Multiple sequence alignment - TraesCS7A01G041100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G041100 chr7A 100.000 2900 0 0 1 2900 19081654 19084553 0.000000e+00 5356
1 TraesCS7A01G041100 chr7D 91.679 2091 112 31 600 2636 18801324 18803406 0.000000e+00 2841
2 TraesCS7A01G041100 chr7D 83.626 342 48 6 250 585 18800997 18801336 6.030000e-82 315
3 TraesCS7A01G041100 chr7D 88.333 180 9 4 2722 2899 18803716 18803885 3.790000e-49 206
4 TraesCS7A01G041100 chr7D 80.769 208 32 3 2462 2661 579329656 579329863 3.870000e-34 156
5 TraesCS7A01G041100 chr4A 90.267 2096 145 30 606 2668 713950221 713948152 0.000000e+00 2686
6 TraesCS7A01G041100 chr4A 84.751 341 50 2 247 585 713950555 713950215 9.950000e-90 340
7 TraesCS7A01G041100 chr4A 91.617 167 13 1 2734 2899 713948138 713947972 2.250000e-56 230
8 TraesCS7A01G041100 chr2D 83.030 165 20 4 2736 2899 112552197 112552354 3.010000e-30 143
9 TraesCS7A01G041100 chr6A 79.426 209 33 6 2470 2669 454090565 454090772 3.900000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G041100 chr7A 19081654 19084553 2899 False 5356.000000 5356 100.000000 1 2900 1 chr7A.!!$F1 2899
1 TraesCS7A01G041100 chr7D 18800997 18803885 2888 False 1120.666667 2841 87.879333 250 2899 3 chr7D.!!$F2 2649
2 TraesCS7A01G041100 chr4A 713947972 713950555 2583 True 1085.333333 2686 88.878333 247 2899 3 chr4A.!!$R1 2652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.038159 CCACCACACCTTCGAGAGAC 60.038 60.0 0.0 0.0 41.84 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2088 0.256177 TAACACACAGCACAACCCCA 59.744 50.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.826601 TTTTCCCCTTTGCATTTTTGTTC 57.173 34.783 0.00 0.00 0.00 3.18
38 39 3.483808 TCCCCTTTGCATTTTTGTTCC 57.516 42.857 0.00 0.00 0.00 3.62
39 40 2.774234 TCCCCTTTGCATTTTTGTTCCA 59.226 40.909 0.00 0.00 0.00 3.53
40 41 3.200825 TCCCCTTTGCATTTTTGTTCCAA 59.799 39.130 0.00 0.00 0.00 3.53
41 42 4.141298 TCCCCTTTGCATTTTTGTTCCAAT 60.141 37.500 0.00 0.00 0.00 3.16
42 43 4.583907 CCCCTTTGCATTTTTGTTCCAATT 59.416 37.500 0.00 0.00 0.00 2.32
43 44 5.507650 CCCCTTTGCATTTTTGTTCCAATTG 60.508 40.000 0.00 0.00 0.00 2.32
44 45 5.507650 CCCTTTGCATTTTTGTTCCAATTGG 60.508 40.000 19.08 19.08 0.00 3.16
45 46 5.507650 CCTTTGCATTTTTGTTCCAATTGGG 60.508 40.000 24.29 5.96 35.41 4.12
46 47 4.162040 TGCATTTTTGTTCCAATTGGGT 57.838 36.364 24.29 0.00 38.11 4.51
47 48 4.133078 TGCATTTTTGTTCCAATTGGGTC 58.867 39.130 24.29 16.78 38.11 4.46
48 49 4.141528 TGCATTTTTGTTCCAATTGGGTCT 60.142 37.500 24.29 0.00 38.11 3.85
49 50 4.213906 GCATTTTTGTTCCAATTGGGTCTG 59.786 41.667 24.29 11.59 38.11 3.51
50 51 5.367302 CATTTTTGTTCCAATTGGGTCTGT 58.633 37.500 24.29 1.16 38.11 3.41
51 52 5.428184 TTTTTGTTCCAATTGGGTCTGTT 57.572 34.783 24.29 0.00 38.11 3.16
52 53 4.664150 TTTGTTCCAATTGGGTCTGTTC 57.336 40.909 24.29 7.79 38.11 3.18
53 54 2.226330 TGTTCCAATTGGGTCTGTTCG 58.774 47.619 24.29 0.00 38.11 3.95
54 55 2.158740 TGTTCCAATTGGGTCTGTTCGA 60.159 45.455 24.29 0.00 38.11 3.71
55 56 2.178912 TCCAATTGGGTCTGTTCGAC 57.821 50.000 24.29 0.00 42.07 4.20
56 57 1.418264 TCCAATTGGGTCTGTTCGACA 59.582 47.619 24.29 0.00 44.68 4.35
57 58 2.039746 TCCAATTGGGTCTGTTCGACAT 59.960 45.455 24.29 0.00 44.68 3.06
58 59 2.819608 CCAATTGGGTCTGTTCGACATT 59.180 45.455 17.36 0.00 44.68 2.71
59 60 3.366273 CCAATTGGGTCTGTTCGACATTG 60.366 47.826 17.36 0.00 44.68 2.82
60 61 2.920724 TTGGGTCTGTTCGACATTGA 57.079 45.000 0.00 0.00 44.68 2.57
61 62 3.417069 TTGGGTCTGTTCGACATTGAT 57.583 42.857 0.00 0.00 44.68 2.57
62 63 2.698803 TGGGTCTGTTCGACATTGATG 58.301 47.619 0.00 0.00 44.68 3.07
63 64 1.398390 GGGTCTGTTCGACATTGATGC 59.602 52.381 0.00 0.00 44.68 3.91
64 65 1.061131 GGTCTGTTCGACATTGATGCG 59.939 52.381 0.00 0.00 44.68 4.73
65 66 1.061131 GTCTGTTCGACATTGATGCGG 59.939 52.381 0.00 0.00 42.37 5.69
66 67 1.067213 TCTGTTCGACATTGATGCGGA 60.067 47.619 0.00 0.00 0.00 5.54
67 68 1.325640 CTGTTCGACATTGATGCGGAG 59.674 52.381 0.00 0.00 0.00 4.63
68 69 1.337728 TGTTCGACATTGATGCGGAGT 60.338 47.619 0.00 0.00 0.00 3.85
69 70 1.324736 GTTCGACATTGATGCGGAGTC 59.675 52.381 0.00 0.00 0.00 3.36
70 71 1.920051 CGACATTGATGCGGAGTCG 59.080 57.895 1.60 1.60 44.64 4.18
71 72 3.345737 GACATTGATGCGGAGTCGA 57.654 52.632 0.00 0.00 39.00 4.20
72 73 0.924090 GACATTGATGCGGAGTCGAC 59.076 55.000 7.70 7.70 39.00 4.20
73 74 0.460284 ACATTGATGCGGAGTCGACC 60.460 55.000 13.01 3.55 39.00 4.79
74 75 0.460109 CATTGATGCGGAGTCGACCA 60.460 55.000 13.01 2.98 39.00 4.02
75 76 0.179100 ATTGATGCGGAGTCGACCAG 60.179 55.000 13.01 5.00 39.00 4.00
76 77 2.105128 GATGCGGAGTCGACCAGG 59.895 66.667 13.01 2.22 39.00 4.45
77 78 3.432051 GATGCGGAGTCGACCAGGG 62.432 68.421 13.01 0.24 39.00 4.45
80 81 3.141488 CGGAGTCGACCAGGGGAG 61.141 72.222 13.01 0.00 39.00 4.30
81 82 2.359404 GGAGTCGACCAGGGGAGA 59.641 66.667 13.01 0.00 0.00 3.71
82 83 2.053277 GGAGTCGACCAGGGGAGAC 61.053 68.421 13.01 7.17 35.49 3.36
83 84 1.000646 GAGTCGACCAGGGGAGACT 60.001 63.158 13.01 14.83 42.71 3.24
84 85 1.000646 AGTCGACCAGGGGAGACTC 60.001 63.158 13.01 0.00 38.80 3.36
86 87 1.033202 GTCGACCAGGGGAGACTCTC 61.033 65.000 3.51 0.00 34.38 3.20
87 88 1.755008 CGACCAGGGGAGACTCTCC 60.755 68.421 14.13 14.13 34.38 3.71
96 97 1.199615 GGAGACTCTCCCCTTTCAGG 58.800 60.000 13.65 0.00 44.36 3.86
97 98 0.539518 GAGACTCTCCCCTTTCAGGC 59.460 60.000 0.00 0.00 32.73 4.85
98 99 0.118144 AGACTCTCCCCTTTCAGGCT 59.882 55.000 0.00 0.00 32.73 4.58
99 100 0.539518 GACTCTCCCCTTTCAGGCTC 59.460 60.000 0.00 0.00 32.73 4.70
100 101 0.912006 ACTCTCCCCTTTCAGGCTCC 60.912 60.000 0.00 0.00 32.73 4.70
101 102 1.616628 TCTCCCCTTTCAGGCTCCC 60.617 63.158 0.00 0.00 32.73 4.30
102 103 1.617839 CTCCCCTTTCAGGCTCCCT 60.618 63.158 0.00 0.00 32.73 4.20
103 104 1.616628 TCCCCTTTCAGGCTCCCTC 60.617 63.158 0.00 0.00 32.73 4.30
104 105 2.684499 CCCCTTTCAGGCTCCCTCC 61.684 68.421 0.00 0.00 32.73 4.30
