>input_sequence_56860
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-------------------------ATGGACAAGATGGTGAAGCTGACATGCGTGCAGCTGCTCATGGTGGCCTTCCAGG
CTACGCTCATCACCATGTCATCTGCCGAATTGCCGTACGATTTCTACAGCTCGTCATGCCCGAAGGCCGAGGAAACAATC
AAGAATGTCGTCTACAACTTGACCGACGCCAACCCAAGTATTGCTGCGGCCTTAATTCGCCTGCACTTCCACGATTGCTT
TGTCATGGTACGTATCAAACTTATGGTTTTCATAAATATAACATTTCCTTCTTCCTTTCTTTCTTA----TTTTACTTTG
GGTTATGAACGTATATCC-A----ATATACCATCGCTTCAAG-ATGATATAATTTCCATTTATTTTTTTAATATTTTTTG
CGGGTGAATTTCCATTTATTAACATGACTGAAAATAGTTCTACAATGTCTACTACACTA--AACTTTTGAAATGTTTTTG
CGTTGAGCTAACAGCTTAATTTGGCCGTTGATATCATTAGGGTTGTGATGCCTCCATCCTTCTGAACTCCTCGAACGCCA
ACCCCCAGCCGGAAAAGTCAGCCATTCCCCTAGCTGGGTATGAGGCCGTCGACAAGATCAAGGCGGCCGTCGAGGCCGTG
TGTCCTTTGACGGTCTCCTGCGCCGACGTCCTTGCCTTCGCCGCACGCGACTCCGTCAGTAAATCCGCCGGCTTCTCCTA
CCACGTCCGCTCCGGGAGGCGCGACGGCAACGTGTCGAAAGCCTCCTCTGTCTTCACGAACATGCCGTCGCCTTTCTTCG
GAATCGAGGACCTCGTCGGCAGCTTCACCCGCAAGGGGCTTAATGTCGACGACCTCGTGGCTCTCTCCGGCGCGCACTCC
ATCGGTGTGGCGCATTGCTCCGGGTTCACTAACCGGCTGTACCCCGAGGTGGACCCGACGATGGACGCTGCATACGCCAC
GGACCTAAAGAAGACGTGCCCAGCGCCGGTGAGTGGTGCGCCGGACCCGGTGGTGAACAACAGCGCAGTGGCGCCGACAA
TGCTGAGCAATCAGTTCTTCAAGAACGCTGTCGCTAGGCGAGTGTTGTTCACGTCGGACGCGGCGCTGCTCACCCGCAAC
GACACTGCGGCGAAGGTGCAAGAAAACGCTGGCGACTCCTTGTTGTGGAAGGTGCGGTTTGCGGCATCGATGGTCAAGAT
GGGAAACATCGAGGTGCTTACAGGGACGAATGGGCAGGTCAGGAAGTTCTGTGGTGCCATAAACAGCTAA----------
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>chr7A_1_TraesCS7A01G056400
AATCCACCGATACTAGTACAGGCATGCAACTAATGCATGTCAACGCCAACACAGCG-------TTGAATGATTAGCTGTG
TTGCTCCCCATGTTCATGGACAA---AAACTGTCTAATATTCTTGTAATCATTGACCTCCAAATATTCCTCAAATCACCT
GATTTTTATTTAAATATCCAGACTGATTGCTACTCCCACCGTTCCAAAATAGATGACCCAATTTTGTATTAAATTTAGTA
CAAAGTTGAGTCATCTATTTTGAAACGAAGGGAGTAGTTACATACATGTAAATA--------AATACATCAAATTCATTG
CACATCAAAGGGTGTCTTTTGCTAAAAAAAAGAAGAAAC----ATGTCAGCATGATATTGTCCGGCGTGGGTTGTTTGTG
ATCTCCGAGGAGCGCTTTTGTGAAGTCATGTGATTAGCACAGCACAATTTTCAACTTGTGCGACCCAAGTTCACCTGCAA
GACAATTTTAAGACCGTGGGTGCAATTTACTCAGTTTTTAGCG-------------------------------------
--------ACTAATTCATATTTATGCGGGTATTCTTTAGTGTTTTAGCTAGCATTACAC---------------------
------------------------CGAGAAAACAAGTCAACTCAGTCCCAAATGATTAGGACAAACAAAGCAATAATTAA
------------------------------AGCACAACCGAAGTCGTTATAGGTCAAGTAGTTCAGATAAAACAACCATC
AAATTATATA-CATAGAAATCCATCGGTACTAGGATAGGCGTGCAATTGATGTCAACGCCTACACACCGCTGAATGATAG
GCTGTGTTGCTCCCCATGTTCACAGACAACAACTGGCTAATATTCTTGTGATTATTGACCT--CCAAATATTCCTCAAAT
