Multiple sequence alignment - TraesCS7A01G017400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G017400 chr7A 100.000 3780 0 0 1 3780 7587017 7583238 0.000000e+00 6981.0
1 TraesCS7A01G017400 chr7A 84.810 237 24 6 1858 2086 519849213 519848981 1.060000e-55 228.0
2 TraesCS7A01G017400 chr7A 97.826 92 1 1 2083 2173 80596387 80596478 1.410000e-34 158.0
3 TraesCS7A01G017400 chr7D 86.686 2118 156 61 1 2078 6472301 6470270 0.000000e+00 2233.0
4 TraesCS7A01G017400 chr7D 91.628 1075 56 15 2167 3223 6470260 6469202 0.000000e+00 1456.0
5 TraesCS7A01G017400 chr7D 96.889 225 6 1 3395 3618 6469002 6468778 3.560000e-100 375.0
6 TraesCS7A01G017400 chr7D 92.568 148 8 2 3228 3374 6469135 6468990 3.830000e-50 209.0
7 TraesCS7A01G017400 chr7D 87.931 174 19 2 3609 3780 260696522 260696695 1.780000e-48 204.0
8 TraesCS7A01G017400 chr7D 88.304 171 18 1 3612 3780 397552023 397552193 1.780000e-48 204.0
9 TraesCS7A01G017400 chr7D 97.826 92 1 1 2082 2172 18013194 18013103 1.410000e-34 158.0
10 TraesCS7A01G017400 chr7D 95.876 97 2 2 2075 2170 153666280 153666375 5.060000e-34 156.0
11 TraesCS7A01G017400 chr4A 90.242 1076 66 22 2151 3198 733713593 733714657 0.000000e+00 1369.0
12 TraesCS7A01G017400 chr4A 91.074 829 37 13 690 1504 733712096 733712901 0.000000e+00 1086.0
13 TraesCS7A01G017400 chr4A 87.744 718 49 15 1 693 733711282 733711985 0.000000e+00 802.0
14 TraesCS7A01G017400 chr4A 85.304 592 38 15 1541 2103 733712903 733713474 1.970000e-157 566.0
15 TraesCS7A01G017400 chr5B 87.500 296 28 5 1797 2086 629626199 629625907 2.180000e-87 333.0
16 TraesCS7A01G017400 chr5B 86.054 294 33 5 1798 2086 31699744 31700034 3.670000e-80 309.0
17 TraesCS7A01G017400 chr5B 97.143 35 1 0 3583 3617 703065057 703065023 4.080000e-05 60.2
18 TraesCS7A01G017400 chr1A 87.415 294 31 3 1797 2086 491736028 491736319 2.180000e-87 333.0
19 TraesCS7A01G017400 chr3A 87.415 294 30 4 1797 2086 23811622 23811912 7.830000e-87 331.0
20 TraesCS7A01G017400 chr3A 94.286 35 1 1 1696 1729 117788384 117788350 7.000000e-03 52.8
21 TraesCS7A01G017400 chr1D 86.054 294 35 3 1797 2086 277136888 277136597 1.020000e-80 311.0
22 TraesCS7A01G017400 chr6A 85.714 294 34 5 1798 2086 564003941 564004231 1.710000e-78 303.0
23 TraesCS7A01G017400 chr6A 88.793 232 24 1 1797 2028 84372513 84372284 2.220000e-72 283.0
24 TraesCS7A01G017400 chr6A 100.000 35 0 0 3583 3617 1658736 1658702 8.760000e-07 65.8
25 TraesCS7A01G017400 chr6D 90.964 166 13 2 3617 3780 448179374 448179539 4.910000e-54 222.0
26 TraesCS7A01G017400 chr6D 88.439 173 16 4 3611 3780 457326383 457326554 4.950000e-49 206.0
27 TraesCS7A01G017400 chr2D 89.820 167 15 2 3616 3780 44472003 44472169 2.960000e-51 213.0
28 TraesCS7A01G017400 chr2D 96.703 91 2 1 2080 2169 146472380 146472470 2.350000e-32 150.0
29 TraesCS7A01G017400 chr2D 80.702 114 18 3 1132 1242 118357765 118357877 6.730000e-13 86.1
30 TraesCS7A01G017400 chr5D 87.778 180 19 2 3604 3780 242648509 242648330 1.380000e-49 207.0
31 TraesCS7A01G017400 chr5D 94.286 35 1 1 1696 1729 184451839 184451873 7.000000e-03 52.8
32 TraesCS7A01G017400 chr3D 89.286 168 15 2 3615 3780 547460539 547460705 1.380000e-49 207.0
33 TraesCS7A01G017400 chr3D 88.304 171 18 1 3612 3780 199541301 199541131 1.780000e-48 204.0
34 TraesCS7A01G017400 chr3D 98.864 88 0 1 2084 2170 355714692 355714605 5.060000e-34 156.0
35 TraesCS7A01G017400 chr3D 95.000 100 3 2 2079 2176 531693685 531693784 5.060000e-34 156.0
36 TraesCS7A01G017400 chr4D 84.343 198 27 4 3586 3780 383876460 383876656 1.390000e-44 191.0
37 TraesCS7A01G017400 chr4D 94.872 39 1 1 3579 3617 67236004 67235967 4.080000e-05 60.2
38 TraesCS7A01G017400 chr4B 95.876 97 1 3 2075 2169 662010093 662009998 1.820000e-33 154.0
39 TraesCS7A01G017400 chr2B 94.898 98 4 1 2081 2177 653585344 653585441 6.540000e-33 152.0
40 TraesCS7A01G017400 chr2B 96.591 88 2 1 2084 2170 638002799 638002712 1.090000e-30 145.0
41 TraesCS7A01G017400 chr2B 100.000 28 0 0 3314 3341 536786884 536786857 7.000000e-03 52.8
42 TraesCS7A01G017400 chr7B 97.368 38 1 0 3578 3615 193720269 193720232 8.760000e-07 65.8
43 TraesCS7A01G017400 chr6B 95.000 40 2 0 3578 3617 101171365 101171404 3.150000e-06 63.9
44 TraesCS7A01G017400 chr6B 94.872 39 1 1 3579 3617 140591726 140591763 4.080000e-05 60.2
45 TraesCS7A01G017400 chr6B 94.737 38 1 1 3579 3616 577170098 577170062 1.470000e-04 58.4
46 TraesCS7A01G017400 chr2A 94.286 35 1 1 1696 1729 478454410 478454444 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G017400 chr7A 7583238 7587017 3779 True 6981.00 6981 100.00000 1 3780 1 chr7A.!!$R1 3779
1 TraesCS7A01G017400 chr7D 6468778 6472301 3523 True 1068.25 2233 91.94275 1 3618 4 chr7D.!!$R2 3617
2 TraesCS7A01G017400 chr4A 733711282 733714657 3375 False 955.75 1369 88.59100 1 3198 4 chr4A.!!$F1 3197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 644 0.178767 TCGATGGATGTCAGCCTTGG 59.821 55.0 8.91 3.66 0.0 3.61 F
1494 1652 0.397675 TCATCCTCATCGACTGCCCT 60.398 55.0 0.00 0.00 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 2432 0.173708 GTTCACTGCTACTCCCTCCG 59.826 60.0 0.00 0.0 0.0 4.63 R
3394 3765 0.108186 CAGCACATCTAACGGCCAGA 60.108 55.0 2.24 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.078637 GCAGATGGAGCTCACAGCA 60.079 57.895 17.19 4.28 45.56 4.41
51 52 5.066117 CACAGCAAGATCAAAGCAGATACAT 59.934 40.000 0.00 0.00 0.00 2.29
96 97 4.489771 GGCAGCATGTACGGGCCT 62.490 66.667 0.84 0.00 41.39 5.19
102 103 1.522355 CATGTACGGGCCTGAGCTG 60.522 63.158 21.41 6.19 39.73 4.24
158 160 2.742372 GTGCCTGTCGTCGCCATT 60.742 61.111 0.00 0.00 0.00 3.16