105 106 1.925455 CCCTTTCAGGCTCCCTCCA 60.925 63.158 0.00 0.00 32.73 3.86
106 107 1.301293 CCTTTCAGGCTCCCTCCAC 59.699 63.158 0.00 0.00 0.00 4.02
107 108 1.301293 CTTTCAGGCTCCCTCCACC 59.699 63.158 0.00 0.00 0.00 4.61
108 109 1.463214 TTTCAGGCTCCCTCCACCA 60.463 57.895 0.00 0.00 0.00 4.17
109 110 1.779061 TTTCAGGCTCCCTCCACCAC 61.779 60.000 0.00 0.00 0.00 4.16
110 111 2.930019 CAGGCTCCCTCCACCACA 60.930 66.667 0.00 0.00 0.00 4.17
111 112 2.930562 AGGCTCCCTCCACCACAC 60.931 66.667 0.00 0.00 0.00 3.82
112 113 4.035102 GGCTCCCTCCACCACACC 62.035 72.222 0.00 0.00 0.00 4.16
113 114 2.930562 GCTCCCTCCACCACACCT 60.931 66.667 0.00 0.00 0.00 4.00
114 115 2.529744 GCTCCCTCCACCACACCTT 61.530 63.158 0.00 0.00 0.00 3.50
115 116 1.679898 CTCCCTCCACCACACCTTC 59.320 63.158 0.00 0.00 0.00 3.46
116 117 2.172483 CTCCCTCCACCACACCTTCG 62.172 65.000 0.00 0.00 0.00 3.79
117 118 2.214216 CCCTCCACCACACCTTCGA 61.214 63.158 0.00 0.00 0.00 3.71
118 119 1.293498 CCTCCACCACACCTTCGAG 59.707 63.158 0.00 0.00 0.00 4.04
119 120 1.185618 CCTCCACCACACCTTCGAGA 61.186 60.000 0.00 0.00 0.00 4.04
120 121 0.244994 CTCCACCACACCTTCGAGAG 59.755 60.000 0.00 0.00 0.00 3.20
121 122 0.178973 TCCACCACACCTTCGAGAGA 60.179 55.000 0.00 0.00 39.20 3.10
122 123 0.038159 CCACCACACCTTCGAGAGAC 60.038 60.000 0.00 0.00 41.84 3.36
123 124 0.673985 CACCACACCTTCGAGAGACA 59.326 55.000 0.00 0.00 41.84 3.41
124 125 0.962489 ACCACACCTTCGAGAGACAG 59.038 55.000 0.00 0.00 41.84 3.51
125 126 1.248486 CCACACCTTCGAGAGACAGA 58.752 55.000 0.00 0.00 41.84 3.41
126 127 1.821753 CCACACCTTCGAGAGACAGAT 59.178 52.381 0.00 0.00 41.84 2.90
127 128 2.159310 CCACACCTTCGAGAGACAGATC 60.159 54.545 0.00 0.00 41.84 2.75
128 129 2.752354 CACACCTTCGAGAGACAGATCT 59.248 50.000 0.00 0.00 41.84 2.75
129 130 2.752354 ACACCTTCGAGAGACAGATCTG 59.248 50.000 21.37 21.37 41.84 2.90
130 131 2.098934 CACCTTCGAGAGACAGATCTGG 59.901 54.545 26.08 7.80 41.84 3.86
131 132 1.066908 CCTTCGAGAGACAGATCTGGC 59.933 57.143 26.08 24.11 41.84 4.85
132 133 1.747924 CTTCGAGAGACAGATCTGGCA 59.252 52.381 30.08 6.37 42.32 4.92
133 134 1.839424 TCGAGAGACAGATCTGGCAA 58.161 50.000 30.08 7.38 42.32 4.52
134 135 1.474478 TCGAGAGACAGATCTGGCAAC 59.526 52.381 30.08 21.84 42.32 4.17
135 136 1.470632 CGAGAGACAGATCTGGCAACC 60.471 57.143 30.08 17.78 42.32 3.77
136 137 0.908198 AGAGACAGATCTGGCAACCC 59.092 55.000 30.08 15.38 42.32 4.11
137 138 0.460987 GAGACAGATCTGGCAACCCG 60.461 60.000 30.08 0.81 42.32 5.28
138 139 0.904865 AGACAGATCTGGCAACCCGA 60.905 55.000 30.08 0.00 42.32 5.14
139 140 0.460987 GACAGATCTGGCAACCCGAG 60.461 60.000 24.24 0.00 38.82 4.63
140 141 1.817099 CAGATCTGGCAACCCGAGC 60.817 63.158 15.38 0.00 0.00 5.03
141 142 2.892425 GATCTGGCAACCCGAGCG 60.892 66.667 0.00 0.00 0.00 5.03
142 143 4.473520 ATCTGGCAACCCGAGCGG 62.474 66.667 1.06 1.06 37.81 5.52
157 158 3.560251 CGGGCCGGGATCCTGATT 61.560 66.667 23.02 0.00 31.56 2.57
158 159 2.113986 GGGCCGGGATCCTGATTG 59.886 66.667 23.02 6.55 0.00 2.67
159 160 2.595754 GGCCGGGATCCTGATTGC 60.596 66.667 23.02 16.23 0.00 3.56
160 161 2.974698 GCCGGGATCCTGATTGCG 60.975 66.667 23.02 10.45 0.00 4.85
161 162 2.281070 CCGGGATCCTGATTGCGG 60.281 66.667 23.02 15.88 0.00 5.69
162 163 2.281070 CGGGATCCTGATTGCGGG 60.281 66.667 16.28 0.00 42.30 6.13
163 164 2.113986 GGGATCCTGATTGCGGGG 59.886 66.667 12.58 0.00 41.20 5.73
164 165 2.757124 GGGATCCTGATTGCGGGGT 61.757 63.158 12.58 0.00 41.20 4.95
165 166 1.415672 GGGATCCTGATTGCGGGGTA 61.416 60.000 12.58 0.00 41.20 3.69
166 167 0.472471 GGATCCTGATTGCGGGGTAA 59.528 55.000 3.84 0.00 41.20 2.85
167 168 1.543429 GGATCCTGATTGCGGGGTAAG 60.543 57.143 3.84 0.00 41.20 2.34
168 169 0.474184 ATCCTGATTGCGGGGTAAGG 59.526 55.000 0.00 0.00 41.20 2.69
169 170 0.912487 TCCTGATTGCGGGGTAAGGT 60.912 55.000 0.00 0.00 41.20 3.50
170 171 0.748005 CCTGATTGCGGGGTAAGGTG 60.748 60.000 0.00 0.00 36.87 4.00
171 172 0.748005 CTGATTGCGGGGTAAGGTGG 60.748 60.000 0.00 0.00 0.00 4.61
172 173 1.453197 GATTGCGGGGTAAGGTGGG 60.453 63.158 0.00 0.00 0.00 4.61
173 174 2.206182 GATTGCGGGGTAAGGTGGGT 62.206 60.000 0.00 0.00 0.00 4.51
174 175 2.493273 ATTGCGGGGTAAGGTGGGTG 62.493 60.000 0.00 0.00 0.00 4.61
175 176 4.419921 GCGGGGTAAGGTGGGTGG 62.420 72.222 0.00 0.00 0.00 4.61
176 177 3.723922 CGGGGTAAGGTGGGTGGG 61.724 72.222 0.00 0.00 0.00 4.61
177 178 3.344176 GGGGTAAGGTGGGTGGGG 61.344 72.222 0.00 0.00 0.00 4.96
178 179 3.344176 GGGTAAGGTGGGTGGGGG 61.344 72.222 0.00 0.00 0.00 5.40
193 194 3.668886 GGGGGAGGGTAACATAGGT 57.331 57.895 0.00 0.00 39.74 3.08
194 195 2.801282 GGGGGAGGGTAACATAGGTA 57.199 55.000 0.00 0.00 39.74 3.08
195 196 3.064773 GGGGGAGGGTAACATAGGTAA 57.935 52.381 0.00 0.00 39.74 2.85
196 197 2.977580 GGGGGAGGGTAACATAGGTAAG 59.022 54.545 0.00 0.00 39.74 2.34
197 198 2.977580 GGGGAGGGTAACATAGGTAAGG 59.022 54.545 0.00 0.00 39.74 2.69
198 199 3.375654 GGGGAGGGTAACATAGGTAAGGA 60.376 52.174 0.00 0.00 39.74 3.36
199 200 3.902467 GGGAGGGTAACATAGGTAAGGAG 59.098 52.174 0.00 0.00 39.74 3.69
200 201 3.902467 GGAGGGTAACATAGGTAAGGAGG 59.098 52.174 0.00 0.00 39.74 4.30
201 202 3.315596 AGGGTAACATAGGTAAGGAGGC 58.684 50.000 0.00 0.00 39.74 4.70
202 203 2.371179 GGGTAACATAGGTAAGGAGGCC 59.629 54.545 0.00 0.00 39.74 5.19
203 204 2.036862 GGTAACATAGGTAAGGAGGCCG 59.963 54.545 0.00 0.00 0.00 6.13
204 205 1.129058 AACATAGGTAAGGAGGCCGG 58.871 55.000 0.00 0.00 0.00 6.13
205 206 0.263765 ACATAGGTAAGGAGGCCGGA 59.736 55.000 5.05 0.00 0.00 5.14
206 207 0.969894 CATAGGTAAGGAGGCCGGAG 59.030 60.000 5.05 0.00 0.00 4.63
207 208 0.858369 ATAGGTAAGGAGGCCGGAGA 59.142 55.000 5.05 0.00 0.00 3.71
208 209 0.632835 TAGGTAAGGAGGCCGGAGAA 59.367 55.000 5.05 0.00 0.00 2.87
209 210 0.976590 AGGTAAGGAGGCCGGAGAAC 60.977 60.000 5.05 0.00 0.00 3.01
210 211 0.976590 GGTAAGGAGGCCGGAGAACT 60.977 60.000 5.05 0.00 0.00 3.01
211 212 0.175989 GTAAGGAGGCCGGAGAACTG 59.824 60.000 5.05 0.00 0.00 3.16
