 0.00 34.65 3.58
2205 2286 4.532126 TCCATTACTGTCTTGGAGTGTGAT 59.468 41.667 7.36 0.00 34.65 3.06
2206 2287 4.872691 CCATTACTGTCTTGGAGTGTGATC 59.127 45.833 3.49 0.00 31.94 2.92
2207 2288 5.337894 CCATTACTGTCTTGGAGTGTGATCT 60.338 44.000 3.49 0.00 31.94 2.75
2208 2289 5.808366 TTACTGTCTTGGAGTGTGATCTT 57.192 39.130 0.00 0.00 0.00 2.40
2209 2290 4.696479 ACTGTCTTGGAGTGTGATCTTT 57.304 40.909 0.00 0.00 0.00 2.52
2210 2291 5.041191 ACTGTCTTGGAGTGTGATCTTTT 57.959 39.130 0.00 0.00 0.00 2.27
2211 2292 5.059833 ACTGTCTTGGAGTGTGATCTTTTC 58.940 41.667 0.00 0.00 0.00 2.29
2212 2293 5.034852 TGTCTTGGAGTGTGATCTTTTCA 57.965 39.130 0.00 0.00 0.00 2.69
2213 2294 5.059161 TGTCTTGGAGTGTGATCTTTTCAG 58.941 41.667 0.00 0.00 34.17 3.02
2214 2295 5.163311 TGTCTTGGAGTGTGATCTTTTCAGA 60.163 40.000 0.00 0.00 34.17 3.27
2215 2296 5.760253 GTCTTGGAGTGTGATCTTTTCAGAA 59.240 40.000 0.00 0.00 34.17 3.02
2216 2297 5.760253 TCTTGGAGTGTGATCTTTTCAGAAC 59.240 40.000 0.00 0.00 34.17 3.01
2217 2298 5.034852 TGGAGTGTGATCTTTTCAGAACA 57.965 39.130 0.00 0.00 34.17 3.18
2218 2299 5.624159 TGGAGTGTGATCTTTTCAGAACAT 58.376 37.500 0.00 0.00 34.57 2.71
2219 2300 5.702670 TGGAGTGTGATCTTTTCAGAACATC 59.297 40.000 0.00 0.00 34.57 3.06
2220 2301 5.123027 GGAGTGTGATCTTTTCAGAACATCC 59.877 44.000 0.00 0.00 34.57 3.51
2221 2302 5.624159 AGTGTGATCTTTTCAGAACATCCA 58.376 37.500 0.00 0.00 34.57 3.41
2222 2303 6.243900 AGTGTGATCTTTTCAGAACATCCAT 58.756 36.000 0.00 0.00 34.57 3.41
2223 2304 6.718454 AGTGTGATCTTTTCAGAACATCCATT 59.282 34.615 0.00 0.00 34.57 3.16
2224 2305 7.025963 GTGTGATCTTTTCAGAACATCCATTC 58.974 38.462 0.00 0.00 34.57 2.67
2225 2306 6.128200 TGTGATCTTTTCAGAACATCCATTCG 60.128 38.462 0.00 0.00 34.57 3.34
2226 2307 6.092670 GTGATCTTTTCAGAACATCCATTCGA 59.907 38.462 0.00 0.00 34.57 3.71
2227 2308 6.314648 TGATCTTTTCAGAACATCCATTCGAG 59.685 38.462 0.00 0.00 33.57 4.04
2228 2309 5.793817 TCTTTTCAGAACATCCATTCGAGA 58.206 37.500 0.00 0.00 33.57 4.04
2229 2310 6.409704 TCTTTTCAGAACATCCATTCGAGAT 58.590 36.000 0.00 0.00 33.57 2.75
2230 2311 6.881065 TCTTTTCAGAACATCCATTCGAGATT 59.119 34.615 0.00 0.00 33.57 2.40
2231 2312 6.426980 TTTCAGAACATCCATTCGAGATTG 57.573 37.500 0.00 0.00 33.57 2.67
2232 2313 4.445453 TCAGAACATCCATTCGAGATTGG 58.555 43.478 7.50 7.50 33.57 3.16
2233 2314 3.003068 CAGAACATCCATTCGAGATTGGC 59.997 47.826 8.67 0.00 33.17 4.52
2234 2315 1.972872 ACATCCATTCGAGATTGGCC 58.027 50.000 0.00 0.00 33.17 5.36
2235 2316 1.242076 CATCCATTCGAGATTGGCCC 58.758 55.000 0.00 0.00 33.17 5.80
2236 2317 0.111253 ATCCATTCGAGATTGGCCCC 59.889 55.000 0.00 0.00 33.17 5.80
2237 2318 1.227102 CCATTCGAGATTGGCCCCA 59.773 57.895 0.00 0.00 0.00 4.96
2238 2319 1.103398 CCATTCGAGATTGGCCCCAC 61.103 60.000 0.00 0.00 0.00 4.61
2239 2320 0.394216 CATTCGAGATTGGCCCCACA 60.394 55.000 0.00 0.00 0.00 4.17
2240 2321 0.552848 ATTCGAGATTGGCCCCACAT 59.447 50.000 0.00 0.00 0.00 3.21
2241 2322 0.331278 TTCGAGATTGGCCCCACATT 59.669 50.000 0.00 0.00 0.00 2.71
2242 2323 0.331278 TCGAGATTGGCCCCACATTT 59.669 50.000 0.00 0.00 0.00 2.32
2243 2324 0.740737 CGAGATTGGCCCCACATTTC 59.259 55.000 0.00 0.00 0.00 2.17
2244 2325 1.851304 GAGATTGGCCCCACATTTCA 58.149 50.000 0.00 0.00 0.00 2.69
2245 2326 1.753073 GAGATTGGCCCCACATTTCAG 59.247 52.381 0.00 0.00 0.00 3.02
2246 2327 0.176449 GATTGGCCCCACATTTCAGC 59.824 55.000 0.00 0.00 0.00 4.26
2247 2328 1.266867 ATTGGCCCCACATTTCAGCC 61.267 55.000 0.00 0.00 44.13 4.85
2248 2329 3.076916 GGCCCCACATTTCAGCCC 61.077 66.667 0.00 0.00 37.66 5.19
2249 2330 2.037847 GCCCCACATTTCAGCCCT 59.962 61.111 0.00 0.00 0.00 5.19
2250 2331 2.353610 GCCCCACATTTCAGCCCTG 61.354 63.158 0.00 0.00 0.00 4.45
2386 2467 7.479980 TGAACCAAACAAACTCATGTAGAAAG 58.520 34.615 0.00 0.00 32.02 2.62
2435 2532 0.610174 TCTCGATGCCTGAACAGCTT 59.390 50.000 0.00 0.00 0.00 3.74
2446 2543 3.503363 CCTGAACAGCTTGAGCATAACAA 59.497 43.478 5.70 0.00 45.16 2.83
2449 2546 5.900425 TGAACAGCTTGAGCATAACAAAAA 58.100 33.333 5.70 0.00 45.16 1.94
2558 2655 3.008813 ACCATGCCATACTCATCCAGATC 59.991 47.826 0.00 0.00 0.00 2.75
2649 2747 0.519077 GCAAGTAGTTGAGCAGGTGC 59.481 55.000 14.64 0.00 35.46 5.01
2675 2773 4.824289 ACATGATGGAGTTTGCCAAATTC 58.176 39.130 0.00 4.24 42.16 2.17
2730 2828 4.702196 ACCCCTATCTGTACTACCCAAAA 58.298 43.478 0.00 0.00 0.00 2.44
2746 2844 8.174757 ACTACCCAAAATTACCTTTATTGTCCT 58.825 33.333 0.00 0.00 0.00 3.85
2770 2868 2.185310 ATCTGGCTGACAACCGGTCC 62.185 60.000 8.04 3.69 46.38 4.46
2785 2883 3.141488 TCCTCGCGGCTTCTCCTC 61.141 66.667 6.13 0.00 0.00 3.71
2831 2929 1.802337 TAGTGCAGGTCGCTCACGTT 61.802 55.000 0.00 0.00 43.06 3.99
