>input_sequence_71237
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---------------------------------------------ATGGACAGAGCTGGCGGTAACCAAGCAGGCCAAGT
GTCGAAGAAAGGAAAGAAGAAGCACGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGGCTGG
AGAAAGCGCTCGCAAACTCTGCTGCCATCATCTCGGAGCTGGAGAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAGGAGG
CTGGACGATGAAGGGGCCGCGATAGCCGAGGCGGTGGCCCTTCATGTCCTCATAGGCGAAGACTGCGATGAACCCCGTCA
GCTGAGGTGGAACGGCCATAGAGGCCGCGGCCATCGGGACGATTTCGTGGACCACGAACCGGCTCTAGGCGCGCAAGGAG
CAGGAGCAGATACCTATCCATATGGAAGCCGGTCGCCGCTGGCACGGGCCTCTCGTTCCCACATGCCCCAGTGGAGGCTC
ACCGACTGTGGCATGTCCGGGCCGTTCTCGTTCTCATCGTGGGAGCGAATGGGAGATTTTGAGGGGCTATACTGCAAAGG
GACACCCTGCCAGACAGACCAAGACACTTACTGCCATGGCCTGGTAGCAGCAACCCAGGCCGCCTCTCCATTCGGATACG
GTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGGGCTTCCTCCATCAACATCATGCTG---GGCGGTGGCACCAGC
AACAGCCTGAACATCTACAGAAGACAATTCTAG-----------------------------------------------
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>chr7A_1_TraesCS7A01G019200
ATTAGACAGCATGAAAAGCTTATGATGCCGTTTGCACGACAAATCGGTGTGCTACCG--TGGAGCTTTCGTTCTGATCTA
ATCGGTGCCGCTAGATTCACAAACGGGCAACGTTTGTAAACTTGTAGGGAGAGTCCAGCATTTGCCACGGTAGCCATGAG
CCATTTTCAGGAGTTTTCCATAGGGATGCAAGTGGCTCGCTGCATATCCTGCATCCTCATACTACACATTAGTGTGTTGG
TTTTTGCGGCCG---TTAGCGCACTAATAGGAGTGTTTTGTGGGCCAAGCACACTTGCATCCCCAGTTTTCCACTTTGGA
CTAGTTTGCACTTATAACTTGTGTTGTAGCAAATGCAGAATTTTGCTGTTAATTGCACAGAAAGGCCACTTTGTTCAGTG
CTGTTCACTTTGCCGCTAAGTTTGGCCGTTTACTAGTGGATCAGATTATCTTTATTACTGTATGCCACGTTTTTAATTGG
ATGAGACCGGACTGCAAAATACTCTGTATAGTTATGTTATGTCTGCTATTGAACTATACGATGCTTTGATCTTTCTGAGT
TATTTTCTGCAAAATGGATCATCATCCATGTTTTTACTATAAGTTTACTTGATTTACTTATATATTCCTTGGATTACCGA
GAAGGGAATATGTCTTGCGTGCATTGAATCTTCGTTTCTAACCTGAACTTTCTTCTTTTCTCGATACAGGAGAAGATCCT
TATGAGTTGGTTGGCTGTGAATTCATATAAATTCTGGTACTGTGAAAATGGGTCAAAAGGTGGCAGGAAGTTCGTGACGA
GATTAACCATAGACGATTGAGGCCTGAGTGGATTTAGGTATTCTGTTGTGACAGCTTAAGTGGCTCTTCAACTTGAAGAC
GTTGCTGTTGCCTTAGGATATGCTCTTTTCAGCGAGGAGTACAGCCACACACTCTTAGATTGTAATTTTTCTTAATTGGA
TTAGTACAGGAAGATCAGATACAGTGAAAAGGGAGCGCAGTCGTGATGGACAGAGCTGGCGGTAACCAAGCAGGCCAAGT
GTCGAAGAAAGGAAAGAAGAAGCACGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGGCTGG
AGAAAGCGCTCGCAAACTCTGCTGCCATCATCTCGGAGCTGGAGAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAGGAGG
CTGGACGATGAAGGGGCCGCGATAGCCGAGGCGGTGGCCCTTCATGTCCTCATAGGCGAAGACTGCGATGAACCCCGTCA
GCTGAGGTGGAACGGCCATAGAGGCCGCGGCCATCGGGACGATTTCGTGGACCACGAACCGGCTCTAGGCGCGCAAGGAG