CTGTTATGTTAATTTACATGTCCAAACTGATTGATCATTACATGCATCTGTAACCTGTACGTGTCTATAAATACATCTAA
TGTCTTGCATTTCACATCACATCATCTGCCGGCATACATTTTCTCAGGCACATTTGCCACCCATTTGATACCATCCCTTA
TTGTTTAGCCAAGAACTTCAGGAAGATGGACAAGATGGTGAAGCTGACATGCGTGCAGCTGCTCATGGTGGCCTTCCAGG
CTACGCTCATCACCATGTCATCTGCCGAATTGCCGTACGATTTCTACAGCTCGTCATGCCCGAAGGCCGAGGAAACAATC
AAGAATGTCGTCTACAACTTGACCGACGCCAACCCAAGTATTGCTGCGGCCTTAATTCGCCTGCACTTCCACGATTGCTT
TGTCATGGTACGTATCAAACTTATGGTTTTCATAAATATAACATTTCCTTCTTCCTTTCTTTCTTA----TTTTACTTTG
GGTTATGAACGTATATCC-A----ATATACCATCGCTTCAAG-ATGATATAATTTCCATTTATTTTTTTAATATTTTTTG
CGGGTGAATTTCCATTTATTAACATGACTGAAAATAGTTCTACAATGTCTACTACACTA--AACTTTTGAAATGTTTTTG
CGTTGAGCTAACAGCTTAATTTGGCCGTTGATATCATTAGGGTTGTGATGCCTCCATCCTTCTGAACTCCTCGAACGCCA
ACCCCCAGCCGGAAAAGTCAGCCATTCCCCTAGCTGGGTATGAGGCCGTCGACAAGATCAAGGCGGCCGTCGAGGCCGTG
TGTCCTTTGACGGTCTCCTGCGCCGACGTCCTTGCCTTCGCCGCACGCGACTCCGTCAGTAAATCCGCCGGCTTCTCCTA
CCACGTCCGCTCCGGGAGGCGCGACGGCAACGTGTCGAAAGCCTCCTCTGTCTTCACGAACATGCCGTCGCCTTTCTTCG
GAATCGAGGACCTCGTCGGCAGCTTCACCCGCAAGGGGCTTAATGTCGACGACCTCGTGGCTCTCTCCGGCGCGCACTCC
ATCGGTGTGGCGCATTGCTCCGGGTTCACTAACCGGCTGTACCCCGAGGTGGACCCGACGATGGACGCTGCATACGCCAC
GGACCTAAAGAAGACGTGCCCAGCGCCGGTGAGTGGTGCGCCGGACCCGGTGGTGAACAACAGCGCAGTGGCGCCGACAA
TGCTGAGCAATCAGTTCTTCAAGAACGCTGTCGCTAGGCGAGTGTTGTTCACGTCGGACGCGGCGCTGCTCACCCGCAAC
GACACTGCGGCGAAGGTGCAAGAAAACGCTGGCGACTCCTTGTTGTGGAAGGTGCGGTTTGCGGCATCGATGGTCAAGAT
GGGAAACATCGAGGTGCTTACAGGGACGAATGGGCAGGTCAGGAAGTTCTGTGGTGCCATAAACAGCTAAATTGTTAAGA
CACACTTAGATCTGGTGATTTTTCTTTTGTGCCTCATTTTGCACTACATTCAAGATTTCTCCTTGTCGCAGCCGGCCAGT
TACTGTGGTATTTTGGTTAGACGATTCACATGTAAAACTACTTTTCTGGTTTTTTGTAACCTCAA-GAACGAATTTTTAA
TTGGCTAGAAAAGGTGCACTTTTTT-AGTTGCCCTTGATTTCCTGCCTATTTGGATAAGTTCTTTCGAAATCCGCGAGTG
TGTTTGATACTTTGAATCTTATTTAACTGCTCCCTCCATCCATAATATAAGACGTTTTTTTACACTACACTAGTTTTTTT
TTAA-----ATATTATGGGACGGAGAGTACGTAGTACATAATCAAGTCTATGGAAGATT-----ATAGATAAACCATGGA
CGCGCCGTTGCTCACCTGCTGTGACATGCCAACGACCGTAGCTGAAAGCACTGCTGACTCAACGACGTGGAAGGTGTGGT
TTGTGGCGTCAATGGC----CAAGATGGTAAACATCAAGGTGCT-ACGGGGATGAAGCGGCAGGAAGTTCTGTCGTGACA
TAAACAGCTAAATCATAAAGACTCCCAAATTACTTTATACTAGATGGTGCCCCGCACGTTGTTGCGGGAATATTGTGCAA
TATATTTCAAAGATATTTGATTTTATGAAATATGAGTACTCGGAAAAATAATATGAGAGCTAAAACTATAAAATTACATA
TGCTTTATTGTGTTTGATTTTTTGTATTTTTATAAAATATTTATTAAATATCTCATGCATGTTTGCATGTTCGGGTGGAC
CATTTCCTATGACTCATTGAATGTTGAGGTGGGCCTTTTCTAATGCATGTTGCTTGATGAGGTATTATGCTTGCATGTTA
AGAGAAATAGGTCAGTGGGGACTAGTTATTTAGATATAGAAGATATGTACATGTGAACGCCTGGCAAACTATATATGGAC