2834 2932 2.375766 GCAGGTCGCTCACGTTCAG 61.376 63.158 0.00 0.00 41.18 3.02
2852 2950 1.154908 GCGCACAACGTGTAAGTCG 60.155 57.895 0.30 0.00 46.11 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.643735 TGACCCTAACCTTTTAAAACAGATTTA 57.356 29.630 0.00 0.00 32.27 1.40
53 54 8.541899 TGACCCTAACCTTTTAAAACAGATTT 57.458 30.769 0.00 0.00 34.92 2.17
54 55 8.721133 ATGACCCTAACCTTTTAAAACAGATT 57.279 30.769 0.00 0.00 0.00 2.40
55 56 8.721133 AATGACCCTAACCTTTTAAAACAGAT 57.279 30.769 0.00 0.00 0.00 2.90
56 57 8.541899 AAATGACCCTAACCTTTTAAAACAGA 57.458 30.769 0.00 0.00 0.00 3.41
89 90 9.967451 TCTCATAAATTACCCAACACTTTATGA 57.033 29.630 12.73 12.73 42.25 2.15
95 96 9.975218 ACTATTTCTCATAAATTACCCAACACT 57.025 29.630 0.00 0.00 0.00 3.55
114 115 9.286170 GGGTTGAGAATATTCCCTAACTATTTC 57.714 37.037 11.92 0.09 35.63 2.17
115 116 8.787818 TGGGTTGAGAATATTCCCTAACTATTT 58.212 33.333 11.92 0.00 38.95 1.40
116 117 8.344939 TGGGTTGAGAATATTCCCTAACTATT 57.655 34.615 11.92 0.00 38.95 1.73
117 118 7.474936 GCTGGGTTGAGAATATTCCCTAACTAT 60.475 40.741 11.92 0.00 38.95 2.12
118 119 6.183361 GCTGGGTTGAGAATATTCCCTAACTA 60.183 42.308 11.92 0.00 38.95 2.24
119 120 5.398012 GCTGGGTTGAGAATATTCCCTAACT 60.398 44.000 11.92 0.00 38.95 2.24
120 121 4.822350 GCTGGGTTGAGAATATTCCCTAAC 59.178 45.833 11.92 13.29 38.95 2.34
121 122 4.141251 GGCTGGGTTGAGAATATTCCCTAA 60.141 45.833 11.92 2.62 38.95 2.69
122 123 3.394606 GGCTGGGTTGAGAATATTCCCTA 59.605 47.826 11.92 3.46 38.95 3.53
123 124 2.175715 GGCTGGGTTGAGAATATTCCCT 59.824 50.000 11.92 0.00 38.95 4.20
124 125 2.175715 AGGCTGGGTTGAGAATATTCCC 59.824 50.000 11.92 7.00 38.68 3.97
125 126 3.584733 AGGCTGGGTTGAGAATATTCC 57.415 47.619 11.92 4.63 0.00 3.01
126 127 5.036117 TGTAGGCTGGGTTGAGAATATTC 57.964 43.478 7.41 7.41 0.00 1.75
127 128 5.653255 ATGTAGGCTGGGTTGAGAATATT 57.347 39.130 0.00 0.00 0.00 1.28
128 129 5.653255 AATGTAGGCTGGGTTGAGAATAT 57.347 39.130 0.00 0.00 0.00 1.28
129 130 5.450818 AAATGTAGGCTGGGTTGAGAATA 57.549 39.130 0.00 0.00 0.00 1.75
130 131 4.322057 AAATGTAGGCTGGGTTGAGAAT 57.678 40.909 0.00 0.00 0.00 2.40
131 132 3.806949 AAATGTAGGCTGGGTTGAGAA 57.193 42.857 0.00 0.00 0.00 2.87
132 133 3.806949 AAAATGTAGGCTGGGTTGAGA 57.193 42.857 0.00 0.00 0.00 3.27
133 134 4.082125 AGAAAAATGTAGGCTGGGTTGAG 58.918 43.478 0.00 0.00 0.00 3.02
134 135 4.112634 AGAAAAATGTAGGCTGGGTTGA 57.887 40.909 0.00 0.00 0.00 3.18
135 136 4.871933 AAGAAAAATGTAGGCTGGGTTG 57.128 40.909 0.00 0.00 0.00 3.77
136 137 5.887214 AAAAGAAAAATGTAGGCTGGGTT 57.113 34.783 0.00 0.00 0.00 4.11
137 138 7.553504 AATAAAAGAAAAATGTAGGCTGGGT 57.446 32.000 0.00 0.00 0.00 4.51
179 180 8.862074 CGAATTCATATTCAAATGCAAGTCAAA 58.138 29.630 6.22 0.00 40.17 2.69
180 181 8.242739 TCGAATTCATATTCAAATGCAAGTCAA 58.757 29.630 6.22 0.00 40.17 3.18
181 182 7.760437 TCGAATTCATATTCAAATGCAAGTCA 58.240 30.769 6.22 0.00 40.17 3.41
182 183 7.912250 ACTCGAATTCATATTCAAATGCAAGTC 59.088 33.333 6.22 0.00 40.17 3.01
183 184 7.765307 ACTCGAATTCATATTCAAATGCAAGT 58.235 30.769 6.22 0.00 40.17 3.16
184 185 8.624701 AACTCGAATTCATATTCAAATGCAAG 57.375 30.769 6.22 0.00 40.17 4.01
185 186 7.429051 CGAACTCGAATTCATATTCAAATGCAA 59.571 33.333 7.46 0.00 40.17 4.08
186 187 6.906678 CGAACTCGAATTCATATTCAAATGCA 59.093 34.615 7.46 0.00 40.17 3.96
187 188 6.358030 CCGAACTCGAATTCATATTCAAATGC 59.642 38.462 7.46 0.00 40.17 3.56
188 189 7.409697 ACCGAACTCGAATTCATATTCAAATG 58.590 34.615 7.46 0.00 40.17 2.32
189 190 7.553881 ACCGAACTCGAATTCATATTCAAAT 57.446 32.000 7.46 0.00 40.17 2.32
190 191 6.978343 ACCGAACTCGAATTCATATTCAAA 57.022 33.333 7.46 0.00 40.17 2.69
191 192 6.978343 AACCGAACTCGAATTCATATTCAA 57.022 33.333 7.46 0.00 40.17 2.69
192 193 6.183360 CCAAACCGAACTCGAATTCATATTCA 60.183 38.462 7.46 0.00 40.17 2.57
193 194 6.036735 TCCAAACCGAACTCGAATTCATATTC 59.963 38.462 7.46 4.62 43.02 1.75
194 195 5.878116 TCCAAACCGAACTCGAATTCATATT 59.122 36.000 7.46 0.00 43.02 1.28
195 196 5.424757 TCCAAACCGAACTCGAATTCATAT 58.575 37.500 7.46 0.00 43.02 1.78
196 197 4.823157 TCCAAACCGAACTCGAATTCATA 58.177 39.130 7.46 0.00 43.02 2.15
197 198 3.670625 TCCAAACCGAACTCGAATTCAT 58.329 40.909 7.46 0.00 43.02 2.57
198 199 3.114668 TCCAAACCGAACTCGAATTCA 57.885 42.857 7.46 0.00 43.02 2.57
199 200 3.682858 TGATCCAAACCGAACTCGAATTC 59.317 43.478 0.00 0.00 43.02 2.17
200 201 3.670625 TGATCCAAACCGAACTCGAATT 58.329 40.909 0.00 0.00 43.02 2.17
201 202 3.262420 CTGATCCAAACCGAACTCGAAT 58.738 45.455 0.00 0.00 43.02 3.34
202 203 2.611971 CCTGATCCAAACCGAACTCGAA 60.612 50.000 0.00 0.00 43.02 3.71
203 204 1.067142 CCTGATCCAAACCGAACTCGA 60.067 52.381 0.00 0.00 43.02 4.04
