Multiple sequence alignment - TraesCS7A01G014400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G014400 chr7A 100.000 2285 0 0 1 2285 6424385 6426669 0.000000e+00 4220.0
1 TraesCS7A01G014400 chr7A 86.410 390 47 5 510 897 184036446 184036061 2.710000e-114 422.0
2 TraesCS7A01G014400 chr7A 89.744 117 11 1 1678 1794 5156400 5156515 5.090000e-32 148.0
3 TraesCS7A01G014400 chr2D 95.890 511 17 2 1 508 58735606 58736115 0.000000e+00 824.0
4 TraesCS7A01G014400 chr2D 94.608 408 13 2 1887 2285 58737242 58737649 6.930000e-175 623.0
5 TraesCS7A01G014400 chr2D 90.491 326 25 5 580 903 467157791 467158112 2.100000e-115 425.0
6 TraesCS7A01G014400 chr2D 95.618 251 9 2 1556 1805 58736994 58737243 3.540000e-108 401.0
7 TraesCS7A01G014400 chr2D 87.977 341 31 6 1955 2285 606570565 606570905 5.920000e-106 394.0
8 TraesCS7A01G014400 chr2D 84.899 298 30 8 215 499 57334266 57334561 1.030000e-73 287.0
9 TraesCS7A01G014400 chr2D 96.364 55 2 0 1461 1515 58736937 58736991 8.690000e-15 91.6
10 TraesCS7A01G014400 chr5B 88.867 512 47 5 868 1371 31423136 31423645 2.490000e-174 621.0
11 TraesCS7A01G014400 chr5B 89.169 397 37 6 510 903 230015185 230014792 7.340000e-135 490.0
12 TraesCS7A01G014400 chr5B 88.642 405 40 3 1887 2285 700566466 700566062 2.640000e-134 488.0
13 TraesCS7A01G014400 chr5B 94.400 125 7 0 1681 1805 700566589 700566465 2.320000e-45 193.0
14 TraesCS7A01G014400 chr3A 88.452 407 30 9 1887 2285 699629119 699628722 2.050000e-130 475.0
15 TraesCS7A01G014400 chr3A 86.339 366 31 12 1930 2285 185169018 185168662 4.610000e-102 381.0
16 TraesCS7A01G014400 chr3A 92.040 201 9 3 20 214 13858859 13859058 2.240000e-70 276.0
17 TraesCS7A01G014400 chr3A 92.308 143 8 3 1664 1805 699629258 699629118 1.380000e-47 200.0
18 TraesCS7A01G014400 chr2B 87.990 408 40 5 1887 2285 571337873 571338280 7.390000e-130 473.0
19 TraesCS7A01G014400 chr2B 87.154 397 44 7 510 903 701750161 701749769 5.790000e-121 444.0
20 TraesCS7A01G014400 chr7B 88.384 396 38 6 510 903 559138824 559138435 9.560000e-129 470.0
21 TraesCS7A01G014400 chr2A 87.224 407 33 8 1887 2285 741830625 741830230 1.610000e-121 446.0
22 TraesCS7A01G014400 chr2A 85.258 407 48 8 500 903 7003864 7004261 2.110000e-110 409.0
23 TraesCS7A01G014400 chr2A 75.728 206 35 13 515 714 504360462 504360266 3.130000e-14 89.8
24 TraesCS7A01G014400 chr2A 94.000 50 3 0 516 565 158182884 158182933 2.430000e-10 76.8
25 TraesCS7A01G014400 chr2A 88.136 59 7 0 517 575 779498107 779498165 1.130000e-08 71.3
26 TraesCS7A01G014400 chr6A 86.582 395 46 5 510 903 536221450 536221062 1.620000e-116 429.0