CCTGATAAGTGCTACCCGTCAGGTACCAGCACATGGCAACTCCGAAC
>chr7D_1
AATCAACTGGTACTAGGACAGGCATGCAACTAATGCATGTCAACCAGTACGCCTACACAATATTTGAACGATTAGCTGTG
TTGCTCCCCATGTTCATAGACAAAAAAAACTGTTTAATATACTTGTGATTATTGA-CTCCAAATATTCCACAAATCCCTT
A--TTTTATTTATATTTCCTAATTGATT----------------------------------------------------
--------------------------------AGTAGTTACATACATCTGTCCTAAACTCCTAATACATCCAATACATTG
CACATCAAAGGTGTCTTTTCTTACAAAAGAAGAAGAAACGGACATGTCAGCACGA------------TGGGCTGCTTGTG
ATCTCCAAGGAAC-CTTTTGTGAAGTTGTGTGATTAGCACAACACAATTTTTAGCTTGTGCAACCCATGTTCACCTGCAA
GACAAGTTTTATGTATCTGGACACGTTTTATTGTTAGATACATTCGTATCTAGACAAATCTAAGATAAGAATTTGGGACC
GAGGTAATACTAATTTTTAGAGATGCGGGTATTCTAAAGTGTTTTAGCTAGCGTACAGTATGACTTAAGGAAACATCAAC
GAAAACTTCAAAATGCAGGGAGAACGAAAAAACAAGTGAATTTTGCTCCATATTATTAGGACAAAGAAAGCAGCAATTAA
TAATGAGCTTGCATGTATTAATAACAAAATAGCACAAAGGACGTCATTCTAGGTCAATTACTTCAATCATCACAACCGTC
AAATCATCTAGTATAGAAATTCACCTGCACTAGGATAGGCATGCAACTGATGTCAACGCCTACACAATTCCGAATGATTA
GCTGTGTTGCTACCCATGTTCATAGACAACAACCAGCTAATATTCTTGTGATAATTGACCT--CCAAATATTCCTCAAAT
CCCTTACGTCAATTTAAATGTCCAAGATGATTGATCCTTACATGCATCTGTAACCTGTACGTGTCTATAAATACATCCAA
-----TGCCTTGCACATCACATCATCTGCCGGCATACATTCTTTCAGGCACATTTTCCACCCATTTGATACTATCCCTTG
TTGTTTAGCGTAGAACTTCAGGAAGCTGGGCAAGATGGTGAAGCTGACATGCGTGCAGCTGCTCATGGTGGCCTTCCAGG
CTACGCTCATCACCATGTCATCTGCAGAATTGCCCTACAATTTCTACAGTTCGTCGTGCCCCAACGCCGAGGAAACAATC
AAGAATACCGTCTACAACTTGATCGACGGCAACCCAAGTATTGCTGCGGCCTTAATTCGCATGCACTTCCACGATTGCTT
TGTAATGGTACGTAATCAATTTCTGGTTTTCATAACTTTAACATTTCCTTCTTCCTTTCTTTCTTATTATTATTGCTTTG
TGTTATATATGAACATCCCA----ATATACCATTGCTTCAAG-ATGATATAATTTCCATTTATTA---------------
-------------------TAACATGACTGAAAATAGTTCTACAATGTCTACACTTAGTTTAACTTTTTATATGTTTTTG
CGTTGAGCTAACAACTT----TGGACGTTGATGTCACTAGGGTTGTGACGCTTCCATCCTTCTGGACTCCTCGAACTCCA
ACCCCCAGCCGGAAAAGTCAGCCATTCCCTTGGCTGGGTATGAGGCCGTCGACAAGATCAAGGCGGCCGTCGAGGCCGTG
TGTCCTTTGACGGTCTCCTGCGCCGATGTCCTCGCCTTCGCCGCACGCGACTCTGTCAGTAAATCCGCCGGTTTCTCCTA
CCACGTCCGCTCCGGGAGGCGTGACGGCAATGTGTCGAAAGCCTTCTCCGTCGTCACGAACATGCCGTCGCCTTTCTTCG
GAATCGAGGACCTTGTCGGCAGCTTCACCCGGAAGGGGCTCAATGTTGATGACCTCGTGGCTCTCTCTGGCGCGCACTCC
ATCGGTGTGGCACACTGCTCCGGCTTCACCAACCGGCTGTACCCTGAGGTGGACACGACAATGGACTCCGCATACGCCAC
AGACCTAAAGAAGACGTGCCCAGCACCGGTGCGTGGTGCGCCGGACCCGGTGGTGAACAACAGCGCGGTGGCGCCGACGA
CGCTGAGCAACCAGTTCTTCAAGAACGCTGTCGCTAGGCGAGTGTTGTTCACGTCGGACGCGGCGCTGCTCACCCGCAAC
GACACAGGGGCGAAGGTGCAGGAAAACGCTGCGGACTCCTTGTTGTGGAAGGTGCGGTTTGCGGCGTCGATGGTGAAGAT