204 205 1.067142 TCCTGATCCAAACCGAACTCG 60.067 52.381 0.00 0.00 39.44 4.18
205 206 2.762535 TCCTGATCCAAACCGAACTC 57.237 50.000 0.00 0.00 0.00 3.01
206 207 2.571653 TCATCCTGATCCAAACCGAACT 59.428 45.455 0.00 0.00 0.00 3.01
207 208 2.985896 TCATCCTGATCCAAACCGAAC 58.014 47.619 0.00 0.00 0.00 3.95
208 209 3.009033 ACTTCATCCTGATCCAAACCGAA 59.991 43.478 0.00 0.00 0.00 4.30
209 210 2.571653 ACTTCATCCTGATCCAAACCGA 59.428 45.455 0.00 0.00 0.00 4.69
210 211 2.991250 ACTTCATCCTGATCCAAACCG 58.009 47.619 0.00 0.00 0.00 4.44
211 212 5.710099 TGTAAACTTCATCCTGATCCAAACC 59.290 40.000 0.00 0.00 0.00 3.27
212 213 6.817765 TGTAAACTTCATCCTGATCCAAAC 57.182 37.500 0.00 0.00 0.00 2.93
213 214 7.831691 TTTGTAAACTTCATCCTGATCCAAA 57.168 32.000 0.00 0.00 0.00 3.28
214 215 7.831691 TTTTGTAAACTTCATCCTGATCCAA 57.168 32.000 0.00 0.00 0.00 3.53
215 216 8.421249 AATTTTGTAAACTTCATCCTGATCCA 57.579 30.769 0.00 0.00 0.00 3.41
231 232 9.585099 GCCTTGTGATCATCATTAATTTTGTAA 57.415 29.630 0.00 0.00 0.00 2.41
232 233 8.747471 TGCCTTGTGATCATCATTAATTTTGTA 58.253 29.630 0.00 0.00 0.00 2.41
233 234 7.546667 GTGCCTTGTGATCATCATTAATTTTGT 59.453 33.333 0.00 0.00 0.00 2.83
234 235 7.010738 GGTGCCTTGTGATCATCATTAATTTTG 59.989 37.037 0.00 0.00 0.00 2.44
235 236 7.043565 GGTGCCTTGTGATCATCATTAATTTT 58.956 34.615 0.00 0.00 0.00 1.82
236 237 6.154877 TGGTGCCTTGTGATCATCATTAATTT 59.845 34.615 0.00 0.00 0.00 1.82
237 238 5.657745 TGGTGCCTTGTGATCATCATTAATT 59.342 36.000 0.00 0.00 0.00 1.40
238 239 5.202765 TGGTGCCTTGTGATCATCATTAAT 58.797 37.500 0.00 0.00 0.00 1.40
239 240 4.598022 TGGTGCCTTGTGATCATCATTAA 58.402 39.130 0.00 0.00 0.00 1.40
240 241 4.233632 TGGTGCCTTGTGATCATCATTA 57.766 40.909 0.00 0.00 0.00 1.90
241 242 3.090210 TGGTGCCTTGTGATCATCATT 57.910 42.857 0.00 0.00 0.00 2.57
242 243 2.812836 TGGTGCCTTGTGATCATCAT 57.187 45.000 0.00 0.00 0.00 2.45
243 244 2.812836 ATGGTGCCTTGTGATCATCA 57.187 45.000 0.00 0.00 0.00 3.07
244 245 3.018856 TGAATGGTGCCTTGTGATCATC 58.981 45.455 0.00 0.00 0.00 2.92
245 246 3.090210 TGAATGGTGCCTTGTGATCAT 57.910 42.857 0.00 0.00 0.00 2.45
246 247 2.583024 TGAATGGTGCCTTGTGATCA 57.417 45.000 0.00 0.00 0.00 2.92
247 248 2.756760 ACATGAATGGTGCCTTGTGATC 59.243 45.455 0.00 0.00 0.00 2.92
248 249 2.494471 CACATGAATGGTGCCTTGTGAT 59.506 45.455 0.00 0.00 39.39 3.06
249 250 1.887854 CACATGAATGGTGCCTTGTGA 59.112 47.619 0.00 0.00 39.39 3.58
250 251 1.614903 ACACATGAATGGTGCCTTGTG 59.385 47.619 0.00 0.00 41.39 3.33
251 252 1.999648 ACACATGAATGGTGCCTTGT 58.000 45.000 0.00 0.00 39.87 3.16
252 253 3.084039 ACTACACATGAATGGTGCCTTG 58.916 45.455 0.00 0.00 39.87 3.61
253 254 3.439857 ACTACACATGAATGGTGCCTT 57.560 42.857 0.00 0.00 39.87 4.35
254 255 3.439857 AACTACACATGAATGGTGCCT 57.560 42.857 0.00 0.00 39.87 4.75
255 256 4.094887 CAGTAACTACACATGAATGGTGCC 59.905 45.833 0.00 0.00 39.87 5.01
256 257 4.695455 ACAGTAACTACACATGAATGGTGC 59.305 41.667 0.00 0.00 39.87 5.01
257 258 6.036083 GCTACAGTAACTACACATGAATGGTG 59.964 42.308 0.00 0.00 41.95 4.17
258 259 6.070767 AGCTACAGTAACTACACATGAATGGT 60.071 38.462 0.00 0.00 0.00 3.55
259 260 6.341316 AGCTACAGTAACTACACATGAATGG 58.659 40.000 0.00 0.00 0.00 3.16
260 261 7.834068 AAGCTACAGTAACTACACATGAATG 57.166 36.000 0.00 0.00 0.00 2.67
261 262 9.367444 GTTAAGCTACAGTAACTACACATGAAT 57.633 33.333 0.00 0.00 0.00 2.57
262 263 8.582437 AGTTAAGCTACAGTAACTACACATGAA 58.418 33.333 6.74 0.00 38.48 2.57
263 264 8.118976 AGTTAAGCTACAGTAACTACACATGA 57.881 34.615 6.74 0.00 38.48 3.07
279 280 1.755179 ACGCCCGAGTAGTTAAGCTA 58.245 50.000 0.00 0.00 0.00 3.32
280 281 0.893447 AACGCCCGAGTAGTTAAGCT 59.107 50.000 0.00 0.00 0.00 3.74
281 282 2.188524 GTAACGCCCGAGTAGTTAAGC 58.811 52.381 0.00 0.00 32.94 3.09
282 283 3.119708 ACTGTAACGCCCGAGTAGTTAAG 60.120 47.826 0.00 0.00 32.94 1.85
283 284 2.819608 ACTGTAACGCCCGAGTAGTTAA 59.180 45.455 0.00 0.00 32.94 2.01
284 285 2.436417 ACTGTAACGCCCGAGTAGTTA 58.564 47.619 0.00 0.00 0.00 2.24
285 286 1.251251 ACTGTAACGCCCGAGTAGTT 58.749 50.000 0.00 0.00 0.00 2.24
286 287 1.251251 AACTGTAACGCCCGAGTAGT 58.749 50.000 0.00 0.00 0.00 2.73
287 288 2.358939 AAACTGTAACGCCCGAGTAG 57.641 50.000 0.00 0.00 0.00 2.57
288 289 2.406130 CAAAACTGTAACGCCCGAGTA 58.594 47.619 0.00 0.00 0.00 2.59
289 290 1.223187 CAAAACTGTAACGCCCGAGT 58.777 50.000 0.00 0.00 0.00 4.18
290 291 0.110373 GCAAAACTGTAACGCCCGAG 60.110 55.000 0.00 0.00 0.00 4.63
291 292 1.508808 GGCAAAACTGTAACGCCCGA 61.509 55.000 0.00 0.00 36.73 5.14
292 293 1.081708 GGCAAAACTGTAACGCCCG 60.082 57.895 3.58 0.00 36.73 6.13
293 294 1.081708 CGGCAAAACTGTAACGCCC 60.082 57.895 8.23 0.00 39.69 6.13