27 TraesCS7A01G014400 chr1B 87.714 350 39 4 556 903 623815613 623815266 2.730000e-109 405.0
28 TraesCS7A01G014400 chr1D 85.833 360 42 8 547 903 69199053 69198700 7.710000e-100 374.0
29 TraesCS7A01G014400 chr4A 82.567 413 38 12 1887 2285 556695739 556695347 1.310000e-87 333.0
30 TraesCS7A01G014400 chr4A 92.742 124 9 0 1682 1805 556695861 556695738 1.800000e-41 180.0
31 TraesCS7A01G014400 chr7D 84.639 332 41 9 1958 2285 563103452 563103777 2.830000e-84 322.0
32 TraesCS7A01G014400 chr7D 90.299 134 11 2 1673 1805 563103211 563103343 8.390000e-40 174.0
33 TraesCS7A01G014400 chr7D 89.916 119 11 1 1682 1800 134766316 134766433 3.930000e-33 152.0
34 TraesCS7A01G014400 chr5A 89.904 208 15 3 9 216 311003367 311003166 1.740000e-66 263.0
35 TraesCS7A01G014400 chr5A 89.697 165 10 1 2128 2285 473360164 473360328 1.070000e-48 204.0
36 TraesCS7A01G014400 chr6B 86.735 196 24 2 20 214 331017396 331017202 1.370000e-52 217.0
37 TraesCS7A01G014400 chr3D 85.308 211 17 5 20 223 416409738 416409535 2.980000e-49 206.0
38 TraesCS7A01G014400 chr4B 96.000 125 2 3 1678 1802 653444647 653444526 1.380000e-47 200.0
39 TraesCS7A01G014400 chr6D 88.095 126 14 1 1678 1803 127392149 127392025 5.090000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G014400 chr7A 6424385 6426669 2284 False 4220.0 4220 100.0000 1 2285 1 chr7A.!!$F2 2284
1 TraesCS7A01G014400 chr2D 58735606 58737649 2043 False 484.9 824 95.6200 1 2285 4 chr2D.!!$F4 2284
2 TraesCS7A01G014400 chr5B 31423136 31423645 509 False 621.0 621 88.8670 868 1371 1 chr5B.!!$F1 503
3 TraesCS7A01G014400 chr5B 700566062 700566589 527 True 340.5 488 91.5210 1681 2285 2 chr5B.!!$R2 604
4 TraesCS7A01G014400 chr3A 699628722 699629258 536 True 337.5 475 90.3800 1664 2285 2 chr3A.!!$R2 621
5 TraesCS7A01G014400 chr4A 556695347 556695861 514 True 256.5 333 87.6545 1682 2285 2 chr4A.!!$R1 603
6 TraesCS7A01G014400 chr7D 563103211 563103777 566 False 248.0 322 87.4690 1673 2285 2 chr7D.!!$F2 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 817 0.026285 GCAACGGATCCGACGAATTG 59.974 55.0 39.55 30.12 42.83 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 2589 1.071542 TCCGAAACTGATTGTCCTGCA 59.928 47.619 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.491766 ATGTAGGAGAAGAGGTTGGGA 57.508 47.619 0.00 0.00 0.00 4.37
125 126 9.892130 GGAGATAAGAAGGAAAAATAAGAGTGA 57.108 33.333 0.00 0.00 0.00 3.41
312 313 5.036117 ACGTATGTTAGGGCATCTTCAAT 57.964 39.130 0.00 0.00 0.00 2.57
322 323 2.484889 GCATCTTCAATACGGACCCTC 58.515 52.381 0.00 0.00 0.00 4.30
330 331 2.088950 ATACGGACCCTCAAAACACG 57.911 50.000 0.00 0.00 0.00 4.49
338 339 1.573932 CTCAAAACACGCGCATCCA 59.426 52.632 5.73 0.00 0.00 3.41