GGGAAACATCGAAGTGCTTACAGGGACGAATGGGCAGGTCAGGAAGTTCTGCCGTACCATAAACAGCTAAATTGTTAAGA
CACACTTAGATTTGGTGATTTTTCTTATGTGCCTCATTTTGCACTGCATTCAAGATTTCTCCTTGTGACAGCCGGTCAGT
TACTGCGGTATTTTGGTTAGATGATTCACATGTAAAACTACTTTTCTGGTTTTTTGTAACCTCAAAGAACGAATTTTTAC
ATAGCTTGAAAAGGTGCGCTTTTTT-AATTGCCGTTGATTTCCTGTCTATTTGGATAAGTTCTTTCGAAGTCCGCGGGTG
TGTTTGATACTTTAAATCTTATTTAACTACTCCCTCCGTCCGTAATATAAGACGTTTTTTGACACTACACTAGTGTCAAA
AAACGTCTTATATTATAGGATGGAGGGA--GTAGTATATAATCAAGTATTGGAAGATTACTGAGATAGACAAACCATGGA
CACGCCGCTGCTCACCTGCTGTGACATGCCAGCGATTGTAGCTGAAAGCACTGCTGACTCAACGACGTGGAAGGTGTGGT
TTGCGGCGTCAATGCATGGTCAAGATGGTAAACATCGAGGTGCTCACGGGGATGAAGGGGCAGGAAGTTCTGTCATGCCA
TAAACAGCTAAATCATAAAGGCTCCCAAATTACTTTATATATATG-----------------------------------
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>chr4A_1
AATCCACCGATACTTGGACAGGCATGCAACTAATGCATGTCAATGCCAACATGGCG-------TTGAACGGTTAGCTGTG
TTGCTCCCCATGTTCATGGACAA---AAACTAGCTAATGTTCTTGTAATCATTGACCTCCAAATATTCCTCAAACCACCT
GCTTTTTATTTAAATATCCAAACTGATT----------------------------------------------------
--------------------------------ACTAGTTACATACATCTAAATA--------AATACATCAAATTCATTG
CACATCAAAGGGTTTCTTTTGCTAAAAAGAAGAAGAAAC----ATGTCAGCATGATATTGTCCGGCGTCGGCTGTTTTTG
ATCTCTGAGGAACGCTTTTGTGAAGTCGTGTGATTAGCACAACACAAATAGTC----GTGCGACGCATGTTCACCTGCAA
GACAAGATTAAGACCGCGGGTGCAATTTACTCAGATTTTAGCG-------------------------------------
--------ACTAATTCATATTTATGCGGGTATT----AGTATTTTAGCTAGCATTACAC---------------------
------------------------CGAGAAAACAAGTCAACTCAGTCCCAAATGATTAGGACAAACAAACCAATAATTAA
------------------------------AGCACAACCGGTGTCGTTATAGGTCAAGTAGGTCAGTTAAAACAACCCTC
AAAT--TATA-TATAGAAATCCACCGGTACCAGGATAGGCGTGCAATTGATGTCAACGCCTACACACCGTTGAACGATTG
GGTGTGTTGCTCCCCATGTTCATAGACAAGAACTGGCTAATATTCTTGTGATTATTGACCCCCCCAAATATTCCTCAAAT
CCCTTAC-TTAATTGAAATGTCCAAGCTGATTGATCATTGCATGCATCTGTAACATGTACGGCTCTATAAATACATCCAA
-----TGCCTTGCACATCACATCATCTGCCGGCATACATTCTTTCAGGCGCATTTGCCACCCATTTGATAATATCCCTTA
CTATTTAGCCAAGAACTTCAGGAAGATGGGCAAGATGGTGAAGCTGACATGCGTGCAGCTGCTCATGGTAGCCTTCCACG
CTACGCTCATCACCATGTCATCTGCAGAATTGCCCTACAATTTCTACAGTTCATCGTGCCCGAACGCCGAGGAAACAATC
AAGAATACCGTCTACAACTTGATCGATGGCAACCCAAGTATTGCTGCGGCCTTAATTCGCATGCATTTCCACGATTGCTT
TGTCATGGTACGTAATCAACTTCTAA-TTTCATAGATATAACATTTCCTTCTTATTTTACTTACGTT-------------
-------TATGGACATCCCAATATATATACCATTGCTTCAAATATGATTTAGTTTCCATTTAT-----------------
----------------------------TGAAAATAGTTCTACAATGTCTACACTTAGTTTAA-TTTTTATATGTTTTTG