294 295 1.728074 GCGGCAAAACTGTAACGCC 60.728 57.895 0.00 4.65 41.02 5.68
295 296 2.072654 CGCGGCAAAACTGTAACGC 61.073 57.895 0.00 0.00 43.15 4.84
296 297 1.439693 CCGCGGCAAAACTGTAACG 60.440 57.895 14.67 0.00 0.00 3.18
297 298 0.308376 TTCCGCGGCAAAACTGTAAC 59.692 50.000 23.51 0.00 0.00 2.50
298 299 1.022735 TTTCCGCGGCAAAACTGTAA 58.977 45.000 23.51 2.53 0.00 2.41
299 300 0.308376 GTTTCCGCGGCAAAACTGTA 59.692 50.000 26.60 4.39 33.57 2.74
300 301 1.065109 GTTTCCGCGGCAAAACTGT 59.935 52.632 26.60 0.00 33.57 3.55
301 302 0.526524 TTGTTTCCGCGGCAAAACTG 60.527 50.000 30.78 6.25 36.54 3.16
302 303 0.387565 ATTGTTTCCGCGGCAAAACT 59.612 45.000 30.78 16.96 36.54 2.66
303 304 0.506506 CATTGTTTCCGCGGCAAAAC 59.493 50.000 26.96 26.96 36.21 2.43
304 305 1.218230 GCATTGTTTCCGCGGCAAAA 61.218 50.000 23.51 14.67 0.00 2.44
305 306 1.663074 GCATTGTTTCCGCGGCAAA 60.663 52.632 23.51 18.66 0.00 3.68
306 307 2.049618 GCATTGTTTCCGCGGCAA 60.050 55.556 23.51 19.77 0.00 4.52
307 308 4.397090 CGCATTGTTTCCGCGGCA 62.397 61.111 23.51 6.92 45.08 5.69
311 312 3.969642 CTGGCCGCATTGTTTCCGC 62.970 63.158 0.00 0.00 0.00 5.54
312 313 2.179018 CTGGCCGCATTGTTTCCG 59.821 61.111 0.00 0.00 0.00 4.30
313 314 2.125952 GCTGGCCGCATTGTTTCC 60.126 61.111 13.61 0.00 38.92 3.13
314 315 1.153958 GAGCTGGCCGCATTGTTTC 60.154 57.895 19.30 5.65 42.61 2.78
315 316 2.639327 GGAGCTGGCCGCATTGTTT 61.639 57.895 19.30 0.21 42.61 2.83
316 317 3.064324 GGAGCTGGCCGCATTGTT 61.064 61.111 19.30 0.87 42.61 2.83
317 318 3.866379 TTGGAGCTGGCCGCATTGT 62.866 57.895 19.30 1.21 42.61 2.71
318 319 1.952102 ATTTGGAGCTGGCCGCATTG 61.952 55.000 19.30 0.00 42.61 2.82
319 320 1.683365 ATTTGGAGCTGGCCGCATT 60.683 52.632 19.30 2.21 42.61 3.56
320 321 2.043652 ATTTGGAGCTGGCCGCAT 60.044 55.556 19.30 6.75 42.61 4.73
321 322 3.063704 CATTTGGAGCTGGCCGCA 61.064 61.111 19.30 1.45 42.61 5.69
322 323 4.503314 GCATTTGGAGCTGGCCGC 62.503 66.667 11.02 11.02 39.57 6.53
323 324 3.063704 TGCATTTGGAGCTGGCCG 61.064 61.111 0.00 0.00 0.00 6.13
324 325 2.575461 GTGCATTTGGAGCTGGCC 59.425 61.111 0.00 0.00 0.00 5.36
325 326 2.180017 CGTGCATTTGGAGCTGGC 59.820 61.111 0.00 0.00 0.00 4.85
326 327 2.703798 CCCGTGCATTTGGAGCTGG 61.704 63.158 0.00 0.00 0.00 4.85
327 328 2.879907 CCCGTGCATTTGGAGCTG 59.120 61.111 0.00 0.00 0.00 4.24
328 329 3.064324 GCCCGTGCATTTGGAGCT 61.064 61.111 4.33 0.00 37.47 4.09
329 330 3.056313 GAGCCCGTGCATTTGGAGC 62.056 63.158 4.33 6.18 41.13 4.70
330 331 2.409870 GGAGCCCGTGCATTTGGAG 61.410 63.158 4.33 0.00 41.13 3.86
331 332 2.361104 GGAGCCCGTGCATTTGGA 60.361 61.111 4.33 0.00 41.13 3.53
332 333 3.814268 CGGAGCCCGTGCATTTGG 61.814 66.667 5.56 0.00 42.73 3.28
345 346 1.675641 CCCCAAAACTGAGGCGGAG 60.676 63.158 0.00 0.00 0.00 4.63
346 347 2.434331 CCCCAAAACTGAGGCGGA 59.566 61.111 0.00 0.00 0.00 5.54
347 348 2.676471 CCCCCAAAACTGAGGCGG 60.676 66.667 0.00 0.00 0.00 6.13
364 365 4.029809 CACCCTCGGTCCCCAACC 62.030 72.222 0.00 0.00 45.45 3.77
365 366 3.246880 ACACCCTCGGTCCCCAAC 61.247 66.667 0.00 0.00 31.02 3.77
366 367 2.926242 GACACCCTCGGTCCCCAA 60.926 66.667 0.00 0.00 31.02 4.12
367 368 4.242586 TGACACCCTCGGTCCCCA 62.243 66.667 0.00 0.00 31.02 4.96
368 369 3.391382 CTGACACCCTCGGTCCCC 61.391 72.222 0.00 0.00 31.02 4.81
369 370 2.283676 TCTGACACCCTCGGTCCC 60.284 66.667 0.00 0.00 31.02 4.46
370 371 3.007973 GCTCTGACACCCTCGGTCC 62.008 68.421 0.00 0.00 31.02 4.46
371 372 2.574399 GCTCTGACACCCTCGGTC 59.426 66.667 0.00 0.00 31.02 4.79
372 373 2.997897 GGCTCTGACACCCTCGGT 60.998 66.667 0.00 0.00 35.62 4.69
373 374 3.775654 GGGCTCTGACACCCTCGG 61.776 72.222 4.13 0.00 43.36 4.63
374 375 3.775654 GGGGCTCTGACACCCTCG 61.776 72.222 10.12 0.00 46.19 4.63
375 376 2.607750 TGGGGCTCTGACACCCTC 60.608 66.667 11.87 3.97 46.19 4.30
376 377 2.930562 GTGGGGCTCTGACACCCT 60.931 66.667 11.87 0.00 46.19 4.34
377 378 4.394712 CGTGGGGCTCTGACACCC 62.395 72.222 5.21 5.21 46.24 4.61
378 379 3.626924 ACGTGGGGCTCTGACACC 61.627 66.667 0.00 0.00 0.00 4.16
379 380 2.357517 CACGTGGGGCTCTGACAC 60.358 66.667 7.95 0.00 0.00 3.67
380 381 2.523168 TCACGTGGGGCTCTGACA 60.523 61.111 17.00 0.00 0.00 3.58
381 382 2.048127 GTCACGTGGGGCTCTGAC 60.048 66.667 17.00 0.00 0.00 3.51
382 383 3.680786 CGTCACGTGGGGCTCTGA 61.681 66.667 17.00 0.00 0.00 3.27
383 384 4.742201 CCGTCACGTGGGGCTCTG 62.742 72.222 17.00 0.00 0.00 3.35
390 391 2.600475 CCGTTTTCCCGTCACGTGG 61.600 63.158 17.00 0.00 31.83 4.94
391 392 1.592131 TCCGTTTTCCCGTCACGTG 60.592 57.895 9.94 9.94 31.83 4.49
392 393 1.592400 GTCCGTTTTCCCGTCACGT 60.592 57.895 0.00 0.00 31.83 4.49
393 394 1.592131 TGTCCGTTTTCCCGTCACG 60.592 57.895 0.00 0.00 0.00 4.35