CAGGAGCAGATACCTATCCATATGGAAGCCGGTCGCCGCTGGCACGGGCCTCTCGTTCCCACATGCCCCAGTGGAGGCTC
ACCGACTGTGGCATGTCCGGGCCGTTCTCGTTCTCATCGTGGGAGCGAATGGGAGATTTTGAGGGGCTATACTGCAAAGG
GACACCCTGCCAGACAGACCAAGACACTTACTGCCATGGCCTGGTAGCAGCAACCCAGGCCGCCTCTCCATTCGGATACG
GTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGGGCTTCCTCCATCAACATCATGCTG---GGCGGTGGCACCAGC
AACAGCCTGAACATCTACAGAAGACAATTCTAGATCATAGTTACTTTCTTTTT-ACACCAAAGGTCGATCTTTTCATTTG
CTGTGATACTTAGCTTTTCGTCGAGAAACCGAAAGTGGATATAGGGA-ATATAGGAGAGCCGTCTTACTGTCGAGTCGAA
GAAG---CGGTGTGTATTTGGCGTCAGTT----ACAGACAGTGGGTTTTTGTGATGAATTATTAAATATATGTTTTTGCT
TTTACCAGAGGCTGCTTGATGTGTATGTGTAGGTCAATTTGTTGTTGCATGCTCCAGTCCCAGTGTGTTTGCACCGGATG
GAGATGAGATTTGGTTGTGG-TAGTGCAGGTCGGTCACAAGTTGTTCTGCGTTTGGCTGGTCGCCACCTCAGTGTG----
GTGGTATTATTATTGTTGTTCTTTTTGCAGTGTGAGATCTGAATGGT--------GTGAGTGTGTGTGTGGTACCAGTTG
ATCTCTTTTTGCCCACCTTTTCTGTGGATTAGCCCATTGTGGATTGGAT-----GGGGTCTCCCCAAACTTGGCACCACC
ATTGCTGTCATGAGCATGCATGCATGAAAAGTAAGTTGTGTCGCGCGTGTGTAGGACGAGCTGGAGTTGCATGCCTGTTA
GATTCTCACTGAAGCATTAGAAGTAGGCCATCCATGTGTTTGCCATTGCTGAATTTTGTTCGATTTTCTGAAT-------
------------TTTGTGTTGATTTGGAGAAGTGATCTCCTTGTCTGCTCGATGTTCCAAATTTTGTTT----------G
TTTTGGTTCTGTTGTACGCTTGTGCTGTTAATGTGTAAGTGCAAGTTATGTTTTTGCTGCGTACTCCCTCCGAATTTGAA
CTAAAACCATGACATTTATTTTGTATCGGAGGGAGTACTGCATTGTGCACTATAATGTTTTTTTTTGAGAGCATGCAAAT
TGCATGTCTTAGCATTATAAAAGGCCGAGGGTAAATTGCAAGAAAGACTGACAAGCTCCCACCGTAA-CCGGTGACAAGC
AAATCCACTCCAACTTGAACCTCATAATTTTTTTCTCAGGAACCAACATA
>chrUn_1
ATTAGACAGCATGGAAAGCTTATGATGCGGTTTGCACGACAAATCTGTGTGCTAATCCATGGAGCTTTCGTTCTGATCTA
ATCGGTGCCGCTAGATTCACAAACCAGCAATGTTTAACCTC--GTAGGGAGAATCCAGCATTTACCACGGTAGCCATGAG
CCGTTTTCAGGAGTTTTCCATAGGGATGCAAGTGGCTCGCTGCATGTCCTGCATCCTCATACTACACATTAGTGT-TTGG
TTTTTGCGGCCATTTTTAGCGCACTAATAGGAGTGCTTTGTGGGCCAAGCACACTTGCATCCCCAGTTTTCCACTTTGGA
CTAGTTTGCACTTATAACGTGTGTTGTAGCAAATGCTGAATTTTGCTGTTCGCTGCACAGAGAGGCCACTTTATTCAGTG
CTGTTCACTTTGCCGCTAAGTTTGGCCGTTTACTAGTGGATCAGATTATCTTTGTTACTCCGTGCCAC-TTTTTAATTGG
ATGAAACCGGACTGCAAAATACTCTGTATAGTTATGTTATGTCTGCTATTGAACTATACGATGCTTTGATCTTTCTGAGT
TATTTTCTGCAAAATGGATCATCATCCATGTTTTTACTATAAGTTCACTTGATTTACTTATATATTCCTATGATTACCGA
GAAGGGAATATGTCTGGCGTGCATTGAATCTTCGTTTCTAACCTGAACTTTCTTCTTTTCTCGATACAGGAGAAGATCCT
TATGAGTTGGTTGGCTGTGAATTCATATAAATTCTGGTACTGTGAAAATGGGTCAAAAGGTGGCAGGAAGTTCGTGACGA
GATTAACCATAGACGATTGAGGTCTGAGTGGATTTAGGTATTCTGTTGTGACAACTTAAGTGGTTCTTCAACTTGAAGAC