163 165 1.811266 CTGTCGTCGCCATTCCCTG 60.811 63.158 0.00 0.00 0.00 4.45
165 167 1.375523 GTCGTCGCCATTCCCTGTT 60.376 57.895 0.00 0.00 0.00 3.16
255 261 2.885861 CTCGTCGGGGAGGAAGTG 59.114 66.667 0.00 0.00 0.00 3.16
345 362 1.383803 ATCTGGTGAGGGAGGGAGC 60.384 63.158 0.00 0.00 0.00 4.70
497 518 0.324645 GCATTTGGTCCCCCTGATGT 60.325 55.000 0.00 0.00 0.00 3.06
502 523 2.302587 TGGTCCCCCTGATGTTTTTC 57.697 50.000 0.00 0.00 0.00 2.29
506 530 3.258372 GGTCCCCCTGATGTTTTTCTTTC 59.742 47.826 0.00 0.00 0.00 2.62
509 533 5.070446 GTCCCCCTGATGTTTTTCTTTCTTT 59.930 40.000 0.00 0.00 0.00 2.52
540 564 6.645003 GGAAAAACTAACCATTCACATCAACC 59.355 38.462 0.00 0.00 0.00 3.77
570 594 5.652994 AAGGCTGTGACACAAAGTTAAAA 57.347 34.783 10.02 0.00 0.00 1.52
572 596 5.831997 AGGCTGTGACACAAAGTTAAAATC 58.168 37.500 10.02 0.00 0.00 2.17
576 600 6.533367 GCTGTGACACAAAGTTAAAATCCAAA 59.467 34.615 10.02 0.00 0.00 3.28
614 638 6.871844 AGACCAATATATCGATGGATGTCAG 58.128 40.000 8.54 0.00 37.66 3.51
619 643 2.251409 ATCGATGGATGTCAGCCTTG 57.749 50.000 8.91 0.00 0.00 3.61
620 644 0.178767 TCGATGGATGTCAGCCTTGG 59.821 55.000 8.91 3.66 0.00 3.61
629 653 3.057969 TGTCAGCCTTGGACAATACTG 57.942 47.619 7.68 7.68 41.96 2.74
630 654 2.371841 TGTCAGCCTTGGACAATACTGT 59.628 45.455 11.70 0.00 41.96 3.55
631 655 3.580895 TGTCAGCCTTGGACAATACTGTA 59.419 43.478 11.70 0.00 41.96 2.74
714 853 1.671556 GGTTGGGGTAAAATGCTTGCG 60.672 52.381 0.00 0.00 0.00 4.85
735 874 4.391830 GCGGAAATCTGTGACATGAAGTTA 59.608 41.667 0.00 0.00 0.00 2.24
742 881 9.520204 AAATCTGTGACATGAAGTTAAAAGTTG 57.480 29.630 0.00 0.00 0.00 3.16
760 899 8.735692 AAAAGTTGATCATCACAAAACCAAAT 57.264 26.923 6.55 0.00 0.00 2.32
762 901 7.718272 AGTTGATCATCACAAAACCAAATTG 57.282 32.000 6.55 0.00 0.00 2.32
863 1006 4.962995 TGTTTTTGTGAGGGTAAAATGGGA 59.037 37.500 0.00 0.00 0.00 4.37
868 1011 5.736951 TGTGAGGGTAAAATGGGAATTTG 57.263 39.130 0.00 0.00 0.00 2.32
872 1015 6.995686 GTGAGGGTAAAATGGGAATTTGTTTT 59.004 34.615 0.00 0.00 0.00 2.43
914 1057 2.607892 GCGGCACTGTGTTGGAGTC 61.608 63.158 9.86 0.00 0.00 3.36
920 1063 2.224066 GCACTGTGTTGGAGTCTAGTGT 60.224 50.000 9.86 0.00 38.17 3.55
1179 1337 3.168528 AAGACCACCACCACGGCT 61.169 61.111 0.00 0.00 39.03 5.52
1494 1652 0.397675 TCATCCTCATCGACTGCCCT 60.398 55.000 0.00 0.00 0.00 5.19
1558 1717 3.520862 CCGCATTTGCATCGCCCT 61.521 61.111 3.13 0.00 42.21 5.19
1587 1748 7.874016 TGAGTCAAAATTGCAATTAGCTCATTT 59.126 29.630 24.35 10.70 45.94 2.32
1588 1749 8.025243 AGTCAAAATTGCAATTAGCTCATTTG 57.975 30.769 24.35 20.67 45.94 2.32
1589 1750 7.658575 AGTCAAAATTGCAATTAGCTCATTTGT 59.341 29.630 24.35 6.47 45.94 2.83
1597 1758 5.691305 GCAATTAGCTCATTTGTTCAACACA 59.309 36.000 0.00 0.00 41.15 3.72
1632 1796 9.950496 AGTATGATTCTACCATGAATCCATTAC 57.050 33.333 12.73 11.47 46.97 1.89
1635 1799 5.985175 TTCTACCATGAATCCATTACCCA 57.015 39.130 0.00 0.00 0.00 4.51
1654 1818 9.830186 ATTACCCATGATATTCTCTAGTGTAGT 57.170 33.333 0.00 0.00 0.00 2.73
1730 1901 6.346120 CGATTACTCTTATGAAATGGACAGCG 60.346 42.308 0.00 0.00 0.00 5.18
1731 1902 4.207891 ACTCTTATGAAATGGACAGCGT 57.792 40.909 0.00 0.00 0.00 5.07
1735 1906 1.078709 ATGAAATGGACAGCGTCGTG 58.921 50.000 0.00 0.00 32.65 4.35
1741 1912 3.513680 ATGGACAGCGTCGTGTAATAA 57.486 42.857 0.00 0.00 32.65 1.40
1743 1914 1.922545 GGACAGCGTCGTGTAATAACC 59.077 52.381 0.00 0.00 32.65 2.85
1766 1937 5.931532 CAGTATGGTTGATTGTCAGTGTTC 58.068 41.667 0.00 0.00 0.00 3.18
1768 1939 5.702670 AGTATGGTTGATTGTCAGTGTTCTG 59.297 40.000 0.00 0.00 42.54 3.02
1816 1990 2.222027 GCTACTGCTGTTTGTTCACCT 58.778 47.619 0.09 0.00 36.03 4.00
1881 2055 4.870221 TCTCTGATTGTTTCATGATGCG 57.130 40.909 0.00 0.00 32.72 4.73
1957 2154 8.846211 CCATTTATCGGGTTATTCTTACAACAT 58.154 33.333 0.00 0.00 0.00 2.71
2031 2228 3.378427 AGTTTCACTGCTTGAACTTGTCC 59.622 43.478 1.27 0.00 44.28 4.02
2032 2229 1.967319 TCACTGCTTGAACTTGTCCC 58.033 50.000 0.00 0.00 0.00 4.46
2033 2230 1.490490 TCACTGCTTGAACTTGTCCCT 59.510 47.619 0.00 0.00 0.00 4.20
2090 2291 7.179338 AGGATCATGTATCTGTAATGTACTCCC 59.821 40.741 0.00 0.00 34.75 4.30
2099 2300 1.946984 AATGTACTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
2102 2303 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
2105 2306 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2107 2308 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2111 2312 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2113 2314 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2114 2315 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2116 2317 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2117 2318 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2118 2319 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2119 2320 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2120 2321 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2123 2324 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2125 2326 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2126 2327 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2127 2328 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2128 2329 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2129 2330 6.479660 ACTCGTCGTGGTTTTAGTTCAAATTA 59.520 34.615 0.00 0.00 0.00 1.40
2130 2331 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTAA 59.989 33.333 0.00 0.00 0.00 1.40
2131 2332 7.692088 TCGTCGTGGTTTTAGTTCAAATTAAA 58.308 30.769 0.00 0.00 0.00 1.52
2132 2333 7.639461 TCGTCGTGGTTTTAGTTCAAATTAAAC 59.361 33.333 0.00 0.00 0.00 2.01
2145 2419 7.641020 AGTTCAAATTAAACTAAAACCACGACG 59.359 33.333 4.73 0.00 35.25 5.12