212 213 0.040646 TAAGGAGGCCGGAGAACTGA 59.959 55.000 5.05 0.00 0.00 3.41
213 214 1.261238 AAGGAGGCCGGAGAACTGAG 61.261 60.000 5.05 0.00 0.00 3.35
214 215 2.185608 GAGGCCGGAGAACTGAGC 59.814 66.667 5.05 0.00 0.00 4.26
215 216 2.604686 AGGCCGGAGAACTGAGCA 60.605 61.111 5.05 0.00 0.00 4.26
216 217 2.125350 GGCCGGAGAACTGAGCAG 60.125 66.667 5.05 0.00 0.00 4.24
217 218 2.817396 GCCGGAGAACTGAGCAGC 60.817 66.667 5.05 0.00 0.00 5.25
218 219 2.125350 CCGGAGAACTGAGCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
219 220 2.654079 CCGGAGAACTGAGCAGCCT 61.654 63.158 0.00 0.00 0.00 4.58
220 221 1.323271 CCGGAGAACTGAGCAGCCTA 61.323 60.000 0.00 0.00 0.00 3.93
221 222 0.179124 CGGAGAACTGAGCAGCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
222 223 0.179124 GGAGAACTGAGCAGCCTACG 60.179 60.000 0.00 0.00 0.00 3.51
223 224 0.804156 GAGAACTGAGCAGCCTACGC 60.804 60.000 0.00 0.00 0.00 4.42
224 225 2.125912 AACTGAGCAGCCTACGCG 60.126 61.111 3.53 3.53 41.18 6.01
225 226 2.543687 GAACTGAGCAGCCTACGCGA 62.544 60.000 15.93 0.00 41.18 5.87
226 227 2.580867 CTGAGCAGCCTACGCGAC 60.581 66.667 15.93 0.00 41.18 5.19
227 228 3.057547 CTGAGCAGCCTACGCGACT 62.058 63.158 15.93 0.71 41.18 4.18
228 229 1.715862 CTGAGCAGCCTACGCGACTA 61.716 60.000 15.93 0.00 41.18 2.59
229 230 1.009449 GAGCAGCCTACGCGACTAG 60.009 63.158 15.93 4.67 41.18 2.57
230 231 1.437772 GAGCAGCCTACGCGACTAGA 61.438 60.000 15.93 0.00 41.18 2.43
231 232 1.009449 GCAGCCTACGCGACTAGAG 60.009 63.158 15.93 1.15 41.18 2.43
232 233 1.437772 GCAGCCTACGCGACTAGAGA 61.438 60.000 15.93 0.00 41.18 3.10
233 234 0.584396 CAGCCTACGCGACTAGAGAG 59.416 60.000 15.93 0.00 41.18 3.20
234 235 0.464870 AGCCTACGCGACTAGAGAGA 59.535 55.000 15.93 0.00 41.18 3.10
235 236 1.071071 AGCCTACGCGACTAGAGAGAT 59.929 52.381 15.93 0.00 41.18 2.75
236 237 1.874872 GCCTACGCGACTAGAGAGATT 59.125 52.381 15.93 0.00 0.00 2.40
237 238 3.065655 GCCTACGCGACTAGAGAGATTA 58.934 50.000 15.93 0.00 0.00 1.75
238 239 3.497640 GCCTACGCGACTAGAGAGATTAA 59.502 47.826 15.93 0.00 0.00 1.40
239 240 4.611130 GCCTACGCGACTAGAGAGATTAAC 60.611 50.000 15.93 0.00 0.00 2.01
240 241 3.589061 ACGCGACTAGAGAGATTAACG 57.411 47.619 15.93 0.00 0.00 3.18
241 242 2.287373 ACGCGACTAGAGAGATTAACGG 59.713 50.000 15.93 0.00 0.00 4.44
242 243 2.652795 GCGACTAGAGAGATTAACGGC 58.347 52.381 0.00 0.00 0.00 5.68
243 244 2.033049 GCGACTAGAGAGATTAACGGCA 59.967 50.000 0.00 0.00 0.00 5.69
244 245 3.619729 CGACTAGAGAGATTAACGGCAC 58.380 50.000 0.00 0.00 0.00 5.01
245 246 3.548415 CGACTAGAGAGATTAACGGCACC 60.548 52.174 0.00 0.00 0.00 5.01
284 285 4.697756 CCCGGCGACCAAAGCTCA 62.698 66.667 9.30 0.00 34.52 4.26
285 286 3.121030 CCGGCGACCAAAGCTCAG 61.121 66.667 9.30 0.00 34.52 3.35
290 291 1.571460 CGACCAAAGCTCAGTGCAC 59.429 57.895 9.40 9.40 45.94 4.57
296 297 2.608970 AAAGCTCAGTGCACCGGTGT 62.609 55.000 33.92 13.66 45.94 4.16
304 305 4.778143 GCACCGGTGTAGGGCAGG 62.778 72.222 33.92 7.46 35.02 4.85
327 330 0.608308 GCCTTACCACCACCTTCACC 60.608 60.000 0.00 0.00 0.00 4.02
358 361 2.125310 CAGTTGGCGGCGTCCATA 60.125 61.111 20.53 10.93 35.77 2.74
371 374 4.169696 CCATAAGTGGCGGCGGGA 62.170 66.667 9.78 0.00 39.01 5.14
383 386 2.446802 GCGGGAAGGGAGGGAGAT 60.447 66.667 0.00 0.00 0.00 2.75
388 393 0.766288 GGAAGGGAGGGAGATGAGGG 60.766 65.000 0.00 0.00 0.00 4.30
421 426 2.186125 CTAGGGTTTCGTCGCCCC 59.814 66.667 3.06 4.84 45.95 5.80
422 427 3.711541 CTAGGGTTTCGTCGCCCCG 62.712 68.421 3.06 0.00 45.95 5.73
424 429 4.685467 GGGTTTCGTCGCCCCGAA 62.685 66.667 1.33 1.33 44.43 4.30
425 430 2.435410 GGTTTCGTCGCCCCGAAT 60.435 61.111 6.00 0.00 45.32 3.34
469 474 1.365699 GCGATGGTTCGGCTTTCTTA 58.634 50.000 0.00 0.00 45.59 2.10
481 486 2.737252 GGCTTTCTTACTCACTGTTCCG 59.263 50.000 0.00 0.00 0.00 4.30
482 487 2.157863 GCTTTCTTACTCACTGTTCCGC 59.842 50.000 0.00 0.00 0.00 5.54
484 489 0.242825 TCTTACTCACTGTTCCGCGG 59.757 55.000 22.12 22.12 0.00 6.46
497 502 2.649331 TCCGCGGAACTCTTTAGAAG 57.351 50.000 28.99 0.00 0.00 2.85
529 534 4.915704 TGTTTTCATGAGGTTTCGTTGTC 58.084 39.130 0.00 0.00 0.00 3.18
532 537 2.143122 TCATGAGGTTTCGTTGTCTGC 58.857 47.619 0.00 0.00 0.00 4.26
559 564 2.932614 GAGGTTTCATCGTGATGACAGG 59.067 50.000 11.91 0.00 46.49 4.00
560 565 1.398390 GGTTTCATCGTGATGACAGGC 59.602 52.381 11.91 3.55 46.49 4.85
561 566 2.076100 GTTTCATCGTGATGACAGGCA 58.924 47.619 11.91 0.00 46.49 4.75
578 583 0.106967 GCATCTTCTCCCCAACTCCC 60.107 60.000 0.00 0.00 0.00 4.30
579 584 1.589414 CATCTTCTCCCCAACTCCCT 58.411 55.000 0.00 0.00 0.00 4.20
580 585 1.211457 CATCTTCTCCCCAACTCCCTG 59.789 57.143 0.00 0.00 0.00 4.45
581 586 0.193574 TCTTCTCCCCAACTCCCTGT 59.806 55.000 0.00 0.00 0.00 4.00
582 587 1.435563 TCTTCTCCCCAACTCCCTGTA 59.564 52.381 0.00 0.00 0.00 2.74
583 588 1.834263 CTTCTCCCCAACTCCCTGTAG 59.166 57.143 0.00 0.00 0.00 2.74
584 589 1.089978 TCTCCCCAACTCCCTGTAGA 58.910 55.000 0.00 0.00 0.00 2.59
585 590 1.196012 CTCCCCAACTCCCTGTAGAC 58.804 60.000 0.00 0.00 0.00 2.59
586 591 0.490017 TCCCCAACTCCCTGTAGACA 59.510 55.000 0.00 0.00 0.00 3.41
587 592 1.132657 TCCCCAACTCCCTGTAGACAA 60.133 52.381 0.00 0.00 0.00 3.18
588 593 1.702957 CCCCAACTCCCTGTAGACAAA 59.297 52.381 0.00 0.00 0.00 2.83
589 594 2.107552 CCCCAACTCCCTGTAGACAAAA 59.892 50.000 0.00 0.00 0.00 2.44
590 595 3.435890 CCCCAACTCCCTGTAGACAAAAA 60.436 47.826 0.00 0.00 0.00 1.94
646 651 3.932289 GTCCACCAGACACGAACG 58.068 61.111 0.00 0.00 45.55 3.95
666 671 3.387050 ACGACACCCAAGAAAAGTCTACT 59.613 43.478 0.00 0.00 32.16 2.57
667 672 4.586001 ACGACACCCAAGAAAAGTCTACTA 59.414 41.667 0.00 0.00 32.16 1.82
668 673 4.922103 CGACACCCAAGAAAAGTCTACTAC 59.078 45.833 0.00 0.00 32.16 2.73
669 674 5.278858 CGACACCCAAGAAAAGTCTACTACT 60.279 44.000 0.00 0.00 41.49 2.57
685 690 6.089685 GTCTACTACTTCCTTCGCAGAAAAAG 59.910 42.308 0.00 9.46 45.90 2.27
705 710 4.625607 AGAAGGGAAAAGTCTTCGTGAT 57.374 40.909 0.00 0.00 42.85 3.06