394 395 1.501337 GGTGTCCGTTTTCCCGTCAC 61.501 60.000 0.00 0.00 33.35 3.67
395 396 1.227615 GGTGTCCGTTTTCCCGTCA 60.228 57.895 0.00 0.00 0.00 4.35
396 397 0.318120 TAGGTGTCCGTTTTCCCGTC 59.682 55.000 0.00 0.00 0.00 4.79
397 398 0.319405 CTAGGTGTCCGTTTTCCCGT 59.681 55.000 0.00 0.00 0.00 5.28
398 399 0.604578 TCTAGGTGTCCGTTTTCCCG 59.395 55.000 0.00 0.00 0.00 5.14
399 400 1.622312 AGTCTAGGTGTCCGTTTTCCC 59.378 52.381 0.00 0.00 0.00 3.97
400 401 3.509184 ACTAGTCTAGGTGTCCGTTTTCC 59.491 47.826 11.61 0.00 0.00 3.13
401 402 4.380339 GGACTAGTCTAGGTGTCCGTTTTC 60.380 50.000 21.88 0.00 39.39 2.29
402 403 3.509184 GGACTAGTCTAGGTGTCCGTTTT 59.491 47.826 21.88 0.00 39.39 2.43
403 404 3.087781 GGACTAGTCTAGGTGTCCGTTT 58.912 50.000 21.88 0.00 39.39 3.60
404 405 2.720915 GGACTAGTCTAGGTGTCCGTT 58.279 52.381 21.88 0.00 39.39 4.44
405 406 2.416680 GGACTAGTCTAGGTGTCCGT 57.583 55.000 21.88 0.00 39.39 4.69
407 408 1.023502 GCGGACTAGTCTAGGTGTCC 58.976 60.000 21.88 8.86 43.86 4.02
408 409 0.656785 CGCGGACTAGTCTAGGTGTC 59.343 60.000 21.88 3.10 0.00 3.67
409 410 0.747283 CCGCGGACTAGTCTAGGTGT 60.747 60.000 24.07 0.00 0.00 4.16
410 411 0.463295 TCCGCGGACTAGTCTAGGTG 60.463 60.000 27.28 16.42 0.00 4.00
411 412 0.463474 GTCCGCGGACTAGTCTAGGT 60.463 60.000 43.32 0.00 41.57 3.08
412 413 0.463295 TGTCCGCGGACTAGTCTAGG 60.463 60.000 46.72 20.19 44.80 3.02
413 414 1.376543 TTGTCCGCGGACTAGTCTAG 58.623 55.000 46.72 16.61 44.80 2.43
414 415 1.825090 TTTGTCCGCGGACTAGTCTA 58.175 50.000 46.72 30.11 44.80 2.59
415 416 1.183549 ATTTGTCCGCGGACTAGTCT 58.816 50.000 46.72 29.27 44.80 3.24
416 417 2.457970 GTATTTGTCCGCGGACTAGTC 58.542 52.381 46.72 31.58 44.80 2.59
417 418 1.202222 CGTATTTGTCCGCGGACTAGT 60.202 52.381 46.72 39.29 44.80 2.57
418 419 1.474017 CGTATTTGTCCGCGGACTAG 58.526 55.000 46.72 29.30 44.80 2.57
419 420 0.101040 CCGTATTTGTCCGCGGACTA 59.899 55.000 46.72 40.54 46.33 2.59
420 421 1.153706 CCGTATTTGTCCGCGGACT 60.154 57.895 46.72 34.18 46.33 3.85
421 422 2.169146 CCCGTATTTGTCCGCGGAC 61.169 63.158 43.88 43.88 46.33 4.79
422 423 2.184836 CCCGTATTTGTCCGCGGA 59.815 61.111 27.28 27.28 46.33 5.54
423 424 2.169146 GTCCCGTATTTGTCCGCGG 61.169 63.158 22.12 22.12 43.40 6.46
424 425 2.169146 GGTCCCGTATTTGTCCGCG 61.169 63.158 0.00 0.00 0.00 6.46
425 426 2.169146 CGGTCCCGTATTTGTCCGC 61.169 63.158 0.00 0.00 34.35 5.54
426 427 2.169146 GCGGTCCCGTATTTGTCCG 61.169 63.158 7.66 0.00 42.09 4.79
427 428 0.808847 GAGCGGTCCCGTATTTGTCC 60.809 60.000 2.39 0.00 42.09 4.02
428 429 1.143969 CGAGCGGTCCCGTATTTGTC 61.144 60.000 9.39 0.00 42.09 3.18
429 430 1.153706 CGAGCGGTCCCGTATTTGT 60.154 57.895 9.39 0.00 42.09 2.83
430 431 1.881252 CCGAGCGGTCCCGTATTTG 60.881 63.158 9.39 0.00 42.09 2.32
431 432 2.497770 CCGAGCGGTCCCGTATTT 59.502 61.111 9.39 0.00 42.09 1.40
452 453 3.645268 AAACCTCCTGCGCCCATCC 62.645 63.158 4.18 0.00 0.00 3.51
453 454 2.044946 AAACCTCCTGCGCCCATC 60.045 61.111 4.18 0.00 0.00 3.51
454 455 2.361610 CAAACCTCCTGCGCCCAT 60.362 61.111 4.18 0.00 0.00 4.00
455 456 3.551496 CTCAAACCTCCTGCGCCCA 62.551 63.158 4.18 0.00 0.00 5.36
456 457 2.747855 CTCAAACCTCCTGCGCCC 60.748 66.667 4.18 0.00 0.00 6.13
457 458 2.747855 CCTCAAACCTCCTGCGCC 60.748 66.667 4.18 0.00 0.00 6.53
458 459 2.747855 CCCTCAAACCTCCTGCGC 60.748 66.667 0.00 0.00 0.00 6.09
459 460 1.376037 GACCCTCAAACCTCCTGCG 60.376 63.158 0.00 0.00 0.00 5.18
460 461 1.002011 GGACCCTCAAACCTCCTGC 60.002 63.158 0.00 0.00 0.00 4.85
461 462 1.296715 CGGACCCTCAAACCTCCTG 59.703 63.158 0.00 0.00 0.00 3.86
462 463 2.593956 GCGGACCCTCAAACCTCCT 61.594 63.158 0.00 0.00 0.00 3.69
463 464 2.046217 GCGGACCCTCAAACCTCC 60.046 66.667 0.00 0.00 0.00 4.30
464 465 2.434359 CGCGGACCCTCAAACCTC 60.434 66.667 0.00 0.00 0.00 3.85
465 466 2.814835 AACGCGGACCCTCAAACCT 61.815 57.895 12.47 0.00 0.00 3.50
466 467 2.281276 AACGCGGACCCTCAAACC 60.281 61.111 12.47 0.00 0.00 3.27
467 468 2.613506 CCAACGCGGACCCTCAAAC 61.614 63.158 12.47 0.00 36.56 2.93
468 469 2.281208 CCAACGCGGACCCTCAAA 60.281 61.111 12.47 0.00 36.56 2.69
469 470 3.234630 CTCCAACGCGGACCCTCAA 62.235 63.158 12.47 0.00 39.64 3.02
470 471 3.691342 CTCCAACGCGGACCCTCA 61.691 66.667 12.47 0.00 39.64 3.86
471 472 2.722201 ATCTCCAACGCGGACCCTC 61.722 63.158 12.47 0.00 39.64 4.30
472 473 2.683933 ATCTCCAACGCGGACCCT 60.684 61.111 12.47 0.00 39.64 4.34
473 474 2.511600 CATCTCCAACGCGGACCC 60.512 66.667 12.47 0.00 39.64 4.46
474 475 3.195698 GCATCTCCAACGCGGACC 61.196 66.667 12.47 0.00 39.64 4.46
475 476 2.292794 TAGGCATCTCCAACGCGGAC 62.293 60.000 12.47 0.00 39.64 4.79
476 477 1.609635 TTAGGCATCTCCAACGCGGA 61.610 55.000 12.47 0.00 43.61 5.54
