>input_sequence_65923
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-------------------------------------------------------ATGGGTTGCCTGCGGCGCCGGCCGG
AGCCGGCGGCCATCGACATCACCTGGGTGTCCTGCCGGGGCGTCAGGTCGTCGCTCCCGTTCCACACGCCGTGCCTCTAC
GCCTCCGTCTGTCTGACGCCGTCGTCCGCCCGCAAGAACGTCCGCCGCCGCCGCGTCAAGACCCCCACCGACCGCGCCGG
CGGCGAGAACCCCGAGTGGGACGAGCGCCTGCGCCTCCCCCTTCCCGACGACGCC---------TCAGAGGACGAAGCCG
CGGGGAAAAAGAAGGACGGGCACGTTGACAACCACGACGGCGTCCTTCTCGTGCGGTTCGAGCTCAAGGCCGAGGTGGCC
GTCCTCGGGGACGTGCTCGCCGCGTCGGCCGTCGTGCCGCTCTCCGACCTCGTCGCCGACGGCAGGACGCGCCGCGTCTC
CTACCAGCTGGCCTCGTCCGAGGACCGCAGGCAGCCCAACGGCGTCATCTCCTTCTCCTACGCCTTCCACCACGGAAGCA
CCGTCGACGACGACCAGGAGGACCGCAGCAGCGACGGTGAGCCCGTATCGCCCGCTAGCCCGGCCCCTCCCCCGCCGCT-
--GCCTCAGTCGACGGCGTCGTCCTCCGGGATGTACCCGGTGATAGACTGGGGGCCACTGGAGCACCTCGCGGTTTACCC
GCCGGTGAACAACGACACGGTCACGTCCTCAAGCTCAT------------------------------CGGAGCCGATTG
CGGTCTACCCGCCGTTGCAGGAGACATCGAGCCGTGGAATTTACCCGACGGTGGGCGAGCCGGATAGCAGTTTGTACCCC
ACAGTAGACTTTGCTCCGGTGAGCTGTTACCCGCCGATGACGGCGCCGTACTACTACGGTGGTGGTTTCGGGTGTCCGGC
AGCTCCTGCATGGGACGGGCGATGTTTGTACGGTTGA-------------------------------------------
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>chr7A_1_TraesCS7A01G041100
TTGTCTGCATCGTTTTTTTCCCCTTTGCATTTTTGTTCCAATTGGGTCTGTTCGACATTGATGCGGAGTCGACCAGGGGA
GACTCTCCCCTTTCAGGCTCCCTCCACCACACCTTCGAGAGACAGATCTGGCAACCCGAGCGGGCCGGGATCCTGATTGC
GGGGTAAGGTGGGTGGGGGGAGGGTAACATAGGTAAGGAGGCCGGAGAACTGAGCAGCCTACGCGACTAGAGAGATTAAC
GGCACCAGCCATAAGCAGGGCTACCTCCCCGGCGACCAAAGCTCAGTGCACCGGTGTAGGGCAGGAGAG--CCTTACCAC
CACCTTCACCGGAGGCCGCACGGCAGTTGGCGGCGTCCATAAGTGGCGGCGGGAAGGGAGGGAGATGA--GGGGGGTGGC
TCGGGCGGCTAGGGTTTCGTCGCCCCGAATGGCCGACGCGGGAGCCGCGAGTGGGCGATGGTTCGGCTTTCTTACTCACT
GTTCCGCGGAACTCTTTAGAAGCGTCACATATGTTTTCATGAGGTTTCGTTGTCTGCTTCTTGAGGTTTCATCGTGATGA
CAGGCATCTTCTCCCCAACTCCCTGTAGACAAAAAAAAAAAAAAACTCTCTGTAGATTTCCACTGCAGTTCTTGTCCACC
AGACACGAACGACACCCAAGAAAAGTCTACTACTTCCTTCGCAGAAAAAGAAGGGAAAAGTCTTCGTGATTTCTC--TCT
CTATCAGTGTTCTCCGTGCACGTACCTTT--CCACAATAGAAGAAGAAGTTGCCGCGCAACCTCCTCCAGTCTGTGACAG
CAACCCTAAGTTAATGCCGCGCCATTAATCTGACACGGACCCGTTCCAAACCTACCGACTTGATTTCCCGTCGGTATCAA
ACGCGCAGCGTCGCTCG-----GACTTCCTCCCTCCAGTCGTCTCCCGCCACCGCGTCGTCCAGCGCCTTCTTAACCAAC
ACCAAGCAAAATAGGCAAGCCAGAGTCAAGTTCTCGGGCGCACGAGC--TTGCCGATGGGTTGCCTGCGGCGCCGGCCGG
AGCCGGCGGCCATCGACATCACCTGGGTGTCCTGCCGGGGCGTCAGGTCGTCGCTCCCGTTCCACACGCCGTGCCTCTAC
GCCTCCGTCTGTCTGACGCCGTCGTCCGCCCGCAAGAACGTCCGCCGCCGCCGCGTCAAGACCCCCACCGACCGCGCCGG
CGGCGAGAACCCCGAGTGGGACGAGCGCCTGCGCCTCCCCCTTCCCGACGACGCC---------TCAGAGGACGAAGCCG
CGGGGAAAAAGAAGGACGGGCACGTTGACAACCACGACGGCGTCCTTCTCGTGCGGTTCGAGCTCAAGGCCGAGGTGGCC
GTCCTCGGGGACGTGCTCGCCGCGTCGGCCGTCGTGCCGCTCTCCGACCTCGTCGCCGACGGCAGGACGCGCCGCGTCTC
CTACCAGCTGGCCTCGTCCGAGGACCGCAGGCAGCCCAACGGCGTCATCTCCTTCTCCTACGCCTTCCACCACGGAAGCA