CGTTGAGCTAACAACTT----TGGCCGTTGATGTCACTAGGGTTGTGACGCTTCCATCCTTCTGGACTCCTCGAACGCCA
ACCCCCAGCCGGAAAAGTCAGCCATTCCCTTGGCTGGGTATGAGGCCGTCGACAAGATCAAGGCGGCCGTCGAGGCTGTG
TGTCCTTTGACGGTCTCCTGCGCCGACATCCTCGCCTTCGCCGCACGCGACTCTGTCAGTAAATCTGCCGGTTTCTCCTA
CCACGTCCGCTCCGGTCGGCGTGACGGCAACGTGTCCAAAGCCTTCTCTGTCTTCACAAACATGCCTTCGCCTTTCTTTG
GAATCGAGGATCTCGTCAACAGCTTCACCAACAAGGGGCTCAACCTCGACGACCTGGTGGCTCTCTCCGGCGCGCACTCC
ATCGGTGTGGCGCACTGCTCCGGCTTCACCAACCGGCTGTACCCCGAGGTGGACACGACGATGGACGCTGCATACGCGAC
AGACTTAAAGAAGACGTGCCCACAGCCCGTGCACGGTGCGCCGGACCCGGTGGTGAACAACAGCGTTGTGGCGCCGGCGA
CGCTAAGCAACCAGTTCTTCAAGAACGTCGTTGCCAGGCGAGTGTTGTTCACGTCGGACGCGGCGCTGCTCACCCGCAAC
GACACGAGGGTGAAGGTTGAGGAAAGCGCTGCTGACTCCTTGTTGTGGAAGGTGCGGTTCGCGGCGTCGATGGTCAAGAT
GGGAAACATCAAGGTGCTCACGGGGACGAATGGGCAGGTCAGGAAGTTCTGCCGTGCCGTAAACAGCTAAATTGTTAAGA
GACACTTGGATTTGGTGATTTTTCTTCTGTGCCTCATTTTGCACTGCATTCAAGATTTCTCCTTGTGACAGCCGGTCAGT
TACTGTGGTATTTTGGTTAGATGATTCACATGTAAAACTACTTACCTGGTTTTTTGTAACCTCAAAGAACGATTTTTTAC
TTGGCCAGAAAAGGTGCACTTTTTTTAATTGCTGGTGATTTCCTGCCTATTTGGATAAGTTCTTTCTAAGTCCGCGGATG
TGTTTGATACTTTGAATCTTA-----------------------------------------------------------
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>SNPs
----------------S-----------------------------------S---------------S-----------
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-S------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--------------------------------
-------------S--------------S------------------------------------------S--------
-----------S---------------S-------------S---------S-S-------------S------------
-----S----------S---------------------------------------------------------------
-----------------------------------SS-------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S------------------------S----------S--
----S------S-----------S------------------------------------------------------S-
----------------------S---------------------------------------------------------
-SS---S---------S--------S---------------------------------------------------S--
SSSSS---S--S----------------------------S-S----------------------------S--------
-----------------------------S--------------------------------------------------
-------------------------S--------S---S----------S-----S--------S---------------
------SS--------------S-----S-------------------------------S-------------------
--------------SSS-----S------------------------------------------------S--S-----
