Multiple sequence alignment - TraesCS7A01G056400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G056400 chr7A 100.000 3233 0 0 1 3233 27108157 27104925 0.000000e+00 5971
1 TraesCS7A01G056400 chr7D 90.836 1484 103 18 1372 2832 26732308 26730835 0.000000e+00 1956
2 TraesCS7A01G056400 chr7D 88.251 749 73 11 609 1349 26733036 26732295 0.000000e+00 881
3 TraesCS7A01G056400 chr7D 81.915 188 21 6 1 178 26733686 26733502 2.600000e-31 147
4 TraesCS7A01G056400 chr4A 90.117 1113 101 5 1394 2502 710773311 710772204 0.000000e+00 1437
5 TraesCS7A01G056400 chr4A 90.467 1007 75 10 265 1268 710774370 710773382 0.000000e+00 1308
6 TraesCS7A01G056400 chr4A 87.988 333 34 6 2822 3153 609091961 609092288 3.910000e-104 388
7 TraesCS7A01G056400 chr4A 92.308 182 14 0 1 182 710774550 710774369 3.200000e-65 259
8 TraesCS7A01G056400 chr4A 87.500 208 20 2 535 742 710778955 710778754 5.390000e-58 235
9 TraesCS7A01G056400 chr4A 88.636 176 17 3 7 182 710779327 710779155 9.090000e-51 211
10 TraesCS7A01G056400 chr4A 82.081 173 21 5 11 176 710781719 710781550 4.350000e-29 139
11 TraesCS7A01G056400 chr3D 93.939 330 18 2 2823 3152 133104460 133104133 6.230000e-137 497
12 TraesCS7A01G056400 chr3D 88.131 337 32 8 2816 3150 462243793 462243463 8.410000e-106 394
13 TraesCS7A01G056400 chr4D 89.394 330 26 7 2825 3152 9067738 9068060 1.080000e-109 407
14 TraesCS7A01G056400 chr4D 88.685 327 34 3 2824 3150 439873912 439873589 2.340000e-106 396
15 TraesCS7A01G056400 chr4D 93.000 100 6 1 176 274 488960967 488960868 9.350000e-31 145
16 TraesCS7A01G056400 chr6D 88.589 333 30 8 2827 3157 26670762 26670436 6.500000e-107 398
17 TraesCS7A01G056400 chr6D 87.202 336 36 7 2816 3150 363909724 363909395 3.050000e-100 375
18 TraesCS7A01G056400 chr2A 88.166 338 33 6 2816 3150 114626110 114625777 2.340000e-106 396
19 TraesCS7A01G056400 chr6A 87.202 336 36 7 2816 3150 505027501 505027172 3.050000e-100 375
20 TraesCS7A01G056400 chr3B 94.505 91 5 0 181 271 803005864 803005954 1.210000e-29 141
21 TraesCS7A01G056400 chr3B 91.919 99 6 2 181 278 469635130 469635033 1.560000e-28 137
22 TraesCS7A01G056400 chr6B 92.784 97 6 1 181 277 561850790 561850695 4.350000e-29 139
23 TraesCS7A01G056400 chr5B 93.548 93 6 0 178 270 546992657 546992565 4.350000e-29 139
24 TraesCS7A01G056400 chr5B 91.753 97 8 0 174 270 612333418 612333514 5.630000e-28 135
25 TraesCS7A01G056400 chr2B 89.720 107 9 2 179 284 129661945 129662050 5.630000e-28 135
26 TraesCS7A01G056400 chr2B 89.623 106 9 2 173 277 751263668 751263564 2.020000e-27 134
27 TraesCS7A01G056400 chr4B 89.720 107 8 3 162 266 595701700 595701805 2.020000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G056400 chr7A 27104925 27108157 3232 True 5971.000000 5971 100.000000 1 3233 1 chr7A.!!$R1 3232
1 TraesCS7A01G056400 chr7D 26730835 26733686 2851 True 994.666667 1956 87.000667 1 2832 3 chr7D.!!$R1 2831
2 TraesCS7A01G056400 chr4A 710772204 710774550 2346 True 1001.333333 1437 90.964000 1 2502 3 chr4A.!!$R1 2501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 208 0.035739 GCTACTCCCACCGTTCCAAA 59.964 55.0 0.0 0.0 0.0 3.28 F
759 903 0.598065 GTGTTGCTCCCCATGTTCAC 59.402 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1163 1309 0.171007 CGCAGCAATACTTGGGTTGG 59.829 55.0 0.0 0.0 0.0 3.77 R
2428 2588 0.247460 GGCAGGAAATCAAGGGCAAC 59.753 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.358402 GCATGTCAACGCCAACACA 59.642 52.632 0.00 0.00 0.00 3.72
151 162 6.730447 TCCAAATATTCCTCAAATCACCTGA 58.270 36.000 0.00 0.00 0.00 3.86
184 195 9.547753 TTTAAATATCCAGACTGATTGCTACTC 57.452 33.333 3.32 0.00 0.00 2.59
185 196 5.736951 ATATCCAGACTGATTGCTACTCC 57.263 43.478 3.32 0.00 0.00 3.85
186 197 2.111384 TCCAGACTGATTGCTACTCCC 58.889 52.381 3.32 0.00 0.00 4.30
187 198 1.833630 CCAGACTGATTGCTACTCCCA 59.166 52.381 3.32 0.00 0.00 4.37
188 199 2.419297 CCAGACTGATTGCTACTCCCAC 60.419 54.545 3.32 0.00 0.00 4.61
189 200 1.834263 AGACTGATTGCTACTCCCACC 59.166 52.381 0.00 0.00 0.00 4.61
190 201 0.537188 ACTGATTGCTACTCCCACCG 59.463 55.000 0.00 0.00 0.00 4.94
191 202 0.537188 CTGATTGCTACTCCCACCGT 59.463 55.000 0.00 0.00 0.00 4.83
192 203 0.981183 TGATTGCTACTCCCACCGTT 59.019 50.000 0.00 0.00 0.00 4.44
193 204 1.066430 TGATTGCTACTCCCACCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
194 205 0.252197 ATTGCTACTCCCACCGTTCC 59.748 55.000 0.00 0.00 0.00 3.62
195 206 1.122632 TTGCTACTCCCACCGTTCCA 61.123 55.000 0.00 0.00 0.00 3.53
196 207 1.122632 TGCTACTCCCACCGTTCCAA 61.123 55.000 0.00 0.00 0.00 3.53
197 208 0.035739 GCTACTCCCACCGTTCCAAA 59.964 55.000 0.00 0.00 0.00 3.28
198 209 1.543871 GCTACTCCCACCGTTCCAAAA 60.544 52.381 0.00 0.00 0.00 2.44
199 210 2.878526 GCTACTCCCACCGTTCCAAAAT 60.879 50.000 0.00 0.00 0.00 1.82
200 211 3.620472 GCTACTCCCACCGTTCCAAAATA 60.620 47.826 0.00 0.00 0.00 1.40
201 212 3.067684 ACTCCCACCGTTCCAAAATAG 57.932 47.619 0.00 0.00 0.00 1.73
202 213 2.640826 ACTCCCACCGTTCCAAAATAGA 59.359 45.455 0.00 0.00 0.00 1.98
203 214 3.265995 ACTCCCACCGTTCCAAAATAGAT 59.734 43.478 0.00 0.00 0.00 1.98
204 215 3.616219 TCCCACCGTTCCAAAATAGATG 58.384 45.455 0.00 0.00 0.00 2.90
205 216 3.264706 TCCCACCGTTCCAAAATAGATGA 59.735 43.478 0.00 0.00 0.00 2.92
206 217 3.377172 CCCACCGTTCCAAAATAGATGAC 59.623 47.826 0.00 0.00 0.00 3.06
207 218 3.377172 CCACCGTTCCAAAATAGATGACC 59.623 47.826 0.00 0.00 0.00 4.02
208 219 3.377172 CACCGTTCCAAAATAGATGACCC 59.623 47.826 0.00 0.00 0.00 4.46
209 220 3.009695 ACCGTTCCAAAATAGATGACCCA 59.990 43.478 0.00 0.00 0.00 4.51
210 221 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
211 222 4.644685 CCGTTCCAAAATAGATGACCCAAT 59.355 41.667 0.00 0.00 0.00 3.16
212 223 5.127031 CCGTTCCAAAATAGATGACCCAATT 59.873 40.000 0.00 0.00 0.00 2.32
213 224 6.350949 CCGTTCCAAAATAGATGACCCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
214 225 7.096551 CGTTCCAAAATAGATGACCCAATTTT 58.903 34.615 0.00 0.00 33.07 1.82
215 226 7.063308 CGTTCCAAAATAGATGACCCAATTTTG 59.937 37.037 10.80 10.80 43.77 2.44
216 227 7.552050 TCCAAAATAGATGACCCAATTTTGT 57.448 32.000 14.67 0.00 43.14 2.83
217 228 8.657387 TCCAAAATAGATGACCCAATTTTGTA 57.343 30.769 14.67 1.18 43.14 2.41
218 229 9.265862 TCCAAAATAGATGACCCAATTTTGTAT 57.734 29.630 14.67 0.00 43.14 2.29
219 230 9.889128 CCAAAATAGATGACCCAATTTTGTATT 57.111 29.630 14.67 0.00 43.14 1.89
252 263 9.778741 AGTACAAAGTTGAGTCATCTATTTTGA 57.221 29.630 15.99 3.46 38.91 2.69
255 266 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
256 267 8.895845 CAAAGTTGAGTCATCTATTTTGAAACG 58.104 33.333 4.14 0.00 38.91 3.60
257 268 7.962964 AGTTGAGTCATCTATTTTGAAACGA 57.037 32.000 1.70 0.00 0.00 3.85
258 269 8.378172 AGTTGAGTCATCTATTTTGAAACGAA 57.622 30.769 1.70 0.00 0.00 3.85
259 270 8.499162 AGTTGAGTCATCTATTTTGAAACGAAG 58.501 33.333 1.70 0.00 0.00 3.79