2147 2421 7.346695 TCAAATTAAACTAAAACCACGACGAG 58.653 34.615 0.00 0.00 0.00 4.18
2150 2424 7.945033 ATTAAACTAAAACCACGACGAGTAA 57.055 32.000 0.00 0.00 0.00 2.24
2153 2427 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
2158 2432 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2230 2513 7.331934 GCATCATCAGTAACAGTTCTACAAGAA 59.668 37.037 0.00 0.00 0.00 2.52
2233 2516 8.082852 TCATCAGTAACAGTTCTACAAGAAGTC 58.917 37.037 0.00 0.00 35.80 3.01
2238 2521 8.643324 AGTAACAGTTCTACAAGAAGTCTGATT 58.357 33.333 11.90 7.03 35.80 2.57
2239 2522 7.954788 AACAGTTCTACAAGAAGTCTGATTC 57.045 36.000 11.90 0.00 35.80 2.52
2240 2523 6.459923 ACAGTTCTACAAGAAGTCTGATTCC 58.540 40.000 11.90 0.00 35.80 3.01
2258 2541 1.377994 CTTCCCAGCCTCTGCAGTT 59.622 57.895 14.67 0.00 41.13 3.16
2304 2591 4.386413 CTGAAAGGCTGAACCGCT 57.614 55.556 0.00 0.00 46.52 5.52
2311 2598 0.326264 AGGCTGAACCGCTCATCTTT 59.674 50.000 0.00 0.00 46.52 2.52
2312 2599 1.555075 AGGCTGAACCGCTCATCTTTA 59.445 47.619 0.00 0.00 46.52 1.85
2314 2601 2.346803 GCTGAACCGCTCATCTTTACA 58.653 47.619 0.00 0.00 32.14 2.41
2322 2609 4.122776 CCGCTCATCTTTACACTGCTTAT 58.877 43.478 0.00 0.00 0.00 1.73
2328 2615 6.115446 TCATCTTTACACTGCTTATCTTGGG 58.885 40.000 0.00 0.00 0.00 4.12
2353 2641 1.073763 TGCCTTGTAGGTGTTGATGCT 59.926 47.619 0.00 0.00 37.80 3.79
2389 2677 4.039092 GCCCCTGCAGAAGAGGCA 62.039 66.667 23.65 0.00 43.32 4.75
2407 2695 0.107456 CAGTGCTTGTCACCACTCCT 59.893 55.000 3.02 0.00 46.81 3.69
2621 2909 3.225798 GCAGCACAAACAGGGGCA 61.226 61.111 0.00 0.00 0.00 5.36
2764 3052 1.811679 GAAGGGCGGCTTCTTCTCG 60.812 63.158 20.71 0.00 37.13 4.04
2919 3214 0.107643 TCGGTGTGCTTGATTCCACA 59.892 50.000 0.00 0.00 39.45 4.17
2959 3255 5.525199 TCTTTGTTCTTCCAAATTTACGCC 58.475 37.500 0.00 0.00 34.07 5.68
3033 3332 2.148768 TGCAGTGAGCTCATCTTGTTG 58.851 47.619 21.47 12.24 45.94 3.33
3075 3374 7.437862 TGGCTTAATTTTGATTGTTGAACTGAC 59.562 33.333 0.00 0.00 0.00 3.51
3079 3378 7.951530 AATTTTGATTGTTGAACTGACATCC 57.048 32.000 0.00 0.00 0.00 3.51
3138 3445 4.280819 CATTGCTCCTTTTATCCCTTCCA 58.719 43.478 0.00 0.00 0.00 3.53
3139 3446 3.652057 TGCTCCTTTTATCCCTTCCAG 57.348 47.619 0.00 0.00 0.00 3.86
3141 3448 2.509964 GCTCCTTTTATCCCTTCCAGGA 59.490 50.000 0.00 0.00 37.67 3.86
3143 3450 4.527944 CTCCTTTTATCCCTTCCAGGAAC 58.472 47.826 0.00 0.00 40.04 3.62
3144 3451 3.920197 TCCTTTTATCCCTTCCAGGAACA 59.080 43.478 0.00 0.00 40.04 3.18
3258 3628 6.857451 GGGCAAATTTGTTGCATTCTAAAAAG 59.143 34.615 19.03 0.00 46.58 2.27
3259 3629 7.255070 GGGCAAATTTGTTGCATTCTAAAAAGA 60.255 33.333 19.03 0.00 46.58 2.52
3260 3630 8.127954 GGCAAATTTGTTGCATTCTAAAAAGAA 58.872 29.630 19.03 0.00 46.58 2.52
3275 3645 9.638239 TTCTAAAAAGAATAAACATCATGGTGC 57.362 29.630 5.69 0.00 0.00 5.01
3284 3654 2.970379 ATCATGGTGCGTCAGGGCA 61.970 57.895 0.00 0.00 41.45 5.36
3305 3675 7.455638 AGGGCATGCAACAATATATAGGAATTT 59.544 33.333 21.36 0.00 0.00 1.82
3306 3676 8.748412 GGGCATGCAACAATATATAGGAATTTA 58.252 33.333 21.36 0.00 0.00 1.40
3342 3713 0.404426 AACCTAAACCCAGCCCTCAC 59.596 55.000 0.00 0.00 0.00 3.51
3350 3721 3.374402 CAGCCCTCACGACCGTCT 61.374 66.667 0.00 0.00 0.00 4.18
3369 3740 1.374252 GTTCACGTGATCTGGCCGT 60.374 57.895 20.80 0.00 34.71 5.68
3370 3741 0.949105 GTTCACGTGATCTGGCCGTT 60.949 55.000 20.80 0.00 31.46 4.44
3371 3742 0.604073 TTCACGTGATCTGGCCGTTA 59.396 50.000 20.80 0.00 31.46 3.18
3372 3743 0.172578 TCACGTGATCTGGCCGTTAG 59.827 55.000 15.76 0.00 31.46 2.34
3373 3744 0.172578 CACGTGATCTGGCCGTTAGA 59.827 55.000 10.90 0.00 31.46 2.10
3374 3745 0.892755 ACGTGATCTGGCCGTTAGAA 59.107 50.000 0.00 0.00 0.00 2.10
3375 3746 1.480954 ACGTGATCTGGCCGTTAGAAT 59.519 47.619 0.00 0.00 0.00 2.40
3376 3747 2.093658 ACGTGATCTGGCCGTTAGAATT 60.094 45.455 0.00 0.00 0.00 2.17
3377 3748 2.936498 CGTGATCTGGCCGTTAGAATTT 59.064 45.455 0.00 0.00 0.00 1.82
3378 3749 3.374058 CGTGATCTGGCCGTTAGAATTTT 59.626 43.478 0.00 0.00 0.00 1.82
3379 3750 4.142687 CGTGATCTGGCCGTTAGAATTTTT 60.143 41.667 0.00 0.00 0.00 1.94
3400 3771 2.888834 TTTTTGAGCAACTTCTGGCC 57.111 45.000 0.00 0.00 0.00 5.36
3401 3772 0.667993 TTTTGAGCAACTTCTGGCCG 59.332 50.000 0.00 0.00 0.00 6.13
3402 3773 0.465460 TTTGAGCAACTTCTGGCCGT 60.465 50.000 0.00 0.00 0.00 5.68
3476 3847 2.573462 TGGCAGCTACTCCAGAAGAAAT 59.427 45.455 0.00 0.00 0.00 2.17
3511 3882 6.790319 TCTAGTTATTTGGGCCTTTTCTCTT 58.210 36.000 4.53 0.00 0.00 2.85
3546 3917 5.640357 CCAATTTGCTAACTACAGTCCGTTA 59.360 40.000 0.00 0.00 0.00 3.18
3623 3995 3.754091 GCAAGTTGCCGAAATCGC 58.246 55.556 17.36 0.00 37.42 4.58
3624 3996 1.210155 GCAAGTTGCCGAAATCGCT 59.790 52.632 17.36 0.00 37.42 4.93
3625 3997 0.446222 GCAAGTTGCCGAAATCGCTA 59.554 50.000 17.36 0.00 37.42 4.26
3626 3998 1.529826 GCAAGTTGCCGAAATCGCTAG 60.530 52.381 17.36 0.00 37.42 3.42
3627 3999 1.732259 CAAGTTGCCGAAATCGCTAGT 59.268 47.619 0.00 0.00 38.18 2.57
3628 4000 2.094762 AGTTGCCGAAATCGCTAGTT 57.905 45.000 0.00 0.00 38.18 2.24
3629 4001 1.732259 AGTTGCCGAAATCGCTAGTTG 59.268 47.619 0.00 0.00 38.18 3.16
3630 4002 1.730064 GTTGCCGAAATCGCTAGTTGA 59.270 47.619 0.00 0.00 38.18 3.18
3631 4003 2.309528 TGCCGAAATCGCTAGTTGAT 57.690 45.000 0.00 0.00 38.18 2.57
3632 4004 1.933181 TGCCGAAATCGCTAGTTGATG 59.067 47.619 0.00 0.00 38.18 3.07
3633 4005 2.201732 GCCGAAATCGCTAGTTGATGA 58.798 47.619 0.00 0.00 38.18 2.92
3634 4006 2.219674 GCCGAAATCGCTAGTTGATGAG 59.780 50.000 0.00 0.00 38.18 2.90
3635 4007 3.448686 CCGAAATCGCTAGTTGATGAGT 58.551 45.455 0.00 0.00 38.18 3.41
3636 4008 4.607955 CCGAAATCGCTAGTTGATGAGTA 58.392 43.478 0.00 0.00 38.18 2.59
