Multiple sequence alignment - TraesCS7A01G019200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G019200 chr7A 100.000 2705 0 0 1 2705 7919627 7922331 0.000000e+00 4996.0
1 TraesCS7A01G019200 chr7D 94.789 2648 90 23 57 2675 7077719 7080347 0.000000e+00 4082.0
2 TraesCS7A01G019200 chrUn 95.008 1943 78 10 1 1933 51200634 51198701 0.000000e+00 3033.0
3 TraesCS7A01G019200 chrUn 86.847 517 21 9 1967 2467 51198705 51198220 3.960000e-148 534.0
4 TraesCS7A01G019200 chr6B 84.483 290 42 2 993 1279 11299310 11299021 1.590000e-72 283.0
5 TraesCS7A01G019200 chr6B 100.000 31 0 0 2489 2519 578951665 578951695 1.050000e-04 58.4
6 TraesCS7A01G019200 chr6D 84.314 255 40 0 1025 1279 5987846 5987592 1.610000e-62 250.0
7 TraesCS7A01G019200 chr2D 88.525 61 6 1 2485 2544 67220830 67220890 3.740000e-09 73.1
8 TraesCS7A01G019200 chr3D 93.333 45 3 0 2489 2533 512745068 512745024 1.740000e-07 67.6
9 TraesCS7A01G019200 chr3A 90.909 44 4 0 2489 2532 743385535 743385492 2.910000e-05 60.2
10 TraesCS7A01G019200 chr5D 94.595 37 2 0 2492 2528 499238435 499238399 1.050000e-04 58.4
11 TraesCS7A01G019200 chr7B 94.444 36 2 0 2492 2527 353634250 353634215 3.760000e-04 56.5
12 TraesCS7A01G019200 chr1B 88.889 45 5 0 2489 2533 423591460 423591416 3.760000e-04 56.5
13 TraesCS7A01G019200 chr3B 90.244 41 4 0 2490 2530 161300067 161300107 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G019200 chr7A 7919627 7922331 2704 False 4996.0 4996 100.0000 1 2705 1 chr7A.!!$F1 2704
1 TraesCS7A01G019200 chr7D 7077719 7080347 2628 False 4082.0 4082 94.7890 57 2675 1 chr7D.!!$F1 2618
2 TraesCS7A01G019200 chrUn 51198220 51200634 2414 True 1783.5 3033 90.9275 1 2467 2 chrUn.!!$R1 2466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 106 0.373716 GCCGCTAGATTCACAAACGG 59.626 55.0 0.0 0.0 41.97 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 1965 1.001764 CTGGGACTGGAGCATGCAA 60.002 57.895 21.98 3.87 34.45 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.049186 CAGCATGAAAAGCTTATGATGCC 58.951 43.478 23.03 11.99 41.14 4.40
55 56 0.719465 CGACAAATCGGTGTGCTACC 59.281 55.000 0.00 1.13 44.99 3.18
103 106 0.373716 GCCGCTAGATTCACAAACGG 59.626 55.000 0.00 0.00 41.97 4.44
130 133 5.295152 ACGTTTGTAAACTTGTAGGGAGAG 58.705 41.667 6.00 0.00 36.77 3.20
141 144 2.237143 TGTAGGGAGAGTCCAGCATTTG 59.763 50.000 0.00 0.00 38.64 2.32
351 357 4.383850 AACTTGTGTTGTAGCAAATGCA 57.616 36.364 8.28 0.00 38.09 3.96