709 714 4.974399 AGGGAAAAGTCTTCGTGATTTCT 58.026 39.130 0.00 0.00 32.14 2.52
714 721 6.090223 GGAAAAGTCTTCGTGATTTCTCTCTC 59.910 42.308 0.00 0.00 32.14 3.20
716 723 7.455641 AAAGTCTTCGTGATTTCTCTCTCTA 57.544 36.000 0.00 0.00 0.00 2.43
717 724 7.639113 AAGTCTTCGTGATTTCTCTCTCTAT 57.361 36.000 0.00 0.00 0.00 1.98
719 726 6.826231 AGTCTTCGTGATTTCTCTCTCTATCA 59.174 38.462 0.00 0.00 0.00 2.15
721 728 6.826231 TCTTCGTGATTTCTCTCTCTATCAGT 59.174 38.462 0.00 0.00 0.00 3.41
729 736 4.447290 TCTCTCTCTATCAGTGTTCTCCG 58.553 47.826 0.00 0.00 0.00 4.63
738 745 0.318445 AGTGTTCTCCGTGCACGTAC 60.318 55.000 34.81 25.33 38.10 3.67
954 968 2.955660 CCTTCTTAACCAACACCAAGCA 59.044 45.455 0.00 0.00 0.00 3.91
957 971 5.407407 TTCTTAACCAACACCAAGCAAAA 57.593 34.783 0.00 0.00 0.00 2.44
965 979 3.665745 ACACCAAGCAAAATAGGCAAG 57.334 42.857 0.00 0.00 0.00 4.01
974 988 3.084039 CAAAATAGGCAAGCCAGAGTCA 58.916 45.455 14.40 0.00 38.92 3.41
978 992 0.475906 AGGCAAGCCAGAGTCAAGTT 59.524 50.000 14.40 0.00 38.92 2.66
986 1000 0.734253 CAGAGTCAAGTTCTCGGGCG 60.734 60.000 0.00 0.00 37.07 6.13
988 1002 2.357034 GTCAAGTTCTCGGGCGCA 60.357 61.111 10.83 0.00 0.00 6.09
1056 1072 1.079127 CGACATCACCTGGGTGTCC 60.079 63.158 17.87 6.54 45.55 4.02
1116 1132 1.749638 CCTCTACGCCTCCGTCTGT 60.750 63.158 0.00 0.00 46.39 3.41
1117 1133 1.716826 CCTCTACGCCTCCGTCTGTC 61.717 65.000 0.00 0.00 46.39 3.51
1246 1271 4.180946 CCGACGACGCCTCAGAGG 62.181 72.222 12.81 12.81 38.80 3.69
1248 1273 2.486042 GACGACGCCTCAGAGGAC 59.514 66.667 21.89 10.52 37.67 3.85
1429 1454 1.687493 GTCTCCTACCAGCTGGCCT 60.687 63.158 33.06 17.08 39.32 5.19
1473 1498 1.066587 CGGCGTCATCTCCTTCTCC 59.933 63.158 0.00 0.00 0.00 3.71
1663 1691 2.827423 TTTACCCGCCGGTGAACA 59.173 55.556 18.79 0.00 44.40 3.18
1664 1692 1.147824 TTTACCCGCCGGTGAACAA 59.852 52.632 18.79 3.70 44.40 2.83
1917 1975 2.237542 AAACCTCGGTTTCCACCCT 58.762 52.632 8.22 0.00 43.95 4.34
1920 1978 1.350310 ACCTCGGTTTCCACCCTTGT 61.350 55.000 0.00 0.00 40.52 3.16
1967 2025 1.399343 GCCGACGGCTTGTACTTTTTC 60.399 52.381 31.30 0.00 46.69 2.29
1992 2050 1.614996 AAATTCACGTGGTGATGCCA 58.385 45.000 17.00 0.00 42.40 4.92
2005 2085 2.111669 TGCCAGTGCACCAGTGAG 59.888 61.111 14.63 1.31 44.23 3.51
2008 2088 2.429058 CAGTGCACCAGTGAGGCT 59.571 61.111 14.63 0.00 43.14 4.58
2098 2178 7.984002 TTGTGAAATTTGTGTATGTTGTCAG 57.016 32.000 0.00 0.00 0.00 3.51
2246 2327 5.105146 ACTCTCCACGAAAAATCTAGCATCT 60.105 40.000 0.00 0.00 0.00 2.90
2331 2418 0.321346 CATCAACTGGTTTTGGGCCC 59.679 55.000 17.59 17.59 0.00 5.80
2397 2488 2.605257 AGTATACTTAGGCGCCATGGA 58.395 47.619 31.54 15.30 0.00 3.41
2432 2523 7.122138 AGTTCAGCATCATAAATCTCTCAGA 57.878 36.000 0.00 0.00 0.00 3.27
2489 2580 2.084546 GGAAAACGCTATGGTTCAGCT 58.915 47.619 0.00 0.00 36.86 4.24
2505 2596 0.253044 AGCTGGCGGATAACACACAT 59.747 50.000 0.00 0.00 0.00 3.21
2528 2619 1.677552 CCTGGCACCTCCTACGTTT 59.322 57.895 0.00 0.00 35.26 3.60
2529 2620 0.673644 CCTGGCACCTCCTACGTTTG 60.674 60.000 0.00 0.00 35.26 2.93
2577 2668 4.222847 CTCCGCCTCCTTACGCCC 62.223 72.222 0.00 0.00 0.00 6.13
2622 2713 4.357947 GCACACGTCCGAGCTCCA 62.358 66.667 8.47 0.00 0.00 3.86
2627 2718 3.827898 CGTCCGAGCTCCACTCCC 61.828 72.222 8.47 0.00 43.01 4.30
2639 2730 4.101448 ACTCCCGCCACCATCTGC 62.101 66.667 0.00 0.00 0.00 4.26
2640 2731 4.864334 CTCCCGCCACCATCTGCC 62.864 72.222 0.00 0.00 0.00 4.85
2647 2738 1.379916 CCACCATCTGCCCAGTTGA 59.620 57.895 7.70 0.00 31.50 3.18
2650 2741 1.751927 CCATCTGCCCAGTTGAGCC 60.752 63.158 7.70 0.00 31.50 4.70
2664 2755 2.604686 AGCCGCTCCAGACTTCCA 60.605 61.111 0.00 0.00 0.00 3.53
2676 3052 3.885297 CCAGACTTCCATCTCTCTCTCTC 59.115 52.174 0.00 0.00 0.00 3.20
2677 3053 4.385643 CCAGACTTCCATCTCTCTCTCTCT 60.386 50.000 0.00 0.00 0.00 3.10
2678 3054 4.818546 CAGACTTCCATCTCTCTCTCTCTC 59.181 50.000 0.00 0.00 0.00 3.20
2679 3055 4.723789 AGACTTCCATCTCTCTCTCTCTCT 59.276 45.833 0.00 0.00 0.00 3.10
2680 3056 5.041191 ACTTCCATCTCTCTCTCTCTCTC 57.959 47.826 0.00 0.00 0.00 3.20
2681 3057 4.723789 ACTTCCATCTCTCTCTCTCTCTCT 59.276 45.833 0.00 0.00 0.00 3.10
2682 3058 4.963318 TCCATCTCTCTCTCTCTCTCTC 57.037 50.000 0.00 0.00 0.00 3.20
2683 3059 4.560739 TCCATCTCTCTCTCTCTCTCTCT 58.439 47.826 0.00 0.00 0.00 3.10
2684 3060 4.590647 TCCATCTCTCTCTCTCTCTCTCTC 59.409 50.000 0.00 0.00 0.00 3.20
2685 3061 4.592351 CCATCTCTCTCTCTCTCTCTCTCT 59.408 50.000 0.00 0.00 0.00 3.10
2686 3062 5.279406 CCATCTCTCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
2687 3063 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2688 3064 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2689 3065 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2690 3066 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2691 3067 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2692 3068 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2693 3069 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2694 3070 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2695 3071 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2696 3072 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2697 3073 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2698 3074 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2699 3075 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2700 3076 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2701 3077 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2702 3078 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2703 3079 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2704 3080 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2705 3081 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2706 3082 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2707 3083 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2708 3084 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2709 3085 