3637 4009 4.441415 CCGAAATCGCTAGTTGATGAGTAC 59.559 45.833 0.00 0.00 38.18 2.73
3638 4010 5.274718 CGAAATCGCTAGTTGATGAGTACT 58.725 41.667 0.00 0.00 0.00 2.73
3639 4011 5.396947 CGAAATCGCTAGTTGATGAGTACTC 59.603 44.000 16.32 16.32 0.00 2.59
3640 4012 3.946308 TCGCTAGTTGATGAGTACTCG 57.054 47.619 17.85 2.84 0.00 4.18
3641 4013 3.268330 TCGCTAGTTGATGAGTACTCGT 58.732 45.455 17.60 17.60 0.00 4.18
3642 4014 3.688185 TCGCTAGTTGATGAGTACTCGTT 59.312 43.478 18.54 8.38 0.00 3.85
3643 4015 3.786576 CGCTAGTTGATGAGTACTCGTTG 59.213 47.826 18.54 6.85 0.00 4.10
3644 4016 3.548268 GCTAGTTGATGAGTACTCGTTGC 59.452 47.826 18.54 11.52 0.00 4.17
3645 4017 3.660501 AGTTGATGAGTACTCGTTGCA 57.339 42.857 18.54 10.30 0.00 4.08
3646 4018 3.990092 AGTTGATGAGTACTCGTTGCAA 58.010 40.909 18.54 15.26 0.00 4.08
3647 4019 4.377021 AGTTGATGAGTACTCGTTGCAAA 58.623 39.130 18.54 8.71 0.00 3.68
3648 4020 4.449068 AGTTGATGAGTACTCGTTGCAAAG 59.551 41.667 18.54 2.46 0.00 2.77
3649 4021 4.251543 TGATGAGTACTCGTTGCAAAGA 57.748 40.909 18.54 14.45 0.00 2.52
3650 4022 4.820897 TGATGAGTACTCGTTGCAAAGAT 58.179 39.130 18.54 8.63 0.00 2.40
3651 4023 4.864806 TGATGAGTACTCGTTGCAAAGATC 59.135 41.667 18.54 10.56 0.00 2.75
3652 4024 4.521130 TGAGTACTCGTTGCAAAGATCT 57.479 40.909 15.52 13.37 0.00 2.75
3653 4025 4.883083 TGAGTACTCGTTGCAAAGATCTT 58.117 39.130 15.52 0.88 0.00 2.40
3654 4026 4.923871 TGAGTACTCGTTGCAAAGATCTTC 59.076 41.667 15.52 11.13 0.00 2.87
3655 4027 4.883083 AGTACTCGTTGCAAAGATCTTCA 58.117 39.130 15.52 0.08 0.00 3.02
3656 4028 5.297547 AGTACTCGTTGCAAAGATCTTCAA 58.702 37.500 15.52 6.95 0.00 2.69
3657 4029 4.474226 ACTCGTTGCAAAGATCTTCAAC 57.526 40.909 21.65 21.65 36.42 3.18
3658 4030 4.130118 ACTCGTTGCAAAGATCTTCAACT 58.870 39.130 25.58 12.95 37.31 3.16
3659 4031 4.576463 ACTCGTTGCAAAGATCTTCAACTT 59.424 37.500 25.58 14.22 37.31 2.66
3660 4032 5.095691 TCGTTGCAAAGATCTTCAACTTC 57.904 39.130 25.58 10.25 37.31 3.01
3661 4033 4.024048 TCGTTGCAAAGATCTTCAACTTCC 60.024 41.667 25.58 10.00 37.31 3.46
3662 4034 4.550422 GTTGCAAAGATCTTCAACTTCCC 58.450 43.478 23.19 6.00 36.72 3.97
3663 4035 3.831323 TGCAAAGATCTTCAACTTCCCA 58.169 40.909 8.78 0.00 0.00 4.37
3664 4036 3.822735 TGCAAAGATCTTCAACTTCCCAG 59.177 43.478 8.78 0.00 0.00 4.45
3665 4037 3.192212 GCAAAGATCTTCAACTTCCCAGG 59.808 47.826 8.78 0.00 0.00 4.45
3666 4038 4.401925 CAAAGATCTTCAACTTCCCAGGT 58.598 43.478 8.78 0.00 0.00 4.00
3667 4039 4.731313 AAGATCTTCAACTTCCCAGGTT 57.269 40.909 0.88 0.00 0.00 3.50
3668 4040 4.026356 AGATCTTCAACTTCCCAGGTTG 57.974 45.455 0.00 0.00 43.57 3.77
3669 4041 1.981256 TCTTCAACTTCCCAGGTTGC 58.019 50.000 0.00 0.00 42.40 4.17
3670 4042 1.214175 TCTTCAACTTCCCAGGTTGCA 59.786 47.619 0.00 0.00 42.40 4.08
3671 4043 2.031120 CTTCAACTTCCCAGGTTGCAA 58.969 47.619 0.00 0.00 42.40 4.08
3672 4044 1.398692 TCAACTTCCCAGGTTGCAAC 58.601 50.000 21.59 21.59 42.40 4.17
3673 4045 1.110442 CAACTTCCCAGGTTGCAACA 58.890 50.000 29.55 7.20 37.76 3.33
3674 4046 1.480137 CAACTTCCCAGGTTGCAACAA 59.520 47.619 29.55 14.50 37.76 2.83
3675 4047 1.859302 ACTTCCCAGGTTGCAACAAA 58.141 45.000 29.55 14.20 0.00 2.83
3676 4048 2.397597 ACTTCCCAGGTTGCAACAAAT 58.602 42.857 29.55 13.10 0.00 2.32
3677 4049 2.102925 ACTTCCCAGGTTGCAACAAATG 59.897 45.455 29.55 22.58 0.00 2.32
3678 4050 1.047002 TCCCAGGTTGCAACAAATGG 58.953 50.000 29.55 28.59 0.00 3.16
3679 4051 0.603439 CCCAGGTTGCAACAAATGGC 60.603 55.000 28.82 14.93 31.22 4.40
3680 4052 0.945265 CCAGGTTGCAACAAATGGCG 60.945 55.000 29.55 10.29 0.00 5.69
3681 4053 1.300853 AGGTTGCAACAAATGGCGC 60.301 52.632 29.55 10.66 0.00 6.53
3682 4054 1.593750 GGTTGCAACAAATGGCGCA 60.594 52.632 29.55 0.00 0.00 6.09
3683 4055 1.564139 GTTGCAACAAATGGCGCAC 59.436 52.632 24.52 0.00 33.29 5.34
3684 4056 1.142531 TTGCAACAAATGGCGCACA 59.857 47.368 10.83 5.20 33.29 4.57
3685 4057 0.249784 TTGCAACAAATGGCGCACAT 60.250 45.000 10.83 7.73 43.07 3.21
3686 4058 0.944788 TGCAACAAATGGCGCACATG 60.945 50.000 10.83 4.84 40.44 3.21
3687 4059 1.782807 CAACAAATGGCGCACATGC 59.217 52.632 10.83 0.00 40.44 4.06
3688 4060 0.944788 CAACAAATGGCGCACATGCA 60.945 50.000 10.83 0.00 40.44 3.96
3689 4061 0.668096 AACAAATGGCGCACATGCAG 60.668 50.000 10.83 6.79 40.44 4.41
3690 4062 1.080366 CAAATGGCGCACATGCAGT 60.080 52.632 10.83 0.00 40.44 4.40
3698 4070 3.359523 CACATGCAGTGCGCCACT 61.360 61.111 11.20 5.73 46.51 4.00
3699 4071 2.595463 ACATGCAGTGCGCCACTT 60.595 55.556 11.20 0.00 42.59 3.16
3700 4072 2.126618 CATGCAGTGCGCCACTTG 60.127 61.111 11.20 0.51 42.59 3.16
3701 4073 2.595463 ATGCAGTGCGCCACTTGT 60.595 55.556 11.20 0.00 42.59 3.16
3702 4074 2.620112 ATGCAGTGCGCCACTTGTC 61.620 57.895 11.20 1.45 42.59 3.18
3703 4075 4.374702 GCAGTGCGCCACTTGTCG 62.375 66.667 4.18 0.00 42.59 4.35
3704 4076 4.374702 CAGTGCGCCACTTGTCGC 62.375 66.667 4.18 0.00 42.59 5.19
3709 4081 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
3710 4082 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
3711 4083 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
3712 4084 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
3713 4085 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
3714 4086 0.817634 CACTTGTCGCAACCTGGGAA 60.818 55.000 0.00 0.00 41.08 3.97
3715 4087 0.110486 ACTTGTCGCAACCTGGGAAT 59.890 50.000 0.00 0.00 41.08 3.01
3716 4088 1.247567 CTTGTCGCAACCTGGGAATT 58.752 50.000 0.00 0.00 41.08 2.17
3717 4089 1.613437 CTTGTCGCAACCTGGGAATTT 59.387 47.619 0.00 0.00 41.08 1.82
3718 4090 1.698506 TGTCGCAACCTGGGAATTTT 58.301 45.000 0.00 0.00 41.08 1.82
3719 4091 1.611491 TGTCGCAACCTGGGAATTTTC 59.389 47.619 0.00 0.00 41.08 2.29
