>input_sequence_66989
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--------------------------------------------------------ATGGCCCGCACGAAGCAGACGGCG
CGCAAGTCGACGGGCGGCAAGGCGCCGCGGAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACTGGCGG
CGTGAAGAAGCCGCACCGGTTCCGCCCGGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGC
TCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGAGCTCC
GCCGTGTCGGCGCTCCAGGAGGCCTCCGAGGCGTACCTGGTGGGCCTGTTCGAGGACACCAACCTCTGCGCCATCCACGC
CAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGGGAGCGCGCCTAGGCCTCTCTGCCTC
CGCGTCACGCCTGCCGCCGGTTTTCCTTCTCGGTTGACCCCGCCGAGGGATTTGTTCTGCTCTGTTAGTCTAGTCTAGTC
GTGCTTCGAGTTGTTATTAGGATTTGTTCCGTCCTGTCA------------GTCTGGTGATGTTGATTACCGGCTCGAAA
ATTGCAATGGAGGTGATGC------AATTCATTTTAATTTCGGAGTTCACGTTGATTGCCCATAGTATTTTCTTTGATTG
GATGTTTACATTTGGTGAGTGATCTCGA-----CCTAGGACTGATTTCTGGGCTGGAGTTTTGCTGGCCGTGCTTGCTGC
TTTCAGATTGCTCTTGCGCGTCAGACACTAGCTGCAGAGATTGCAATAGTTTTTTTTTGTACATTTTGACTTTGA-TCTT
TTCAGTACCATCCATTCGACCAAACAAGGGCACGTCAGGTGTTCCATTACAAGCAAAA----------------------
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>chr7A_1_TraesCS7A01G142300
TTTGAAAAGGTTGGATATTTATCTAAATTGAAACTATAAATTTAATCATTGTTAAATCTGTTTTAAAAGGTTAGGGTCAT
TTTATTAATTCATAAAGTGTTGGGTAATTTATGAGAAATAGTTAGGGAATATTCTCAACCCAGCCTACATTTTTCTTTTA
TTATTTGAAAATTTAATAATTTGACTTGCATTTGAATATGAATTCGAGTTCGGTTTGGATCAGGATGAAGTTTACAAAAT
TAATGATGATCACAAGGCACCATTCATGTGTAGTTACTGTAGCTTAACTACTCGGGCGTTACAGTTTTGCCGCGGAAACA
ATGCGGCCAGCTCCAAATGCACGGGCTCCGCCTCAGTTTTGGGGGGTTGGGGACCGAGGGTGTCAGAGCCCCACGTGACG
GGAAAACGGACACCTAGACTAGTCCGCGGACAAATACGGGACCGCTCGGTCCGGATGGGCGCAGGAGGTTTGAGGGTCCG
CGTTGGAGATGCCTAAGATTAAATGCTAAAAACAATAATGCACCAACAATCATTAGCACTCCATTGATCAATTTT----G
TAATAACAACTCCTACACAAGCGATTTTCAGTAAGTGGTTTTCTTCATCGGGGCACATACAAGATGGTACAAAACATGAG
TGAAATTCAGTTGCGAATCAGCAACATACAGTGCTAGGGAAGCCAAAATGCTAGTACTGCCACGGATCACGATCCGTGGC
CAA-CCCGCACAATCGCATCTGCACCGTCCAT------CCACCCCTGATCCAACGTCTCACCCAGCCCCGCGCGACCC-T
CCCTTCGTAGCGCCTTCATCCCTCCCAAACCCAAAAATTTCCGCTCCAAATCTCCCACCCGCGCGCGCCAT-CCCCAAAT
TCCCACCCCTGCTACTTAAACTCCCCGCCGTTCCCCACGAACCCTCACAACTCAGCCAGCCACACCGCCGCCCCTCTCCC
ACCCTCCCAAGAATCCGCCACCGCAGTCCCCCGGCGACCCACGCGCG---GCACCGATGGCCCGCACGAAGCAGACGGCG
CGCAAGTCGACGGGCGGCAAGGCGCCGCGGAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACTGGCGG
CGTGAAGAAGCCGCACCGGTTCCGCCCGGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGC
TCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGAGCTCC
GCCGTGTCGGCGCTCCAGGAGGCCTCCGAGGCGTACCTGGTGGGCCTGTTCGAGGACACCAACCTCTGCGCCATCCACGC
CAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGGGAGCGCGCCTAGGCCTCTCTGCCTC
CGCGTCACGCCTGCCGCCGGTTTTCCTTCTCGGTTGACCCCGCCGAGGGATTTGTTCTGCTCTGTTAGTCTAGTCTAGTC
GTGCTTCGAGTTGTTATTAGGATTTGTTCCGTCCTGTCA------------GTCTGGTGATGTTGATTACCGGCTCGAAA
ATTGCAATGGAGGTGATGC------AATTCATTTTAATTTCGGAGTTCACGTTGATTGCCCATAGTATTTTCTTTGATTG
GATGTTTACATTTGGTGAGTGATCTCGA-----CCTAGGACTGATTTCTGGGCTGGAGTTTTGCTGGCCGTGCTTGCTGC
TTTCAGATTGCTCTTGCGCGTCAGACACTAGCTGCAGAGATTGCAATAGTTTTTTTTTGTACATTTTGACTTTGA-TCTT