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2710 3086 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2711 3087 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2712 3088 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2713 3089 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2714 3090 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2715 3091 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2716 3092 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2717 3093 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2718 3094 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2719 3095 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2720 3096 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2721 3097 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2722 3098 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2723 3099 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2724 3100 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2725 3101 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2726 3102 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2727 3103 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2728 3104 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2729 3105 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2730 3106 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
2731 3107 5.960811 TCTCTCTCTCTCTCTCTCTCTCTTT 59.039 44.000 0.00 0.00 0.00 2.52
2732 3108 5.982356 TCTCTCTCTCTCTCTCTCTCTTTG 58.018 45.833 0.00 0.00 0.00 2.77
2836 3213 5.088739 GCATAACTTTCTTGATTCACACCG 58.911 41.667 0.00 0.00 0.00 4.94
2837 3214 3.626028 AACTTTCTTGATTCACACCGC 57.374 42.857 0.00 0.00 0.00 5.68
2839 3216 2.290641 ACTTTCTTGATTCACACCGCAC 59.709 45.455 0.00 0.00 0.00 5.34
2843 3220 1.536766 CTTGATTCACACCGCACATGT 59.463 47.619 0.00 0.00 0.00 3.21
2857 3234 5.163723 ACCGCACATGTTATCATCTTTTCAG 60.164 40.000 0.00 0.00 31.15 3.02
2863 3241 9.681692 CACATGTTATCATCTTTTCAGTGAAAA 57.318 29.630 25.48 25.48 35.02 2.29
2877 3255 6.831727 TCAGTGAAAAATTTCTGCAACATG 57.168 33.333 7.36 0.00 38.02 3.21
2899 3277 5.634118 TGATTCATGTTCCAAAAGTCCTCT 58.366 37.500 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.642437 GGAACAAAAATGCAAAGGGGAAAA 59.358 37.500 0.00 0.00 0.00 2.29
17 18 3.200825 TGGAACAAAAATGCAAAGGGGAA 59.799 39.130 0.00 0.00 31.92 3.97
18 19 2.774234 TGGAACAAAAATGCAAAGGGGA 59.226 40.909 0.00 0.00 31.92 4.81
19 20 3.205784 TGGAACAAAAATGCAAAGGGG 57.794 42.857 0.00 0.00 31.92 4.79
29 30 9.911784 GTCGAACAGACCCAATTGGAACAAAAA 62.912 40.741 26.60 0.71 44.03 1.94
30 31 8.554858 GTCGAACAGACCCAATTGGAACAAAA 62.555 42.308 26.60 0.00 44.03 2.44
31 32 7.169863 GTCGAACAGACCCAATTGGAACAAA 62.170 44.000 26.60 0.00 44.03 2.83
32 33 5.753354 GTCGAACAGACCCAATTGGAACAA 61.753 45.833 26.60 0.00 44.03 2.83
33 34 2.158740 TCGAACAGACCCAATTGGAACA 60.159 45.455 26.60 0.00 37.39 3.18
34 35 2.225727 GTCGAACAGACCCAATTGGAAC 59.774 50.000 26.60 17.73 43.95 3.62
35 36 2.500229 GTCGAACAGACCCAATTGGAA 58.500 47.619 26.60 0.00 43.95 3.53
36 37 2.178912 GTCGAACAGACCCAATTGGA 57.821 50.000 26.60 0.00 43.95 3.53
46 47 1.067213 TCCGCATCAATGTCGAACAGA 60.067 47.619 0.00 0.00 32.02 3.41
47 48 1.325640 CTCCGCATCAATGTCGAACAG 59.674 52.381 0.00 0.00 32.02 3.16
48 49 1.337728 ACTCCGCATCAATGTCGAACA 60.338 47.619 0.00 0.00 32.02 3.18
49 50 1.324736 GACTCCGCATCAATGTCGAAC 59.675 52.381 0.00 0.00 32.02 3.95
50 51 1.640428 GACTCCGCATCAATGTCGAA 58.360 50.000 0.00 0.00 32.02 3.71
51 52 3.345737 GACTCCGCATCAATGTCGA 57.654 52.632 7.92 0.00 32.02 4.20
52 53 1.920051 CGACTCCGCATCAATGTCG 59.080 57.895 0.00 0.00 43.03 4.35
53 54 0.924090 GTCGACTCCGCATCAATGTC 59.076 55.000 8.70 0.00 35.37 3.06
54 55 0.460284 GGTCGACTCCGCATCAATGT 60.460 55.000 16.46 0.00 35.37 2.71
55 56 0.460109 TGGTCGACTCCGCATCAATG 60.460 55.000 16.46 0.00 35.37 2.82
56 57 0.179100 CTGGTCGACTCCGCATCAAT 60.179 55.000 16.46 0.00 35.37 2.57
57 58 1.215382 CTGGTCGACTCCGCATCAA 59.785 57.895 16.46 0.00 35.37 2.57
58 59 2.710902 CCTGGTCGACTCCGCATCA 61.711 63.158 16.46 1.75 35.37 3.07
59 60 2.105128 CCTGGTCGACTCCGCATC 59.895 66.667 16.46 0.00 35.37 3.91
60 61 3.461773 CCCTGGTCGACTCCGCAT 61.462 66.667 16.46 0.00 35.37 4.73
63 64 3.141488 CTCCCCTGGTCGACTCCG 61.141 72.222 16.46 4.00 37.07 4.63
64 65 2.053277 GTCTCCCCTGGTCGACTCC 61.053 68.421 16.46 0.00 0.00 3.85
65 66 1.000646 AGTCTCCCCTGGTCGACTC 60.001 63.158 16.46 6.30 32.49 3.36
66 67 1.000646 GAGTCTCCCCTGGTCGACT 60.001 63.158 16.46 8.83 37.30 4.18
67 68 1.000646 AGAGTCTCCCCTGGTCGAC 60.001 63.158 7.13 7.13 0.00 4.20
68 69 1.303615 GAGAGTCTCCCCTGGTCGA 59.696 63.158 9.15 0.00 0.00 4.20
69 70 1.755008 GGAGAGTCTCCCCTGGTCG 60.755 68.421 26.55 0.00 44.36 4.79
70 71 4.366159 GGAGAGTCTCCCCTGGTC 57.634 66.667 26.55 1.26 44.36 4.02
89 90 1.301293 GGTGGAGGGAGCCTGAAAG 59.699 63.158 0.00 0.00 31.76 2.62
90 91 1.463214 TGGTGGAGGGAGCCTGAAA 60.463 57.895 0.00 0.00 31.76 2.69
91 92 2.206900 TGGTGGAGGGAGCCTGAA 59.793 61.111 0.00 0.00 31.76 3.02
92 93 2.607750 GTGGTGGAGGGAGCCTGA 60.608 66.667 0.00 0.00 31.76 3.86
93 94 2.930019 TGTGGTGGAGGGAGCCTG 60.930 66.667 0.00 0.00 31.76 4.85
94 95 2.930562 GTGTGGTGGAGGGAGCCT 60.931 66.667 0.00 0.00 36.03 4.58
95 96 4.035102 GGTGTGGTGGAGGGAGCC 62.035 72.222 0.00 0.00 0.00 4.70
96 97 2.470938 GAAGGTGTGGTGGAGGGAGC 62.471 65.000 0.00 0.00 0.00 4.70
97 98 1.679898 GAAGGTGTGGTGGAGGGAG 59.320 63.158 0.00 0.00 0.00 4.30
98 99 2.214216 CGAAGGTGTGGTGGAGGGA 61.214 63.158 0.00 0.00 0.00 4.20
99 100 2.172483 CTCGAAGGTGTGGTGGAGGG 62.172 65.000 0.00 0.00 0.00 4.30
100 101 1.185618 TCTCGAAGGTGTGGTGGAGG 61.186 60.000 0.00 0.00 0.00 4.30
101 102 0.244994 CTCTCGAAGGTGTGGTGGAG 59.755 60.000 0.00 0.00 0.00 3.86
102 103 0.178973 TCTCTCGAAGGTGTGGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
103 104 0.038159 GTCTCTCGAAGGTGTGGTGG 60.038 60.000 0.00 0.00 0.00 4.61