260 271 7.364522 TGAGTCATCTATTTTGAAACGAAGG 57.635 36.000 0.00 0.00 0.00 3.46
261 272 6.371548 TGAGTCATCTATTTTGAAACGAAGGG 59.628 38.462 0.00 0.00 0.00 3.95
277 288 6.145338 ACGAAGGGAGTAGTTACATACATG 57.855 41.667 0.00 0.00 0.00 3.21
315 334 3.663995 TTCATTGCACATCAAAGGGTG 57.336 42.857 0.00 0.00 38.34 4.61
369 392 1.145377 GATATTGTCCGGCGTGGGT 59.855 57.895 6.01 0.00 38.76 4.51
389 412 2.996621 GTTGTTTGTGATCTCCGAGGAG 59.003 50.000 12.78 12.78 43.21 3.69
405 428 0.944386 GGAGCGCTTTTGTGAAGTCA 59.056 50.000 13.26 0.00 0.00 3.41
429 452 5.752098 GTGATTAGCACAGCACAATTTTC 57.248 39.130 0.00 0.00 46.91 2.29
431 454 5.691305 GTGATTAGCACAGCACAATTTTCAA 59.309 36.000 0.00 0.00 46.91 2.69
445 468 1.464734 TTTCAACTTGTGCGACCCAA 58.535 45.000 0.00 0.00 0.00 4.12
463 486 2.624838 CCAAGTTCACCTGCAAGACAAT 59.375 45.455 0.00 0.00 34.07 2.71
474 497 4.023193 CCTGCAAGACAATTTTAAGACCGT 60.023 41.667 0.00 0.00 34.07 4.83
619 762 6.019779 AGCAATAATTAAAGCACAACCGAA 57.980 33.333 13.06 0.00 0.00 4.30
644 787 6.883217 AGTCGTTATAGGTCAAGTAGTTCAGA 59.117 38.462 0.00 0.00 0.00 3.27
655 798 7.227910 GGTCAAGTAGTTCAGATAAAACAACCA 59.772 37.037 0.00 0.00 0.00 3.67
735 879 2.483013 GCCTACACACCGCTGAATGATA 60.483 50.000 0.00 0.00 0.00 2.15
759 903 0.598065 GTGTTGCTCCCCATGTTCAC 59.402 55.000 0.00 0.00 0.00 3.18
816 962 6.973642 TGACCTCCAAATATTCCTCAAATCT 58.026 36.000 0.00 0.00 0.00 2.40
817 963 6.830324 TGACCTCCAAATATTCCTCAAATCTG 59.170 38.462 0.00 0.00 0.00 2.90
821 967 9.359653 CCTCCAAATATTCCTCAAATCTGTTAT 57.640 33.333 0.00 0.00 0.00 1.89
892 1038 8.461249 ACCTGTACGTGTCTATAAATACATCT 57.539 34.615 0.00 0.00 0.00 2.90
935 1081 2.346766 TCATCTGCCGGCATACATTT 57.653 45.000 32.87 4.41 0.00 2.32
937 1083 2.618241 TCATCTGCCGGCATACATTTTC 59.382 45.455 32.87 0.00 0.00 2.29
966 1112 3.197549 ACATTTGCCACCCATTTGATACC 59.802 43.478 0.00 0.00 0.00 2.73
1004 1150 3.560025 GCCAAGAACTTCAGGAAGATGGA 60.560 47.826 15.51 0.00 40.79 3.41
1080 1226 2.219458 CTCATCACCATGTCATCTGCC 58.781 52.381 0.00 0.00 0.00 4.85
1089 1235 1.353103 GTCATCTGCCGAATTGCCG 59.647 57.895 0.00 0.00 0.00 5.69
1093 1239 1.151777 ATCTGCCGAATTGCCGTACG 61.152 55.000 8.69 8.69 0.00 3.67
1104 1250 1.917273 TGCCGTACGATTTCTACAGC 58.083 50.000 18.76 8.63 0.00 4.40
1110 1256 3.484721 CGTACGATTTCTACAGCTCGTCA 60.485 47.826 10.44 0.00 42.77 4.35
1119 1265 2.169789 CAGCTCGTCATGCCCGAAG 61.170 63.158 8.35 4.93 33.34 3.79
1141 1287 3.428045 GGCCGAGGAAACAATCAAGAATG 60.428 47.826 0.00 0.00 0.00 2.67
1142 1288 3.191371 GCCGAGGAAACAATCAAGAATGT 59.809 43.478 0.00 0.00 0.00 2.71
1163 1309 1.058404 GTCTACAACTTGACCGACGC 58.942 55.000 0.00 0.00 0.00 5.19
1229 1375 4.270084 CGATTGCTTTGTCATGGTACGTAT 59.730 41.667 0.00 0.00 0.00 3.06
1230 1376 5.556382 CGATTGCTTTGTCATGGTACGTATC 60.556 44.000 0.00 0.00 0.00 2.24
1231 1377 4.195225 TGCTTTGTCATGGTACGTATCA 57.805 40.909 11.65 11.65 0.00 2.15
1237 1383 7.148540 GCTTTGTCATGGTACGTATCAAACTTA 60.149 37.037 13.46 4.72 0.00 2.24
1302 1452 9.287373 TCTTATTTTACTTTGGGTTATGAACGT 57.713 29.630 0.00 0.00 0.00 3.99
1379 1535 3.760580 TTTTTGCGGGTGAATTTCCAT 57.239 38.095 0.00 0.00 0.00 3.41
1380 1536 3.760580 TTTTGCGGGTGAATTTCCATT 57.239 38.095 0.00 0.00 0.00 3.16
1381 1537 3.760580 TTTGCGGGTGAATTTCCATTT 57.239 38.095 0.00 0.00 0.00 2.32
1382 1538 4.873746 TTTGCGGGTGAATTTCCATTTA 57.126 36.364 0.00 0.00 0.00 1.40
1383 1539 5.413309 TTTGCGGGTGAATTTCCATTTAT 57.587 34.783 0.00 0.00 0.00 1.40
1475 1633 4.013728 ACAGCTTAATTTGGCCGTTGATA 58.986 39.130 0.00 0.00 0.00 2.15
1479 1637 5.536161 AGCTTAATTTGGCCGTTGATATCAT 59.464 36.000 6.17 0.00 0.00 2.45
1491 1649 5.997746 CCGTTGATATCATTAGGGTTGTGAT 59.002 40.000 6.17 0.00 36.60 3.06
1494 1652 5.316167 TGATATCATTAGGGTTGTGATGCC 58.684 41.667 0.00 0.00 34.62 4.40
1507 1665 1.487976 GTGATGCCTCCATCCTTCTGA 59.512 52.381 1.64 0.00 45.86 3.27
1552 1710 1.186200 GGAAAAGTCAGCCATTCCCC 58.814 55.000 0.00 0.00 36.21 4.81
1554 1712 2.025321 GGAAAAGTCAGCCATTCCCCTA 60.025 50.000 0.00 0.00 36.21 3.53
1674 1832 2.522638 CGTCAGTAAATCCGCCGGC 61.523 63.158 19.07 19.07 0.00 6.13
1727 1885 1.204312 GCAACGTGTCGAAAGCCTC 59.796 57.895 0.00 0.00 0.00 4.70
1857 2015 4.094646 TCCATCGGTGTGGCGCAT 62.095 61.111 10.83 0.00 39.19 4.73
1872 2030 1.675641 GCATTGCTCCGGGTTCACT 60.676 57.895 0.00 0.00 0.00 3.41
1923 2081 3.913573 GACGCTGCATACGCCACG 61.914 66.667 9.00 0.00 40.25 4.94
2013 2171 1.805254 GCCGACAATGCTGAGCAAT 59.195 52.632 12.69 0.00 43.62 3.56
2088 2246 2.029073 CTCACCCGCAACGACACT 59.971 61.111 0.00 0.00 0.00 3.55
2090 2248 4.012895 CACCCGCAACGACACTGC 62.013 66.667 0.00 0.00 36.41 4.40
2103 2261 4.927782 ACTGCGGCGAAGGTGCAA 62.928 61.111 20.91 0.00 38.30 4.08
2114 2272 0.385390 AAGGTGCAAGAAAACGCTGG 59.615 50.000 0.00 0.00 0.00 4.85
2115 2273 1.661509 GGTGCAAGAAAACGCTGGC 60.662 57.895 0.00 0.00 35.33 4.85
2214 2372 0.398318 GGCAGGTCAGGAAGTTCTGT 59.602 55.000 2.25 0.00 36.25 3.41
2215 2373 1.517242 GCAGGTCAGGAAGTTCTGTG 58.483 55.000 2.25 1.35 36.25 3.66
2254 2412 9.974750 GCTAAATTGTTAAGACACACTTAGATC 57.025 33.333 0.00 0.00 41.33 2.75
2269 2427 8.571336 CACACTTAGATCTGGTGATTTTTCTTT 58.429 33.333 26.47 7.71 35.28 2.52
2309 2467 7.625185 GCACTACATTCAAGATTTCTCCTTGTC 60.625 40.741 0.00 0.00 41.18 3.18
2310 2468 5.869753 ACATTCAAGATTTCTCCTTGTCG 57.130 39.130 0.00 0.00 41.18 4.35
2344 2502 7.094933 CCAGTTACTGTGGTATTTTGGTTAGAC 60.095 40.741 11.68 0.00 0.00 2.59
2470 2630 7.392113 TGCCTATTTGGATAAGTTCTTTCGAAA 59.608 33.333 10.71 10.71 38.35 3.46
2477 2637 2.074547 AGTTCTTTCGAAATCCGCGA 57.925 45.000 11.70 1.67 38.37 5.87
2518 2678 5.975988 ATCTTATTTAACTGCTCCCTCCA 57.024 39.130 0.00 0.00 0.00 3.86
2522 2682 1.965414 TTAACTGCTCCCTCCATCCA 58.035 50.000 0.00 0.00 0.00 3.41
2585 2750 9.768662 TTTTAAATATTATGGGACGGAGAGTAC 57.231 33.333 0.00 0.00 0.00 2.73
2610 2775 9.128404 ACGTAGTACATAATCAAGTCTATGGAA 57.872 33.333 0.38 0.00 41.94 3.53
2611 2776 9.613957 CGTAGTACATAATCAAGTCTATGGAAG 57.386 37.037 0.38 0.00 31.06 3.46
2632 2802 8.094548 TGGAAGATTATAGATAAACCATGGACG 58.905 37.037 21.47 0.00 0.00 4.79
2638 2808 2.862674 ATAAACCATGGACGCGCCGT 62.863 55.000 21.47 7.32 45.10 5.68
2662 2832 1.151221 ACCTGCTGTGACATGCCAA 59.849 52.632 0.00 0.00 0.00 4.52
2666 2836 1.207593 GCTGTGACATGCCAACGAC 59.792 57.895 0.00 0.00 0.00 4.34
2667 2837 1.868997 CTGTGACATGCCAACGACC 59.131 57.895 0.00 0.00 0.00 4.79
2714 2884 0.034863 ACGTGGAAGGTGTGGTTTGT 60.035 50.000 0.00 0.00 31.22 2.83
2725 2895 0.318614 GTGGTTTGTGGCGTCAATGG 60.319 55.000 0.00 0.00 0.00 3.16
2726 2896 1.372872 GGTTTGTGGCGTCAATGGC 60.373 57.895 0.00 0.00 0.00 4.40
2763 2938 1.523938 GGTGCTACGGGGATGAAGC 60.524 63.158 0.00 0.00 35.51 3.86
2783 2958 0.033504 GGCAGGAAGTTCTGTCGTGA 59.966 55.000 2.25 0.00 37.12 4.35