TTCAGTACCATCCATTCGACCAAACAAGGGCACGTCAGGTGTTCCATTACAAGCAAAACTAAACAAAATTCGACCTGAAC
TTACTTCAAGGTCATATTCCATATTGTTGTGTGTGTTGCTTACGAGGATTCATTGACAGGGTTGATAATTTGGTTTGATC
GACGCTG-------------TGCCTGACTAAACTTGTTGTAATCAGCCTATGT-GCTACGACTGGCAAAGTTTGAAAAGG
TTGAAATGCGATGAG-----TAGGAGTCACTCATCACTGCAGATGCC------------------TCGGTGGCAATGACA
TGGATTCTGTCCTAGCCCACTAA--TTCTTGTGGTTGCCGCAGGCT-GTCGCACTTGCAAGGTTGCTGTTCACAATCTCG
GTGGTACTGTATCTACAGAACATCCATTACTGTCTTGGAGTGTGATCTTTTCAGAACATCCATTCGAGATTGGCCCCACA
TTTCAGCCCTGAAACTCCGTCACCGTATCTGCAGCAAGCCTTGGTCCCATACTTCAGCCCTGAAATCATCACCCAACCAG
TTTTTAGTAGTACTTGACACTTGTAATTTCAGATACGGCTATGAACCAAACAAACTCATGTAGAAAGT------------
----CGACATCCGAGAGAGCTTGCCATGAGCTTCTCGATGCCTGAACAGCTTGAGCATAACAAAAATTTTGTTTACACAC
ACGATGGACGCCTCCGGCAGTGGCTTCCTATCTTGGGCCAAGCTGTAGTTCAGCAGTTTATTGTAGTAGACAACCATGCC
ATACTCATCCAGATCATTGCTGTTAG-GGGACGCTCCACGAGGAAGGCCGGTTAGCATCCGGCGAGCACCAATGCTGCAT
AAGTCCTGCAAGTAGTTGAGCAGGTGCCATACATGATGGAGTTTGCCAAATTCGTCGATTATTTTGATCATTTTAAATTA
TACTAACCCCTATCTGTACTACCCAAAATTACCTTTATTGTCCTTGAGATCTGGCTGACAACCGGTCCTCGCGGCTTCTC
CTCATCGGGCTGGCCCAATATGATCACACTAGTGCAGGTCGCTCACGTTCAGCGCACAACGTGTAAGTCGGGCCG
>chr7D_536
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-------------------------------------------------------GCACTCCATTGATAAACTTTTATAG
TAATAACAACTCTTACACAAGCGATTTTCAGTAAGTTGTTTTCTTCATCAGGGCACATACAAGATGGTACAAAT-ATGAA
TGAAATTCAGTTGCCAATCAGCAACATACAGTGCGAGCGAAGCCAAAATGCTAGTACTCCCACGGATCACGATCCGTGGC
CAA-CCCGCACAAGCGCATCTGCACCGTCAGT------CCATCCCTGATCTAACGTCTCACCCAACCCCGCGCGCCCC-T
CCCTCCGTGGCGCCTTCACCCCTCCCAAACCCAAAAATTTCCGCTCC--ATCTCCCACCCGCGCGCGCCATGCCCCAAAT
TCCCACCCCTGCTACTTAAACCCTCCGCCGCTCCCCACGAATCCTCACAACTCAGCCAGCCGCACCGCCCCCGCT-----
-CCCTCCCAAGAATCCCCCACCGCAGTCCCCCGGCAGCCCCCGCGCG---GCTCCGATGGCCCGCACGAAGCAGACGGCG
CGCAAGTCGACGGGCGGCAAGGCGCCGCGGAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGG
CGTGAAGAAGCCGCACCGGTTCCGCCCGGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGC
TCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGAGCTCC
GCCGTGTCGGCGCTGCAGGAGGCCGCCGAGGCGTACCTGGTGGGGCTGTTCGAGGACACCAACCTCTGCGCCATCCACGC
CAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCTCGCCGCATCCGTGGGGAGCGCGCCTAGGCCTCTCTGCCTC
TGCGTCACGCCTGCCGCCGCGGTTCCTTCCTGGTTGATCCCGCCGACGGATTTGTTCTGCCCTGTTAGTCTAGTCTCGTC
GTGCTTCGAGTTGTCATTAGAATTTGTTCTGTTCTATTAGTCTCACGC------------TGTTGATTACCCGCTCGAAA
ATTGCAACGGAGGTGATGC------AATTCATCTTAATTTCCGAGTTCATGTTGATTGCCCATAGTATTTTCTTTGATTG
GATGTTTATATTTGGTGAGTGATCTCGA-----CCTGGGACTGATTTCTGGGCTGGAGTTTTGCTGGCCGTGCTTGCTGC
TTTCAGATGGCTCTTGCGCGTCAGACATTTGCTGCAGAGATTGCAATC---TTTTTTTGTACATTTTGGCG-TGA-TCTT
TTCACTACCATCCATTCGGCCAAACAAGGACACGTCAGGTGGTCCATTATAAGCAAAACCAAACAAAATTCGACCTGAAC
TTATTTCAAGGTCATATTCCATATTGTTGTGCTT-TTCCTTATGATGATTCATCGACAGGGTTCATAATTTGGTTTAATC
AATGCTG-------------TGCCTGACT---------------------------------------------------
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>chr2A_689