104 105 0.673985 TGTCTCTCGAAGGTGTGGTG 59.326 55.000 0.00 0.00 0.00 4.17
105 106 0.962489 CTGTCTCTCGAAGGTGTGGT 59.038 55.000 0.00 0.00 0.00 4.16
106 107 1.248486 TCTGTCTCTCGAAGGTGTGG 58.752 55.000 0.00 0.00 0.00 4.17
107 108 2.752354 AGATCTGTCTCTCGAAGGTGTG 59.248 50.000 0.00 0.00 0.00 3.82
108 109 2.752354 CAGATCTGTCTCTCGAAGGTGT 59.248 50.000 14.95 0.00 30.42 4.16
109 110 2.098934 CCAGATCTGTCTCTCGAAGGTG 59.901 54.545 21.11 0.00 30.42 4.00
110 111 2.374184 CCAGATCTGTCTCTCGAAGGT 58.626 52.381 21.11 0.00 30.42 3.50
111 112 1.066908 GCCAGATCTGTCTCTCGAAGG 59.933 57.143 21.11 3.11 30.42 3.46
112 113 1.747924 TGCCAGATCTGTCTCTCGAAG 59.252 52.381 21.11 3.90 30.42 3.79
113 114 1.839424 TGCCAGATCTGTCTCTCGAA 58.161 50.000 21.11 0.00 30.42 3.71
114 115 1.474478 GTTGCCAGATCTGTCTCTCGA 59.526 52.381 21.11 2.65 30.42 4.04
115 116 1.470632 GGTTGCCAGATCTGTCTCTCG 60.471 57.143 21.11 6.04 30.42 4.04
116 117 1.134551 GGGTTGCCAGATCTGTCTCTC 60.135 57.143 21.11 7.82 30.42 3.20
117 118 0.908198 GGGTTGCCAGATCTGTCTCT 59.092 55.000 21.11 0.00 30.42 3.10
118 119 0.460987 CGGGTTGCCAGATCTGTCTC 60.461 60.000 21.11 10.35 30.42 3.36
119 120 0.904865 TCGGGTTGCCAGATCTGTCT 60.905 55.000 21.11 0.00 34.14 3.41
120 121 0.460987 CTCGGGTTGCCAGATCTGTC 60.461 60.000 21.11 9.59 0.00 3.51
121 122 1.599047 CTCGGGTTGCCAGATCTGT 59.401 57.895 21.11 0.00 0.00 3.41
122 123 1.817099 GCTCGGGTTGCCAGATCTG 60.817 63.158 16.24 16.24 0.00 2.90
123 124 2.586792 GCTCGGGTTGCCAGATCT 59.413 61.111 0.00 0.00 0.00 2.75
124 125 2.892425 CGCTCGGGTTGCCAGATC 60.892 66.667 0.00 0.00 0.00 2.75
125 126 4.473520 CCGCTCGGGTTGCCAGAT 62.474 66.667 0.00 0.00 0.00 2.90
140 141 3.560251 AATCAGGATCCCGGCCCG 61.560 66.667 8.55 0.00 0.00 6.13
141 142 2.113986 CAATCAGGATCCCGGCCC 59.886 66.667 8.55 0.00 0.00 5.80
142 143 2.595754 GCAATCAGGATCCCGGCC 60.596 66.667 8.55 0.00 0.00 6.13
143 144 2.974698 CGCAATCAGGATCCCGGC 60.975 66.667 8.55 4.40 0.00 6.13
144 145 2.281070 CCGCAATCAGGATCCCGG 60.281 66.667 8.55 9.40 0.00 5.73
145 146 2.281070 CCCGCAATCAGGATCCCG 60.281 66.667 8.55 3.26 0.00 5.14
146 147 1.415672 TACCCCGCAATCAGGATCCC 61.416 60.000 8.55 0.00 0.00 3.85
147 148 0.472471 TTACCCCGCAATCAGGATCC 59.528 55.000 2.48 2.48 0.00 3.36
148 149 1.543429 CCTTACCCCGCAATCAGGATC 60.543 57.143 0.00 0.00 0.00 3.36
149 150 0.474184 CCTTACCCCGCAATCAGGAT 59.526 55.000 0.00 0.00 0.00 3.24
150 151 0.912487 ACCTTACCCCGCAATCAGGA 60.912 55.000 0.00 0.00 0.00 3.86
151 152 0.748005 CACCTTACCCCGCAATCAGG 60.748 60.000 0.00 0.00 0.00 3.86
152 153 0.748005 CCACCTTACCCCGCAATCAG 60.748 60.000 0.00 0.00 0.00 2.90
153 154 1.301623 CCACCTTACCCCGCAATCA 59.698 57.895 0.00 0.00 0.00 2.57
154 155 1.453197 CCCACCTTACCCCGCAATC 60.453 63.158 0.00 0.00 0.00 2.67
155 156 2.235761 ACCCACCTTACCCCGCAAT 61.236 57.895 0.00 0.00 0.00 3.56
156 157 2.855014 ACCCACCTTACCCCGCAA 60.855 61.111 0.00 0.00 0.00 4.85
157 158 3.642503 CACCCACCTTACCCCGCA 61.643 66.667 0.00 0.00 0.00 5.69
158 159 4.419921 CCACCCACCTTACCCCGC 62.420 72.222 0.00 0.00 0.00 6.13
159 160 3.723922 CCCACCCACCTTACCCCG 61.724 72.222 0.00 0.00 0.00 5.73
160 161 3.344176 CCCCACCCACCTTACCCC 61.344 72.222 0.00 0.00 0.00 4.95
161 162 3.344176 CCCCCACCCACCTTACCC 61.344 72.222 0.00 0.00 0.00 3.69
175 176 2.801282 TACCTATGTTACCCTCCCCC 57.199 55.000 0.00 0.00 0.00 5.40
176 177 2.977580 CCTTACCTATGTTACCCTCCCC 59.022 54.545 0.00 0.00 0.00 4.81
177 178 3.902467 CTCCTTACCTATGTTACCCTCCC 59.098 52.174 0.00 0.00 0.00 4.30
178 179 3.902467 CCTCCTTACCTATGTTACCCTCC 59.098 52.174 0.00 0.00 0.00 4.30
179 180 3.324268 GCCTCCTTACCTATGTTACCCTC 59.676 52.174 0.00 0.00 0.00 4.30
180 181 3.315596 GCCTCCTTACCTATGTTACCCT 58.684 50.000 0.00 0.00 0.00 4.34
181 182 2.371179 GGCCTCCTTACCTATGTTACCC 59.629 54.545 0.00 0.00 0.00 3.69
182 183 2.036862 CGGCCTCCTTACCTATGTTACC 59.963 54.545 0.00 0.00 0.00 2.85
183 184 2.036862 CCGGCCTCCTTACCTATGTTAC 59.963 54.545 0.00 0.00 0.00 2.50
184 185 2.091166 TCCGGCCTCCTTACCTATGTTA 60.091 50.000 0.00 0.00 0.00 2.41
185 186 1.129058 CCGGCCTCCTTACCTATGTT 58.871 55.000 0.00 0.00 0.00 2.71
186 187 0.263765 TCCGGCCTCCTTACCTATGT 59.736 55.000 0.00 0.00 0.00 2.29
187 188 0.969894 CTCCGGCCTCCTTACCTATG 59.030 60.000 0.00 0.00 0.00 2.23
188 189 0.858369 TCTCCGGCCTCCTTACCTAT 59.142 55.000 0.00 0.00 0.00 2.57
189 190 0.632835 TTCTCCGGCCTCCTTACCTA 59.367 55.000 0.00 0.00 0.00 3.08
190 191 0.976590 GTTCTCCGGCCTCCTTACCT 60.977 60.000 0.00 0.00 0.00 3.08
191 192 0.976590 AGTTCTCCGGCCTCCTTACC 60.977 60.000 0.00 0.00 0.00 2.85
192 193 0.175989 CAGTTCTCCGGCCTCCTTAC 59.824 60.000 0.00 0.00 0.00 2.34
193 194 0.040646 TCAGTTCTCCGGCCTCCTTA 59.959 55.000 0.00 0.00 0.00 2.69
194 195 1.229209 TCAGTTCTCCGGCCTCCTT 60.229 57.895 0.00 0.00 0.00 3.36
195 196 1.684049 CTCAGTTCTCCGGCCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
196 197 2.896443 CTCAGTTCTCCGGCCTCC 59.104 66.667 0.00 0.00 0.00 4.30
197 198 2.185608 GCTCAGTTCTCCGGCCTC 59.814 66.667 0.00 0.00 0.00 4.70
198 199 2.604686 TGCTCAGTTCTCCGGCCT 60.605 61.111 0.00 0.00 0.00 5.19
199 200 2.125350 CTGCTCAGTTCTCCGGCC 60.125 66.667 0.00 0.00 0.00 6.13
200 201 2.817396 GCTGCTCAGTTCTCCGGC 60.817 66.667 0.00 0.00 0.00 6.13
201 202 1.323271 TAGGCTGCTCAGTTCTCCGG 61.323 60.000 0.00 0.00 0.00 5.14
202 203 0.179124 GTAGGCTGCTCAGTTCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
203 204 0.179124 CGTAGGCTGCTCAGTTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
204 205 0.804156 GCGTAGGCTGCTCAGTTCTC 60.804 60.000 0.00 0.00 35.83 2.87
205 206 1.216710 GCGTAGGCTGCTCAGTTCT 59.783 57.895 0.00 0.50 35.83 3.01
206 207 2.161486 CGCGTAGGCTGCTCAGTTC 61.161 63.158 5.78 0.00 36.88 3.01
207 208 2.125912 CGCGTAGGCTGCTCAGTT 60.126 61.111 5.78 0.00 36.88 3.16
208 209 3.062466 TCGCGTAGGCTGCTCAGT 61.062 61.111 5.77 0.00 36.88 3.41
209 210 1.715862 TAGTCGCGTAGGCTGCTCAG 61.716 60.000 5.77 0.00 35.65 3.35