2835 3010 8.784043 CCCAAATTACTTTATACTAGATGGTGC 58.216 37.037 0.00 0.00 0.00 5.01
2836 3011 8.784043 CCAAATTACTTTATACTAGATGGTGCC 58.216 37.037 0.00 0.00 0.00 5.01
2837 3012 8.784043 CAAATTACTTTATACTAGATGGTGCCC 58.216 37.037 0.00 0.00 0.00 5.36
2838 3013 4.976540 ACTTTATACTAGATGGTGCCCC 57.023 45.455 0.00 0.00 0.00 5.80
2839 3014 3.323979 ACTTTATACTAGATGGTGCCCCG 59.676 47.826 0.00 0.00 0.00 5.73
2840 3015 1.263356 TATACTAGATGGTGCCCCGC 58.737 55.000 0.00 0.00 0.00 6.13
2841 3016 0.762842 ATACTAGATGGTGCCCCGCA 60.763 55.000 0.00 0.00 35.60 5.69
2856 3031 2.642700 GCACGTTGTTGCGGGAAT 59.357 55.556 0.00 0.00 37.48 3.01
2857 3032 1.870383 GCACGTTGTTGCGGGAATA 59.130 52.632 0.00 0.00 37.48 1.75
2858 3033 0.450184 GCACGTTGTTGCGGGAATAT 59.550 50.000 0.00 0.00 37.48 1.28
2859 3034 1.135517 GCACGTTGTTGCGGGAATATT 60.136 47.619 0.00 0.00 37.48 1.28
2860 3035 2.514902 CACGTTGTTGCGGGAATATTG 58.485 47.619 0.00 0.00 37.48 1.90
2861 3036 2.095466 CACGTTGTTGCGGGAATATTGT 60.095 45.455 0.00 0.00 37.48 2.71
2862 3037 2.095466 ACGTTGTTGCGGGAATATTGTG 60.095 45.455 0.00 0.00 35.98 3.33
2863 3038 2.258755 GTTGTTGCGGGAATATTGTGC 58.741 47.619 0.00 0.00 0.00 4.57
2864 3039 1.539157 TGTTGCGGGAATATTGTGCA 58.461 45.000 0.00 0.00 0.00 4.57
2865 3040 1.889170 TGTTGCGGGAATATTGTGCAA 59.111 42.857 12.20 12.20 42.68 4.08
2866 3041 2.495270 TGTTGCGGGAATATTGTGCAAT 59.505 40.909 16.84 2.83 45.95 3.56
2867 3042 3.696548 TGTTGCGGGAATATTGTGCAATA 59.303 39.130 16.84 13.26 45.95 1.90
2868 3043 4.340666 TGTTGCGGGAATATTGTGCAATAT 59.659 37.500 16.84 10.63 45.95 1.28
2869 3044 5.532779 TGTTGCGGGAATATTGTGCAATATA 59.467 36.000 15.29 8.18 45.95 0.86
2870 3045 6.208402 TGTTGCGGGAATATTGTGCAATATAT 59.792 34.615 15.29 7.99 45.95 0.86
2871 3046 6.832520 TGCGGGAATATTGTGCAATATATT 57.167 33.333 15.29 12.12 41.66 1.28
2872 3047 7.225784 TGCGGGAATATTGTGCAATATATTT 57.774 32.000 15.29 4.09 41.66 1.40
2873 3048 7.312154 TGCGGGAATATTGTGCAATATATTTC 58.688 34.615 15.29 11.55 41.66 2.17
2874 3049 7.040132 TGCGGGAATATTGTGCAATATATTTCA 60.040 33.333 15.29 0.00 41.66 2.69
2875 3050 7.812191 GCGGGAATATTGTGCAATATATTTCAA 59.188 33.333 15.29 5.04 41.66 2.69
2876 3051 9.689976 CGGGAATATTGTGCAATATATTTCAAA 57.310 29.630 15.29 0.00 41.66 2.69
2924 3099 9.967346 TGAGTACTCGGAAAAATAATATGAGAG 57.033 33.333 17.85 0.00 0.00 3.20
2925 3100 8.819643 AGTACTCGGAAAAATAATATGAGAGC 57.180 34.615 0.00 0.00 0.00 4.09
2926 3101 8.643324 AGTACTCGGAAAAATAATATGAGAGCT 58.357 33.333 0.00 0.00 0.00 4.09
2927 3102 9.909644 GTACTCGGAAAAATAATATGAGAGCTA 57.090 33.333 0.00 0.00 0.00 3.32
2929 3104 9.832445 ACTCGGAAAAATAATATGAGAGCTAAA 57.168 29.630 0.00 0.00 0.00 1.85
3022 3197 1.700523 CATGTTTGCATGTTCGGGTG 58.299 50.000 0.00 0.00 45.48 4.61
3023 3198 0.602562 ATGTTTGCATGTTCGGGTGG 59.397 50.000 0.00 0.00 33.37 4.61
3024 3199 0.466372 TGTTTGCATGTTCGGGTGGA 60.466 50.000 0.00 0.00 0.00 4.02
3025 3200 0.039527 GTTTGCATGTTCGGGTGGAC 60.040 55.000 0.00 0.00 0.00 4.02
3026 3201 1.175983 TTTGCATGTTCGGGTGGACC 61.176 55.000 0.00 0.00 0.00 4.46
3027 3202 2.033448 GCATGTTCGGGTGGACCA 59.967 61.111 0.00 0.00 40.22 4.02
3028 3203 1.378514 GCATGTTCGGGTGGACCAT 60.379 57.895 0.00 0.00 40.22 3.55
3029 3204 0.965363 GCATGTTCGGGTGGACCATT 60.965 55.000 0.00 0.00 40.22 3.16
3030 3205 1.544724 CATGTTCGGGTGGACCATTT 58.455 50.000 0.00 0.00 40.22 2.32
3031 3206 1.472480 CATGTTCGGGTGGACCATTTC 59.528 52.381 0.00 0.00 40.22 2.17
3032 3207 0.250989 TGTTCGGGTGGACCATTTCC 60.251 55.000 0.00 0.00 46.13 3.13
3033 3208 0.037734 GTTCGGGTGGACCATTTCCT 59.962 55.000 0.00 0.00 46.10 3.36
3034 3209 1.279846 GTTCGGGTGGACCATTTCCTA 59.720 52.381 0.00 0.00 46.10 2.94
3035 3210 1.887797 TCGGGTGGACCATTTCCTAT 58.112 50.000 0.00 0.00 46.10 2.57
3036 3211 1.488812 TCGGGTGGACCATTTCCTATG 59.511 52.381 0.00 0.00 46.10 2.23
3037 3212 1.488812 CGGGTGGACCATTTCCTATGA 59.511 52.381 0.00 0.00 46.10 2.15
3038 3213 2.745152 CGGGTGGACCATTTCCTATGAC 60.745 54.545 0.00 0.00 46.10 3.06
3039 3214 2.509964 GGGTGGACCATTTCCTATGACT 59.490 50.000 0.00 0.00 46.10 3.41
3040 3215 3.433740 GGGTGGACCATTTCCTATGACTC 60.434 52.174 0.00 0.00 46.10 3.36
3041 3216 3.199946 GGTGGACCATTTCCTATGACTCA 59.800 47.826 0.00 0.00 46.10 3.41
3042 3217 4.141390 GGTGGACCATTTCCTATGACTCAT 60.141 45.833 0.00 0.00 46.10 2.90
3043 3218 5.440610 GTGGACCATTTCCTATGACTCATT 58.559 41.667 0.00 0.00 46.10 2.57
3044 3219 5.297776 GTGGACCATTTCCTATGACTCATTG 59.702 44.000 0.00 0.00 46.10 2.82
3045 3220 5.191522 TGGACCATTTCCTATGACTCATTGA 59.808 40.000 0.00 0.00 46.10 2.57
3046 3221 6.122277 GGACCATTTCCTATGACTCATTGAA 58.878 40.000 0.00 0.00 41.95 2.69
3047 3222 6.774656 GGACCATTTCCTATGACTCATTGAAT 59.225 38.462 0.00 0.00 41.95 2.57
3048 3223 7.255381 GGACCATTTCCTATGACTCATTGAATG 60.255 40.741 0.00 0.00 41.95 2.67
3049 3224 7.121382 ACCATTTCCTATGACTCATTGAATGT 58.879 34.615 4.93 0.00 0.00 2.71
3050 3225 7.616935 ACCATTTCCTATGACTCATTGAATGTT 59.383 33.333 4.93 0.00 0.00 2.71
3051 3226 7.919091 CCATTTCCTATGACTCATTGAATGTTG 59.081 37.037 4.93 2.64 0.00 3.33
3052 3227 8.680001 CATTTCCTATGACTCATTGAATGTTGA 58.320 33.333 4.93 0.00 0.00 3.18
3053 3228 7.854557 TTCCTATGACTCATTGAATGTTGAG 57.145 36.000 4.93 0.00 43.97 3.02
3054 3229 6.351711 TCCTATGACTCATTGAATGTTGAGG 58.648 40.000 4.93 5.32 42.93 3.86
3055 3230 6.070021 TCCTATGACTCATTGAATGTTGAGGT 60.070 38.462 4.93 0.00 42.93 3.85
3056 3231 5.892160 ATGACTCATTGAATGTTGAGGTG 57.108 39.130 4.93 0.00 42.93 4.00
3057 3232 4.074259 TGACTCATTGAATGTTGAGGTGG 58.926 43.478 4.93 0.00 42.93 4.61
3058 3233 3.424703 ACTCATTGAATGTTGAGGTGGG 58.575 45.455 4.93 0.00 42.93 4.61
3059 3234 2.165030 CTCATTGAATGTTGAGGTGGGC 59.835 50.000 4.93 0.00 36.53 5.36
3060 3235 1.205417 CATTGAATGTTGAGGTGGGCC 59.795 52.381 0.00 0.00 0.00 5.80
3071 3246 1.852633 AGGTGGGCCTTTTCTAATGC 58.147 50.000 4.53 0.00 44.18 3.56
3072 3247 1.077005 AGGTGGGCCTTTTCTAATGCA 59.923 47.619 4.53 0.00 44.18 3.96
3073 3248 2.110578 GGTGGGCCTTTTCTAATGCAT 58.889 47.619 4.53 0.00 0.00 3.96
3074 3249 2.159057 GGTGGGCCTTTTCTAATGCATG 60.159 50.000 4.53 0.00 0.00 4.06
3075 3250 2.497273 GTGGGCCTTTTCTAATGCATGT 59.503 45.455 4.53 0.00 0.00 3.21
3076 3251 3.055891 GTGGGCCTTTTCTAATGCATGTT 60.056 43.478 4.53 0.00 0.00 2.71
3077 3252 3.055963 TGGGCCTTTTCTAATGCATGTTG 60.056 43.478 4.53 0.00 0.00 3.33
3078 3253 2.931969 GGCCTTTTCTAATGCATGTTGC 59.068 45.455 0.00 0.00 45.29 4.17
3079 3254 3.368739 GGCCTTTTCTAATGCATGTTGCT 60.369 43.478 0.00 0.00 45.31 3.91
3080 3255 4.248058 GCCTTTTCTAATGCATGTTGCTT 58.752 39.130 0.00 0.00 45.31 3.91
3081 3256 4.092383 GCCTTTTCTAATGCATGTTGCTTG 59.908 41.667 0.00 0.00 45.31 4.01
3082 3257 5.472148 CCTTTTCTAATGCATGTTGCTTGA 58.528 37.500 0.00 0.00 45.31 3.02
3083 3258 6.103997 CCTTTTCTAATGCATGTTGCTTGAT 58.896 36.000 0.00 0.00 45.31 2.57