365 371 5.299148 AGCAAATGCAGAATTTTGCTGTTA 58.701 33.333 28.29 2.10 44.38 2.41
366 372 5.759273 AGCAAATGCAGAATTTTGCTGTTAA 59.241 32.000 28.29 1.74 44.38 2.01
367 373 6.428771 AGCAAATGCAGAATTTTGCTGTTAAT 59.571 30.769 28.29 10.69 44.38 1.40
376 382 6.985645 AGAATTTTGCTGTTAATTGCACAGAA 59.014 30.769 18.98 9.29 43.90 3.02
387 393 0.746063 TGCACAGAAAGGCCACTTTG 59.254 50.000 5.01 5.97 46.51 2.77
463 469 9.424319 AGATTATCTTTATTACTGTATGCCACG 57.576 33.333 0.00 0.00 0.00 4.94
479 485 4.804108 TGCCACGTTTTTAATTGGATGAG 58.196 39.130 0.00 0.00 0.00 2.90
1203 1209 2.430610 GCAGAGGAGGCTGGACGAT 61.431 63.158 0.00 0.00 36.41 3.73
1389 1395 1.745890 TCCATATGGAAGCCGGTCG 59.254 57.895 22.52 0.00 42.18 4.79
1488 1494 2.063979 ATCGTGGGAGCGAATGGGA 61.064 57.895 0.00 0.00 44.38 4.37
1510 1516 3.459598 AGATTTTGAGGGGCTATACTGCA 59.540 43.478 0.00 0.00 34.04 4.41
1551 1557 2.639839 AGACCAAGACACTTACTGCCAT 59.360 45.455 0.00 0.00 0.00 4.40
1557 1563 0.322816 ACACTTACTGCCATGGCCTG 60.323 55.000 33.44 26.42 41.09 4.85
1660 1669 0.030235 CATCAACATCATGCTGGGCG 59.970 55.000 1.02 0.00 0.00 6.13
1661 1670 1.105167 ATCAACATCATGCTGGGCGG 61.105 55.000 1.02 0.00 0.00 6.13
1662 1671 2.048023 CAACATCATGCTGGGCGGT 61.048 57.895 1.02 0.00 0.00 5.68
1768 1778 7.452880 TCATTTGCTGTGATACTTAGCTTTT 57.547 32.000 0.00 0.00 38.25 2.27
1914 1932 4.053469 TGTTTTTGCTTTTACCAGAGGC 57.947 40.909 0.00 0.00 0.00 4.70
1917 1935 1.247567 TTGCTTTTACCAGAGGCTGC 58.752 50.000 0.00 0.00 0.00 5.25
1918 1936 0.401738 TGCTTTTACCAGAGGCTGCT 59.598 50.000 0.00 0.00 0.00 4.24
1919 1937 1.202927 TGCTTTTACCAGAGGCTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
1920 1938 1.200948 GCTTTTACCAGAGGCTGCTTG 59.799 52.381 0.00 0.00 0.00 4.01
1935 1953 3.310774 GCTGCTTGATGTGTATGTGTAGG 59.689 47.826 0.00 0.00 0.00 3.18
1947 1965 6.544197 TGTGTATGTGTAGGTCAATTTGTTGT 59.456 34.615 0.00 0.00 0.00 3.32
1978 1996 1.821759 TCCCAGTGTGTTTGCACCG 60.822 57.895 0.00 0.00 44.65 4.94
2009 2028 3.146066 GAGATTTGGTTGTGGTAGTGCA 58.854 45.455 0.00 0.00 0.00 4.57
2031 2050 1.003866 GTCGGTCACAAGTTGTTCTGC 60.004 52.381 5.57 0.00 0.00 4.26
2091 2114 5.783100 ATTGTTGTTCTTTTTGCAGTGTG 57.217 34.783 0.00 0.00 0.00 3.82
2258 2294 2.297195 TTGTGTCGCGCGTGTGTAG 61.297 57.895 30.98 0.00 0.00 2.74
2281 2317 1.654954 GAGCTGGAGTTGCATGCCTG 61.655 60.000 16.68 4.35 0.00 4.85
2283 2319 1.530013 GCTGGAGTTGCATGCCTGTT 61.530 55.000 16.68 0.00 0.00 3.16