341 342 0.040514 CAAAACACGCGCATCCAGAA 60.041 50.000 5.73 0.00 0.00 3.02
346 347 2.809174 CGCGCATCCAGAACGACA 60.809 61.111 8.75 0.00 0.00 4.35
362 363 6.092670 CAGAACGACATATCCAAACACATTCT 59.907 38.462 0.00 0.00 0.00 2.40
374 375 3.126001 ACACATTCTGTCATCCAACGT 57.874 42.857 0.00 0.00 0.00 3.99
385 386 3.131577 GTCATCCAACGTGGTATCCTACA 59.868 47.826 0.00 0.00 39.03 2.74
387 388 2.104967 TCCAACGTGGTATCCTACAGG 58.895 52.381 0.00 0.00 39.03 4.00
388 389 1.829222 CCAACGTGGTATCCTACAGGT 59.171 52.381 0.00 0.00 37.30 4.00
389 390 2.159142 CCAACGTGGTATCCTACAGGTC 60.159 54.545 0.00 0.00 34.96 3.85
390 391 1.772836 ACGTGGTATCCTACAGGTCC 58.227 55.000 0.00 0.00 36.34 4.46
391 392 1.006281 ACGTGGTATCCTACAGGTCCA 59.994 52.381 0.00 1.08 36.34 4.02
436 440 0.387929 ACGTGATGACAACTCGGTGT 59.612 50.000 11.13 0.00 0.00 4.16
511 515 9.476202 TTCTAATTTTCTGCTTTTTCTTTAGGC 57.524 29.630 0.00 0.00 0.00 3.93
512 516 8.637986 TCTAATTTTCTGCTTTTTCTTTAGGCA 58.362 29.630 0.00 0.00 0.00 4.75
513 517 9.260002 CTAATTTTCTGCTTTTTCTTTAGGCAA 57.740 29.630 0.00 0.00 32.43 4.52
514 518 6.902224 TTTTCTGCTTTTTCTTTAGGCAAC 57.098 33.333 0.00 0.00 32.43 4.17
515 519 4.223320 TCTGCTTTTTCTTTAGGCAACG 57.777 40.909 0.00 0.00 46.39 4.10
516 520 2.726241 CTGCTTTTTCTTTAGGCAACGC 59.274 45.455 0.00 0.00 46.39 4.84
517 521 2.360801 TGCTTTTTCTTTAGGCAACGCT 59.639 40.909 0.00 0.00 46.39 5.07
518 522 3.566322 TGCTTTTTCTTTAGGCAACGCTA 59.434 39.130 0.00 0.00 46.39 4.26
519 523 3.912563 GCTTTTTCTTTAGGCAACGCTAC 59.087 43.478 0.00 0.00 46.39 3.58
520 524 3.799137 TTTTCTTTAGGCAACGCTACG 57.201 42.857 0.00 0.00 46.39 3.51
521 525 1.073177 TTCTTTAGGCAACGCTACGC 58.927 50.000 0.00 0.00 46.39 4.42
538 542 4.514577 CGTCGGCTGGCGGATCTT 62.515 66.667 23.59 0.00 0.00 2.40
539 543 2.125106 GTCGGCTGGCGGATCTTT 60.125 61.111 23.59 0.00 0.00 2.52
540 544 1.745489 GTCGGCTGGCGGATCTTTT 60.745 57.895 23.59 0.00 0.00 2.27
541 545 1.002624 TCGGCTGGCGGATCTTTTT 60.003 52.632 23.59 0.00 0.00 1.94
542 546 0.250793 TCGGCTGGCGGATCTTTTTA 59.749 50.000 23.59 0.00 0.00 1.52
543 547 1.091537 CGGCTGGCGGATCTTTTTAA 58.908 50.000 16.53 0.00 0.00 1.52
544 548 1.470890 CGGCTGGCGGATCTTTTTAAA 59.529 47.619 16.53 0.00 0.00 1.52
545 549 2.094957 CGGCTGGCGGATCTTTTTAAAA 60.095 45.455 16.53 0.00 0.00 1.52
546 550 3.511699 GGCTGGCGGATCTTTTTAAAAG 58.488 45.455 10.89 10.89 0.00 2.27
547 551 3.192633 GGCTGGCGGATCTTTTTAAAAGA 59.807 43.478 20.42 20.42 0.00 2.52
548 552 4.142160 GGCTGGCGGATCTTTTTAAAAGAT 60.142 41.667 26.87 26.87 39.53 2.40
555 559 3.481112 TCTTTTTAAAAGATCCGCCGC 57.519 42.857 15.24 0.00 0.00 6.53