GTTGCTGTTGCCTTAGGATATGCTCTTTTCAGCGAGGAGTACAGACACACACTCTTAGATTGTAATTTTTCTTAATTGGA
TTAGTACAGGAAGATCAGATACAGTGAAAAGGGAGCGCAGTCGTGATGGACAGAGCTGGAGGCAACCAAGCAGGCCAAGT
GTCGAAGAAAGGAAAGAAGAAGCATGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGGCTGG
AGAAAGCACTCGCAAACTCCGCAGCGATCATTTCAGAGCTGGAAAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAGGAGG
CTGGATGACGAAGGGGCTGCGATAGCCGAGGCTGTCGCCCTTCATGTCCTCATAGGCGAAGATTGCGATGAACCCCGCCA
GCTAATGTGGAACGGCCATAGAGGCCGCGGCCATCGGGGTGATTTTGTGGATCACGAGCCGGCTCCAGGCGCGCAAGGAG
CAGGAGGAGACGCCTATCCATATGGAAGCCGGTCACCGCTGGCACGGGCCTCTCGTCCCCACATGCCCCAGTGGAGGCTG
ACCGACTGTGGCATGTCCGGGCCGTTCTCGTTCTCATCGTGGGAGCGAATGGGCGATTTTGAGGGGCTATACTGCGAAGG
GACACCCTGTCAGACAGACCAAGACACTTACTGCCACGGCCTCGTAGCAGCAACCCAGGCCGCCTCTCCATTCGGATACG
GTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGTGCTTCCTCCATCAACATCATGCTGGGCGGC---GGCACCAGC
AACAGCCTGAACATCTACAGGAGACAATTCTAGATCATAGTTACTTTCTTTTTTACACCAAAGGTCGATCTTTTCATTTG
CTGTGATACTTAGCTTTGCGTCGAGAAACCGAAAGTGGATATAGGGATATATAGGAGAGCCGTCTTACTGTCGAGTCGAA
GAAGAAGCGGTGTGTATTTGGCGTCAGTT----ACAGAAAGTGTGTTTTTGTGATGAATTATTAA-TATATGTTTTTGCT
TTTACCTGAGGTTG----ATGTGTA--------------------------------------TGTGTTTGCACCAGATG
GAGATGAGATTTGGTTGTGGCTAGTGCTGGTCGGTCACAAGTTGTTCTGGGTTTGGCTGGTCGGCACCTCAGTGTG----
GTGGCATTATTGTTGTTGTTCTTTTTGCAATGTCAGATTTGAATTTT--------GTGA-----------GTACCAGTTG
ATCTCTTTTTGCCCACCTTCTCCGTGGATTAGCCCATTGTGGATTGGATTGGATGGGGTCTCCCCAAACTAGGCACCACC
ATTGCTGTCATGAGCATGCATGCATGAAAAGTAAGTTGTGTCGCGCGTGTGTAAGACGAGCTGCAGTTGCATGCCTATCT
GATTCTTATTG-AGCATTAGAAGTAGGCCATCCATGTGTTTGCCATTGCTGA-------------------AT-------
------------TTTGTGTTGATTTGGAGAAGTGATCTCCTTGTCTGCTCAATGTTCCAAATTTTGTTTGTTTTCTTTTG
TTTTGGTTCTGTTGTACGCTTGTGCTGTTAATGTGTAAGTGCAAGTTATGT-----------------------------
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>chr7D_57
--------------------------------------------------------G--TGGAGCTTTCGTTCTGATTTG
G-----GCCGCTAGATTCACAAACGAGCAACGTTTGTAACCTTGTATGGAGAATCCAGCATTTACCAGGGTAGCCATGAG
CCATTTTCAGGAGTTTTCCATAGGGATGCAAGTGGCTCGCTGCGTATGCTGCATCCTCATACTACACGTTAGTGTGTTGG
TTTTTGCGGCCG---TTAGAGCACTAATAGGAGTGTTTTGTGGGCCAAGCACACTTGCATCCCCAGTTTTCCACTTTGGA
CCAGTTTGCACTTTTAACTTGTGTTGTAGCAAATGCTGAATTTTGCTGTTCGCTGCACAGGGAGGCCACTTTATTCAGTG
CTGTTCACTTTGCTGCTAAGTTTGGCCGTTTACTAGTGGATCAGATTATCTTTGTTACTGTGTGCCAC-TTTTTAATTGG
ATGAAACCGGACTGCAAAATACTCTGTATAGTTATGTTATGTCTGCTGTTGAACTATACGATGCTTTGATCTTTCTGAGT