2284 2320 1.825090 CTGGAGTTGCATGCCTGTTA 58.175 50.000 16.68 0.00 0.00 2.41
2291 2327 3.944015 AGTTGCATGCCTGTTAGATTCTC 59.056 43.478 16.68 0.00 0.00 2.87
2293 2329 3.273434 TGCATGCCTGTTAGATTCTCAC 58.727 45.455 16.68 0.00 0.00 3.51
2296 2332 4.763073 CATGCCTGTTAGATTCTCACTGA 58.237 43.478 6.49 0.00 0.00 3.41
2337 2373 2.548280 CCATGTGTTTGCCATTGCTGAA 60.548 45.455 0.00 0.00 38.71 3.02
2338 2374 3.331150 CATGTGTTTGCCATTGCTGAAT 58.669 40.909 0.00 0.00 38.71 2.57
2339 2375 3.472283 TGTGTTTGCCATTGCTGAATT 57.528 38.095 0.00 0.00 38.71 2.17
2340 2376 3.806380 TGTGTTTGCCATTGCTGAATTT 58.194 36.364 0.00 0.00 38.71 1.82
2341 2377 4.197750 TGTGTTTGCCATTGCTGAATTTT 58.802 34.783 0.00 0.00 38.71 1.82
2342 2378 4.035324 TGTGTTTGCCATTGCTGAATTTTG 59.965 37.500 0.00 0.00 38.71 2.44
2343 2379 4.035441 GTGTTTGCCATTGCTGAATTTTGT 59.965 37.500 0.00 0.00 38.71 2.83
2344 2380 4.639310 TGTTTGCCATTGCTGAATTTTGTT 59.361 33.333 0.00 0.00 38.71 2.83
2345 2381 5.207033 GTTTGCCATTGCTGAATTTTGTTC 58.793 37.500 0.00 0.00 38.71 3.18
2346 2382 3.058450 TGCCATTGCTGAATTTTGTTCG 58.942 40.909 0.00 0.00 38.71 3.95
2347 2383 3.243670 TGCCATTGCTGAATTTTGTTCGA 60.244 39.130 0.00 0.00 38.71 3.71
2348 2384 3.928375 GCCATTGCTGAATTTTGTTCGAT 59.072 39.130 0.00 0.00 33.53 3.59
2349 2385 4.389687 GCCATTGCTGAATTTTGTTCGATT 59.610 37.500 0.00 0.00 33.53 3.34
2350 2386 5.106987 GCCATTGCTGAATTTTGTTCGATTT 60.107 36.000 0.00 0.00 33.53 2.17
2351 2387 6.566376 GCCATTGCTGAATTTTGTTCGATTTT 60.566 34.615 0.00 0.00 33.53 1.82
2352 2388 7.011189 CCATTGCTGAATTTTGTTCGATTTTC 58.989 34.615 0.00 0.00 0.00 2.29
2353 2389 7.095523 CCATTGCTGAATTTTGTTCGATTTTCT 60.096 33.333 0.00 0.00 0.00 2.52
2354 2390 6.752335 TGCTGAATTTTGTTCGATTTTCTG 57.248 33.333 0.00 0.00 0.00 3.02
2355 2391 6.502652 TGCTGAATTTTGTTCGATTTTCTGA 58.497 32.000 0.00 0.00 0.00 3.27
2476 2541 2.793790 TGCAAGTTATGTTTTTGCTGCG 59.206 40.909 9.47 0.00 45.53 5.18
2481 2546 5.030874 AGTTATGTTTTTGCTGCGTACTC 57.969 39.130 0.00 0.00 0.00 2.59
2483 2548 0.948678 TGTTTTTGCTGCGTACTCCC 59.051 50.000 0.00 0.00 0.00 4.30
2505 2570 5.185056 CCCTCCGAATTTGAACTAAAACCAT 59.815 40.000 0.00 0.00 0.00 3.55
2535 2600 4.730949 TTTTGTATCGGAGGGAGTACTG 57.269 45.455 0.00 0.00 0.00 2.74
2542 2607 1.740380 CGGAGGGAGTACTGCATTGTG 60.740 57.143 16.81 0.00 0.00 3.33
2595 2660 8.578308 GCAAATTGCATGTCTTAGCATTATAA 57.422 30.769 13.73 0.00 44.26 0.98
2622 2687 3.756434 CCGAGGGTAAATTGCAAGAAAGA 59.244 43.478 4.94 0.00 0.00 2.52