CCGTCGACGACGACCAGGAGGACCGCAGCAGCGACGGTGAGCCCGTATCGCCCGCTAGCCCGGCCCCTCCCCCGCCGCT-
--GCCTCAGTCGACGGCGTCGTCCTCCGGGATGTACCCGGTGATAGACTGGGGGCCACTGGAGCACCTCGCGGTTTACCC
GCCGGTGAACAACGACACGGTCACGTCCTCAAGCTCAT------------------------------CGGAGCCGATTG
CGGTCTACCCGCCGTTGCAGGAGACATCGAGCCGTGGAATTTACCCGACGGTGGGCGAGCCGGATAGCAGTTTGTACCCC
ACAGTAGACTTTGCTCCGGTGAGCTGTTACCCGCCGATGACGGCGCCGTACTACTACGGTGGTGGTTTCGGGTGTCCGGC
AGCTCCTGCATGGGACGGGCGATGTTTGTACGGTTGAAACCTCGGTTTCCACCCTTGTTTTTCCAGCGTTTCGTTGGACG
GTGTGCCGACGGCTTGTACTTTTTCCCGTAAAATTCACGTGGTGATGCCAGT----------------------GCACCA
GTGAGGCTGGGGTTGTGCTGTGTGTTATTGGTGGTATTCGATATGTTCGAGCCGATCAAATTCGTATGTATATTTGTGAA
ATTTGTGTATGTTGTCAGATGTGCTTGATAAATTAAGGGCACCTTTGATTTGAAGGT-CTTTTATAGGAAATTTCCATAT
GTTGGTGGTTTTATTAGTAGAATTGAATCCTGTGAATTTTTTTATGAAATCATTTCCACTGTACTCTCCACGAAAAATCT
AGCATCTACTCCAACCTCATG-AAAAAAAATTGTTTTGT-----TGTAATACAATTGAATATGAGACATTTTACAGAACA
TCAACTGGTTTTGGGCCCT---TTTTTTGTGATCAGATGGTCTGGATGCATGAATACTACACC-AAAAGTATACTTAGGC
GCCATGGACATTTTGGGTAGTTCAGCATCATAAATCTCTCAGAGAGCATCCCTGATCCCTCCAAGAACAATTACTATATG
GAAAACGCTATGGTTCAGCTGGCGGATAACACACATTGTGCCTGGCACCTCCTACGTTTGATACGTGTTTTTATCCTTTC
CTTATGTACTCTCCGCCTCCTTACGCCCACTCGCAGCCATGGCTGCTGCTCAAGCGCACACGTCCGAGCTCCACTCCCGC
CACCATCTGCCCAGTTGAGCCGCTCCAGACTTCCA---------------------------------------------
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---------------------------------------------------------------------------TCTCT
CTC-----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGCTCCTGCCGGCG
ATGCTTTTTTATACTTTTCGCAACAAAGGCTTTGTTGGCAAAGTCCTCCCGCAACATCATCTCTT-GTTGCATAACTTTC
TTGATTCACACCGCACATGTTATCATCTTTTCAGTG-AAAAATTTCTGCAACATGATTCATGTTCCAAAAGTCCTCT
>chr4A_247
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------AGCCAGAACCATGGCTGCCTACCCGGCGACCAAAGGTCCCTGCAACGGTGCAGGGCAGCAGAG--CCTTACCAC
CACCTTCACTGGAGGCCGCACGGCAGCCGGCGACGTCCTTGGGTGGCGGCGGGGAGGGAGGGAGAGGAAGGGTGGGTGGT
TCGGGCGGCTAGGGTTCCGTCGCCCATTCGGGGCGACGCGAGAGCCGTGAGTGGGCGATGGTTCGCCTTTCTTGCTCACT
ATTCCATGAAATCCTTTAGAACCGTCACATATGTTTTCATGAGGTTTCGTTGAGTGTTTCTTGAGGTTTCGTCGTGGTGA
CAGATGTCTTGTACCCAACACC---------------------------CTGTAGATTCCCACTGCAGTTCTTATCCACC
AGACACGA---ACACCCAAGAAAAGTCTACC---TCCTTCGCAGAAAAACAAGGGAAAAGTCTTCGTGACTTCCCTGTCT
ATCACCGAGTTCTCCCTGCACGTAGCTTT--CGACAAC---AGAAGAAGTTGCCGCGCAACCTCCTCCAGTCTGTGACAG
CAACCCTAAGTTAATGCCGCGCCATTAATTTGACACAGACCCCTTCCAAACCTACCGCCTA-----CCCGTCGGACTCAA
ACGCGCAGCCTCGCTCGCGATCGACTTCCTCCCTCCAGTCGTCTCCCGCCACCGCGTTGCCCAGCACCTTCTTAACCAAC
ACCAAGCCAAGTAGGCAACCCAGACTCGAGTCTTCGGGCACCCGAGT--TTGCGGATGGGTTGCCTGCGGCGCCGGCCGG
AGCCGGCGGCCATCGACATCTCGTGGGTGTCGTGCCGGGGCGTCAGGTCGTCGCTCCCGTTCCACACGCCGTGCCTCTAC
GCCTCCGTCTGCGTGACGCCGTCGTCCGCGGGCAAGAACGTCCGCCGCCGCCGCGTCAAGACCCCCACCGACCGCGCCGG