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----------------------------------------------------AGTGCTACCACGGATCATGATCCGTGGC
CAGCCCCACACAAACACATCTCCACCGTCTCCCATTCCCCACGCCCGATCCAACGGCTCAGCCGCGACGCGCTCCTCGAT
CCCTTCATGGCGCCATTATCCGTCCAAAGCCCGAAATTTTCGCTCCCATTTTTCAACC---CGCGCGCCAACCTCCAAAT
TCCCATCCCTACTTAGCCATCTACCTGCACCGCAGATCATCAGAAC-------------CCACACCGCCG------TCCC
AATCTCCCACCAAGAAACCACCGCACTCCCGCCCAGGCCGCCGACCTCCAGCTCCGATGGCCCGCACGAAGCAGACGGCG
CGCAAGTCCACCGGCGGCAAGGCGCCGCGAAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGG
CGTGAAGAAGCCGCACCGTTTCCGCCCTGGAACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGC
TCATCCGCAAGCTCCCCTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCC
GCCGTGTCCGCGCTGCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGC
CAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGGATCCGAGGGGAGCGCGCCTAGCCTCCGAATGCTT
---------CCTGCCGCCATGGTCCCTTCTTGGTTGATCCTGAGGGGATTTA----------------TTTCGTCCACCT
GTGCGTCGAGTTGTTTAG------------GTTCTACTAGTCGATGATATGGTCCTGTGATGTTGATTACCTATTGGGAA
ATTGCAATGGATGTGAATGTGATATATTTTATCCTCATTTCAGAGATCTGGTGAATTGAA---------TTCTCTGCTTG
GATGC-TATGTCTGGTGAATGATTCTGTACCATCCTAGGAATGGTTCTGTTTGTGTATCAGAAATTTGCAATC-------
-----------------------GACAATTACTGTGGAGATTGCAGAATTTTGTACATGTTTGTGTGTTGTTTAATTCTT
TTGAGCACCGGCTATTTTGTCTAACAGTCTGTTAACTGACAGAATGCATAACTT--------------------------
--------------------------------------------AGTGTTAACTGACAGAATGCATAATTTAGTGTTAAC
TGACAGAATGCATAATTTGATGTCAGATTAAACTTTAGATATGATCCCTATGAGGCTACTTCTGCCAAAGTTTTGATTGA
TCGGAAGGTGGATGTGA--GTACGAGCCACTCATCACCGCAGTTGCTATGATATTGTTTGTAGTTATTG------TGGCA
TAGATCCCATCCTTGCTCACGTA--GTTCTGCGGGTCTCGGAGGACCGTCACAATTGCAAAGTTGCTGTTTACAATCTTG
CTGGTGCCACACTGCACATATGGCCATATGGGTAAAAAAGTTT-------------------------------------
-----------TGGCTCCGTTACCGTATCCACATCAAGCCTTGGTCCCATACTTCAGCCCTGAAATCACCACCTGACCAG
TTTC-AGTAGTAATTGACACTTGTAATTTCAGATAGGGTTATGAACCAAGCCAATTGATCTACTCACTCGATGGCAGACA
GGATTTGGC------AGAGCTTACCATGAGCTTCTGGGTGCCTGAACAGCTCGAGCATGACGGAATATTTGTTT------
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>chr7D_1957
G-------------------------------------------------------------------------------
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-----------------------------------------------------------------------------ATC
GTTGCTG-------------TGCCTGACTAAACTTGTTGTAATCAGCCTATGT-GCTACGACTGGCAAAGTTTGAAAAGG
TTGAAACGCGCTGAGGAGTGTACGAGCCACTCATCACTGCAGATGCTATGGCATTGTTTGCAGCTTCGGTGGCAATGACA
TGGATTCAATCCCAGCTCACTGTAGTTCTAGTGGTTGCCGCAGGCT-GCGGCACTTGCAAGGTTGCCGTTCACAATCTTG
CTGGTACCACAGTACACGTCTGGGTT---------AAAATTGT-------------------------------------
-----------AAGCTCCGTCACTGTATGTGCAGCAAATCTTGGTCCCATTCTTCAGCCCTGAAATCATCACCCAGCCAG
TTTTTAGTAGTACTTGACACTTGTAATTAAAGATACGGCTATGAACCAAACAAACTCATGTAGAAATTGGATGTCACAAG
GGACCGACATCCGAGAGAGCTTGCCATGAGCTTTTCAATGCCTGAACAGCTCAAGCATAACAGAATTTTTGTTGACATAC
ACGATGGACGCCTCCGGCCGTGGCTTCCTATCTTGGGCCAAGCTGTAGTTCAGCAGTTTATTGTAGTAGACAACCATGCC
ATACTCATCCAGATAATTGCTGTTAGGGGGACGCTCCACGAGGAAGGCCGGTTAGCATCCGGTGAGCCCCAATGCTGCAT