TATTTTCTGCAAAATGGATCATCATCCATGTTTTTACTATAAGTTTACTTGATTTACTTATATATTCCTTGGATTACCGA
GAAGGGAACATGTCTTGCGCGCATTGAATCTTCGTTTCTAACCTGAACTTTCTTCTTTTCTCGATACAGGAGAAGATCCT
TATGAGTTGGTTGGCTGTGAATTCATATAAATTCTGGTACTGTGAAAATGGGTCAAAAGGTGGCAGGAAGTTCGTGACGA
GATTAACCATAGACGATTGAGGCCTGAGTGGATTTAGGTATTCTGTTGTGACAGCTTAAGTGGCTCTTCAACTTGAAGAC
GTTGCTGTTGCCTTAGGATATGCTCTTTTCAGCGAGGAGTACAGCCACACACTCTTAGATTGTAATTTTTCTTAATTGGA
TTAGTACAGGAAGATCAGATACAGTGAAAAGGGAGCGCAGTCGTGATGGACAGAGCTGGCGGTAACCAAGCAGGCCAGGT
GTCGAAGAAAGGAAAGAAGAAGCACGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGGCTGG
AGAAAGCGCTCGCAAACTCTGCCGCGATCATCTCGGAACTGGAGAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAGGAGG
CTGGACGACGAAGGGGCCGCGATAGCCGAGGCGGTGGCCCTTCATGTCCTCATAGGCGAAGACTGCGATGAACCCCGTCA
GCTGAGGTGGAACGGCCATAGAGGCCGCGGCCATCGGGACGATTTCGTGGATCACGAACCGGCTCTAGGCGCGCAAGGAG
CAGGAGCAGATACCTATCCATATGGAAGCCGGTCACCGCTGGCACGGGCCCCTCGTTCCCACGTGCCCCAGTGGAGGCTC
ACCGACTGTGGCATGTCCGGGCCATTCTCGTTCTCATCGTGGGAGCGAATGGGCGATTTTGAGGGGCTATACTGCGAAGG
GGCACCCTGCCAGACAGACCAAGACACTTACTGCCACGGCCTCGTAGCAGCAACCCAGGCCGTCTCTCCATTCGGATACG
GTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGGGCTTCCTCCATCAACATCATGCTG---GGC---GGCACCAGC
AACAGCCTGAACATCTACAGAAGACAATTCTAGATCATAGTTACTTTCTTTTTTACACCAAAGGTCGATCTTTTCATTTG
CTGTGATACTTAGTGTTGCGCCGAGAAACCAAAAGTGGATATAGGAT-ATATAG--GAGCCGTCTTACTGTCGAGTCGAA
GCAGAAGCGGTGTGTATTTGGCGTCAGTTTGTTACAGACAGTGGGTTTTTGTGATGAATTATTAA-TATATGTTTTTGCT
TTTACCAGAGGGTG----ATGTGTATGTGTAGCTCAATTTGTTGCTGCATGCTCCAGTCCCAGTGTGTTTGCACCAGATG
GAGATGAGATTTGGTTGTGG-TAGTGCTGGTCGGTCACAAGTTGTTCTGGGTTTGGCTGGTCGCCACCTCAGTGTGTGTG
GTGGTATTATTATTGTTGTTCGTTTTGCAATGTCAGATCTGAATGGTGTGAGTCAGTGAGTGTGTGTGTGGTACCAGTCG
ATCTCTTTTTGCCCACCTTTTCTGTGGATTAGCCCATTGTGGATTGGAT-----GGGGTCTCCCCAAACTTGGCACCACC
ATTGCTGTCATGAGCATGCATGCATGAAAAGTAAGTTGTGTCGCGCGTGTGTAAGACGAGCTGGAGTTGCATGCCTATCC
GATTTTTATTG-AGCATTAGAAGCAGGGCATCCATGTGTTTGCCATTGCTGA-------------------ATTTTGTTT
GATTTTGTGAACTTTGTGTTGATTTGGAGAAGTGTTCGCCTTGTCTGGTCGATGTTTCAAAATTTGTTAGTTTTTTG--G
TTTTGGTTCTGTTGTACGTTTGTGCTGTTAATGTGTA-GTGCAAGTTATGTTTTTGCTGCATACTTCGTCCGAATTTGAA
CTAAAACCACGACATTTATTTTGTATCGGAGGGAGTACTACATTGTTCACTACAATGTTTTTTTT-GAGAGCATGCAAAT
TGCATGTCTTAGCTTTATAGAAGGCCGAGGGTAAATTGCAAGAAAGGCCGACGAGCTCCCACCATAACCCGGTGACAAGT
AAATCCACTCCAACTCGAAC------------------------------
>SNPs
-------------S--------------S----------------S--------SS------------------------
-------------------------S-------------S------------S----------S----------------
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------------------------------------S-------------SSS--------S----------S-------
-----------------------------------------------------S-------S------S-----------
----S---------------------------------------------------------------------------
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----------------------S--S------------------------------------------------------
--------S-----------------------------------------------------------------------
---------------------------------------------------S----------------------------
----------------------------------S---------------------------------------------
-----------------------------------------------------S---------------------S----
------------------------------------S-----S-------------------------------------
--------------------------------------------------------------------SSS---------
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-----------------S--------------------------------------------------------------
-----------------------------------------------------------------S--------------
-----------S--SSSS--------------S-----------S------------------------------S----
---------------------------S---------------------S------------------------------
-----------------------------S---S----------------------------------------------
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-----------------------------------------------------S----------------------S-SS
------S-S--S----------------------------------------SSSSSSSSSSSSSSSSSSS---------
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------------------------------------------------------------S----S-S------------
---------S-----------------------------S------S-----S------------S--------------
-------------S-----S--------------------------S-S---S----------S---------------S
---------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_106
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------GCCGCTAGATTCACAAACGG------------------------------------------------------
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>reverse_1965
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--------------------------------------------TTGCATGCTCCAGTCCCAG-----------------
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