CGGCGAGAACCCCGAGTGGGACGAGCGCCTGCGCCTTCCCCTTCCCGACGACGCCTCGCCGGCGTCAGAGCAGGAAGCCG
CGGGGAAAAAGAAGGACGGGCACGTTGACCACGACGGCGGTGTCCTTCTCGTTCGGTTCGAGCTCAAGGCCGAGGTGGCC
GTCCTCGGCGACGTGCTCGCCGCGTCGGCCGTCGTGCCGCTCTCCGACCTCGTTGCCGACGGCAGGACGCGCCGCGTGTC
CTACCAGCTGGCCGCGTCCGAGGACCGCAGGCAGCCCAACGGCGTCATCTCCTTCTCGTACGCCTTCCACCACGGAAGCA
CCGTCGACGACGACCAGGAGGACCGCAGCAGCGACGGTGAGCCCGTATCGCCCGCTAGCCCGGCCCCTCCCCCGCCGCT-
--GCCTCAGTCGACGGGGTCATCCTCCGGGATGTACCCCATGATAGACTGGGAGCCACTG--------------------
-------------GACACGGTCACGTGCTCAAGCTACTACGCTCCTCCAGCTTCGTCGGACACTCAGGCGGAGCCGATTG
CGGTCTACCCACCGTTGTCGGAGACGTCGAGCCGTGGAATTTACCCGACGGTGGGGGAGTCGGATAGCAGTTTGTACCCC
ACAGTAGACTTTGCTCCGGTGACCTGTTACCCGCCGATGACGGCGCCGTACTACTACGGTGGTGATTTCGGGTGTCCGGC
AGCTCCTGCATGGGACGGGCGATGTTTGTACGGTTGAAACCTCGGTTTCCACCCCTGATTTTCCGGCGTTTCGTTGGACG
GTGTGCCGGCGGCTTGTACTTTTTTCCGTAAAATTCACGTGGTGATGCCGCCATACT----------------------A
GTGGTGCCGGGATTGTGCTGTGTGTTATTGGTGGTATTCGATACGTTCGAGCCGGTCAAATTCGTATGTATATTTGTGAA
ATTTGTGTACGTTGTCACATGTGCTTGATAAATTAAGGGCACCTTTGATTTGAAGGTTACTTTATAGGAATTTTTCATAT
GTTGGTGGTTTTATTAATTGAATTGAATCCTGTGGATTTTTTTATGGAATCATTTCTAA--TACTCTCCACGGAAAATCT
AGCATCCACTCCAACTTCATGAAAAAAAATTCATTTGTTTTGTCTGTGATACAATTGGATATGAGACATTTTACAGAACA
TCAACTGGTTTTGGGCTGTTTA-TTTTTGTGATCAGATGGTCTGGATGCATGAATACTACACAAAAAAGTATACTTAGGC
GCCATGGGCATTTTGGGTAGTTCAGCATCATAAATCTCTCAGCGAGCATCCCTGATCTGTCCAAGAACAATTAATATATG
GAAAACGCTATGGTTCAGCCGGCGAATAACACACACTGCGCCTGCCACCTCCTACATCCAACACGTGTTTTTATCCTTTC
CTTATGTACACTTCGCCTCCTTACGCCGTCTCGCAGTCATGGCTGCTGCTCGAGCGTGCACGTCCGAGCTCCGCTCCGGC
CACCATCTGATCAGTTGCGCAGCTCCAGACTTCCC---------------------------------------------
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---------------------------------------------------------------------------TCTGT
ATCCGTCGTCA---------------------------------------------------------CTCCTGTCGGCG
ATGCTTTTTTATACTTTTCGCAACAAAGGCCTTGTTGGCAAAGTCCTTCCGCAACGTCATCTCTT-GTTGCATAACTTTC
TTGATTCACACCATAGATGATTTCATCTTTTCATTGAAAATATTTCCGCAACATTATTCATGTTCCAAAAGTACTC-
>chr7D_250
CAGAACCAGGGTAGTCTC--------------------------------------------------------------
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--------------------------CCCGCGCGACCAAAGGTCCCTACAACGGTGCAGGGTAGCAGAGAGCCTTACCAC
CGCCTTCACTGGAGGCCGCACGGCGGCAGGTGACGTCCTCTAGTGGCGGCGGGGAGGGAGTGAGAGGAGGGGTGGGTGGC
TCGGGCGGCTAGGGTTTCGTCGCCCATTCGGGGCAACGCGAGAGCA-CGAGTGGGCGATGGTCTGGCTTTCTTGCTCACT
GTTCCATGAAACTCTTTAGAACCGTCACATATGCTTTCATGAGGTTTCGTTGTGTGTTTCTCAAGGTTTCATCGTGATGA
CAGATGTCTTGTCCCCAACTCC---------------------------CTGTAGATTTCCACTGCAGTTCTTGTCCACC
ACACACGC---ACACCCAAGAAAAGTCTACC---TCCTTCGCACAAAAACAAGGGAAAAGTCTTCGTGACTTCCCTGTCT
ATCACCCAGTTCTCCCTGCACGTAGCTTTTTCCACAATAGAAGAAGAAGTTGCCGCGCAACCTCCTCCAGTCCGTGACAG