3084 3259 6.035650 CCTTTTCTAATGCATGTTGCTTGATG 59.964 38.462 0.00 0.00 45.31 3.07
3085 3260 5.900865 TTCTAATGCATGTTGCTTGATGA 57.099 34.783 0.00 0.00 45.31 2.92
3086 3261 5.494632 TCTAATGCATGTTGCTTGATGAG 57.505 39.130 0.00 0.00 45.31 2.90
3087 3262 3.520290 AATGCATGTTGCTTGATGAGG 57.480 42.857 0.00 0.00 45.31 3.86
3088 3263 1.913778 TGCATGTTGCTTGATGAGGT 58.086 45.000 0.75 0.00 45.31 3.85
3089 3264 3.070476 TGCATGTTGCTTGATGAGGTA 57.930 42.857 0.75 0.00 45.31 3.08
3090 3265 3.623703 TGCATGTTGCTTGATGAGGTAT 58.376 40.909 0.75 0.00 45.31 2.73
3091 3266 4.018490 TGCATGTTGCTTGATGAGGTATT 58.982 39.130 0.75 0.00 45.31 1.89
3092 3267 5.192176 TGCATGTTGCTTGATGAGGTATTA 58.808 37.500 0.75 0.00 45.31 0.98
3093 3268 5.829391 TGCATGTTGCTTGATGAGGTATTAT 59.171 36.000 0.75 0.00 45.31 1.28
3094 3269 6.147581 GCATGTTGCTTGATGAGGTATTATG 58.852 40.000 0.00 0.00 40.96 1.90
3095 3270 5.756195 TGTTGCTTGATGAGGTATTATGC 57.244 39.130 0.00 0.00 0.00 3.14
3096 3271 5.439721 TGTTGCTTGATGAGGTATTATGCT 58.560 37.500 0.00 0.00 0.00 3.79
3097 3272 5.887598 TGTTGCTTGATGAGGTATTATGCTT 59.112 36.000 0.00 0.00 0.00 3.91
3098 3273 6.183360 TGTTGCTTGATGAGGTATTATGCTTG 60.183 38.462 0.00 0.00 0.00 4.01
3099 3274 4.276678 TGCTTGATGAGGTATTATGCTTGC 59.723 41.667 0.00 0.00 0.00 4.01
3100 3275 4.276678 GCTTGATGAGGTATTATGCTTGCA 59.723 41.667 0.00 0.00 0.00 4.08
3101 3276 5.048224 GCTTGATGAGGTATTATGCTTGCAT 60.048 40.000 12.88 12.88 0.00 3.96
3102 3277 5.952526 TGATGAGGTATTATGCTTGCATG 57.047 39.130 17.26 0.00 0.00 4.06
3103 3278 5.379187 TGATGAGGTATTATGCTTGCATGT 58.621 37.500 17.26 8.94 0.00 3.21
3104 3279 5.829391 TGATGAGGTATTATGCTTGCATGTT 59.171 36.000 17.26 7.63 0.00 2.71
3105 3280 6.997476 TGATGAGGTATTATGCTTGCATGTTA 59.003 34.615 17.26 6.76 0.00 2.41
3106 3281 7.501892 TGATGAGGTATTATGCTTGCATGTTAA 59.498 33.333 17.26 5.21 0.00 2.01
3107 3282 7.263100 TGAGGTATTATGCTTGCATGTTAAG 57.737 36.000 17.26 7.29 0.00 1.85
3108 3283 7.053498 TGAGGTATTATGCTTGCATGTTAAGA 58.947 34.615 17.26 0.00 0.00 2.10
3109 3284 7.227314 TGAGGTATTATGCTTGCATGTTAAGAG 59.773 37.037 17.26 0.00 0.00 2.85
3110 3285 7.282585 AGGTATTATGCTTGCATGTTAAGAGA 58.717 34.615 17.26 0.00 0.00 3.10
3111 3286 7.775093 AGGTATTATGCTTGCATGTTAAGAGAA 59.225 33.333 17.26 2.52 0.00 2.87
3112 3287 8.405531 GGTATTATGCTTGCATGTTAAGAGAAA 58.594 33.333 17.26 1.86 0.00 2.52
3113 3288 9.956720 GTATTATGCTTGCATGTTAAGAGAAAT 57.043 29.630 17.26 8.50 0.00 2.17
3116 3291 6.441093 TGCTTGCATGTTAAGAGAAATAGG 57.559 37.500 13.75 0.00 0.00 2.57
3117 3292 5.945784 TGCTTGCATGTTAAGAGAAATAGGT 59.054 36.000 13.75 0.00 0.00 3.08
3118 3293 6.094048 TGCTTGCATGTTAAGAGAAATAGGTC 59.906 38.462 13.75 0.00 0.00 3.85
3119 3294 6.094048 GCTTGCATGTTAAGAGAAATAGGTCA 59.906 38.462 13.75 0.00 0.00 4.02
3120 3295 7.615582 TTGCATGTTAAGAGAAATAGGTCAG 57.384 36.000 0.00 0.00 0.00 3.51
3121 3296 6.711277 TGCATGTTAAGAGAAATAGGTCAGT 58.289 36.000 0.00 0.00 0.00 3.41
3122 3297 6.595326 TGCATGTTAAGAGAAATAGGTCAGTG 59.405 38.462 0.00 0.00 0.00 3.66
3123 3298 6.037610 GCATGTTAAGAGAAATAGGTCAGTGG 59.962 42.308 0.00 0.00 0.00 4.00
3124 3299 6.049955 TGTTAAGAGAAATAGGTCAGTGGG 57.950 41.667 0.00 0.00 0.00 4.61
3125 3300 5.045869 TGTTAAGAGAAATAGGTCAGTGGGG 60.046 44.000 0.00 0.00 0.00 4.96
3126 3301 3.491766 AGAGAAATAGGTCAGTGGGGA 57.508 47.619 0.00 0.00 0.00 4.81
3127 3302 3.108376 AGAGAAATAGGTCAGTGGGGAC 58.892 50.000 0.00 0.00 37.06 4.46
3128 3303 3.108376 GAGAAATAGGTCAGTGGGGACT 58.892 50.000 0.00 0.00 37.91 3.85
3129 3304 4.016479 AGAGAAATAGGTCAGTGGGGACTA 60.016 45.833 0.00 0.00 37.91 2.59
3130 3305 4.290942 AGAAATAGGTCAGTGGGGACTAG 58.709 47.826 0.00 0.00 37.91 2.57
3131 3306 3.778622 AATAGGTCAGTGGGGACTAGT 57.221 47.619 0.00 0.00 37.91 2.57
3132 3307 3.778622 ATAGGTCAGTGGGGACTAGTT 57.221 47.619 0.00 0.00 37.91 2.24
3133 3308 4.894252 ATAGGTCAGTGGGGACTAGTTA 57.106 45.455 0.00 0.00 37.91 2.24
3134 3309 3.778622 AGGTCAGTGGGGACTAGTTAT 57.221 47.619 0.00 0.00 37.91 1.89
3135 3310 4.076175 AGGTCAGTGGGGACTAGTTATT 57.924 45.455 0.00 0.00 37.91 1.40
3136 3311 4.436079 AGGTCAGTGGGGACTAGTTATTT 58.564 43.478 0.00 0.00 37.91 1.40
3137 3312 5.596763 AGGTCAGTGGGGACTAGTTATTTA 58.403 41.667 0.00 0.00 37.91 1.40
3138 3313 5.661759 AGGTCAGTGGGGACTAGTTATTTAG 59.338 44.000 0.00 0.00 37.91 1.85
3139 3314 5.659971 GGTCAGTGGGGACTAGTTATTTAGA 59.340 44.000 0.00 0.00 37.91 2.10
3140 3315 6.326843 GGTCAGTGGGGACTAGTTATTTAGAT 59.673 42.308 0.00 0.00 37.91 1.98
3141 3316 7.508296 GGTCAGTGGGGACTAGTTATTTAGATA 59.492 40.741 0.00 0.00 37.91 1.98
3142 3317 9.091220 GTCAGTGGGGACTAGTTATTTAGATAT 57.909 37.037 0.00 0.00 34.92 1.63
3165 3340 7.875316 ATAGAAGATATGTACATGTGAACGC 57.125 36.000 18.81 0.00 0.00 4.84
3166 3341 5.050490 AGAAGATATGTACATGTGAACGCC 58.950 41.667 18.81 0.00 0.00 5.68
3167 3342 4.672587 AGATATGTACATGTGAACGCCT 57.327 40.909 18.81 1.24 0.00 5.52
3168 3343 4.371786 AGATATGTACATGTGAACGCCTG 58.628 43.478 18.81 0.00 0.00 4.85
3169 3344 1.737838 ATGTACATGTGAACGCCTGG 58.262 50.000 7.78 0.00 0.00 4.45
3170 3345 0.953471 TGTACATGTGAACGCCTGGC 60.953 55.000 9.11 9.11 0.00 4.85
3171 3346 0.953471 GTACATGTGAACGCCTGGCA 60.953 55.000 20.29 0.00 0.00 4.92
3172 3347 0.250510 TACATGTGAACGCCTGGCAA 60.251 50.000 20.29 0.00 0.00 4.52
3173 3348 1.106351 ACATGTGAACGCCTGGCAAA 61.106 50.000 20.29 0.00 0.00 3.68
3174 3349 0.664166 CATGTGAACGCCTGGCAAAC 60.664 55.000 20.29 10.87 0.00 2.93
3175 3350 0.823356 ATGTGAACGCCTGGCAAACT 60.823 50.000 20.29 0.00 0.00 2.66
3176 3351 0.179043 TGTGAACGCCTGGCAAACTA 60.179 50.000 20.29 0.00 0.00 2.24
3177 3352 1.165270 GTGAACGCCTGGCAAACTAT 58.835 50.000 20.29 0.00 0.00 2.12
3178 3353 2.289756 TGTGAACGCCTGGCAAACTATA 60.290 45.455 20.29 0.00 0.00 1.31
3179 3354 2.943033 GTGAACGCCTGGCAAACTATAT 59.057 45.455 20.29 0.00 0.00 0.86
3180 3355 4.124238 GTGAACGCCTGGCAAACTATATA 58.876 43.478 20.29 0.00 0.00 0.86
3181 3356 4.755123 GTGAACGCCTGGCAAACTATATAT 59.245 41.667 20.29 0.00 0.00 0.86
3182 3357 4.754618 TGAACGCCTGGCAAACTATATATG 59.245 41.667 20.29 0.00 0.00 1.78
3183 3358 3.674997 ACGCCTGGCAAACTATATATGG 58.325 45.455 20.29 0.00 0.00 2.74
3184 3359 3.326588 ACGCCTGGCAAACTATATATGGA 59.673 43.478 20.29 0.00 0.00 3.41
3185 3360 3.684788 CGCCTGGCAAACTATATATGGAC 59.315 47.826 20.29 0.00 0.00 4.02
3186 3361 4.010349 GCCTGGCAAACTATATATGGACC 58.990 47.826 15.17 0.14 0.00 4.46
3187 3362 4.589908 CCTGGCAAACTATATATGGACCC 58.410 47.826 2.68 0.00 0.00 4.46
3188 3363 4.289672 CCTGGCAAACTATATATGGACCCT 59.710 45.833 2.68 0.00 0.00 4.34
3189 3364 5.241403 TGGCAAACTATATATGGACCCTG 57.759 43.478 2.68 0.00 0.00 4.45
3190 3365 4.910913 TGGCAAACTATATATGGACCCTGA 59.089 41.667 2.68 0.00 0.00 3.86
3191 3366 5.551583 TGGCAAACTATATATGGACCCTGAT 59.448 40.000 2.68 0.00 0.00 2.90
3192 3367 6.733334 TGGCAAACTATATATGGACCCTGATA 59.267 38.462 2.68 0.00 0.00 2.15