210 211 1.715862 CTAGTCGCGTAGGCTGCTCA 61.716 60.000 5.77 0.00 35.65 4.26
211 212 1.009449 CTAGTCGCGTAGGCTGCTC 60.009 63.158 5.77 0.00 35.65 4.26
212 213 1.440938 CTCTAGTCGCGTAGGCTGCT 61.441 60.000 5.77 5.92 35.65 4.24
213 214 1.009449 CTCTAGTCGCGTAGGCTGC 60.009 63.158 5.77 0.00 35.65 5.25
214 215 0.584396 CTCTCTAGTCGCGTAGGCTG 59.416 60.000 5.77 0.00 35.65 4.85
215 216 0.464870 TCTCTCTAGTCGCGTAGGCT 59.535 55.000 5.77 3.23 38.92 4.58
216 217 1.515081 ATCTCTCTAGTCGCGTAGGC 58.485 55.000 5.77 0.00 0.00 3.93
217 218 4.376210 CGTTAATCTCTCTAGTCGCGTAGG 60.376 50.000 5.77 0.00 0.00 3.18
218 219 4.376210 CCGTTAATCTCTCTAGTCGCGTAG 60.376 50.000 5.77 0.95 0.00 3.51
219 220 3.492383 CCGTTAATCTCTCTAGTCGCGTA 59.508 47.826 5.77 0.00 0.00 4.42
220 221 2.287373 CCGTTAATCTCTCTAGTCGCGT 59.713 50.000 5.77 0.00 0.00 6.01
221 222 2.906153 CCGTTAATCTCTCTAGTCGCG 58.094 52.381 0.00 0.00 0.00 5.87
222 223 2.033049 TGCCGTTAATCTCTCTAGTCGC 59.967 50.000 0.00 0.00 0.00 5.19
223 224 3.548415 GGTGCCGTTAATCTCTCTAGTCG 60.548 52.174 0.00 0.00 0.00 4.18
224 225 3.380637 TGGTGCCGTTAATCTCTCTAGTC 59.619 47.826 0.00 0.00 0.00 2.59
225 226 3.362706 TGGTGCCGTTAATCTCTCTAGT 58.637 45.455 0.00 0.00 0.00 2.57
226 227 3.797184 GCTGGTGCCGTTAATCTCTCTAG 60.797 52.174 0.00 0.00 0.00 2.43
227 228 2.100916 GCTGGTGCCGTTAATCTCTCTA 59.899 50.000 0.00 0.00 0.00 2.43
228 229 1.134670 GCTGGTGCCGTTAATCTCTCT 60.135 52.381 0.00 0.00 0.00 3.10
229 230 1.291132 GCTGGTGCCGTTAATCTCTC 58.709 55.000 0.00 0.00 0.00 3.20
230 231 3.460648 GCTGGTGCCGTTAATCTCT 57.539 52.632 0.00 0.00 0.00 3.10
281 282 1.079819 CCTACACCGGTGCACTGAG 60.080 63.158 34.26 21.21 0.00 3.35
284 285 4.016706 GCCCTACACCGGTGCACT 62.017 66.667 34.26 17.88 0.00 4.40
285 286 4.323477 TGCCCTACACCGGTGCAC 62.323 66.667 34.26 18.64 0.00 4.57
290 291 2.363795 TCTCCTGCCCTACACCGG 60.364 66.667 0.00 0.00 0.00 5.28
304 305 0.984995 AAGGTGGTGGTAAGGCTCTC 59.015 55.000 0.00 0.00 0.00 3.20
344 347 1.743623 CACTTATGGACGCCGCCAA 60.744 57.895 4.46 0.00 42.16 4.52
345 348 2.125310 CACTTATGGACGCCGCCA 60.125 61.111 2.87 2.87 43.23 5.69
356 359 2.189521 CTTCCCGCCGCCACTTAT 59.810 61.111 0.00 0.00 0.00 1.73
371 374 1.319799 CCCCTCATCTCCCTCCCTT 59.680 63.158 0.00 0.00 0.00 3.95
469 474 3.134879 TTCCGCGGAACAGTGAGT 58.865 55.556 35.81 0.00 0.00 3.41
481 486 1.654602 GACGCTTCTAAAGAGTTCCGC 59.345 52.381 0.00 0.00 41.75 5.54
482 487 2.662156 GTGACGCTTCTAAAGAGTTCCG 59.338 50.000 0.00 0.00 41.75 4.30
484 489 6.531948 ACATATGTGACGCTTCTAAAGAGTTC 59.468 38.462 7.78 0.00 41.75 3.01
497 502 4.094887 ACCTCATGAAAACATATGTGACGC 59.905 41.667 9.63 0.45 0.00 5.19
529 534 3.070018 ACGATGAAACCTCAAGAAGCAG 58.930 45.455 0.00 0.00 34.49 4.24
532 537 4.931601 TCATCACGATGAAACCTCAAGAAG 59.068 41.667 7.26 0.00 44.14 2.85
559 564 0.106967 GGGAGTTGGGGAGAAGATGC 60.107 60.000 0.00 0.00 0.00 3.91
560 565 1.211457 CAGGGAGTTGGGGAGAAGATG 59.789 57.143 0.00 0.00 0.00 2.90
561 566 1.203492 ACAGGGAGTTGGGGAGAAGAT 60.203 52.381 0.00 0.00 0.00 2.40
566 571 1.196012 GTCTACAGGGAGTTGGGGAG 58.804 60.000 0.00 0.00 0.00 4.30
596 601 6.205658 GCAGTGGAAATCTACAGAGAGTTTTT 59.794 38.462 0.00 0.00 40.02 1.94
597 602 5.703130 GCAGTGGAAATCTACAGAGAGTTTT 59.297 40.000 0.00 0.00 40.02 2.43
598 603 5.221722 TGCAGTGGAAATCTACAGAGAGTTT 60.222 40.000 0.00 0.00 40.02 2.66
599 604 4.284490 TGCAGTGGAAATCTACAGAGAGTT 59.716 41.667 0.00 0.00 42.54 3.01
600 605 3.834813 TGCAGTGGAAATCTACAGAGAGT 59.165 43.478 0.00 0.00 34.35 3.24
601 606 4.081752 ACTGCAGTGGAAATCTACAGAGAG 60.082 45.833 20.97 0.00 34.35 3.20
602 607 3.834813 ACTGCAGTGGAAATCTACAGAGA 59.165 43.478 20.97 0.00 32.49 3.10
603 608 4.199432 ACTGCAGTGGAAATCTACAGAG 57.801 45.455 20.97 0.00 32.49 3.35
604 609 4.284490 AGAACTGCAGTGGAAATCTACAGA 59.716 41.667 22.49 0.00 32.49 3.41
644 649 3.387050 AGTAGACTTTTCTTGGGTGTCGT 59.613 43.478 0.00 0.00 32.75 4.34
645 650 3.991367 AGTAGACTTTTCTTGGGTGTCG 58.009 45.455 0.00 0.00 32.75 4.35
646 651 6.099159 AGTAGTAGACTTTTCTTGGGTGTC 57.901 41.667 0.00 0.00 33.13 3.67
666 671 5.924475 CTTCTTTTTCTGCGAAGGAAGTA 57.076 39.130 0.00 0.00 32.55 2.24
667 672 4.820284 CTTCTTTTTCTGCGAAGGAAGT 57.180 40.909 0.00 0.00 32.55 3.01
685 690 5.470437 AGAAATCACGAAGACTTTTCCCTTC 59.530 40.000 0.00 0.00 36.38 3.46
705 710 5.355630 CGGAGAACACTGATAGAGAGAGAAA 59.644 44.000 0.00 0.00 0.00 2.52
709 714 3.942115 CACGGAGAACACTGATAGAGAGA 59.058 47.826 0.00 0.00 0.00 3.10
714 721 2.263077 GTGCACGGAGAACACTGATAG 58.737 52.381 0.00 0.00 34.94 2.08
716 723 0.667487 CGTGCACGGAGAACACTGAT 60.667 55.000 31.15 0.00 35.44 2.90
717 724 1.299850 CGTGCACGGAGAACACTGA 60.300 57.895 31.15 0.00 35.44 3.41
719 726 0.318445 GTACGTGCACGGAGAACACT 60.318 55.000 39.21 20.48 44.95 3.55
721 728 1.007038 GGTACGTGCACGGAGAACA 60.007 57.895 39.21 16.41 44.95 3.18
729 736 1.301423 TTGTGGAAAGGTACGTGCAC 58.699 50.000 6.82 6.82 39.26 4.57
738 745 7.588512 CAACTTCTTCTTCTATTGTGGAAAGG 58.411 38.462 0.00 0.00 0.00 3.11
881 890 2.490685 GGAGGAAGTCCGAGCGAC 59.509 66.667 0.00 0.00 42.08 5.19
926 940 0.398696 TTGGTTAAGAAGGCGCTGGA 59.601 50.000 7.64 0.00 0.00 3.86
932 946 2.288213 GCTTGGTGTTGGTTAAGAAGGC 60.288 50.000 0.00 0.00 0.00 4.35
954 968 3.439857 TGACTCTGGCTTGCCTATTTT 57.560 42.857 13.18 0.00 0.00 1.82
957 971 1.912043 ACTTGACTCTGGCTTGCCTAT 59.088 47.619 13.18 0.00 0.00 2.57
965 979 0.390472 CCCGAGAACTTGACTCTGGC 60.390 60.000 0.00 0.00 33.51 4.85
974 988 3.986006 TCGTGCGCCCGAGAACTT 61.986 61.111 11.89 0.00 32.18 2.66
986 1000 3.869272 CCATCGGCAAGCTCGTGC 61.869 66.667 0.07 0.07 44.14 5.34
988 1002 3.254024 AACCCATCGGCAAGCTCGT 62.254 57.895 0.00 0.00 0.00 4.18
1248 1273 3.322706 CTTTTTCCCCGCGGCTTCG 62.323 63.158 22.85 5.76 0.00 3.79
1413 1438 2.790791 CGAGGCCAGCTGGTAGGAG 61.791 68.421 32.81 17.10 37.57 3.69
1473 1498 2.125673 CCGTGGTGGAAGGCGTAG 60.126 66.667 0.00 0.00 42.00 3.51