CAACCCGAAGTTAATGCCGCGCCATTAATCTGACACGGACCCGTTCCAAACCTACCGACTTGATTTCCGGTCGGTATCAA
ACGCGCAGCCTCGCTCGGGATCGACTTCCTCCCTCCAGTCGTCTCCCGCCACCGCGTCGCCCAGCACCTTCTTAACCAAC
ACCAAGCCAAGTAGGCAACCCAGAGTCGAGTCCTCGGGACCCCGAGCTCTTGCGGATGGGTTGCCTGCGGCGCCGGCCGG
AGCCGGCGGCCATCGACATCACCTGGGTGTCGTGCCGGGGCGTCAGGTCGTCGCTCCCGTTCCACACGCCGTGCCTCTAC
GCCTCCGTCTCCGTCACGCCGTCGTCTGCCGGCAAGAACGTCCGCCGCCACCGCGTCAAGACCCCCACCGACCGCGCCGG
CGGCGAGAACCCCGAGTGGGACGAGCGCCTGCGGCTCCGCCTTCCCGACGACGCCTCGCTGGCGTCAGAGCAGGAAGCCG
CGGGGAAAAAGAAGGACGGGCACGTTGACCACGACGACAGCGTCCTTCTCGTGCGGTTCGAGCTCAAGGCCGAGGTGGCC
GTCCTCGGGGACGTGCTCGCCGCGTCGGCCGTCGTGCCGCTCTCCGACCTCGTCGCCGACGGCAGGACGCGCCGCGTGTC
CTACCAGCTTGCCGCGTCCGCGGACGGCAGGCAGCCCAACGGCGTCATCTCCTTCTCGTACGCCTTCCACCACGGAAGCA
CCATCGACGACGACCAGGAGGACCGCAGCAGCGACGGCGAGCCGGTATCGCCCGCTAGCCCGGCCCCTCCCCCGCCGCCG
CCGCCTGAGTCGACGGTGTCGTCCTCCGGGATGTACCCGGTGATGGAGTGGGGGCCACTGGAGCACCTCGCGGTTTACCC
ACCGGTGAACGCCGACACGGTCACGTGCTCAAGCTCAC------------------------------CGGAGCCGATTG
CGGTCTACCCACCGTTGCAGGAGACATCGAGCCGTGGAATTTACCCGATGGTGGGGGAGCCGGATAGCAGTTTGTACCCC
ACAGTAGACTTTGCTCCGGTGAGCTGTTACCCGCCGATGACGGCGCCGTACTACTACGGTGGTGGTTCCGGGTGTCCGGC
AGCTCCTGCATGGGACGGGCGATGTTTGTACGGTTGAAACCTCGGTTTCCACCC-TGATTTTCCAGCGTTTCGTTGGACG
GTGTGCCGGTGGCTTGTACTTTTTTCCGTAAAATTCACGTGGTGATGCCGCCATACTAGGCATCCTTGGCCGGCGCAGCA
GTGATGCCGGGATTGTGCTGTGCGTTATTGGTGGTATTCGATATGTTCGAGCCGATAAAATTCGTATGTATATTTGTGAA
ATTTGTGTATGTTGTCACATGTGCTTGATAAATTAAAGGCACCTTTGATTTGAAGGTTCTTTTATAGGAATTTTTCATAT
GTTGGTGGTTTTATTAGTAGAATTGAATCCTGTGGATTTTTTTATGGAATCATTTCTACTGTACTCTTCACGAAAAATCT
AGCATCCACTTCAACCTCATG-AAAAAAAATCATTTGTTTTGTCTGTGATACAATTGAATATGAGACATTTTAAAGAACA
TCAATTGGTTTTGGGCCGTTTATTTTTTGTGATCAGATGGTCTGGATGCATGAATACTACACC-AAAAGTATACTTGGGC
GCCATGGGCATTTTCGGTAGTTCAGCATCATAAATCTCTCAGCGAGCATCCCTGATCCCTTTAAGAACAATTACTATATG
GAAAACGCTATGGTTCAGCCGGCGGATAACACACACCGTGCCTGGCACCTCCTACGTT-AATACGTGTTTTTATCCTTTT
CTTATGTACTCTCCGTCTCCTTCCACCTGCTCGCAGCCATGGCAGTTGCTCGAGCGCGCACGTCTGAGCTCTGCTCCGGC
CACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCT
CTC-----TCT---------------------------------------------------------CTCCTGCCGGCG
ATGCTTTTT---------CGCAACAAAGGCTTTGTTGGCAAAGTCCTCCCGCAACATCATCTCTTAGTTGCATAACTTTC
TTGATTCACACCATAGATGATATCATCTTTTCATTAAAAATATTTCTGCAACATTATTCATGTTCCAAAAGTACTC-
>SNPs
SS-SSSSSSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----S--S--S----S------------------S--SS----S-----S-------S---------------
---------S----------------SS----S-----S-S------------S-----------S------S-------
-------------------------SSSSS--S-------S--------------------------------S------
-----SS-S------------S-------------------------------S--S-----------------------
---SSS----S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