477 478 1.153449 TTAGGCATCTCCAACGCGG 60.153 57.895 12.47 0.00 37.29 6.46
478 479 0.179111 TCTTAGGCATCTCCAACGCG 60.179 55.000 3.53 3.53 37.29 6.01
479 480 2.246719 ATCTTAGGCATCTCCAACGC 57.753 50.000 0.00 0.00 37.29 4.84
480 481 6.662616 CATTTAATCTTAGGCATCTCCAACG 58.337 40.000 0.00 0.00 37.29 4.10
481 482 6.264067 AGCATTTAATCTTAGGCATCTCCAAC 59.736 38.462 0.00 0.00 37.29 3.77
482 483 6.367983 AGCATTTAATCTTAGGCATCTCCAA 58.632 36.000 0.00 0.00 37.29 3.53
483 484 5.945310 AGCATTTAATCTTAGGCATCTCCA 58.055 37.500 0.00 0.00 37.29 3.86
484 485 7.986085 TTAGCATTTAATCTTAGGCATCTCC 57.014 36.000 0.00 0.00 0.00 3.71
487 488 9.801873 TGTTTTTAGCATTTAATCTTAGGCATC 57.198 29.630 0.00 0.00 0.00 3.91
498 499 9.494271 TGGTGCATTATTGTTTTTAGCATTTAA 57.506 25.926 0.00 0.00 32.75 1.52
499 500 9.494271 TTGGTGCATTATTGTTTTTAGCATTTA 57.506 25.926 0.00 0.00 32.75 1.40
500 501 7.976135 TGGTGCATTATTGTTTTTAGCATTT 57.024 28.000 0.00 0.00 32.75 2.32
501 502 7.443575 TGTTGGTGCATTATTGTTTTTAGCATT 59.556 29.630 0.00 0.00 32.75 3.56
502 503 6.933521 TGTTGGTGCATTATTGTTTTTAGCAT 59.066 30.769 0.00 0.00 32.75 3.79
503 504 6.283694 TGTTGGTGCATTATTGTTTTTAGCA 58.716 32.000 0.00 0.00 0.00 3.49
504 505 6.777526 TGTTGGTGCATTATTGTTTTTAGC 57.222 33.333 0.00 0.00 0.00 3.09
505 506 8.986847 TGATTGTTGGTGCATTATTGTTTTTAG 58.013 29.630 0.00 0.00 0.00 1.85
506 507 8.893219 TGATTGTTGGTGCATTATTGTTTTTA 57.107 26.923 0.00 0.00 0.00 1.52
507 508 7.798596 TGATTGTTGGTGCATTATTGTTTTT 57.201 28.000 0.00 0.00 0.00 1.94
508 509 7.982761 ATGATTGTTGGTGCATTATTGTTTT 57.017 28.000 0.00 0.00 0.00 2.43
509 510 7.982761 AATGATTGTTGGTGCATTATTGTTT 57.017 28.000 0.00 0.00 0.00 2.83
510 511 7.278424 GCTAATGATTGTTGGTGCATTATTGTT 59.722 33.333 0.00 0.00 34.03 2.83
511 512 6.757947 GCTAATGATTGTTGGTGCATTATTGT 59.242 34.615 0.00 0.00 34.03 2.71
512 513 6.757478 TGCTAATGATTGTTGGTGCATTATTG 59.243 34.615 0.00 0.00 34.03 1.90
513 514 6.757947 GTGCTAATGATTGTTGGTGCATTATT 59.242 34.615 0.00 0.00 34.03 1.40
514 515 6.097270 AGTGCTAATGATTGTTGGTGCATTAT 59.903 34.615 0.00 0.00 34.03 1.28
515 516 5.418524 AGTGCTAATGATTGTTGGTGCATTA 59.581 36.000 0.00 0.00 33.45 1.90
516 517 4.221262 AGTGCTAATGATTGTTGGTGCATT 59.779 37.500 0.00 0.00 35.38 3.56
517 518 3.765511 AGTGCTAATGATTGTTGGTGCAT 59.234 39.130 0.00 0.00 0.00 3.96
518 519 3.156293 AGTGCTAATGATTGTTGGTGCA 58.844 40.909 0.00 0.00 0.00 4.57
519 520 3.428045 GGAGTGCTAATGATTGTTGGTGC 60.428 47.826 0.00 0.00 0.00 5.01
520 521 3.758023 TGGAGTGCTAATGATTGTTGGTG 59.242 43.478 0.00 0.00 0.00 4.17
521 522 4.032960 TGGAGTGCTAATGATTGTTGGT 57.967 40.909 0.00 0.00 0.00 3.67
522 523 5.125900 TCAATGGAGTGCTAATGATTGTTGG 59.874 40.000 0.00 0.00 0.00 3.77
523 524 6.198650 TCAATGGAGTGCTAATGATTGTTG 57.801 37.500 0.00 0.00 0.00 3.33
524 525 6.604396 TGATCAATGGAGTGCTAATGATTGTT 59.396 34.615 0.00 0.00 0.00 2.83
525 526 6.124340 TGATCAATGGAGTGCTAATGATTGT 58.876 36.000 0.00 0.00 0.00 2.71
526 527 6.628919 TGATCAATGGAGTGCTAATGATTG 57.371 37.500 0.00 0.00 0.00 2.67
527 528 7.834881 ATTGATCAATGGAGTGCTAATGATT 57.165 32.000 20.11 0.00 0.00 2.57
528 529 7.834881 AATTGATCAATGGAGTGCTAATGAT 57.165 32.000 21.39 0.00 0.00 2.45
529 530 7.649533 AAATTGATCAATGGAGTGCTAATGA 57.350 32.000 21.39 0.00 0.00 2.57
530 531 7.762615 ACAAAATTGATCAATGGAGTGCTAATG 59.237 33.333 21.39 9.17 0.00 1.90
531 532 7.844009 ACAAAATTGATCAATGGAGTGCTAAT 58.156 30.769 21.39 0.00 0.00 1.73
532 533 7.230849 ACAAAATTGATCAATGGAGTGCTAA 57.769 32.000 21.39 0.00 0.00 3.09
533 534 6.839124 ACAAAATTGATCAATGGAGTGCTA 57.161 33.333 21.39 0.00 0.00 3.49
534 535 5.733620 ACAAAATTGATCAATGGAGTGCT 57.266 34.783 21.39 1.16 0.00 4.40
551 552 8.347035 GCTTGTGTAGGAGTTGTTATTACAAAA 58.653 33.333 0.00 0.00 45.33 2.44
568 573 6.299604 CACTTACTGAAAATCGCTTGTGTAG 58.700 40.000 0.00 0.00 0.00 2.74
592 597 0.526211 GTGCCCCGATGAAGAAAACC 59.474 55.000 0.00 0.00 0.00 3.27
605 610 2.092646 TGTACCATCTTGTATGTGCCCC 60.093 50.000 0.00 0.00 0.00 5.80
629 634 3.814842 TCGCAACTGAATTTCACTCATGT 59.185 39.130 0.00 0.00 0.00 3.21
630 635 4.408993 TCGCAACTGAATTTCACTCATG 57.591 40.909 0.00 0.00 0.00 3.07
635 640 3.605486 GCTGATTCGCAACTGAATTTCAC 59.395 43.478 0.00 0.00 38.65 3.18
650 655 4.272018 CCTAGCACTGTATGTTGCTGATTC 59.728 45.833 6.34 0.00 35.66 2.52
670 675 4.473559 AGTACTAGCATTTTGGCTTCCCTA 59.526 41.667 0.00 0.00 42.71 3.53
673 678 3.181496 GCAGTACTAGCATTTTGGCTTCC 60.181 47.826 11.05 0.00 42.71 3.46
728 734 2.906182 GATGGACGGTGCAGATGCGA 62.906 60.000 8.63 0.00 45.83 5.10
744 750 0.464373 CGTTGGATCAGGGGTGGATG 60.464 60.000 0.00 0.00 0.00 3.51