556 560 2.162809 TCTTTTTAAAAGATCCGCCGCC 59.837 45.455 15.24 0.00 0.00 6.13
557 561 1.828979 TTTTAAAAGATCCGCCGCCT 58.171 45.000 0.00 0.00 0.00 5.52
558 562 1.375551 TTTAAAAGATCCGCCGCCTC 58.624 50.000 0.00 0.00 0.00 4.70
559 563 0.250793 TTAAAAGATCCGCCGCCTCA 59.749 50.000 0.00 0.00 0.00 3.86
560 564 0.461339 TAAAAGATCCGCCGCCTCAC 60.461 55.000 0.00 0.00 0.00 3.51
561 565 4.514577 AAGATCCGCCGCCTCACG 62.515 66.667 0.00 0.00 43.15 4.35
571 575 3.604629 GCCTCACGAGCTGTAGGA 58.395 61.111 0.00 0.00 0.00 2.94
572 576 2.119886 GCCTCACGAGCTGTAGGAT 58.880 57.895 0.00 0.00 0.00 3.24
573 577 0.461961 GCCTCACGAGCTGTAGGATT 59.538 55.000 0.00 0.00 0.00 3.01
574 578 1.681793 GCCTCACGAGCTGTAGGATTA 59.318 52.381 0.00 0.00 0.00 1.75
575 579 2.287909 GCCTCACGAGCTGTAGGATTAG 60.288 54.545 0.00 0.00 0.00 1.73
576 580 2.294791 CCTCACGAGCTGTAGGATTAGG 59.705 54.545 0.00 0.00 0.00 2.69
577 581 1.681793 TCACGAGCTGTAGGATTAGGC 59.318 52.381 0.00 0.00 0.00 3.93
578 582 1.409064 CACGAGCTGTAGGATTAGGCA 59.591 52.381 0.00 0.00 0.00 4.75
579 583 1.683917 ACGAGCTGTAGGATTAGGCAG 59.316 52.381 0.00 0.00 0.00 4.85
580 584 1.957177 CGAGCTGTAGGATTAGGCAGA 59.043 52.381 0.00 0.00 0.00 4.26
581 585 2.560542 CGAGCTGTAGGATTAGGCAGAT 59.439 50.000 0.00 0.00 0.00 2.90
582 586 3.006323 CGAGCTGTAGGATTAGGCAGATT 59.994 47.826 0.00 0.00 0.00 2.40
583 587 4.502259 CGAGCTGTAGGATTAGGCAGATTT 60.502 45.833 0.00 0.00 0.00 2.17
584 588 5.279006 CGAGCTGTAGGATTAGGCAGATTTA 60.279 44.000 0.00 0.00 0.00 1.40
585 589 6.573289 CGAGCTGTAGGATTAGGCAGATTTAT 60.573 42.308 0.00 0.00 0.00 1.40
586 590 7.084268 AGCTGTAGGATTAGGCAGATTTATT 57.916 36.000 0.00 0.00 0.00 1.40
587 591 6.939163 AGCTGTAGGATTAGGCAGATTTATTG 59.061 38.462 0.00 0.00 0.00 1.90
588 592 6.936900 GCTGTAGGATTAGGCAGATTTATTGA 59.063 38.462 0.00 0.00 0.00 2.57
589 593 7.095017 GCTGTAGGATTAGGCAGATTTATTGAC 60.095 40.741 0.00 0.00 0.00 3.18
590 594 8.034313 TGTAGGATTAGGCAGATTTATTGACT 57.966 34.615 0.00 0.00 37.71 3.41
591 595 9.154632 TGTAGGATTAGGCAGATTTATTGACTA 57.845 33.333 0.00 0.00 35.08 2.59
592 596 9.998106 GTAGGATTAGGCAGATTTATTGACTAA 57.002 33.333 3.29 3.29 46.91 2.24
594 598 7.663493 AGGATTAGGCAGATTTATTGACTAAGC 59.337 37.037 7.40 7.40 46.29 3.09
595 599 6.844696 TTAGGCAGATTTATTGACTAAGCG 57.155 37.500 0.00 0.00 40.35 4.68
596 600 4.770795 AGGCAGATTTATTGACTAAGCGT 58.229 39.130 0.00 0.00 30.35 5.07
597 601 4.811557 AGGCAGATTTATTGACTAAGCGTC 59.188 41.667 0.00 0.00 43.14 5.19
598 602 4.318121 GGCAGATTTATTGACTAAGCGTCG 60.318 45.833 0.00 0.00 45.87 5.12
599 603 4.267928 GCAGATTTATTGACTAAGCGTCGT 59.732 41.667 0.00 0.00 45.87 4.34