2624 2689 4.455877 CGAGGGTAAATTGCAAGAAAGACT 59.544 41.667 4.94 0.00 0.00 3.24
2628 2693 5.009610 GGGTAAATTGCAAGAAAGACTGACA 59.990 40.000 4.94 0.00 0.00 3.58
2639 2704 1.374758 GACTGACAAGCTCCCACCG 60.375 63.158 0.00 0.00 0.00 4.94
2670 2736 3.299503 ACAAGCAAATCCACTCCAACTT 58.700 40.909 0.00 0.00 0.00 2.66
2675 2741 3.552890 GCAAATCCACTCCAACTTGAACC 60.553 47.826 0.00 0.00 0.00 3.62
2676 2742 3.884037 AATCCACTCCAACTTGAACCT 57.116 42.857 0.00 0.00 0.00 3.50
2677 2743 2.930826 TCCACTCCAACTTGAACCTC 57.069 50.000 0.00 0.00 0.00 3.85
2678 2744 2.123589 TCCACTCCAACTTGAACCTCA 58.876 47.619 0.00 0.00 0.00 3.86
2679 2745 2.711009 TCCACTCCAACTTGAACCTCAT 59.289 45.455 0.00 0.00 0.00 2.90
2680 2746 3.907474 TCCACTCCAACTTGAACCTCATA 59.093 43.478 0.00 0.00 0.00 2.15
2681 2747 4.349636 TCCACTCCAACTTGAACCTCATAA 59.650 41.667 0.00 0.00 0.00 1.90
2682 2748 5.014123 TCCACTCCAACTTGAACCTCATAAT 59.986 40.000 0.00 0.00 0.00 1.28
2683 2749 5.711976 CCACTCCAACTTGAACCTCATAATT 59.288 40.000 0.00 0.00 0.00 1.40
2684 2750 6.209391 CCACTCCAACTTGAACCTCATAATTT 59.791 38.462 0.00 0.00 0.00 1.82
2685 2751 7.255942 CCACTCCAACTTGAACCTCATAATTTT 60.256 37.037 0.00 0.00 0.00 1.82
2686 2752 8.143835 CACTCCAACTTGAACCTCATAATTTTT 58.856 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.253230 GCAAACGGCATCATAAGCTTTT 58.747 40.909 3.20 0.00 43.97 2.27
45 46 2.434359 GCTCCACGGTAGCACACC 60.434 66.667 0.00 0.00 44.75 4.16
54 55 0.319555 TCAGAACGAAAGCTCCACGG 60.320 55.000 10.78 0.00 0.00 4.94
55 56 1.656095 GATCAGAACGAAAGCTCCACG 59.344 52.381 0.00 0.00 0.00 4.94
103 106 4.284485 CCTACAAGTTTACAAACGTTGCC 58.716 43.478 0.00 0.00 43.51 4.52
117 120 1.203187 TGCTGGACTCTCCCTACAAGT 60.203 52.381 0.00 0.00 35.03 3.16
130 133 0.958382 TACCGTGGCAAATGCTGGAC 60.958 55.000 15.29 5.99 41.70 4.02
141 144 2.897350 GCTCATGGCTACCGTGGC 60.897 66.667 6.01 0.00 40.65 5.01
351 357 6.514947 TCTGTGCAATTAACAGCAAAATTCT 58.485 32.000 13.25 0.00 43.88 2.40
365 371 1.708341 AGTGGCCTTTCTGTGCAATT 58.292 45.000 3.32 0.00 0.00 2.32
366 372 1.708341 AAGTGGCCTTTCTGTGCAAT 58.292 45.000 3.32 0.00 0.00 3.56
367 373 1.136695 CAAAGTGGCCTTTCTGTGCAA 59.863 47.619 3.32 0.00 38.87 4.08
376 382 0.746659 GCACTGAACAAAGTGGCCTT 59.253 50.000 3.32 0.00 46.34 4.35
448 454 7.757624 CCAATTAAAAACGTGGCATACAGTAAT 59.242 33.333 0.00 0.00 0.00 1.89
456 462 5.184864 TCTCATCCAATTAAAAACGTGGCAT 59.815 36.000 0.00 0.00 0.00 4.40