3720 4092 1.067846 GTCGCAACCTGGGAATTTTCC 60.068 52.381 0.00 0.41 46.82 3.13
3748 4120 8.537049 TTTTTCGTAGATCCGTTTATTCAGAA 57.463 30.769 0.00 0.00 35.04 3.02
3749 4121 7.515957 TTTCGTAGATCCGTTTATTCAGAAC 57.484 36.000 0.00 0.00 35.04 3.01
3750 4122 5.268544 TCGTAGATCCGTTTATTCAGAACG 58.731 41.667 2.68 2.68 46.82 3.95
3751 4123 5.032863 CGTAGATCCGTTTATTCAGAACGT 58.967 41.667 8.33 0.00 46.09 3.99
3752 4124 5.514204 CGTAGATCCGTTTATTCAGAACGTT 59.486 40.000 0.00 0.00 46.09 3.99
3753 4125 6.034256 CGTAGATCCGTTTATTCAGAACGTTT 59.966 38.462 0.46 0.00 46.09 3.60
3754 4126 6.796705 AGATCCGTTTATTCAGAACGTTTT 57.203 33.333 0.46 0.00 46.09 2.43
3755 4127 7.894376 AGATCCGTTTATTCAGAACGTTTTA 57.106 32.000 0.46 0.00 46.09 1.52
3756 4128 8.488651 AGATCCGTTTATTCAGAACGTTTTAT 57.511 30.769 0.46 0.00 46.09 1.40
3757 4129 8.601476 AGATCCGTTTATTCAGAACGTTTTATC 58.399 33.333 0.46 0.00 46.09 1.75
3758 4130 7.894376 TCCGTTTATTCAGAACGTTTTATCT 57.106 32.000 0.46 0.00 46.09 1.98
3759 4131 8.314143 TCCGTTTATTCAGAACGTTTTATCTT 57.686 30.769 0.46 0.00 46.09 2.40
3760 4132 8.776470 TCCGTTTATTCAGAACGTTTTATCTTT 58.224 29.630 0.46 0.00 46.09 2.52
3761 4133 9.047871 CCGTTTATTCAGAACGTTTTATCTTTC 57.952 33.333 0.46 0.00 46.09 2.62
3762 4134 9.588774 CGTTTATTCAGAACGTTTTATCTTTCA 57.411 29.630 0.46 0.00 43.44 2.69
3767 4139 8.708075 TTCAGAACGTTTTATCTTTCAAATCG 57.292 30.769 0.46 0.00 35.35 3.34
3768 4140 6.795114 TCAGAACGTTTTATCTTTCAAATCGC 59.205 34.615 0.46 0.00 33.51 4.58
3769 4141 5.788531 AGAACGTTTTATCTTTCAAATCGCG 59.211 36.000 0.46 0.00 33.51 5.87
3770 4142 3.844099 ACGTTTTATCTTTCAAATCGCGC 59.156 39.130 0.00 0.00 33.51 6.86
3771 4143 3.063413 CGTTTTATCTTTCAAATCGCGCG 60.063 43.478 26.76 26.76 0.00 6.86
3772 4144 3.733024 TTTATCTTTCAAATCGCGCGT 57.267 38.095 30.98 14.63 0.00 6.01
3773 4145 3.733024 TTATCTTTCAAATCGCGCGTT 57.267 38.095 30.98 19.95 0.00 4.84
3774 4146 2.159467 ATCTTTCAAATCGCGCGTTC 57.841 45.000 30.98 0.00 0.00 3.95
3775 4147 0.862490 TCTTTCAAATCGCGCGTTCA 59.138 45.000 30.98 11.59 0.00 3.18
3776 4148 1.261885 TCTTTCAAATCGCGCGTTCAA 59.738 42.857 30.98 11.14 0.00 2.69
3777 4149 2.040524 CTTTCAAATCGCGCGTTCAAA 58.959 42.857 30.98 15.51 0.00 2.69
3778 4150 2.323939 TTCAAATCGCGCGTTCAAAT 57.676 40.000 30.98 12.88 0.00 2.32
3779 4151 1.877101 TCAAATCGCGCGTTCAAATC 58.123 45.000 30.98 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.169978 CTCCATCTGCATCAACCTCTCA 59.830 50.000 0.00 0.00 0.00 3.27
10 11 1.279846 TGTGAGCTCCATCTGCATCAA 59.720 47.619 12.15 0.00 0.00 2.57
33 34 4.820716 GCTGGATGTATCTGCTTTGATCTT 59.179 41.667 0.00 0.00 0.00 2.40
75 76 2.046411 CCGTACATGCTGCCACCA 60.046 61.111 0.00 0.00 0.00 4.17
78 79 4.794648 GGCCCGTACATGCTGCCA 62.795 66.667 0.00 0.00 41.76 4.92
82 83 2.903357 CTCAGGCCCGTACATGCT 59.097 61.111 0.00 0.00 0.00 3.79
96 97 1.277273 CTCAGGTTCATGTCCAGCTCA 59.723 52.381 11.03 0.00 0.00 4.26
102 103 5.069648 TCATCTGTATCTCAGGTTCATGTCC 59.930 44.000 0.00 0.00 43.76 4.02
158 160 2.024273 TGGTTTGTTTGGGTAACAGGGA 60.024 45.455 0.00 0.00 46.81 4.20
163 165 3.133183 ACATGGTGGTTTGTTTGGGTAAC 59.867 43.478 0.00 0.00 37.26 2.50
165 167 3.033659 ACATGGTGGTTTGTTTGGGTA 57.966 42.857 0.00 0.00 0.00 3.69
345 362 1.070758 CACCCAATGTATCCTCCCTCG 59.929 57.143 0.00 0.00 0.00 4.63
509 533 7.841956 TGTGAATGGTTAGTTTTTCCTCAAAA 58.158 30.769 0.00 0.00 31.50 2.44
540 564 1.737793 GTGTCACAGCCTTTTATCCCG 59.262 52.381 0.00 0.00 0.00 5.14
599 623 2.037641 CCAAGGCTGACATCCATCGATA 59.962 50.000 0.00 0.00 0.00 2.92
602 626 0.178767 TCCAAGGCTGACATCCATCG 59.821 55.000 0.00 0.00 0.00 3.84
641 665 2.364970 TGCATTTCTCCCACTTTGTTGG 59.635 45.455 0.00 0.00 36.26 3.77
714 853 8.352942 ACTTTTAACTTCATGTCACAGATTTCC 58.647 33.333 0.00 0.00 0.00 3.13
735 874 8.735692 ATTTGGTTTTGTGATGATCAACTTTT 57.264 26.923 0.00 0.00 0.00 2.27
822 961 3.385193 ACAAGGTTAAAATGGCACTGC 57.615 42.857 0.00 0.00 0.00 4.40
823 962 6.093357 ACAAAAACAAGGTTAAAATGGCACTG 59.907 34.615 0.00 0.00 0.00 3.66
824 963 6.093357 CACAAAAACAAGGTTAAAATGGCACT 59.907 34.615 0.00 0.00 0.00 4.40
826 965 6.173339 TCACAAAAACAAGGTTAAAATGGCA 58.827 32.000 0.00 0.00 0.00 4.92
827 966 6.238347 CCTCACAAAAACAAGGTTAAAATGGC 60.238 38.462 0.00 0.00 0.00 4.40
828 967 6.259829 CCCTCACAAAAACAAGGTTAAAATGG 59.740 38.462 0.00 0.00 0.00 3.16
829 968 6.821160 ACCCTCACAAAAACAAGGTTAAAATG 59.179 34.615 0.00 0.00 0.00 2.32
830 969 6.953101 ACCCTCACAAAAACAAGGTTAAAAT 58.047 32.000 0.00 0.00 0.00 1.82
835 978 6.361768 TTTTACCCTCACAAAAACAAGGTT 57.638 33.333 0.00 0.00 0.00 3.50
838 981 5.757808 CCCATTTTACCCTCACAAAAACAAG 59.242 40.000 0.00 0.00 0.00 3.16
872 1015 4.202253 TGCTTCAGAGTTCAGACTAGCAAA 60.202 41.667 0.00 0.00 39.54 3.68
954 1097 2.835431 ATCTCACGAGGAGGCGGG 60.835 66.667 8.56 0.00 44.19 6.13
955 1098 2.725008 GATCTCACGAGGAGGCGG 59.275 66.667 8.56 0.00 44.19 6.13
956 1099 1.791103 GAGGATCTCACGAGGAGGCG 61.791 65.000 8.56 0.00 44.19 5.52
957 1100 1.460273 GGAGGATCTCACGAGGAGGC 61.460 65.000 8.56 2.87 44.19 4.70
958 1101 0.825840 GGGAGGATCTCACGAGGAGG 60.826 65.000 8.56 0.00 44.19 4.30
959 1102 2.727103 GGGAGGATCTCACGAGGAG 58.273 63.158 0.00 0.00 45.49 3.69
1179 1337 4.733725 AGGGAGGCGGCCAGGTTA 62.734 66.667 23.09 0.00 0.00 2.85
1523 1681 1.661743 CGGAATTCACGCGAGCAAAAA 60.662 47.619 15.93 0.00 0.00 1.94
1558 1717 6.927416 AGCTAATTGCAATTTTGACTCATCA 58.073 32.000 28.45 6.86 45.94 3.07
1564 1725 7.799784 ACAAATGAGCTAATTGCAATTTTGAC 58.200 30.769 28.45 17.58 45.94 3.18
1567 1728 8.380743 TGAACAAATGAGCTAATTGCAATTTT 57.619 26.923 28.45 13.52 45.94 1.82
1587 1748 9.671279 ATCATACTGATAAGATTGTGTTGAACA 57.329 29.630 0.00 0.00 34.88 3.18