600 604 5.220416 GCAGATTTATTGACTAAGCGTCGTT 60.220 40.000 0.00 0.00 45.87 3.85
601 605 6.403615 CAGATTTATTGACTAAGCGTCGTTC 58.596 40.000 0.00 0.00 45.87 3.95
602 606 6.253727 CAGATTTATTGACTAAGCGTCGTTCT 59.746 38.462 0.00 0.00 45.87 3.01
603 607 6.812160 AGATTTATTGACTAAGCGTCGTTCTT 59.188 34.615 0.00 0.00 45.87 2.52
604 608 6.774354 TTTATTGACTAAGCGTCGTTCTTT 57.226 33.333 0.00 0.00 45.87 2.52
605 609 7.872163 TTTATTGACTAAGCGTCGTTCTTTA 57.128 32.000 0.00 0.00 45.87 1.85
606 610 8.470040 TTTATTGACTAAGCGTCGTTCTTTAT 57.530 30.769 0.00 0.00 45.87 1.40
607 611 6.963049 ATTGACTAAGCGTCGTTCTTTATT 57.037 33.333 0.00 0.00 45.87 1.40
608 612 9.571810 TTATTGACTAAGCGTCGTTCTTTATTA 57.428 29.630 0.00 0.00 45.87 0.98
609 613 8.644318 ATTGACTAAGCGTCGTTCTTTATTAT 57.356 30.769 0.00 0.00 45.87 1.28
610 614 8.470040 TTGACTAAGCGTCGTTCTTTATTATT 57.530 30.769 0.00 0.00 45.87 1.40
611 615 7.891782 TGACTAAGCGTCGTTCTTTATTATTG 58.108 34.615 0.00 0.00 45.87 1.90
612 616 6.702897 ACTAAGCGTCGTTCTTTATTATTGC 58.297 36.000 0.00 0.00 0.00 3.56
613 617 5.539582 AAGCGTCGTTCTTTATTATTGCA 57.460 34.783 0.00 0.00 0.00 4.08
614 618 5.539582 AGCGTCGTTCTTTATTATTGCAA 57.460 34.783 0.00 0.00 0.00 4.08
615 619 5.321516 AGCGTCGTTCTTTATTATTGCAAC 58.678 37.500 0.00 0.00 0.00 4.17
616 620 5.083389 GCGTCGTTCTTTATTATTGCAACA 58.917 37.500 0.00 0.00 0.00 3.33
617 621 5.002189 GCGTCGTTCTTTATTATTGCAACAC 59.998 40.000 0.00 0.00 0.00 3.32
618 622 6.074642 CGTCGTTCTTTATTATTGCAACACA 58.925 36.000 0.00 0.00 0.00 3.72
619 623 6.246332 CGTCGTTCTTTATTATTGCAACACAG 59.754 38.462 0.00 0.00 0.00 3.66
620 624 6.523201 GTCGTTCTTTATTATTGCAACACAGG 59.477 38.462 0.00 0.00 0.00 4.00
621 625 6.205853 TCGTTCTTTATTATTGCAACACAGGT 59.794 34.615 0.00 0.00 0.00 4.00
622 626 6.861055 CGTTCTTTATTATTGCAACACAGGTT 59.139 34.615 0.00 0.00 37.87 3.50
632 636 3.820590 CACAGGTTGTGTTGCGGA 58.179 55.556 1.13 0.00 43.08 5.54
633 637 2.102554 CACAGGTTGTGTTGCGGAA 58.897 52.632 1.13 0.00 43.08 4.30
634 638 0.453793 CACAGGTTGTGTTGCGGAAA 59.546 50.000 0.00 0.00 43.08 3.13
635 639 1.135257 CACAGGTTGTGTTGCGGAAAA 60.135 47.619 0.00 0.00 43.08 2.29
636 640 1.754226 ACAGGTTGTGTTGCGGAAAAT 59.246 42.857 0.00 0.00 34.94 1.82
637 641 2.223711 ACAGGTTGTGTTGCGGAAAATC 60.224 45.455 0.00 0.00 34.94 2.17
638 642 2.034558 CAGGTTGTGTTGCGGAAAATCT 59.965 45.455 0.00 0.00 0.00 2.40
639 643 2.293399 AGGTTGTGTTGCGGAAAATCTC 59.707 45.455 0.00 0.00 0.00 2.75
640 644 2.293399 GGTTGTGTTGCGGAAAATCTCT 59.707 45.455 0.00 0.00 0.00 3.10
641 645 3.300009 GTTGTGTTGCGGAAAATCTCTG 58.700 45.455 0.00 0.00 0.00 3.35
649 653 2.523015 CGGAAAATCTCTGCAACATGC 58.477 47.619 0.00 0.00 45.29 4.06