--------SSS-------------------SSSS---------------S-------------------S---S------
S-SS-S-S-------S--------S-------------------------------------------------------
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---------S-------------------------------------------------S-----S--------------
-------S--S-------S--------S---S-------S-S-----------S--------------------------
-------------------------------S------------------------------------------------
-----------SS-----------------S-------------------------------------------------
----------------------------------------------------------------------S-S-------
-----------------------------S--S-----------------------------------------------
-----------------------------------------------------------------------------S--
-------------S-------------------------------------------S----------------------
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----------------S---------------------------------------------------------------
S---------SS--------------S-----------------------------------------------------
----------S--------------------------------------------S------------------------
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------------------------------------------------------S--S----------------------
--------S---------------S------------------------SSS-------------------------S--
----S--S---S--------------------------------------------------------------------
-----------------S----------------------------------------------------S---S-----
----------------------------------S-----------S---------S-----------------------
------S------------------------SS---SS---------S--------------------------------
-----------------S--------------------------------------------------------------
-------S----------------------------------S-------------------------------------
-------------------S---------------S----------------------SS--------------------
---------------------------SS----------------------S-----S--------------S----S--
---------SS------S--S-------------S---------------------------------------------
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-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
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------------SS-S---S-------------S------S-------------S-----------------S---S
>forward_123
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-----------------------CCACCACACCTTCGAGAGAC-------------------------------------
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>reverse_2088
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-------TGGGGTTGTGCTGTGTGTTA-----------------------------------------------------
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