1653 1681 2.629763 GTGTCGTTGTTCACCGGC 59.370 61.111 0.00 0.00 0.00 6.13
1713 1771 2.456119 CGATGTCTCCTGCAACGGC 61.456 63.158 0.00 0.00 41.68 5.68
1758 1816 0.460284 ACAAACTGCTATCCGGCTCG 60.460 55.000 0.00 0.00 0.00 5.03
1917 1975 2.917971 CAACGAAACGCTGGAAAAACAA 59.082 40.909 0.00 0.00 0.00 2.83
1920 1978 1.743958 TCCAACGAAACGCTGGAAAAA 59.256 42.857 12.70 0.00 46.82 1.94
1951 2009 1.232119 CGGGAAAAAGTACAAGCCGT 58.768 50.000 0.00 0.00 0.00 5.68
1967 2025 2.144730 TCACCACGTGAATTTTACGGG 58.855 47.619 19.30 12.97 45.24 5.28
1992 2050 2.429058 CAGCCTCACTGGTGCACT 59.571 61.111 17.98 0.00 43.19 4.40
2005 2085 3.297620 CACAGCACAACCCCAGCC 61.298 66.667 0.00 0.00 0.00 4.85
2008 2088 0.256177 TAACACACAGCACAACCCCA 59.744 50.000 0.00 0.00 0.00 4.96
2012 2092 3.371168 CACCAATAACACACAGCACAAC 58.629 45.455 0.00 0.00 0.00 3.32
2098 2178 5.979517 GTGCCCTTAATTTATCAAGCACATC 59.020 40.000 6.90 0.00 46.49 3.06
2206 2287 5.940470 GTGGAGAGTACAGTGGAAATGATTT 59.060 40.000 0.00 0.00 34.17 2.17
2216 2297 5.230942 AGATTTTTCGTGGAGAGTACAGTG 58.769 41.667 0.00 0.00 0.00 3.66
2397 2488 4.406456 TGATGCTGAACTACCCAAAATGT 58.594 39.130 0.00 0.00 0.00 2.71
2432 2523 0.473501 GGAGGGATCAGGGATGCTCT 60.474 60.000 0.00 0.00 31.08 4.09
2489 2580 1.809547 CACAATGTGTGTTATCCGCCA 59.190 47.619 5.00 0.00 43.08 5.69
2528 2619 7.989416 AAGGAAAGGATAAAAACACGTATCA 57.011 32.000 0.00 0.00 0.00 2.15
2529 2620 9.931210 CATAAGGAAAGGATAAAAACACGTATC 57.069 33.333 0.00 0.00 0.00 2.24
2607 2698 2.597805 AGTGGAGCTCGGACGTGT 60.598 61.111 7.83 0.00 0.00 4.49
2622 2713 4.101448 GCAGATGGTGGCGGGAGT 62.101 66.667 0.00 0.00 0.00 3.85
2639 2730 3.965539 CTGGAGCGGCTCAACTGGG 62.966 68.421 29.33 4.67 31.08 4.45
2640 2731 2.435586 CTGGAGCGGCTCAACTGG 60.436 66.667 29.33 11.40 31.08 4.00
2647 2738 1.965754 GATGGAAGTCTGGAGCGGCT 61.966 60.000 0.00 0.00 0.00 5.52
2650 2741 1.066908 GAGAGATGGAAGTCTGGAGCG 59.933 57.143 0.00 0.00 0.00 5.03
2664 2755 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
2676 3052 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2677 3053 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2678 3054 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2679 3055 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2680 3056 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2681 3057 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2682 3058 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2683 3059 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2684 3060 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2685 3061 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2686 3062 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2687 3063 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2688 3064 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2689 3065 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2690 3066 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2691 3067 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2692 3068 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2693 3069 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2694 3070 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2695 3071 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2696 3072 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2697 3073 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2698 3074 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2699 3075 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2700 3076 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2701 3077 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2702 3078 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2703 3079 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2704 3080 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2705 3081 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2706 3082 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2707 3083 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2708 3084 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
2709 3085 5.627735 GCAAAGAGAGAGAGAGAGAGAGAGA 60.628 48.000 0.00 0.00 0.00 3.10
2710 3086 4.574013 GCAAAGAGAGAGAGAGAGAGAGAG 59.426 50.000 0.00 0.00 0.00 3.20
2711 3087 4.225942 AGCAAAGAGAGAGAGAGAGAGAGA 59.774 45.833 0.00 0.00 0.00 3.10
2712 3088 4.521146 AGCAAAGAGAGAGAGAGAGAGAG 58.479 47.826 0.00 0.00 0.00 3.20
2713 3089 4.517285 GAGCAAAGAGAGAGAGAGAGAGA 58.483 47.826 0.00 0.00 0.00 3.10
2714 3090 3.629398 GGAGCAAAGAGAGAGAGAGAGAG 59.371 52.174 0.00 0.00 0.00 3.20
2715 3091 3.266772 AGGAGCAAAGAGAGAGAGAGAGA 59.733 47.826 0.00 0.00 0.00 3.10
2716 3092 3.379372 CAGGAGCAAAGAGAGAGAGAGAG 59.621 52.174 0.00 0.00 0.00 3.20
2717 3093 3.355378 CAGGAGCAAAGAGAGAGAGAGA 58.645 50.000 0.00 0.00 0.00 3.10
2718 3094 2.159198 GCAGGAGCAAAGAGAGAGAGAG 60.159 54.545 0.00 0.00 41.58 3.20
2719 3095 1.824230 GCAGGAGCAAAGAGAGAGAGA 59.176 52.381 0.00 0.00 41.58 3.10
2720 3096 1.134729 GGCAGGAGCAAAGAGAGAGAG 60.135 57.143 0.00 0.00 44.61 3.20
2721 3097 0.901124 GGCAGGAGCAAAGAGAGAGA 59.099 55.000 0.00 0.00 44.61 3.10
2722 3098 0.459934 CGGCAGGAGCAAAGAGAGAG 60.460 60.000 0.00 0.00 44.61 3.20
2723 3099 1.593787 CGGCAGGAGCAAAGAGAGA 59.406 57.895 0.00 0.00 44.61 3.10
2724 3100 1.449246 CCGGCAGGAGCAAAGAGAG 60.449 63.158 0.00 0.00 44.61 3.20
2725 3101 2.665000 CCGGCAGGAGCAAAGAGA 59.335 61.111 0.00 0.00 44.61 3.10
2726 3102 3.130160 GCCGGCAGGAGCAAAGAG 61.130 66.667 24.80 0.00 44.61 2.85
2729 3105 4.408821 ATCGCCGGCAGGAGCAAA 62.409 61.111 28.98 2.40 44.61 3.68
2836 3213 6.845302 TCACTGAAAAGATGATAACATGTGC 58.155 36.000 0.00 0.00 36.82 4.57
2837 3214 9.681692 TTTTCACTGAAAAGATGATAACATGTG 57.318 29.630 12.12 0.00 36.73 3.21
2857 3234 7.853524 TGAATCATGTTGCAGAAATTTTTCAC 58.146 30.769 5.88 0.00 39.61 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.