668 672 6.932901 CATGCGTCATGTTACAGAAATTTT 57.067 33.333 10.49 0.00 37.12 1.82
669 673 7.337150 CATGCGTCATGTTACAGAAATTTTT 57.663 32.000 10.49 0.00 37.12 1.94
670 674 6.746104 TGCGTCATGTTACAGAAATTTTTG 57.254 33.333 7.15 7.15 0.00 2.44
671 675 5.174761 TGCGTCATGTTACAGAAATTTTTGC 59.825 36.000 8.55 0.00 0.00 3.68
672 676 5.174761 GCGTCATGTTACAGAAATTTTTGCA 59.825 36.000 8.55 0.05 0.00 4.08
673 677 6.292061 GCGTCATGTTACAGAAATTTTTGCAA 60.292 34.615 8.55 0.00 0.00 4.08
674 678 7.569226 GCGTCATGTTACAGAAATTTTTGCAAT 60.569 33.333 8.55 0.00 0.00 3.56
675 679 8.910666 CGTCATGTTACAGAAATTTTTGCAATA 58.089 29.630 8.55 1.59 0.00 1.90
717 721 2.435372 TTTTGCAACAGAGGTCCACT 57.565 45.000 0.00 0.00 0.00 4.00
718 722 1.679139 TTTGCAACAGAGGTCCACTG 58.321 50.000 14.19 14.19 40.68 3.66
719 723 0.819259 TTGCAACAGAGGTCCACTGC 60.819 55.000 15.54 4.36 38.74 4.40
720 724 1.227943 GCAACAGAGGTCCACTGCA 60.228 57.895 15.54 0.00 38.74 4.41
721 725 0.819259 GCAACAGAGGTCCACTGCAA 60.819 55.000 15.54 0.00 38.74 4.08
722 726 1.679139 CAACAGAGGTCCACTGCAAA 58.321 50.000 15.54 0.00 38.74 3.68
723 727 2.023673 CAACAGAGGTCCACTGCAAAA 58.976 47.619 15.54 0.00 38.74 2.44
724 728 2.624838 CAACAGAGGTCCACTGCAAAAT 59.375 45.455 15.54 0.00 38.74 1.82
725 729 3.788227 ACAGAGGTCCACTGCAAAATA 57.212 42.857 15.54 0.00 38.74 1.40
726 730 4.098914 ACAGAGGTCCACTGCAAAATAA 57.901 40.909 15.54 0.00 38.74 1.40
727 731 4.666512 ACAGAGGTCCACTGCAAAATAAT 58.333 39.130 15.54 0.00 38.74 1.28
728 732 5.079643 ACAGAGGTCCACTGCAAAATAATT 58.920 37.500 15.54 0.00 38.74 1.40
729 733 6.245408 ACAGAGGTCCACTGCAAAATAATTA 58.755 36.000 15.54 0.00 38.74 1.40
730 734 6.891908 ACAGAGGTCCACTGCAAAATAATTAT 59.108 34.615 15.54 0.00 38.74 1.28
731 735 7.397192 ACAGAGGTCCACTGCAAAATAATTATT 59.603 33.333 15.54 4.81 38.74 1.40
732 736 8.253113 CAGAGGTCCACTGCAAAATAATTATTT 58.747 33.333 16.15 16.15 37.49 1.40
733 737 8.815912 AGAGGTCCACTGCAAAATAATTATTTT 58.184 29.630 24.23 24.23 44.27 1.82
734 738 9.435688 GAGGTCCACTGCAAAATAATTATTTTT 57.564 29.630 26.37 14.06 42.26 1.94
735 739 9.218440 AGGTCCACTGCAAAATAATTATTTTTG 57.782 29.630 26.37 21.82 42.26 2.44
736 740 7.962373 GGTCCACTGCAAAATAATTATTTTTGC 59.038 33.333 28.41 28.41 42.26 3.68
737 741 8.502387 GTCCACTGCAAAATAATTATTTTTGCA 58.498 29.630 31.43 31.43 42.26 4.08
738 742 9.060347 TCCACTGCAAAATAATTATTTTTGCAA 57.940 25.926 32.07 24.38 42.26 4.08
739 743 9.116054 CCACTGCAAAATAATTATTTTTGCAAC 57.884 29.630 32.07 21.72 42.26 4.17
740 744 9.661187 CACTGCAAAATAATTATTTTTGCAACA 57.339 25.926 32.07 23.55 42.26 3.33
750 754 7.790823 ATTATTTTTGCAACAAAAGCTCTGT 57.209 28.000 0.00 0.00 0.00 3.41