745 751 0.914417 ACGTTGGATCAGGGGTGGAT 60.914 55.000 0.00 0.00 0.00 3.41
783 795 3.459063 GCGCTACGAAGGGAGGGT 61.459 66.667 0.00 0.00 37.88 4.34
796 809 3.483869 GGGAGGGATGAAGGCGCT 61.484 66.667 7.64 0.00 0.00 5.92
897 911 1.346479 TTGTGAGGGTTCGTGGGGAA 61.346 55.000 0.00 0.00 0.00 3.97
908 922 1.673665 GCTGGCTGAGTTGTGAGGG 60.674 63.158 0.00 0.00 0.00 4.30
939 953 1.997874 CTTGGGAGGGTGGGAGAGG 60.998 68.421 0.00 0.00 0.00 3.69
942 956 0.548510 GATTCTTGGGAGGGTGGGAG 59.451 60.000 0.00 0.00 0.00 4.30
1288 1305 3.066190 CACCAGGTACGCCTCGGA 61.066 66.667 0.00 0.00 44.97 4.55
1308 1325 0.602905 GGTTGGTGTCCTCGAACAGG 60.603 60.000 0.00 0.00 45.15 4.00
1443 1460 1.878088 GGGTCAACCGAGAAGGAAAAC 59.122 52.381 0.00 0.00 45.00 2.43
1444 1461 1.202842 GGGGTCAACCGAGAAGGAAAA 60.203 52.381 0.00 0.00 45.00 2.29
1445 1462 0.399075 GGGGTCAACCGAGAAGGAAA 59.601 55.000 0.00 0.00 45.00 3.13
1484 1501 4.869297 GCACGACTAGACTAGACTAACAGA 59.131 45.833 16.55 0.00 0.00 3.41
1524 1541 2.737252 GACTGACAGGACGGAACAAATC 59.263 50.000 7.51 0.00 0.00 2.17
1533 1550 0.891373 ATCACCAGACTGACAGGACG 59.109 55.000 7.51 0.00 0.00 4.79
1536 1553 2.037641 TCAACATCACCAGACTGACAGG 59.962 50.000 7.51 0.00 0.00 4.00
1539 1556 4.631813 GGTAATCAACATCACCAGACTGAC 59.368 45.833 3.32 0.00 0.00 3.51
1541 1558 3.618594 CGGTAATCAACATCACCAGACTG 59.381 47.826 0.00 0.00 0.00 3.51
1546 1575 1.280710 AGCCGGTAATCAACATCACCA 59.719 47.619 1.90 0.00 0.00 4.17
1547 1576 1.940613 GAGCCGGTAATCAACATCACC 59.059 52.381 1.90 0.00 0.00 4.02
1563 1592 2.533266 CTCCATTGCAATTTTCGAGCC 58.467 47.619 9.83 0.00 0.00 4.70
1598 1633 5.987777 TCAACGTGAACTCCGAAATTAAA 57.012 34.783 0.00 0.00 0.00 1.52
1607 1642 0.521735 GGGCAATCAACGTGAACTCC 59.478 55.000 0.00 0.00 0.00 3.85
1615 1650 6.377327 AGAAAATACTATGGGCAATCAACG 57.623 37.500 0.00 0.00 0.00 4.10
1654 1689 2.932614 GGTCGAGATCACTCACCAAATG 59.067 50.000 0.00 0.00 42.72 2.32
1729 1769 2.734723 GTCTGACGCGCAAGAGCA 60.735 61.111 5.73 0.00 42.78 4.26
1789 1829 6.542821 TGGATGGTACTGAAAAGATCAAAGT 58.457 36.000 0.00 0.00 37.67 2.66
1818 1859 1.077357 TGACGTGCCCTTGTTTGGT 60.077 52.632 0.00 0.00 0.00 3.67
1841 1882 9.436957 TTTTGTTTAGTTTTGCTTGTAATGGAA 57.563 25.926 0.00 0.00 0.00 3.53
1849 1890 7.010091 AGGTCGAATTTTGTTTAGTTTTGCTTG 59.990 33.333 0.00 0.00 0.00 4.01
1859 1900 8.441312 AGTAAGTTCAGGTCGAATTTTGTTTA 57.559 30.769 0.00 0.00 35.40 2.01
1883 1924 8.906867 ACAACAATATGGAATATGACCTTGAAG 58.093 33.333 0.00 0.00 38.94 3.02
1911 1952 3.394674 TGAATCCTCGTAAGCAACACA 57.605 42.857 0.00 0.00 37.18 3.72
1912 1953 4.391830 TCAATGAATCCTCGTAAGCAACAC 59.608 41.667 0.00 0.00 37.18 3.32
1914 1955 4.391830 TGTCAATGAATCCTCGTAAGCAAC 59.608 41.667 0.00 0.00 37.18 4.17
1917 1958 3.557595 CCTGTCAATGAATCCTCGTAAGC 59.442 47.826 0.00 0.00 37.18 3.09
1922 1963 2.679837 CAACCCTGTCAATGAATCCTCG 59.320 50.000 0.00 0.00 0.00 4.63
1943 1984 4.963953 CAGCGTCGATCAAACCAAATTATC 59.036 41.667 0.00 0.00 0.00 1.75
1956 1997 2.161486 GTCAGGCACAGCGTCGATC 61.161 63.158 0.00 0.00 0.00 3.69
1962 2003 1.195448 CAAGTTTAGTCAGGCACAGCG 59.805 52.381 0.00 0.00 0.00 5.18
2032 2087 2.017782 GAGTGACTCCTACTCATCGCA 58.982 52.381 0.00 0.00 43.12 5.10
2043 2103 1.547820 TCTGCAGTGATGAGTGACTCC 59.452 52.381 14.67 0.00 0.00 3.85
2047 2107 1.406477 GGCATCTGCAGTGATGAGTGA 60.406 52.381 17.60 0.00 44.71 3.41
2067 2127 0.392863 TCCATGTCATTGCCACCGAG 60.393 55.000 0.00 0.00 0.00 4.63
2090 2168 3.844211 ACAAGAATTAGTGGGCTAGGACA 59.156 43.478 0.00 0.00 0.00 4.02
2091 2169 4.192317 CACAAGAATTAGTGGGCTAGGAC 58.808 47.826 0.00 0.00 32.24 3.85
2104 2182 0.314935 CTGCGGCAACCACAAGAATT 59.685 50.000 3.44 0.00 0.00 2.17
2167 2248 8.306313 ACAGTAATGGATGTTCTGTAGATACA 57.694 34.615 0.00 0.00 37.55 2.29
2168 2249 8.634444 AGACAGTAATGGATGTTCTGTAGATAC 58.366 37.037 0.00 0.00 39.08 2.24
2169 2250 8.768501 AGACAGTAATGGATGTTCTGTAGATA 57.231 34.615 0.00 0.00 39.08 1.98
2171 2252 7.323420 CAAGACAGTAATGGATGTTCTGTAGA 58.677 38.462 0.00 0.00 39.08 2.59
2172 2253 6.536582 CCAAGACAGTAATGGATGTTCTGTAG 59.463 42.308 0.00 0.00 39.08 2.74
2173 2254 6.212589 TCCAAGACAGTAATGGATGTTCTGTA 59.787 38.462 3.14 0.00 38.30 2.74
2174 2255 5.013079 TCCAAGACAGTAATGGATGTTCTGT 59.987 40.000 3.14 0.00 38.30 3.41
2175 2256 5.491070 TCCAAGACAGTAATGGATGTTCTG 58.509 41.667 3.14 0.00 38.30 3.02
2176 2257 5.249393 ACTCCAAGACAGTAATGGATGTTCT 59.751 40.000 7.15 0.00 42.12 3.01
2178 2259 5.221925 ACACTCCAAGACAGTAATGGATGTT 60.222 40.000 7.15 0.00 42.12 2.71
2180 2261 4.633126 CACACTCCAAGACAGTAATGGATG 59.367 45.833 7.15 9.61 42.12 3.51
2181 2262 4.532126 TCACACTCCAAGACAGTAATGGAT 59.468 41.667 7.15 0.00 42.12 3.41