1632 1796 8.183104 TGAACTACACTAGAGAATATCATGGG 57.817 38.462 0.00 0.00 0.00 4.00
1689 1860 7.436118 AGAGTAATCGGTACTAGAGTGTAGAG 58.564 42.308 0.48 0.00 43.45 2.43
1690 1861 7.358770 AGAGTAATCGGTACTAGAGTGTAGA 57.641 40.000 0.48 0.00 43.45 2.59
1743 1914 5.702670 AGAACACTGACAATCAACCATACTG 59.297 40.000 0.00 0.00 0.00 2.74
1753 1924 1.537202 GGGCACAGAACACTGACAATC 59.463 52.381 0.00 0.00 35.80 2.67
1766 1937 0.971386 AAGCAAATCAAGGGGCACAG 59.029 50.000 0.00 0.00 0.00 3.66
1768 1939 0.968405 TCAAGCAAATCAAGGGGCAC 59.032 50.000 0.00 0.00 0.00 5.01
1816 1990 7.539292 TCTGAAATCCTTATGATCTAGGGAGA 58.461 38.462 8.58 0.00 35.71 3.71
1881 2055 1.674322 ATACCGGCCAAGTGCACAC 60.674 57.895 21.04 5.10 43.89 3.82
1889 2063 2.762554 CCATCCCCATACCGGCCAA 61.763 63.158 0.00 0.00 0.00 4.52
1890 2064 2.623297 TACCATCCCCATACCGGCCA 62.623 60.000 0.00 0.00 0.00 5.36
1891 2065 1.205460 ATACCATCCCCATACCGGCC 61.205 60.000 0.00 0.00 0.00 6.13
1968 2165 6.572519 AGAACAGCAGTAAGAAAATGCAAAA 58.427 32.000 0.00 0.00 42.45 2.44
1969 2166 6.147864 AGAACAGCAGTAAGAAAATGCAAA 57.852 33.333 0.00 0.00 42.45 3.68
2066 2267 8.128322 AGGGAGTACATTACAGATACATGATC 57.872 38.462 0.00 0.00 34.40 2.92
2090 2291 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2099 2300 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2102 2303 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2105 2306 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2107 2308 7.641020 AGTTTAATTTGAACTAAAACCACGACG 59.359 33.333 4.87 0.00 35.68 5.12
2118 2319 9.934190 GTCGTGGTTTTAGTTTAATTTGAACTA 57.066 29.630 9.11 9.11 38.28 2.24
2119 2320 7.641020 CGTCGTGGTTTTAGTTTAATTTGAACT 59.359 33.333 10.89 10.89 40.28 3.01
2120 2321 7.639461 TCGTCGTGGTTTTAGTTTAATTTGAAC 59.361 33.333 0.00 0.00 0.00 3.18
2123 2324 7.127686 ACTCGTCGTGGTTTTAGTTTAATTTG 58.872 34.615 0.00 0.00 0.00 2.32
2125 2326 6.849588 ACTCGTCGTGGTTTTAGTTTAATT 57.150 33.333 0.00 0.00 0.00 1.40
2126 2327 7.945033 TTACTCGTCGTGGTTTTAGTTTAAT 57.055 32.000 0.00 0.00 0.00 1.40
2127 2328 7.945033 ATTACTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
2128 2329 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
2129 2330 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
2130 2331 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2131 2332 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2132 2333 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2135 2336 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2136 2337 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2137 2338 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2138 2339 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2139 2340 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2140 2341 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2141 2342 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2145 2419 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2147 2421 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2150 2424 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
2153 2427 0.970937 CTGCTACTCCCTCCGTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
2158 2432 0.173708 GTTCACTGCTACTCCCTCCG 59.826 60.000 0.00 0.00 0.00 4.63
2230 2513 0.915364 GGCTGGGAAGGAATCAGACT 59.085 55.000 0.00 0.00 33.95 3.24
2233 2516 1.134159 CAGAGGCTGGGAAGGAATCAG 60.134 57.143 0.00 0.00 0.00 2.90
2238 2521 2.203983 TGCAGAGGCTGGGAAGGA 60.204 61.111 0.00 0.00 41.91 3.36
2239 2522 2.134630 AACTGCAGAGGCTGGGAAGG 62.135 60.000 23.35 0.00 42.66 3.46
2240 2523 0.251077 AAACTGCAGAGGCTGGGAAG 60.251 55.000 23.35 0.00 42.66 3.46
2258 2541 3.803021 GCATGAAACAGGGTTGAATGCAA 60.803 43.478 17.43 0.00 38.95 4.08
2293 2580 1.666189 GTAAAGATGAGCGGTTCAGCC 59.334 52.381 6.48 0.00 43.25 4.85
2294 2581 2.094417 GTGTAAAGATGAGCGGTTCAGC 59.906 50.000 1.60 1.60 42.55 4.26
2295 2582 3.369147 CAGTGTAAAGATGAGCGGTTCAG 59.631 47.826 0.18 0.00 39.68 3.02
2296 2583 3.325870 CAGTGTAAAGATGAGCGGTTCA 58.674 45.455 0.00 0.00 40.85 3.18
2297 2584 2.094417 GCAGTGTAAAGATGAGCGGTTC 59.906 50.000 0.00 0.00 0.00 3.62
2298 2585 2.076863 GCAGTGTAAAGATGAGCGGTT 58.923 47.619 0.00 0.00 0.00 4.44
2299 2586 1.276421 AGCAGTGTAAAGATGAGCGGT 59.724 47.619 0.00 0.00 0.00 5.68
2300 2587 2.015736 AGCAGTGTAAAGATGAGCGG 57.984 50.000 0.00 0.00 0.00 5.52
2304 2591 6.115446 CCCAAGATAAGCAGTGTAAAGATGA 58.885 40.000 0.00 0.00 0.00 2.92
2311 2598 5.278758 GCAAAAACCCAAGATAAGCAGTGTA 60.279 40.000 0.00 0.00 0.00 2.90
2312 2599 4.501400 GCAAAAACCCAAGATAAGCAGTGT 60.501 41.667 0.00 0.00 0.00 3.55
2314 2601 3.006859 GGCAAAAACCCAAGATAAGCAGT 59.993 43.478 0.00 0.00 0.00 4.40
2322 2609 2.962421 CCTACAAGGCAAAAACCCAAGA 59.038 45.455 0.00 0.00 0.00 3.02
2328 2615 4.379339 TCAACACCTACAAGGCAAAAAC 57.621 40.909 0.00 0.00 39.63 2.43
2353 2641 0.888736 CGATGGCTGTGACAAACCCA 60.889 55.000 2.25 2.34 0.00 4.51
2458 2746 0.612744 TGATGTCCTTGATGCCGTCA 59.387 50.000 0.00 0.00 34.25 4.35
2575 2863 1.699083 TCTGAATCTTCTGGCACCACA 59.301 47.619 0.00 0.00 0.00 4.17
2578 2866 1.280421 ACCTCTGAATCTTCTGGCACC 59.720 52.381 0.00 0.00 0.00 5.01
2621 2909 3.049674 CGTCAGCACCAACGGCAT 61.050 61.111 0.00 0.00 35.32 4.40
2764 3052 2.677979 GCTTCACCCGCCGAAGAAC 61.678 63.158 9.95 0.00 42.05 3.01
2959 3255 8.131455 ACATACATTTACTCTGCTAATGTTCG 57.869 34.615 0.00 0.00 41.36 3.95
3033 3332 1.956477 AGCCATGAACAACAACACTCC 59.044 47.619 0.00 0.00 0.00 3.85
3075 3374 2.158340 TCTCTCCCATCTCCTCTGGATG 60.158 54.545 0.00 0.00 39.94 3.51
3078 3377 2.091389 TCTTCTCTCCCATCTCCTCTGG 60.091 54.545 0.00 0.00 0.00 3.86