3193 3368 7.238723 TGGCAAACTATATATGGACCCTGATAA 59.761 37.037 2.68 0.00 0.00 1.75
3194 3369 7.770897 GGCAAACTATATATGGACCCTGATAAG 59.229 40.741 2.68 0.00 0.00 1.73
3195 3370 8.322091 GCAAACTATATATGGACCCTGATAAGT 58.678 37.037 2.68 0.00 0.00 2.24
3196 3371 9.658799 CAAACTATATATGGACCCTGATAAGTG 57.341 37.037 2.68 0.00 0.00 3.16
3197 3372 7.425224 ACTATATATGGACCCTGATAAGTGC 57.575 40.000 2.68 0.00 0.00 4.40
3198 3373 7.192628 ACTATATATGGACCCTGATAAGTGCT 58.807 38.462 2.68 0.00 0.00 4.40
3199 3374 8.344546 ACTATATATGGACCCTGATAAGTGCTA 58.655 37.037 2.68 0.00 0.00 3.49
3200 3375 5.746990 ATATGGACCCTGATAAGTGCTAC 57.253 43.478 0.00 0.00 0.00 3.58
3201 3376 2.116238 TGGACCCTGATAAGTGCTACC 58.884 52.381 0.00 0.00 0.00 3.18
3202 3377 1.416772 GGACCCTGATAAGTGCTACCC 59.583 57.143 0.00 0.00 0.00 3.69
3203 3378 1.068741 GACCCTGATAAGTGCTACCCG 59.931 57.143 0.00 0.00 0.00 5.28
3204 3379 1.120530 CCCTGATAAGTGCTACCCGT 58.879 55.000 0.00 0.00 0.00 5.28
3205 3380 1.068741 CCCTGATAAGTGCTACCCGTC 59.931 57.143 0.00 0.00 0.00 4.79
3206 3381 1.754803 CCTGATAAGTGCTACCCGTCA 59.245 52.381 0.00 0.00 0.00 4.35
3207 3382 2.223829 CCTGATAAGTGCTACCCGTCAG 60.224 54.545 0.00 0.00 33.29 3.51
3208 3383 1.754803 TGATAAGTGCTACCCGTCAGG 59.245 52.381 0.00 0.00 43.78 3.86
3217 3392 2.264794 CCCGTCAGGTACCAGCAC 59.735 66.667 15.94 6.26 35.12 4.40
3218 3393 2.579657 CCCGTCAGGTACCAGCACA 61.580 63.158 15.94 0.00 35.12 4.57
3219 3394 1.596934 CCGTCAGGTACCAGCACAT 59.403 57.895 15.94 0.00 0.00 3.21
3220 3395 0.740868 CCGTCAGGTACCAGCACATG 60.741 60.000 15.94 2.09 0.00 3.21
3231 3406 3.667087 GCACATGGCAACTCCGAA 58.333 55.556 0.00 0.00 43.97 4.30
3232 3407 1.210155 GCACATGGCAACTCCGAAC 59.790 57.895 0.00 0.00 43.97 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.338249 ACACAGCTAATCATTCAACGCT 58.662 40.909 0.00 0.00 0.00 5.07
61 69 1.340017 GGGGAGCAACACAGCTAATCA 60.340 52.381 0.00 0.00 46.75 2.57
170 181 1.471676 CGGTGGGAGTAGCAATCAGTC 60.472 57.143 0.00 0.00 0.00 3.51
178 189 0.035739 TTTGGAACGGTGGGAGTAGC 59.964 55.000 0.00 0.00 0.00 3.58
179 190 2.554370 TTTTGGAACGGTGGGAGTAG 57.446 50.000 0.00 0.00 0.00 2.57
180 191 3.839490 TCTATTTTGGAACGGTGGGAGTA 59.161 43.478 0.00 0.00 0.00 2.59
181 192 2.640826 TCTATTTTGGAACGGTGGGAGT 59.359 45.455 0.00 0.00 0.00 3.85
182 193 3.343941 TCTATTTTGGAACGGTGGGAG 57.656 47.619 0.00 0.00 0.00 4.30
183 194 3.264706 TCATCTATTTTGGAACGGTGGGA 59.735 43.478 0.00 0.00 0.00 4.37
184 195 3.377172 GTCATCTATTTTGGAACGGTGGG 59.623 47.826 0.00 0.00 0.00 4.61
185 196 3.377172 GGTCATCTATTTTGGAACGGTGG 59.623 47.826 0.00 0.00 0.00 4.61
186 197 3.377172 GGGTCATCTATTTTGGAACGGTG 59.623 47.826 0.00 0.00 0.00 4.94
187 198 3.009695 TGGGTCATCTATTTTGGAACGGT 59.990 43.478 0.00 0.00 0.00 4.83
188 199 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
189 200 5.835113 ATTGGGTCATCTATTTTGGAACG 57.165 39.130 0.00 0.00 0.00 3.95
190 201 7.877612 ACAAAATTGGGTCATCTATTTTGGAAC 59.122 33.333 19.76 0.00 45.43 3.62
191 202 7.972301 ACAAAATTGGGTCATCTATTTTGGAA 58.028 30.769 19.76 0.00 45.43 3.53
192 203 7.552050 ACAAAATTGGGTCATCTATTTTGGA 57.448 32.000 19.76 0.00 45.43 3.53
193 204 9.889128 AATACAAAATTGGGTCATCTATTTTGG 57.111 29.630 19.76 9.08 45.43 3.28
226 237 9.778741 TCAAAATAGATGACTCAACTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
229 240 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
230 241 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
231 242 8.836413 TCGTTTCAAAATAGATGACTCAACTTT 58.164 29.630 0.00 0.00 0.00 2.66
232 243 8.378172 TCGTTTCAAAATAGATGACTCAACTT 57.622 30.769 0.00 0.00 0.00 2.66
233 244 7.962964 TCGTTTCAAAATAGATGACTCAACT 57.037 32.000 0.00 0.00 0.00 3.16
234 245 7.746475 CCTTCGTTTCAAAATAGATGACTCAAC 59.254 37.037 0.00 0.00 0.00 3.18
235 246 7.094805 CCCTTCGTTTCAAAATAGATGACTCAA 60.095 37.037 0.00 0.00 0.00 3.02
236 247 6.371548 CCCTTCGTTTCAAAATAGATGACTCA 59.628 38.462 0.00 0.00 0.00 3.41
237 248 6.594159 TCCCTTCGTTTCAAAATAGATGACTC 59.406 38.462 0.00 0.00 0.00 3.36
238 249 6.472887 TCCCTTCGTTTCAAAATAGATGACT 58.527 36.000 0.00 0.00 0.00 3.41
239 250 6.371825 ACTCCCTTCGTTTCAAAATAGATGAC 59.628 38.462 0.00 0.00 0.00 3.06
240 251 6.472887 ACTCCCTTCGTTTCAAAATAGATGA 58.527 36.000 0.00 0.00 0.00 2.92
241 252 6.743575 ACTCCCTTCGTTTCAAAATAGATG 57.256 37.500 0.00 0.00 0.00 2.90
242 253 7.621796 ACTACTCCCTTCGTTTCAAAATAGAT 58.378 34.615 0.00 0.00 0.00 1.98
243 254 7.001099 ACTACTCCCTTCGTTTCAAAATAGA 57.999 36.000 0.00 0.00 0.00 1.98
244 255 7.668525 AACTACTCCCTTCGTTTCAAAATAG 57.331 36.000 0.00 0.00 0.00 1.73
245 256 8.149647 TGTAACTACTCCCTTCGTTTCAAAATA 58.850 33.333 0.00 0.00 0.00 1.40
246 257 6.993902 TGTAACTACTCCCTTCGTTTCAAAAT 59.006 34.615 0.00 0.00 0.00 1.82
247 258 6.347696 TGTAACTACTCCCTTCGTTTCAAAA 58.652 36.000 0.00 0.00 0.00 2.44
248 259 5.916318 TGTAACTACTCCCTTCGTTTCAAA 58.084 37.500 0.00 0.00 0.00 2.69
249 260 5.534207 TGTAACTACTCCCTTCGTTTCAA 57.466 39.130 0.00 0.00 0.00 2.69
250 261 5.733620 ATGTAACTACTCCCTTCGTTTCA 57.266 39.130 0.00 0.00 0.00 2.69
251 262 6.624423 TGTATGTAACTACTCCCTTCGTTTC 58.376 40.000 0.00 0.00 0.00 2.78
252 263 6.594788 TGTATGTAACTACTCCCTTCGTTT 57.405 37.500 0.00 0.00 0.00 3.60
253 264 6.154021 ACATGTATGTAACTACTCCCTTCGTT 59.846 38.462 0.00 0.00 39.68 3.85
254 265 5.655532 ACATGTATGTAACTACTCCCTTCGT 59.344 40.000 0.00 0.00 39.68 3.85
255 266 6.145338 ACATGTATGTAACTACTCCCTTCG 57.855 41.667 0.00 0.00 39.68 3.79
369 392 2.612972 GCTCCTCGGAGATCACAAACAA 60.613 50.000 16.92 0.00 44.53 2.83
389 412 2.046313 CACATGACTTCACAAAAGCGC 58.954 47.619 0.00 0.00 0.00 5.92
445 468 6.321181 TCTTAAAATTGTCTTGCAGGTGAACT 59.679 34.615 0.00 0.00 0.00 3.01
463 486 2.054232 TTGCACCCACGGTCTTAAAA 57.946 45.000 0.00 0.00 31.02 1.52
474 497 5.606348 AAAAACTGAGTAAATTGCACCCA 57.394 34.783 0.00 0.00 0.00 4.51
528 596 6.311935 CGGTGTAATGCTAGCTAAAACACTAA 59.688 38.462 26.80 5.22 36.77 2.24
529 597 5.808540 CGGTGTAATGCTAGCTAAAACACTA 59.191 40.000 26.80 5.83 36.77 2.74
619 762 6.883217 TCTGAACTACTTGACCTATAACGACT 59.117 38.462 0.00 0.00 0.00 4.18
668 812 6.835819 TCCTAGTACCGATGGATTTCTATG 57.164 41.667 0.00 0.00 0.00 2.23
680 824 1.888215 CACGCCTATCCTAGTACCGA 58.112 55.000 0.00 0.00 0.00 4.69
735 879 2.541907 ATGGGGAGCAACACAGCCT 61.542 57.895 0.00 0.00 34.23 4.58
759 903 6.992063 AGAATATTAGCCAGTTGTTGTCTG 57.008 37.500 0.00 0.00 0.00 3.51
821 967 9.689976 CAATCAGTTTGGACATGTAAATTAACA 57.310 29.630 0.00 0.00 0.00 2.41
831 977 7.764331 TGTAATGATCAATCAGTTTGGACATG 58.236 34.615 0.00 0.00 40.64 3.21
895 1041 4.519730 TGATGTGATGTGAAATGCAAGACA 59.480 37.500 0.00 0.00 0.00 3.41
896 1042 5.050644 TGATGTGATGTGAAATGCAAGAC 57.949 39.130 0.00 0.00 0.00 3.01
897 1043 5.650703 AGATGATGTGATGTGAAATGCAAGA 59.349 36.000 0.00 0.00 0.00 3.02