463 469 5.414765 AGTCCGGTCTCATCCAATTAAAAAC 59.585 40.000 0.00 0.00 0.00 2.43
479 485 2.673368 CAGAGTATTTTGCAGTCCGGTC 59.327 50.000 0.00 0.00 0.00 4.79
1137 1143 1.444672 CAGCTCCGAGATGATGGCA 59.555 57.895 7.97 0.00 32.38 4.92
1140 1146 1.326328 TCTCCAGCTCCGAGATGATG 58.674 55.000 15.31 7.27 32.38 3.07
1203 1209 4.235762 GCTATCGCGGCCCCTTCA 62.236 66.667 6.13 0.00 0.00 3.02
1326 1332 2.494918 CCTAGAGCCGGTTCGTGG 59.505 66.667 13.05 14.44 0.00 4.94
1488 1494 3.459598 TGCAGTATAGCCCCTCAAAATCT 59.540 43.478 0.00 0.00 0.00 2.40
1551 1557 2.034066 GTTGCTGCTACCAGGCCA 59.966 61.111 5.01 0.00 39.54 5.36
1557 1563 2.751837 GCCTGGGTTGCTGCTACC 60.752 66.667 22.48 22.48 34.82 3.18
1660 1669 3.982241 GCTGTTGCTGGTGCCACC 61.982 66.667 7.01 7.01 39.22 4.61
1661 1670 3.982241 GGCTGTTGCTGGTGCCAC 61.982 66.667 0.00 0.00 44.34 5.01
1768 1778 1.601162 CCACTTTCGGTTTCTCGACGA 60.601 52.381 0.00 0.00 39.01 4.20
1888 1906 8.197439 GCCTCTGGTAAAAGCAAAAACATATAT 58.803 33.333 0.00 0.00 0.00 0.86
1914 1932 4.507710 ACCTACACATACACATCAAGCAG 58.492 43.478 0.00 0.00 0.00 4.24
1917 1935 7.615582 AATTGACCTACACATACACATCAAG 57.384 36.000 0.00 0.00 0.00 3.02
1918 1936 7.446931 ACAAATTGACCTACACATACACATCAA 59.553 33.333 0.00 0.00 0.00 2.57
1919 1937 6.939730 ACAAATTGACCTACACATACACATCA 59.060 34.615 0.00 0.00 0.00 3.07
1920 1938 7.377766 ACAAATTGACCTACACATACACATC 57.622 36.000 0.00 0.00 0.00 3.06
1935 1953 3.184986 GGAGCATGCAACAACAAATTGAC 59.815 43.478 21.98 0.00 39.30 3.18
1947 1965 1.001764 CTGGGACTGGAGCATGCAA 60.002 57.895 21.98 3.87 34.45 4.08
1978 1996 4.337555 CACAACCAAATCTCATCTCCATCC 59.662 45.833 0.00 0.00 0.00 3.51
2009 2028 1.485066 AGAACAACTTGTGACCGACCT 59.515 47.619 0.00 0.00 0.00 3.85
2087 2110 3.930336 TCACACCATTCAGATCTCACAC 58.070 45.455 0.00 0.00 0.00 3.82
2091 2114 3.931468 CACACTCACACCATTCAGATCTC 59.069 47.826 0.00 0.00 0.00 2.75
2258 2294 1.078848 ATGCAACTCCAGCTCGTCC 60.079 57.895 0.00 0.00 0.00 4.79
2281 2317 8.709386 TTCTAATGCTTCAGTGAGAATCTAAC 57.291 34.615 0.00 0.00 35.25 2.34
2283 2319 8.072321 ACTTCTAATGCTTCAGTGAGAATCTA 57.928 34.615 0.00 0.00 35.25 1.98
2284 2320 6.945218 ACTTCTAATGCTTCAGTGAGAATCT 58.055 36.000 0.00 0.00 35.25 2.40
2291 2327 3.873952 GGCCTACTTCTAATGCTTCAGTG 59.126 47.826 0.00 0.00 0.00 3.66
2293 2329 4.142609 TGGCCTACTTCTAATGCTTCAG 57.857 45.455 3.32 0.00 0.00 3.02
2296 2332 3.459598 TGGATGGCCTACTTCTAATGCTT 59.540 43.478 3.32 0.00 34.31 3.91