3079 3378 3.225104 CTCTTCTCTCCCATCTCCTCTG 58.775 54.545 0.00 0.00 0.00 3.35
3138 3445 1.331214 CTTGCAATGGGTGTGTTCCT 58.669 50.000 0.00 0.00 0.00 3.36
3139 3446 0.319813 GCTTGCAATGGGTGTGTTCC 60.320 55.000 0.00 0.00 0.00 3.62
3141 3448 1.047596 TGGCTTGCAATGGGTGTGTT 61.048 50.000 0.00 0.00 0.00 3.32
3143 3450 0.322322 AATGGCTTGCAATGGGTGTG 59.678 50.000 0.00 0.00 0.00 3.82
3144 3451 1.826720 CTAATGGCTTGCAATGGGTGT 59.173 47.619 0.00 0.00 0.00 4.16
3224 3532 2.928334 ACAAATTTGCCCACAATGCAA 58.072 38.095 18.12 0.00 46.30 4.08
3225 3533 2.617308 CAACAAATTTGCCCACAATGCA 59.383 40.909 18.12 0.00 35.21 3.96
3258 3628 4.496341 CCTGACGCACCATGATGTTTATTC 60.496 45.833 0.00 0.00 0.00 1.75
3259 3629 3.378112 CCTGACGCACCATGATGTTTATT 59.622 43.478 0.00 0.00 0.00 1.40
3260 3630 2.945008 CCTGACGCACCATGATGTTTAT 59.055 45.455 0.00 0.00 0.00 1.40
3275 3645 1.093972 TATTGTTGCATGCCCTGACG 58.906 50.000 16.68 0.00 0.00 4.35
3305 3675 7.716799 TTAGGTTCGGTTTTACTGTCCTATA 57.283 36.000 0.00 0.00 34.77 1.31
3306 3676 6.610075 TTAGGTTCGGTTTTACTGTCCTAT 57.390 37.500 0.00 0.00 34.77 2.57
3342 3713 0.386858 ATCACGTGAACAGACGGTCG 60.387 55.000 24.13 0.65 43.84 4.79
3350 3721 1.374125 CGGCCAGATCACGTGAACA 60.374 57.895 24.13 0.00 0.00 3.18
3381 3752 1.066908 CGGCCAGAAGTTGCTCAAAAA 59.933 47.619 2.24 0.00 0.00 1.94
3382 3753 0.667993 CGGCCAGAAGTTGCTCAAAA 59.332 50.000 2.24 0.00 0.00 2.44
3383 3754 0.465460 ACGGCCAGAAGTTGCTCAAA 60.465 50.000 2.24 0.00 0.00 2.69
3384 3755 0.465460 AACGGCCAGAAGTTGCTCAA 60.465 50.000 2.24 0.00 0.00 3.02
3385 3756 0.394938 TAACGGCCAGAAGTTGCTCA 59.605 50.000 2.24 0.00 0.00 4.26
3386 3757 1.079503 CTAACGGCCAGAAGTTGCTC 58.920 55.000 2.24 0.00 0.00 4.26
3387 3758 0.685097 TCTAACGGCCAGAAGTTGCT 59.315 50.000 2.24 0.00 0.00 3.91
3388 3759 1.398390 CATCTAACGGCCAGAAGTTGC 59.602 52.381 2.24 0.00 0.00 4.17
3389 3760 2.416547 CACATCTAACGGCCAGAAGTTG 59.583 50.000 2.24 4.24 0.00 3.16
3390 3761 2.699954 CACATCTAACGGCCAGAAGTT 58.300 47.619 2.24 0.50 0.00 2.66
3391 3762 1.676014 GCACATCTAACGGCCAGAAGT 60.676 52.381 2.24 0.00 0.00 3.01
3392 3763 1.009829 GCACATCTAACGGCCAGAAG 58.990 55.000 2.24 0.00 0.00 2.85
3393 3764 0.613260 AGCACATCTAACGGCCAGAA 59.387 50.000 2.24 0.00 0.00 3.02
3394 3765 0.108186 CAGCACATCTAACGGCCAGA 60.108 55.000 2.24 0.00 0.00 3.86
3395 3766 0.391661 ACAGCACATCTAACGGCCAG 60.392 55.000 2.24 0.00 0.00 4.85
3396 3767 0.391130 GACAGCACATCTAACGGCCA 60.391 55.000 2.24 0.00 0.00 5.36
3397 3768 0.391130 TGACAGCACATCTAACGGCC 60.391 55.000 0.00 0.00 0.00 6.13
3398 3769 1.002366 CTGACAGCACATCTAACGGC 58.998 55.000 0.00 0.00 0.00 5.68
3399 3770 2.370281 ACTGACAGCACATCTAACGG 57.630 50.000 1.25 0.00 0.00 4.44
3400 3771 4.024893 ACAAAACTGACAGCACATCTAACG 60.025 41.667 1.25 0.00 0.00 3.18
3401 3772 5.424121 ACAAAACTGACAGCACATCTAAC 57.576 39.130 1.25 0.00 0.00 2.34
3402 3773 5.822519 AGAACAAAACTGACAGCACATCTAA 59.177 36.000 1.25 0.00 0.00 2.10
3476 3847 5.130477 CCCAAATAACTAGAGGGCTCAGTTA 59.870 44.000 0.00 1.09 37.47 2.24
3511 3882 3.449746 AGCAAATTGGTAACTGGGCTA 57.550 42.857 0.00 0.00 37.61 3.93
3546 3917 0.611062 TCGACTGGACTCATTCCCGT 60.611 55.000 0.00 0.00 45.17 5.28
3549 3920 1.269309 CGGATCGACTGGACTCATTCC 60.269 57.143 0.00 0.00 46.13 3.01
3615 3987 5.274718 AGTACTCATCAACTAGCGATTTCG 58.725 41.667 0.00 0.00 43.27 3.46
3618 3990 4.335874 ACGAGTACTCATCAACTAGCGATT 59.664 41.667 22.37 0.00 0.00 3.34
3619 3991 3.878103 ACGAGTACTCATCAACTAGCGAT 59.122 43.478 22.37 0.00 0.00 4.58
3620 3992 3.268330 ACGAGTACTCATCAACTAGCGA 58.732 45.455 22.37 0.00 0.00 4.93
3621 3993 3.677190 ACGAGTACTCATCAACTAGCG 57.323 47.619 22.37 7.62 0.00 4.26
3622 3994 3.548268 GCAACGAGTACTCATCAACTAGC 59.452 47.826 22.37 10.16 0.00 3.42
3623 3995 4.733850 TGCAACGAGTACTCATCAACTAG 58.266 43.478 22.37 6.18 0.00 2.57
3624 3996 4.776795 TGCAACGAGTACTCATCAACTA 57.223 40.909 22.37 0.00 0.00 2.24
3625 3997 3.660501 TGCAACGAGTACTCATCAACT 57.339 42.857 22.37 0.00 0.00 3.16
3626 3998 4.447724 TCTTTGCAACGAGTACTCATCAAC 59.552 41.667 22.37 8.10 0.00 3.18
3627 3999 4.627058 TCTTTGCAACGAGTACTCATCAA 58.373 39.130 22.37 15.36 0.00 2.57
3628 4000 4.251543 TCTTTGCAACGAGTACTCATCA 57.748 40.909 22.37 10.71 0.00 3.07
3629 4001 5.105752 AGATCTTTGCAACGAGTACTCATC 58.894 41.667 22.37 13.33 0.00 2.92
3630 4002 5.078411 AGATCTTTGCAACGAGTACTCAT 57.922 39.130 22.37 4.34 0.00 2.90
3631 4003 4.521130 AGATCTTTGCAACGAGTACTCA 57.479 40.909 22.37 0.11 0.00 3.41
3632 4004 4.923871 TGAAGATCTTTGCAACGAGTACTC 59.076 41.667 13.18 13.18 0.00 2.59
3633 4005 4.883083 TGAAGATCTTTGCAACGAGTACT 58.117 39.130 9.87 0.00 0.00 2.73
3634 4006 5.177696 AGTTGAAGATCTTTGCAACGAGTAC 59.822 40.000 23.71 9.14 43.85 2.73
3635 4007 5.297547 AGTTGAAGATCTTTGCAACGAGTA 58.702 37.500 23.71 0.00 43.85 2.59
3636 4008 4.130118 AGTTGAAGATCTTTGCAACGAGT 58.870 39.130 23.71 11.73 43.85 4.18
3637 4009 4.739046 AGTTGAAGATCTTTGCAACGAG 57.261 40.909 23.71 1.70 43.85 4.18
3638 4010 4.024048 GGAAGTTGAAGATCTTTGCAACGA 60.024 41.667 23.71 8.20 43.85 3.85
3639 4011 4.222114 GGAAGTTGAAGATCTTTGCAACG 58.778 43.478 23.71 0.00 43.85 4.10
3640 4012 4.037923 TGGGAAGTTGAAGATCTTTGCAAC 59.962 41.667 23.09 23.09 40.54 4.17
3641 4013 4.214310 TGGGAAGTTGAAGATCTTTGCAA 58.786 39.130 9.87 7.43 0.00 4.08
3642 4014 3.822735 CTGGGAAGTTGAAGATCTTTGCA 59.177 43.478 9.87 0.69 0.00 4.08
3643 4015 3.192212 CCTGGGAAGTTGAAGATCTTTGC 59.808 47.826 9.87 3.29 0.00 3.68
3644 4016 4.401925 ACCTGGGAAGTTGAAGATCTTTG 58.598 43.478 9.87 0.00 0.00 2.77
3645 4017 4.731313 ACCTGGGAAGTTGAAGATCTTT 57.269 40.909 9.87 0.00 0.00 2.52