898 1044 5.743872 CAGATGATGTGATGTGAAATGCAAG 59.256 40.000 0.00 0.00 0.00 4.01
899 1045 5.646606 CAGATGATGTGATGTGAAATGCAA 58.353 37.500 0.00 0.00 0.00 4.08
903 1049 3.314357 CGGCAGATGATGTGATGTGAAAT 59.686 43.478 0.00 0.00 0.00 2.17
906 1052 1.473788 CCGGCAGATGATGTGATGTGA 60.474 52.381 0.00 0.00 0.00 3.58
966 1112 6.378280 AGTTCTTGGCTAAACAATAAGGGATG 59.622 38.462 0.00 0.00 0.00 3.51
1004 1150 2.936919 TGTCAGCTTCACCATCTTGT 57.063 45.000 0.00 0.00 0.00 3.16
1080 1226 3.548668 TGTAGAAATCGTACGGCAATTCG 59.451 43.478 16.52 0.00 0.00 3.34
1093 1239 2.541762 GGCATGACGAGCTGTAGAAATC 59.458 50.000 0.00 0.00 0.00 2.17
1119 1265 1.821216 TCTTGATTGTTTCCTCGGCC 58.179 50.000 0.00 0.00 0.00 6.13
1141 1287 2.314122 GTCGGTCAAGTTGTAGACGAC 58.686 52.381 19.60 19.60 35.63 4.34
1142 1288 2.693797 GTCGGTCAAGTTGTAGACGA 57.306 50.000 2.11 6.35 35.63 4.20
1157 1303 0.675522 AATACTTGGGTTGGCGTCGG 60.676 55.000 0.00 0.00 0.00 4.79
1163 1309 0.171007 CGCAGCAATACTTGGGTTGG 59.829 55.000 0.00 0.00 0.00 3.77
1195 1341 0.877071 AAGCAATCGTGGAAGTGCAG 59.123 50.000 0.00 0.00 39.50 4.41
1282 1432 9.328845 GGATATACGTTCATAACCCAAAGTAAA 57.671 33.333 0.00 0.00 0.00 2.01
1285 1435 6.891388 TGGATATACGTTCATAACCCAAAGT 58.109 36.000 0.00 0.00 0.00 2.66
1297 1447 7.201145 AGCGATGGTATATTGGATATACGTTC 58.799 38.462 0.00 8.99 45.40 3.95
1298 1448 7.108841 AGCGATGGTATATTGGATATACGTT 57.891 36.000 0.00 3.09 45.40 3.99
1300 1450 7.200455 TGAAGCGATGGTATATTGGATATACG 58.800 38.462 10.39 0.00 45.40 3.06
1302 1452 8.977412 TCTTGAAGCGATGGTATATTGGATATA 58.023 33.333 0.00 0.00 0.00 0.86
1304 1454 7.239763 TCTTGAAGCGATGGTATATTGGATA 57.760 36.000 0.00 0.00 0.00 2.59
1319 1474 9.903682 AAATGGAAATTATATCATCTTGAAGCG 57.096 29.630 0.00 0.00 0.00 4.68
1359 1515 3.760580 ATGGAAATTCACCCGCAAAAA 57.239 38.095 0.00 0.00 0.00 1.94
1360 1516 3.760580 AATGGAAATTCACCCGCAAAA 57.239 38.095 0.00 0.00 0.00 2.44
1361 1517 3.760580 AAATGGAAATTCACCCGCAAA 57.239 38.095 0.00 0.00 0.00 3.68
1362 1518 5.413309 AATAAATGGAAATTCACCCGCAA 57.587 34.783 0.00 0.00 0.00 4.85
1363 1519 6.071334 TGTTAATAAATGGAAATTCACCCGCA 60.071 34.615 0.00 0.00 0.00 5.69
1364 1520 6.334202 TGTTAATAAATGGAAATTCACCCGC 58.666 36.000 0.00 0.00 0.00 6.13
1365 1521 8.194104 TCATGTTAATAAATGGAAATTCACCCG 58.806 33.333 0.00 0.00 0.00 5.28
1366 1522 9.313118 GTCATGTTAATAAATGGAAATTCACCC 57.687 33.333 0.00 0.00 0.00 4.61
1418 1574 7.954786 CGCAAAAACATTTCAAAAGTTTAGTGT 59.045 29.630 3.99 0.00 34.64 3.55
1419 1575 7.954786 ACGCAAAAACATTTCAAAAGTTTAGTG 59.045 29.630 3.99 8.87 34.64 2.74
1420 1576 8.024146 ACGCAAAAACATTTCAAAAGTTTAGT 57.976 26.923 3.99 1.15 34.64 2.24
1421 1577 8.774967 CAACGCAAAAACATTTCAAAAGTTTAG 58.225 29.630 3.99 2.37 34.64 1.85
1422 1578 8.495949 TCAACGCAAAAACATTTCAAAAGTTTA 58.504 25.926 3.99 0.00 34.64 2.01
1423 1579 7.355778 TCAACGCAAAAACATTTCAAAAGTTT 58.644 26.923 0.00 0.00 37.08 2.66
1431 1589 5.231147 TGTTAGCTCAACGCAAAAACATTTC 59.769 36.000 0.00 0.00 42.61 2.17
1433 1591 4.677584 TGTTAGCTCAACGCAAAAACATT 58.322 34.783 0.00 0.00 42.61 2.71
1456 1614 5.181690 TGATATCAACGGCCAAATTAAGC 57.818 39.130 1.98 0.00 0.00 3.09
1460 1618 5.243730 CCCTAATGATATCAACGGCCAAATT 59.756 40.000 9.99 0.00 0.00 1.82
1461 1619 4.766891 CCCTAATGATATCAACGGCCAAAT 59.233 41.667 9.99 0.00 0.00 2.32
1462 1620 4.141287 CCCTAATGATATCAACGGCCAAA 58.859 43.478 9.99 0.00 0.00 3.28
1463 1621 3.137544 ACCCTAATGATATCAACGGCCAA 59.862 43.478 9.99 0.00 0.00 4.52
1475 1633 3.435601 GGAGGCATCACAACCCTAATGAT 60.436 47.826 0.00 0.00 33.28 2.45
1479 1637 1.367346 TGGAGGCATCACAACCCTAA 58.633 50.000 0.00 0.00 0.00 2.69
1491 1649 1.556911 GAGTTCAGAAGGATGGAGGCA 59.443 52.381 0.00 0.00 0.00 4.75
1494 1652 2.100584 CGAGGAGTTCAGAAGGATGGAG 59.899 54.545 0.00 0.00 0.00 3.86
1507 1665 1.301479 GGTTGGCGTTCGAGGAGTT 60.301 57.895 0.00 0.00 0.00 3.01
1552 1710 1.115930 ACGGCCTCATACCCAGCTAG 61.116 60.000 0.00 0.00 0.00 3.42
1554 1712 2.365635 ACGGCCTCATACCCAGCT 60.366 61.111 0.00 0.00 0.00 4.24
1674 1832 1.139095 GCGGACGTGGTAGGAGAAG 59.861 63.158 0.00 0.00 0.00 2.85
1727 1885 1.728971 GCATGTTCGTGAAGACAGAGG 59.271 52.381 0.00 0.00 0.00 3.69
1857 2015 3.618171 GTTAGTGAACCCGGAGCAA 57.382 52.632 0.73 0.00 0.00 3.91
1866 2024 1.673923 GGGTACAGCCGGTTAGTGAAC 60.674 57.143 1.90 0.00 38.44 3.18
1872 2030 2.037049 TCGGGGTACAGCCGGTTA 59.963 61.111 1.90 0.00 38.44 2.85
1897 2055 2.677573 TATGCAGCGTCCATCGTCGG 62.678 60.000 0.00 0.00 42.13 4.79
1923 2081 1.675116 GGGCACGTCTTCTTTAGGTCC 60.675 57.143 0.00 0.00 0.00 4.46
1989 2147 4.704833 AGCATTGTCGGCGCCACT 62.705 61.111 28.98 8.33 36.08 4.00
2088 2246 4.617520 TCTTGCACCTTCGCCGCA 62.618 61.111 0.00 0.00 0.00 5.69
2090 2248 0.660300 GTTTTCTTGCACCTTCGCCG 60.660 55.000 0.00 0.00 0.00 6.46
2103 2261 1.668151 GGAGTCGCCAGCGTTTTCT 60.668 57.895 12.32 6.70 40.74 2.52
2114 2272 0.868406 CTTCCACAACAAGGAGTCGC 59.132 55.000 0.00 0.00 36.33 5.19
2115 2273 1.202651 ACCTTCCACAACAAGGAGTCG 60.203 52.381 5.47 0.00 42.94 4.18
2148 2306 3.054434 TGTTTCCCATCTTGACCATCGAT 60.054 43.478 0.00 0.00 0.00 3.59
2214 2372 4.526262 ACAATTTAGCTGTTTATGGCACCA 59.474 37.500 0.00 0.00 0.00 4.17
2215 2373 5.072040 ACAATTTAGCTGTTTATGGCACC 57.928 39.130 0.00 0.00 0.00 5.01
2254 2412 4.696455 AGGCACAAAAGAAAAATCACCAG 58.304 39.130 0.00 0.00 0.00 4.00
2288 2446 4.154918 GCGACAAGGAGAAATCTTGAATGT 59.845 41.667 10.30 0.00 42.94 2.71
2309 2467 4.760047 AGTAACTGGCCGGCTGCG 62.760 66.667 28.56 16.99 42.61 5.18
2310 2468 3.127533 CAGTAACTGGCCGGCTGC 61.128 66.667 28.56 11.61 40.16 5.25
2318 2476 6.938030 TCTAACCAAAATACCACAGTAACTGG 59.062 38.462 0.00 0.00 35.51 4.00
2344 2502 9.318041 CAGAAAAGTAGTTTTACATGTGAATCG 57.682 33.333 9.11 0.00 35.94 3.34
2401 2560 3.160679 AGTGCACCTTTTCTAGCCAAT 57.839 42.857 14.63 0.00 0.00 3.16
2428 2588 0.247460 GGCAGGAAATCAAGGGCAAC 59.753 55.000 0.00 0.00 0.00 4.17
2434 2594 7.286316 ACTTATCCAAATAGGCAGGAAATCAAG 59.714 37.037 0.00 0.00 37.29 3.02
2470 2630 2.094182 AGTATCAAACACACTCGCGGAT 60.094 45.455 6.13 0.00 0.00 4.18
2509 2669 6.587273 GTCTTATATTATGGATGGAGGGAGC 58.413 44.000 0.00 0.00 0.00 4.70
2559 2719 9.768662 GTACTCTCCGTCCCATAATATTTAAAA 57.231 33.333 0.00 0.00 0.00 1.52
2560 2720 8.084073 CGTACTCTCCGTCCCATAATATTTAAA 58.916 37.037 0.00 0.00 0.00 1.52
2561 2721 7.231317 ACGTACTCTCCGTCCCATAATATTTAA 59.769 37.037 0.00 0.00 31.97 1.52
2562 2722 6.716628 ACGTACTCTCCGTCCCATAATATTTA 59.283 38.462 0.00 0.00 31.97 1.40
2564 2724 5.075493 ACGTACTCTCCGTCCCATAATATT 58.925 41.667 0.00 0.00 31.97 1.28
2572 2737 2.205911 GTACTACGTACTCTCCGTCCC 58.794 57.143 0.00 0.00 39.60 4.46
2576 2741 6.775939 TGATTATGTACTACGTACTCTCCG 57.224 41.667 5.83 0.00 39.49 4.63
2583 2748 9.783081 TCCATAGACTTGATTATGTACTACGTA 57.217 33.333 0.00 0.00 0.00 3.57
2584 2749 8.687292 TCCATAGACTTGATTATGTACTACGT 57.313 34.615 0.00 0.00 0.00 3.57