2182 2263 3.901222 TCACACTCCAAGACAGTAATGGA 59.099 43.478 6.62 6.62 40.84 3.41
2187 2268 5.808366 AAAGATCACACTCCAAGACAGTA 57.192 39.130 0.00 0.00 0.00 2.74
2188 2269 4.696479 AAAGATCACACTCCAAGACAGT 57.304 40.909 0.00 0.00 0.00 3.55
2189 2270 5.059161 TGAAAAGATCACACTCCAAGACAG 58.941 41.667 0.00 0.00 31.50 3.51
2190 2271 5.034852 TGAAAAGATCACACTCCAAGACA 57.965 39.130 0.00 0.00 31.50 3.41
2193 2274 5.528690 TGTTCTGAAAAGATCACACTCCAAG 59.471 40.000 0.00 0.00 33.47 3.61
2194 2275 5.436175 TGTTCTGAAAAGATCACACTCCAA 58.564 37.500 0.00 0.00 33.47 3.53
2195 2276 5.034852 TGTTCTGAAAAGATCACACTCCA 57.965 39.130 0.00 0.00 33.47 3.86
2196 2277 5.123027 GGATGTTCTGAAAAGATCACACTCC 59.877 44.000 0.00 0.00 33.47 3.85
2197 2278 5.702670 TGGATGTTCTGAAAAGATCACACTC 59.297 40.000 0.00 0.00 33.47 3.51
2203 2284 6.536582 TCTCGAATGGATGTTCTGAAAAGATC 59.463 38.462 0.00 0.00 0.00 2.75
2204 2285 6.409704 TCTCGAATGGATGTTCTGAAAAGAT 58.590 36.000 0.00 0.00 0.00 2.40
2205 2286 5.793817 TCTCGAATGGATGTTCTGAAAAGA 58.206 37.500 0.00 0.00 0.00 2.52
2206 2287 6.674694 ATCTCGAATGGATGTTCTGAAAAG 57.325 37.500 0.00 0.00 0.00 2.27
2207 2288 6.127925 CCAATCTCGAATGGATGTTCTGAAAA 60.128 38.462 5.81 0.00 39.12 2.29
2208 2289 5.355071 CCAATCTCGAATGGATGTTCTGAAA 59.645 40.000 5.81 0.00 39.12 2.69
2209 2290 4.877823 CCAATCTCGAATGGATGTTCTGAA 59.122 41.667 5.81 0.00 39.12 3.02
2210 2291 4.445453 CCAATCTCGAATGGATGTTCTGA 58.555 43.478 5.81 0.00 39.12 3.27
2211 2292 3.003068 GCCAATCTCGAATGGATGTTCTG 59.997 47.826 14.01 0.00 39.12 3.02
2212 2293 3.209410 GCCAATCTCGAATGGATGTTCT 58.791 45.455 14.01 0.00 39.12 3.01
2213 2294 2.291741 GGCCAATCTCGAATGGATGTTC 59.708 50.000 14.01 0.00 39.12 3.18
2214 2295 2.301346 GGCCAATCTCGAATGGATGTT 58.699 47.619 14.01 0.00 39.12 2.71
2215 2296 1.477558 GGGCCAATCTCGAATGGATGT 60.478 52.381 4.39 0.00 39.12 3.06
2216 2297 1.242076 GGGCCAATCTCGAATGGATG 58.758 55.000 4.39 0.00 39.12 3.51
2217 2298 0.111253 GGGGCCAATCTCGAATGGAT 59.889 55.000 4.39 0.00 39.12 3.41
2218 2299 1.278302 TGGGGCCAATCTCGAATGGA 61.278 55.000 4.39 0.00 39.12 3.41
2219 2300 1.103398 GTGGGGCCAATCTCGAATGG 61.103 60.000 4.39 7.10 39.80 3.16
2220 2301 0.394216 TGTGGGGCCAATCTCGAATG 60.394 55.000 4.39 0.00 0.00 2.67
2221 2302 0.552848 ATGTGGGGCCAATCTCGAAT 59.447 50.000 4.39 0.00 0.00 3.34
2222 2303 0.331278 AATGTGGGGCCAATCTCGAA 59.669 50.000 4.39 0.00 0.00 3.71
2223 2304 0.331278 AAATGTGGGGCCAATCTCGA 59.669 50.000 4.39 0.00 0.00 4.04
2224 2305 0.740737 GAAATGTGGGGCCAATCTCG 59.259 55.000 4.39 0.00 0.00 4.04
2225 2306 1.753073 CTGAAATGTGGGGCCAATCTC 59.247 52.381 4.39 0.00 0.00 2.75
2226 2307 1.856629 CTGAAATGTGGGGCCAATCT 58.143 50.000 4.39 0.00 0.00 2.40
2227 2308 0.176449 GCTGAAATGTGGGGCCAATC 59.824 55.000 4.39 0.00 0.00 2.67
2228 2309 1.266867 GGCTGAAATGTGGGGCCAAT 61.267 55.000 4.39 0.00 42.08 3.16
2229 2310 1.912763 GGCTGAAATGTGGGGCCAA 60.913 57.895 4.39 0.00 42.08 4.52
2230 2311 2.283821 GGCTGAAATGTGGGGCCA 60.284 61.111 4.39 0.00 42.08 5.36
2231 2312 3.076916 GGGCTGAAATGTGGGGCC 61.077 66.667 0.00 0.00 41.80 5.80
2232 2313 2.037847 AGGGCTGAAATGTGGGGC 59.962 61.111 0.00 0.00 0.00 5.80
2233 2314 0.251742 TTCAGGGCTGAAATGTGGGG 60.252 55.000 0.00 0.00 45.56 4.96
2234 2315 3.362040 TTCAGGGCTGAAATGTGGG 57.638 52.632 0.00 0.00 45.56 4.61
2241 2322 2.142220 ACGGAGTTTCAGGGCTGAA 58.858 52.632 0.00 0.00 46.72 3.02
2242 2323 3.885814 ACGGAGTTTCAGGGCTGA 58.114 55.556 0.00 0.00 37.78 4.26
2386 2467 0.736053 AAGCTCTCTCGGATGTCGAC 59.264 55.000 9.11 9.11 43.74 4.20
2446 2543 7.009723 GTCCATCGTGTGTGTAAACAAAATTTT 59.990 33.333 0.00 0.00 0.00 1.82
2449 2546 5.516090 GTCCATCGTGTGTGTAAACAAAAT 58.484 37.500 0.00 0.00 0.00 1.82
2461 2558 2.509336 GGAGGCGTCCATCGTGTG 60.509 66.667 20.47 0.00 43.31 3.82
2482 2579 0.548510 GCCCAAGATAGGAAGCCACT 59.451 55.000 0.00 0.00 0.00 4.00
2558 2655 0.392998 AGCGTCCCCTAACAGCAATG 60.393 55.000 0.00 0.00 0.00 2.82
2610 2708 2.372264 CAGGACTTATGCAGCATTGGT 58.628 47.619 14.58 12.56 0.00 3.67
2708 2806 4.357313 TTTGGGTAGTACAGATAGGGGT 57.643 45.455 2.06 0.00 0.00 4.95
2722 2820 8.808092 CAAGGACAATAAAGGTAATTTTGGGTA 58.192 33.333 0.00 0.00 32.01 3.69
2730 2828 7.995488 CCAGATCTCAAGGACAATAAAGGTAAT 59.005 37.037 0.00 0.00 0.00 1.89
2746 2844 1.338105 CGGTTGTCAGCCAGATCTCAA 60.338 52.381 6.53 0.00 0.00 3.02
2770 2868 1.299773 GATGAGGAGAAGCCGCGAG 60.300 63.158 8.23 0.00 43.43 5.03
2831 2929 0.528901 ACTTACACGTTGTGCGCTGA 60.529 50.000 9.73 0.00 46.11 4.26
2834 2932 1.154908 CGACTTACACGTTGTGCGC 60.155 57.895 0.00 0.00 46.11 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.