3646 4018 4.401925 CAACCTGGGAAGTTGAAGATCTT 58.598 43.478 7.95 7.95 46.03 2.40
3647 4019 3.812167 GCAACCTGGGAAGTTGAAGATCT 60.812 47.826 7.77 0.00 46.03 2.75
3648 4020 2.489722 GCAACCTGGGAAGTTGAAGATC 59.510 50.000 7.77 0.00 46.03 2.75
3649 4021 2.158475 TGCAACCTGGGAAGTTGAAGAT 60.158 45.455 7.77 0.00 46.03 2.40
3650 4022 1.214175 TGCAACCTGGGAAGTTGAAGA 59.786 47.619 7.77 0.00 46.03 2.87
3651 4023 1.691196 TGCAACCTGGGAAGTTGAAG 58.309 50.000 7.77 0.00 46.03 3.02
3652 4024 1.754226 GTTGCAACCTGGGAAGTTGAA 59.246 47.619 19.15 0.00 46.03 2.69
3653 4025 1.341482 TGTTGCAACCTGGGAAGTTGA 60.341 47.619 26.14 0.21 46.03 3.18
3654 4026 1.110442 TGTTGCAACCTGGGAAGTTG 58.890 50.000 26.14 0.00 45.92 3.16
3655 4027 1.859302 TTGTTGCAACCTGGGAAGTT 58.141 45.000 26.14 0.00 0.00 2.66
3656 4028 1.859302 TTTGTTGCAACCTGGGAAGT 58.141 45.000 26.14 0.00 0.00 3.01
3657 4029 2.548493 CCATTTGTTGCAACCTGGGAAG 60.548 50.000 26.14 9.74 0.00 3.46
3658 4030 1.415659 CCATTTGTTGCAACCTGGGAA 59.584 47.619 26.14 10.95 0.00 3.97
3659 4031 1.047002 CCATTTGTTGCAACCTGGGA 58.953 50.000 26.14 4.69 0.00 4.37
3660 4032 0.603439 GCCATTTGTTGCAACCTGGG 60.603 55.000 29.26 23.80 0.00 4.45
3661 4033 0.945265 CGCCATTTGTTGCAACCTGG 60.945 55.000 26.14 26.38 0.00 4.45
3662 4034 1.559149 GCGCCATTTGTTGCAACCTG 61.559 55.000 26.14 19.10 0.00 4.00
3663 4035 1.300853 GCGCCATTTGTTGCAACCT 60.301 52.632 26.14 8.74 0.00 3.50
3664 4036 1.593750 TGCGCCATTTGTTGCAACC 60.594 52.632 26.14 9.01 33.80 3.77
3665 4037 1.150567 TGTGCGCCATTTGTTGCAAC 61.151 50.000 22.83 22.83 39.34 4.17
3666 4038 0.249784 ATGTGCGCCATTTGTTGCAA 60.250 45.000 4.18 0.00 39.34 4.08
3667 4039 0.944788 CATGTGCGCCATTTGTTGCA 60.945 50.000 4.18 0.00 34.44 4.08
3668 4040 1.782807 CATGTGCGCCATTTGTTGC 59.217 52.632 4.18 0.00 0.00 4.17
3669 4041 0.944788 TGCATGTGCGCCATTTGTTG 60.945 50.000 4.18 0.00 45.83 3.33
3670 4042 0.668096 CTGCATGTGCGCCATTTGTT 60.668 50.000 4.18 0.00 45.83 2.83
3671 4043 1.080366 CTGCATGTGCGCCATTTGT 60.080 52.632 4.18 0.00 45.83 2.83
3672 4044 1.080366 ACTGCATGTGCGCCATTTG 60.080 52.632 4.18 0.00 45.83 2.32
3673 4045 1.080366 CACTGCATGTGCGCCATTT 60.080 52.632 4.18 0.00 45.83 2.32
3674 4046 2.569657 CACTGCATGTGCGCCATT 59.430 55.556 4.18 0.00 45.83 3.16
3681 4053 2.911484 AAGTGGCGCACTGCATGTG 61.911 57.895 10.83 10.75 44.62 3.21
3682 4054 2.595463 AAGTGGCGCACTGCATGT 60.595 55.556 10.83 0.00 44.62 3.21
3683 4055 2.126618 CAAGTGGCGCACTGCATG 60.127 61.111 10.83 2.94 44.62 4.06
3684 4056 2.595463 ACAAGTGGCGCACTGCAT 60.595 55.556 10.83 0.00 44.62 3.96
3685 4057 3.279116 GACAAGTGGCGCACTGCA 61.279 61.111 10.83 0.00 44.62 4.41
3686 4058 4.374702 CGACAAGTGGCGCACTGC 62.375 66.667 10.83 4.09 44.62 4.40
3693 4065 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
3694 4066 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
3695 4067 0.817634 TTCCCAGGTTGCGACAAGTG 60.818 55.000 6.39 0.00 0.00 3.16
3696 4068 0.110486 ATTCCCAGGTTGCGACAAGT 59.890 50.000 6.39 0.00 0.00 3.16
3697 4069 1.247567 AATTCCCAGGTTGCGACAAG 58.752 50.000 6.39 0.00 0.00 3.16
3698 4070 1.698506 AAATTCCCAGGTTGCGACAA 58.301 45.000 6.39 0.00 0.00 3.18
3699 4071 1.611491 GAAAATTCCCAGGTTGCGACA 59.389 47.619 6.39 0.00 0.00 4.35
3700 4072 1.067846 GGAAAATTCCCAGGTTGCGAC 60.068 52.381 0.43 0.00 41.62 5.19
3701 4073 1.253100 GGAAAATTCCCAGGTTGCGA 58.747 50.000 0.43 0.00 41.62 5.10
3702 4074 3.812577 GGAAAATTCCCAGGTTGCG 57.187 52.632 0.43 0.00 41.62 4.85
3723 4095 8.437742 GTTCTGAATAAACGGATCTACGAAAAA 58.562 33.333 0.00 0.00 37.61 1.94
3724 4096 7.201376 CGTTCTGAATAAACGGATCTACGAAAA 60.201 37.037 0.00 0.00 44.27 2.29
3725 4097 6.252015 CGTTCTGAATAAACGGATCTACGAAA 59.748 38.462 0.00 0.00 44.27 3.46
3726 4098 5.740569 CGTTCTGAATAAACGGATCTACGAA 59.259 40.000 0.00 0.00 44.27 3.85
3727 4099 5.268544 CGTTCTGAATAAACGGATCTACGA 58.731 41.667 0.00 0.00 44.27 3.43
3728 4100 5.541766 CGTTCTGAATAAACGGATCTACG 57.458 43.478 0.00 0.00 44.27 3.51
3741 4113 9.329913 CGATTTGAAAGATAAAACGTTCTGAAT 57.670 29.630 0.00 0.00 31.45 2.57
3742 4114 7.322699 GCGATTTGAAAGATAAAACGTTCTGAA 59.677 33.333 0.00 0.00 36.23 3.02
3743 4115 6.795114 GCGATTTGAAAGATAAAACGTTCTGA 59.205 34.615 0.00 0.00 36.23 3.27
3744 4116 6.236684 CGCGATTTGAAAGATAAAACGTTCTG 60.237 38.462 0.00 0.00 36.23 3.02
3745 4117 5.788531 CGCGATTTGAAAGATAAAACGTTCT 59.211 36.000 0.00 0.00 36.23 3.01
3746 4118 5.494948 GCGCGATTTGAAAGATAAAACGTTC 60.495 40.000 12.10 0.00 36.23 3.95
3747 4119 4.319901 GCGCGATTTGAAAGATAAAACGTT 59.680 37.500 12.10 0.00 36.23 3.99
3748 4120 3.844099 GCGCGATTTGAAAGATAAAACGT 59.156 39.130 12.10 0.00 36.23 3.99
3749 4121 3.063413 CGCGCGATTTGAAAGATAAAACG 60.063 43.478 28.94 0.00 36.70 3.60
3750 4122 3.844099 ACGCGCGATTTGAAAGATAAAAC 59.156 39.130 39.36 0.00 0.00 2.43
3751 4123 4.073169 ACGCGCGATTTGAAAGATAAAA 57.927 36.364 39.36 0.00 0.00 1.52
3752 4124 3.733024 ACGCGCGATTTGAAAGATAAA 57.267 38.095 39.36 0.00 0.00 1.40
3753 4125 3.123790 TGAACGCGCGATTTGAAAGATAA 59.876 39.130 39.36 3.47 0.00 1.75
3754 4126 2.668945 TGAACGCGCGATTTGAAAGATA 59.331 40.909 39.36 5.72 0.00 1.98
3755 4127 1.463056 TGAACGCGCGATTTGAAAGAT 59.537 42.857 39.36 6.60 0.00 2.40
3756 4128 0.862490 TGAACGCGCGATTTGAAAGA 59.138 45.000 39.36 6.12 0.00 2.52
3757 4129 1.669184 TTGAACGCGCGATTTGAAAG 58.331 45.000 39.36 3.76 0.00 2.62
3758 4130 2.106750 TTTGAACGCGCGATTTGAAA 57.893 40.000 39.36 23.87 0.00 2.69
3759 4131 2.238363 GATTTGAACGCGCGATTTGAA 58.762 42.857 39.36 19.09 0.00 2.69
3760 4132 1.877101 GATTTGAACGCGCGATTTGA 58.123 45.000 39.36 19.07 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.