2585 2750 9.613957 CTTCCATAGACTTGATTATGTACTACG 57.386 37.037 0.00 0.00 0.00 3.51
2605 2770 9.965902 GTCCATGGTTTATCTATAATCTTCCAT 57.034 33.333 12.58 0.00 34.12 3.41
2606 2771 8.094548 CGTCCATGGTTTATCTATAATCTTCCA 58.905 37.037 12.58 0.00 0.00 3.53
2608 2773 7.201444 CGCGTCCATGGTTTATCTATAATCTTC 60.201 40.741 12.58 0.00 0.00 2.87
2610 2775 6.100004 CGCGTCCATGGTTTATCTATAATCT 58.900 40.000 12.58 0.00 0.00 2.40
2611 2776 5.220416 GCGCGTCCATGGTTTATCTATAATC 60.220 44.000 12.58 0.00 0.00 1.75
2612 2777 4.630069 GCGCGTCCATGGTTTATCTATAAT 59.370 41.667 12.58 0.00 0.00 1.28
2614 2779 3.581755 GCGCGTCCATGGTTTATCTATA 58.418 45.455 12.58 0.00 0.00 1.31
2620 2790 2.816083 CGGCGCGTCCATGGTTTA 60.816 61.111 12.58 0.00 34.01 2.01
2662 2832 0.666577 GTGCTTTCAGCTACGGTCGT 60.667 55.000 0.69 0.69 42.97 4.34
2666 2836 0.671781 AGCAGTGCTTTCAGCTACGG 60.672 55.000 13.14 0.00 42.97 4.02
2667 2837 0.441533 CAGCAGTGCTTTCAGCTACG 59.558 55.000 16.89 0.00 42.97 3.51
2743 2917 0.541863 CTTCATCCCCGTAGCACCTT 59.458 55.000 0.00 0.00 0.00 3.50
2763 2938 1.006102 ACGACAGAACTTCCTGCCG 60.006 57.895 0.00 0.00 43.92 5.69
2839 3014 0.450184 ATATTCCCGCAACAACGTGC 59.550 50.000 0.00 0.00 41.32 5.34
2840 3015 2.095466 ACAATATTCCCGCAACAACGTG 60.095 45.455 0.00 0.00 0.00 4.49
2841 3016 2.095466 CACAATATTCCCGCAACAACGT 60.095 45.455 0.00 0.00 0.00 3.99
2842 3017 2.514902 CACAATATTCCCGCAACAACG 58.485 47.619 0.00 0.00 0.00 4.10
2843 3018 2.258755 GCACAATATTCCCGCAACAAC 58.741 47.619 0.00 0.00 0.00 3.32
2844 3019 1.889170 TGCACAATATTCCCGCAACAA 59.111 42.857 1.46 0.00 0.00 2.83
2845 3020 1.539157 TGCACAATATTCCCGCAACA 58.461 45.000 1.46 0.00 0.00 3.33
2846 3021 2.645730 TTGCACAATATTCCCGCAAC 57.354 45.000 10.24 0.00 37.64 4.17
2847 3022 6.832520 ATATATTGCACAATATTCCCGCAA 57.167 33.333 18.31 14.65 45.70 4.85
2848 3023 6.832520 AATATATTGCACAATATTCCCGCA 57.167 33.333 18.31 3.24 42.29 5.69
2849 3024 7.312154 TGAAATATATTGCACAATATTCCCGC 58.688 34.615 18.31 7.98 42.29 6.13
2850 3025 9.689976 TTTGAAATATATTGCACAATATTCCCG 57.310 29.630 18.31 0.00 42.29 5.14
2898 3073 9.967346 CTCTCATATTATTTTTCCGAGTACTCA 57.033 33.333 22.37 0.95 0.00 3.41
2899 3074 8.917655 GCTCTCATATTATTTTTCCGAGTACTC 58.082 37.037 13.18 13.18 0.00 2.59
2900 3075 8.643324 AGCTCTCATATTATTTTTCCGAGTACT 58.357 33.333 0.00 0.00 0.00 2.73
2901 3076 8.819643 AGCTCTCATATTATTTTTCCGAGTAC 57.180 34.615 0.00 0.00 0.00 2.73
2903 3078 9.832445 TTTAGCTCTCATATTATTTTTCCGAGT 57.168 29.630 0.00 0.00 0.00 4.18
3004 3179 0.602562 CCACCCGAACATGCAAACAT 59.397 50.000 0.00 0.00 36.79 2.71
3005 3180 0.466372 TCCACCCGAACATGCAAACA 60.466 50.000 0.00 0.00 0.00 2.83
3006 3181 0.039527 GTCCACCCGAACATGCAAAC 60.040 55.000 0.00 0.00 0.00 2.93
3007 3182 1.175983 GGTCCACCCGAACATGCAAA 61.176 55.000 0.00 0.00 0.00 3.68
3008 3183 1.602323 GGTCCACCCGAACATGCAA 60.602 57.895 0.00 0.00 0.00 4.08
3009 3184 2.033448 GGTCCACCCGAACATGCA 59.967 61.111 0.00 0.00 0.00 3.96
3010 3185 2.033448 TGGTCCACCCGAACATGC 59.967 61.111 0.00 0.00 31.39 4.06
3013 3188 0.250989 GGAAATGGTCCACCCGAACA 60.251 55.000 0.00 0.00 46.97 3.18
3014 3189 2.563297 GGAAATGGTCCACCCGAAC 58.437 57.895 0.00 0.00 46.97 3.95
3023 3198 7.284034 ACATTCAATGAGTCATAGGAAATGGTC 59.716 37.037 18.60 0.00 0.00 4.02
3024 3199 7.121382 ACATTCAATGAGTCATAGGAAATGGT 58.879 34.615 18.60 15.01 0.00 3.55
3025 3200 7.578310 ACATTCAATGAGTCATAGGAAATGG 57.422 36.000 18.60 14.58 0.00 3.16
3026 3201 8.680001 TCAACATTCAATGAGTCATAGGAAATG 58.320 33.333 18.60 18.58 0.00 2.32
3027 3202 8.812513 TCAACATTCAATGAGTCATAGGAAAT 57.187 30.769 18.60 10.78 0.00 2.17
3028 3203 7.337689 CCTCAACATTCAATGAGTCATAGGAAA 59.662 37.037 18.60 7.65 41.16 3.13
3029 3204 6.825213 CCTCAACATTCAATGAGTCATAGGAA 59.175 38.462 17.56 17.56 41.16 3.36
3030 3205 6.070021 ACCTCAACATTCAATGAGTCATAGGA 60.070 38.462 16.25 10.46 41.16 2.94
3031 3206 6.037940 CACCTCAACATTCAATGAGTCATAGG 59.962 42.308 5.94 8.50 41.16 2.57
3032 3207 6.037940 CCACCTCAACATTCAATGAGTCATAG 59.962 42.308 5.94 0.00 41.16 2.23
3033 3208 5.882000 CCACCTCAACATTCAATGAGTCATA 59.118 40.000 5.94 0.00 41.16 2.15
3034 3209 4.703575 CCACCTCAACATTCAATGAGTCAT 59.296 41.667 3.79 0.00 41.16 3.06
3035 3210 4.074259 CCACCTCAACATTCAATGAGTCA 58.926 43.478 3.79 0.00 41.16 3.41
3036 3211 3.441572 CCCACCTCAACATTCAATGAGTC 59.558 47.826 3.79 0.00 41.16 3.36
3037 3212 3.424703 CCCACCTCAACATTCAATGAGT 58.575 45.455 3.79 0.00 41.16 3.41
3038 3213 2.165030 GCCCACCTCAACATTCAATGAG 59.835 50.000 3.79 0.00 42.15 2.90
3039 3214 2.170166 GCCCACCTCAACATTCAATGA 58.830 47.619 3.79 0.00 0.00 2.57
3040 3215 1.205417 GGCCCACCTCAACATTCAATG 59.795 52.381 0.00 0.00 0.00 2.82
3041 3216 1.077663 AGGCCCACCTCAACATTCAAT 59.922 47.619 0.00 0.00 46.34 2.57
3042 3217 0.482446 AGGCCCACCTCAACATTCAA 59.518 50.000 0.00 0.00 46.34 2.69
3043 3218 2.163454 AGGCCCACCTCAACATTCA 58.837 52.632 0.00 0.00 46.34 2.57
3053 3228 1.555967 TGCATTAGAAAAGGCCCACC 58.444 50.000 0.00 0.00 41.66 4.61
3054 3229 2.497273 ACATGCATTAGAAAAGGCCCAC 59.503 45.455 0.00 0.00 41.66 4.61
3055 3230 2.818921 ACATGCATTAGAAAAGGCCCA 58.181 42.857 0.00 0.00 41.66 5.36
3056 3231 3.524541 CAACATGCATTAGAAAAGGCCC 58.475 45.455 0.00 0.00 41.66 5.80
3057 3232 2.931969 GCAACATGCATTAGAAAAGGCC 59.068 45.455 0.00 0.00 44.26 5.19
3070 3245 4.644103 AATACCTCATCAAGCAACATGC 57.356 40.909 0.00 0.00 45.46 4.06
3071 3246 6.016527 AGCATAATACCTCATCAAGCAACATG 60.017 38.462 0.00 0.00 0.00 3.21
3072 3247 6.066690 AGCATAATACCTCATCAAGCAACAT 58.933 36.000 0.00 0.00 0.00 2.71
3073 3248 5.439721 AGCATAATACCTCATCAAGCAACA 58.560 37.500 0.00 0.00 0.00 3.33
3074 3249 6.204359 CAAGCATAATACCTCATCAAGCAAC 58.796 40.000 0.00 0.00 0.00 4.17
3075 3250 5.221106 GCAAGCATAATACCTCATCAAGCAA 60.221 40.000 0.00 0.00 0.00 3.91
3076 3251 4.276678 GCAAGCATAATACCTCATCAAGCA 59.723 41.667 0.00 0.00 0.00 3.91
3077 3252 4.276678 TGCAAGCATAATACCTCATCAAGC 59.723 41.667 0.00 0.00 0.00 4.01
3078 3253 6.016527 ACATGCAAGCATAATACCTCATCAAG 60.017 38.462 7.29 0.00 34.91 3.02
3079 3254 5.829391 ACATGCAAGCATAATACCTCATCAA 59.171 36.000 7.29 0.00 34.91 2.57
3080 3255 5.379187 ACATGCAAGCATAATACCTCATCA 58.621 37.500 7.29 0.00 34.91 3.07
3081 3256 5.954296 ACATGCAAGCATAATACCTCATC 57.046 39.130 7.29 0.00 34.91 2.92
3082 3257 7.720957 TCTTAACATGCAAGCATAATACCTCAT 59.279 33.333 7.29 0.00 34.91 2.90
3083 3258 7.053498 TCTTAACATGCAAGCATAATACCTCA 58.947 34.615 7.29 0.00 34.91 3.86
3084 3259 7.442364 TCTCTTAACATGCAAGCATAATACCTC 59.558 37.037 7.29 0.00 34.91 3.85
3085 3260 7.282585 TCTCTTAACATGCAAGCATAATACCT 58.717 34.615 7.29 0.00 34.91 3.08
3086 3261 7.496529 TCTCTTAACATGCAAGCATAATACC 57.503 36.000 7.29 0.00 34.91 2.73
3087 3262 9.956720 ATTTCTCTTAACATGCAAGCATAATAC 57.043 29.630 7.29 0.00 34.91 1.89