S-----SS-S-S-S-------------------S------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------------------------------SSSSSSS---------S-S---------
-------------S---SSSS-----------S---S-----------S--S------------S---------------
-----------------------------S-S------------------------------------------------
--------------------------------S--------------------S-----------------S--------
---------------------S----------------------S-----------------------------------
----------------------------------------S---------------------------------------
--------------S--------S-----S------------------------S-------------------------
S------------------------------S----------------------------------S-----------S-
S---------S---------------------------------------------------------------------
-----S-S------------S----------SS--------------------------------S--------------
---------------------------------------------------SS---------------------------
-----------S--------------S------------------S--------------------SS-------S----
---------------------S---------------------------------------------------------S
---------------------------S-----S-----------------------------------S------S---
----------------------------S--------S---S------------------S-------------S-SSSS
SS-S------------S---S----S-SSS------S----------S-SS-S-SSS-S----------S----------
-S-----S-----------------------S---SS-------------------------------------------
---S----------SS--------------------S--------------------S----------------S--S--
--------------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_208
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----------------------------GCTACTCCCACCGTTCCAAA--------------------------------
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>reverse_1309
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----------------------------CCAACCCAAGTATTGCTGCG--------------------------------
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>forward_903
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---GTGTTGCTCCCCATGTTCAC---------------------------------------------------------
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>reverse_2588
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---------------------------GTTGCCCTTGATTTCCTGCC---------------------------------
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