2337 2373 9.919348 CACAAAATTCAGAAAATCGAACAAAAT 57.081 25.926 0.00 0.00 0.00 1.82
2338 2374 8.930760 ACACAAAATTCAGAAAATCGAACAAAA 58.069 25.926 0.00 0.00 0.00 2.44
2339 2375 8.472683 ACACAAAATTCAGAAAATCGAACAAA 57.527 26.923 0.00 0.00 0.00 2.83
2340 2376 8.379161 CAACACAAAATTCAGAAAATCGAACAA 58.621 29.630 0.00 0.00 0.00 2.83
2341 2377 7.757173 TCAACACAAAATTCAGAAAATCGAACA 59.243 29.630 0.00 0.00 0.00 3.18
2342 2378 8.114359 TCAACACAAAATTCAGAAAATCGAAC 57.886 30.769 0.00 0.00 0.00 3.95
2343 2379 8.870160 ATCAACACAAAATTCAGAAAATCGAA 57.130 26.923 0.00 0.00 0.00 3.71
2344 2380 8.870160 AATCAACACAAAATTCAGAAAATCGA 57.130 26.923 0.00 0.00 0.00 3.59
2345 2381 9.360514 CAAATCAACACAAAATTCAGAAAATCG 57.639 29.630 0.00 0.00 0.00 3.34
2346 2382 9.654417 CCAAATCAACACAAAATTCAGAAAATC 57.346 29.630 0.00 0.00 0.00 2.17
2347 2383 9.393512 TCCAAATCAACACAAAATTCAGAAAAT 57.606 25.926 0.00 0.00 0.00 1.82
2348 2384 8.783833 TCCAAATCAACACAAAATTCAGAAAA 57.216 26.923 0.00 0.00 0.00 2.29
2349 2385 8.256605 TCTCCAAATCAACACAAAATTCAGAAA 58.743 29.630 0.00 0.00 0.00 2.52
2350 2386 7.780064 TCTCCAAATCAACACAAAATTCAGAA 58.220 30.769 0.00 0.00 0.00 3.02
2351 2387 7.345422 TCTCCAAATCAACACAAAATTCAGA 57.655 32.000 0.00 0.00 0.00 3.27
2352 2388 7.707893 ACTTCTCCAAATCAACACAAAATTCAG 59.292 33.333 0.00 0.00 0.00 3.02
2353 2389 7.492020 CACTTCTCCAAATCAACACAAAATTCA 59.508 33.333 0.00 0.00 0.00 2.57
2354 2390 7.706179 TCACTTCTCCAAATCAACACAAAATTC 59.294 33.333 0.00 0.00 0.00 2.17
2355 2391 7.555087 TCACTTCTCCAAATCAACACAAAATT 58.445 30.769 0.00 0.00 0.00 1.82
2476 2541 4.203654 AGTTCAAATTCGGAGGGAGTAC 57.796 45.455 0.00 0.00 0.00 2.73
2481 2546 4.521256 TGGTTTTAGTTCAAATTCGGAGGG 59.479 41.667 0.00 0.00 0.00 4.30
2483 2548 6.801862 GTCATGGTTTTAGTTCAAATTCGGAG 59.198 38.462 0.00 0.00 0.00 4.63
2505 2570 6.654959 TCCCTCCGATACAAAATAAATGTCA 58.345 36.000 0.00 0.00 32.27 3.58
2589 2654 6.239204 GCAATTTACCCTCGGCCTTTTATAAT 60.239 38.462 0.00 0.00 0.00 1.28
2595 2660 1.182667 GCAATTTACCCTCGGCCTTT 58.817 50.000 0.00 0.00 0.00 3.11
2622 2687 0.830444 TACGGTGGGAGCTTGTCAGT 60.830 55.000 0.00 0.00 0.00 3.41
2624 2689 0.034337 GTTACGGTGGGAGCTTGTCA 59.966 55.000 0.00 0.00 0.00 3.58
2628 2693 2.660802 CGGTTACGGTGGGAGCTT 59.339 61.111 0.00 0.00 36.18 3.74
2639 2704 2.095415 GGATTTGCTTGTCACCGGTTAC 60.095 50.000 12.12 12.12 0.00 2.50
2654 2720 3.891366 AGGTTCAAGTTGGAGTGGATTTG 59.109 43.478 2.34 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.