3090 3265 8.623903 CCTATTTCTCTTAACATGCAAGCATAA 58.376 33.333 7.29 0.00 34.91 1.90
3091 3266 7.775093 ACCTATTTCTCTTAACATGCAAGCATA 59.225 33.333 7.29 0.00 34.91 3.14
3092 3267 6.604795 ACCTATTTCTCTTAACATGCAAGCAT 59.395 34.615 0.86 0.86 37.08 3.79
3093 3268 5.945784 ACCTATTTCTCTTAACATGCAAGCA 59.054 36.000 0.00 0.00 0.00 3.91
3094 3269 6.094048 TGACCTATTTCTCTTAACATGCAAGC 59.906 38.462 0.00 0.00 0.00 4.01
3095 3270 7.335422 ACTGACCTATTTCTCTTAACATGCAAG 59.665 37.037 0.00 0.00 0.00 4.01
3096 3271 7.119699 CACTGACCTATTTCTCTTAACATGCAA 59.880 37.037 0.00 0.00 0.00 4.08
3097 3272 6.595326 CACTGACCTATTTCTCTTAACATGCA 59.405 38.462 0.00 0.00 0.00 3.96
3098 3273 6.037610 CCACTGACCTATTTCTCTTAACATGC 59.962 42.308 0.00 0.00 0.00 4.06
3099 3274 6.540189 CCCACTGACCTATTTCTCTTAACATG 59.460 42.308 0.00 0.00 0.00 3.21
3100 3275 6.353082 CCCCACTGACCTATTTCTCTTAACAT 60.353 42.308 0.00 0.00 0.00 2.71
3101 3276 5.045869 CCCCACTGACCTATTTCTCTTAACA 60.046 44.000 0.00 0.00 0.00 2.41
3102 3277 5.189145 TCCCCACTGACCTATTTCTCTTAAC 59.811 44.000 0.00 0.00 0.00 2.01
3103 3278 5.189145 GTCCCCACTGACCTATTTCTCTTAA 59.811 44.000 0.00 0.00 0.00 1.85
3104 3279 4.715297 GTCCCCACTGACCTATTTCTCTTA 59.285 45.833 0.00 0.00 0.00 2.10
3105 3280 3.519913 GTCCCCACTGACCTATTTCTCTT 59.480 47.826 0.00 0.00 0.00 2.85
3106 3281 3.108376 GTCCCCACTGACCTATTTCTCT 58.892 50.000 0.00 0.00 0.00 3.10
3107 3282 3.108376 AGTCCCCACTGACCTATTTCTC 58.892 50.000 0.00 0.00 35.83 2.87
3108 3283 3.207044 AGTCCCCACTGACCTATTTCT 57.793 47.619 0.00 0.00 35.83 2.52
3109 3284 4.031611 ACTAGTCCCCACTGACCTATTTC 58.968 47.826 0.00 0.00 35.83 2.17
3110 3285 4.076175 ACTAGTCCCCACTGACCTATTT 57.924 45.455 0.00 0.00 35.83 1.40
3111 3286 3.778622 ACTAGTCCCCACTGACCTATT 57.221 47.619 0.00 0.00 35.83 1.73
3112 3287 3.778622 AACTAGTCCCCACTGACCTAT 57.221 47.619 0.00 0.00 35.83 2.57
3113 3288 4.894252 ATAACTAGTCCCCACTGACCTA 57.106 45.455 0.00 0.00 35.83 3.08
3114 3289 3.778622 ATAACTAGTCCCCACTGACCT 57.221 47.619 0.00 0.00 35.83 3.85
3115 3290 4.838904 AAATAACTAGTCCCCACTGACC 57.161 45.455 0.00 0.00 35.83 4.02
3116 3291 6.786967 TCTAAATAACTAGTCCCCACTGAC 57.213 41.667 0.00 0.00 33.62 3.51
3139 3314 9.574458 GCGTTCACATGTACATATCTTCTATAT 57.426 33.333 8.32 0.00 0.00 0.86
3140 3315 8.027189 GGCGTTCACATGTACATATCTTCTATA 58.973 37.037 8.32 0.00 0.00 1.31
3141 3316 6.868864 GGCGTTCACATGTACATATCTTCTAT 59.131 38.462 8.32 0.00 0.00 1.98
3142 3317 6.040504 AGGCGTTCACATGTACATATCTTCTA 59.959 38.462 8.32 0.00 0.00 2.10
3143 3318 5.050490 GGCGTTCACATGTACATATCTTCT 58.950 41.667 8.32 0.00 0.00 2.85
3144 3319 5.050490 AGGCGTTCACATGTACATATCTTC 58.950 41.667 8.32 0.00 0.00 2.87
3145 3320 4.811024 CAGGCGTTCACATGTACATATCTT 59.189 41.667 8.32 0.00 0.00 2.40
3146 3321 4.371786 CAGGCGTTCACATGTACATATCT 58.628 43.478 8.32 0.00 0.00 1.98
3147 3322 3.494626 CCAGGCGTTCACATGTACATATC 59.505 47.826 8.32 0.00 0.00 1.63
3148 3323 3.466836 CCAGGCGTTCACATGTACATAT 58.533 45.455 8.32 0.00 0.00 1.78
3149 3324 2.899976 CCAGGCGTTCACATGTACATA 58.100 47.619 8.32 0.00 0.00 2.29
3150 3325 1.737838 CCAGGCGTTCACATGTACAT 58.262 50.000 1.41 1.41 0.00 2.29
3151 3326 0.953471 GCCAGGCGTTCACATGTACA 60.953 55.000 0.00 0.00 0.00 2.90
3152 3327 0.953471 TGCCAGGCGTTCACATGTAC 60.953 55.000 7.03 0.00 0.00 2.90
3153 3328 0.250510 TTGCCAGGCGTTCACATGTA 60.251 50.000 7.03 0.00 0.00 2.29
3154 3329 1.106351 TTTGCCAGGCGTTCACATGT 61.106 50.000 7.03 0.00 0.00 3.21
3155 3330 0.664166 GTTTGCCAGGCGTTCACATG 60.664 55.000 7.03 0.00 0.00 3.21
3156 3331 0.823356 AGTTTGCCAGGCGTTCACAT 60.823 50.000 7.03 0.00 0.00 3.21
3157 3332 0.179043 TAGTTTGCCAGGCGTTCACA 60.179 50.000 7.03 0.00 0.00 3.58
3158 3333 1.165270 ATAGTTTGCCAGGCGTTCAC 58.835 50.000 7.03 0.22 0.00 3.18
3159 3334 2.772077 TATAGTTTGCCAGGCGTTCA 57.228 45.000 7.03 0.00 0.00 3.18
3160 3335 4.154195 CCATATATAGTTTGCCAGGCGTTC 59.846 45.833 7.03 0.00 0.00 3.95
3161 3336 4.072131 CCATATATAGTTTGCCAGGCGTT 58.928 43.478 7.03 0.00 0.00 4.84
3162 3337 3.326588 TCCATATATAGTTTGCCAGGCGT 59.673 43.478 7.03 0.00 0.00 5.68
3163 3338 3.684788 GTCCATATATAGTTTGCCAGGCG 59.315 47.826 7.03 0.00 0.00 5.52
3164 3339 4.010349 GGTCCATATATAGTTTGCCAGGC 58.990 47.826 3.66 3.66 0.00 4.85
3165 3340 4.289672 AGGGTCCATATATAGTTTGCCAGG 59.710 45.833 0.00 0.00 0.00 4.45
3166 3341 5.013079 TCAGGGTCCATATATAGTTTGCCAG 59.987 44.000 0.00 0.00 0.00 4.85
3167 3342 4.910913 TCAGGGTCCATATATAGTTTGCCA 59.089 41.667 0.00 0.00 0.00 4.92
3168 3343 5.499004 TCAGGGTCCATATATAGTTTGCC 57.501 43.478 0.00 0.00 0.00 4.52
3169 3344 8.322091 ACTTATCAGGGTCCATATATAGTTTGC 58.678 37.037 0.00 0.00 0.00 3.68
3170 3345 9.658799 CACTTATCAGGGTCCATATATAGTTTG 57.341 37.037 0.00 0.00 0.00 2.93
3171 3346 8.322091 GCACTTATCAGGGTCCATATATAGTTT 58.678 37.037 0.00 0.00 0.00 2.66
3172 3347 7.680310 AGCACTTATCAGGGTCCATATATAGTT 59.320 37.037 0.00 0.00 0.00 2.24
3173 3348 7.192628 AGCACTTATCAGGGTCCATATATAGT 58.807 38.462 0.00 0.00 0.00 2.12
3174 3349 7.667575 AGCACTTATCAGGGTCCATATATAG 57.332 40.000 0.00 0.00 0.00 1.31
3175 3350 7.563924 GGTAGCACTTATCAGGGTCCATATATA 59.436 40.741 0.00 0.00 0.00 0.86
3176 3351 6.384305 GGTAGCACTTATCAGGGTCCATATAT 59.616 42.308 0.00 0.00 0.00 0.86
3177 3352 5.720041 GGTAGCACTTATCAGGGTCCATATA 59.280 44.000 0.00 0.00 0.00 0.86
3178 3353 4.532521 GGTAGCACTTATCAGGGTCCATAT 59.467 45.833 0.00 0.00 0.00 1.78
3179 3354 3.901844 GGTAGCACTTATCAGGGTCCATA 59.098 47.826 0.00 0.00 0.00 2.74
3180 3355 2.706190 GGTAGCACTTATCAGGGTCCAT 59.294 50.000 0.00 0.00 0.00 3.41
3181 3356 2.116238 GGTAGCACTTATCAGGGTCCA 58.884 52.381 0.00 0.00 0.00 4.02
3182 3357 1.416772 GGGTAGCACTTATCAGGGTCC 59.583 57.143 0.00 0.00 0.00 4.46
3183 3358 1.068741 CGGGTAGCACTTATCAGGGTC 59.931 57.143 0.00 0.00 0.00 4.46
3184 3359 1.120530 CGGGTAGCACTTATCAGGGT 58.879 55.000 0.00 0.00 0.00 4.34
3185 3360 1.068741 GACGGGTAGCACTTATCAGGG 59.931 57.143 0.00 0.00 0.00 4.45
3186 3361 1.754803 TGACGGGTAGCACTTATCAGG 59.245 52.381 0.00 0.00 0.00 3.86
3187 3362 2.223829 CCTGACGGGTAGCACTTATCAG 60.224 54.545 0.00 0.00 33.45 2.90
3188 3363 1.754803 CCTGACGGGTAGCACTTATCA 59.245 52.381 0.00 0.00 0.00 2.15
3189 3364 2.510768 CCTGACGGGTAGCACTTATC 57.489 55.000 0.00 0.00 0.00 1.75
3200 3375 1.899437 ATGTGCTGGTACCTGACGGG 61.899 60.000 21.97 0.00 41.89 5.28
3201 3376 0.740868 CATGTGCTGGTACCTGACGG 60.741 60.000 21.97 9.61 0.00 4.79
3202 3377 0.740868 CCATGTGCTGGTACCTGACG 60.741 60.000 21.97 5.00 40.49 4.35
3203 3378 3.159298 CCATGTGCTGGTACCTGAC 57.841 57.895 21.97 15.93 40.49 3.51
3212 3387 1.236616 TTCGGAGTTGCCATGTGCTG 61.237 55.000 7.54 0.00 42.00 4.41
3213 3388 1.073025 TTCGGAGTTGCCATGTGCT 59.927 52.632 7.54 0.00 42.00 4.40
3214 3389 1.210155 GTTCGGAGTTGCCATGTGC 59.790 57.895 0.00 0.00 41.77 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.