AAGTCCTGCAAGTAGTTGAGCAGGTGACATACATGATGGAGTTTGCCAAATTTGTCGATTATTTTGATCATTTCAAATTA
TACTATCCCCTATCTGTACAACCCAAAGTTACCTTTATTGTCCCTGAGATCTGGCTGACAACCGGTCTTCGCGGCTTCTC
CTGATCGGGCTGGCCCAATATGATCACACTAGTGCAGGTCGCTCACGTCCAACGCACAACGTGTAAGTCAGGCCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--S--------
------------S-----------------------S------------S-----------------------SS----S
--------------S-------------------S--S--------------------S---------------------
-------------S---------------SS---------------------------------S---------S-----
--------S---------------------------------------S-------------------------------
------------------------------S----------S------------------------------S--S----
----------------S-------------------S---S-----------S---------------------------
--------------------------------------------------------------------------S-----
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--------------S---------S-------------------S-----------------------------------
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S------------------SSS--------S------S----------------------S-------------------
--------------------S--------S--S--S-S----------------SS---------------S--------
--------------------------------S--------S-------S------------------------------
--------S-----------------------------------------------------------------------
--------S------------------S-S------------------S-------------------S-----------
------------------S----------S-----------S-------S---------S--------------------
---S---------------------------SS-S--S----S--------------------S------------S---
--S-----------------------------------------------------------------------------
------S---S-----------S---S-------------------S---------------------------------
-------SS-------S----S--------------------------------------------------------S-
S------SSS-SSSSSS-S-SSS----SSSS--SSSSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--S------------------------------------------------------------------
------------------------------------------------------------------S-------------
---------------------------------------------------S----------S--S-----------S--
------------------S-------------------------------------------------------------
--------------S-----------------------------------------------S----S------------
--------------------------S-------------------------S--------------------S------
-----S-------------S-------S---------------S-----------------------S------------
--S---------------------------------------------S--S-----------------S-----
>forward_310
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--------------------------------------------------CTCGGGCGTTACAGTTTTGC----------
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>reverse_2298
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---------------------------------------------------------ATCCATTCGAGATTGGCCCC---
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