751 755 7.608308 TTATTTTTGCAACAAAAGCTCTGTT 57.392 28.000 0.00 8.05 37.49 3.16
752 756 8.709386 TTATTTTTGCAACAAAAGCTCTGTTA 57.291 26.923 12.43 0.00 35.26 2.41
753 757 6.401955 TTTTTGCAACAAAAGCTCTGTTAC 57.598 33.333 12.43 8.75 35.26 2.50
754 758 4.710423 TTGCAACAAAAGCTCTGTTACA 57.290 36.364 12.43 10.87 35.26 2.41
755 759 4.291540 TGCAACAAAAGCTCTGTTACAG 57.708 40.909 5.94 5.94 35.26 2.74
756 760 3.694072 TGCAACAAAAGCTCTGTTACAGT 59.306 39.130 12.41 0.00 35.26 3.55
757 761 4.157656 TGCAACAAAAGCTCTGTTACAGTT 59.842 37.500 12.41 0.00 35.26 3.16
758 762 5.102313 GCAACAAAAGCTCTGTTACAGTTT 58.898 37.500 12.41 3.12 35.26 2.66
759 763 5.576774 GCAACAAAAGCTCTGTTACAGTTTT 59.423 36.000 12.41 8.96 35.26 2.43
760 764 6.090763 GCAACAAAAGCTCTGTTACAGTTTTT 59.909 34.615 12.41 13.51 35.26 1.94
761 765 7.666377 CAACAAAAGCTCTGTTACAGTTTTTC 58.334 34.615 12.41 0.00 35.26 2.29
762 766 6.330278 ACAAAAGCTCTGTTACAGTTTTTCC 58.670 36.000 12.41 0.00 32.61 3.13
763 767 4.813296 AAGCTCTGTTACAGTTTTTCCG 57.187 40.909 12.41 0.00 32.61 4.30
764 768 3.139077 AGCTCTGTTACAGTTTTTCCGG 58.861 45.455 12.41 0.00 32.61 5.14
765 769 2.350484 GCTCTGTTACAGTTTTTCCGGC 60.350 50.000 12.41 2.44 32.61 6.13
766 770 2.875933 CTCTGTTACAGTTTTTCCGGCA 59.124 45.455 12.41 0.00 32.61 5.69
767 771 3.280295 TCTGTTACAGTTTTTCCGGCAA 58.720 40.909 12.41 0.00 32.61 4.52
768 772 3.065648 TCTGTTACAGTTTTTCCGGCAAC 59.934 43.478 12.41 0.00 32.61 4.17
769 773 2.753452 TGTTACAGTTTTTCCGGCAACA 59.247 40.909 0.00 0.00 0.00 3.33
770 774 3.181495 TGTTACAGTTTTTCCGGCAACAG 60.181 43.478 0.00 0.00 0.00 3.16
771 775 1.757682 ACAGTTTTTCCGGCAACAGA 58.242 45.000 0.00 0.00 0.00 3.41
772 776 1.676006 ACAGTTTTTCCGGCAACAGAG 59.324 47.619 0.00 0.00 0.00 3.35
773 777 1.001378 CAGTTTTTCCGGCAACAGAGG 60.001 52.381 0.00 0.00 0.00 3.69
774 778 0.318699 GTTTTTCCGGCAACAGAGGC 60.319 55.000 0.00 0.00 0.00 4.70
782 786 3.873805 GCAACAGAGGCCTTGTTTC 57.126 52.632 22.77 17.41 0.00 2.78
783 787 1.032014 GCAACAGAGGCCTTGTTTCA 58.968 50.000 22.77 0.00 0.00 2.69
784 788 1.408702 GCAACAGAGGCCTTGTTTCAA 59.591 47.619 22.77 0.00 0.00 2.69
785 789 2.159114 GCAACAGAGGCCTTGTTTCAAA 60.159 45.455 22.77 0.00 0.00 2.69
786 790 3.678529 GCAACAGAGGCCTTGTTTCAAAA 60.679 43.478 22.77 0.00 0.00 2.44
787 791 4.502962 CAACAGAGGCCTTGTTTCAAAAA 58.497 39.130 22.77 0.00 0.00 1.94
807 811 2.629639 AAAATTGCAACGGATCCGAC 57.370 45.000 39.55 26.37 42.83 4.79
808 812 0.446222 AAATTGCAACGGATCCGACG 59.554 50.000 39.55 28.07 42.83 5.12
809 813 0.390603 AATTGCAACGGATCCGACGA 60.391 50.000 39.55 25.79 42.83 4.20
810 814 0.390603 ATTGCAACGGATCCGACGAA 60.391 50.000 39.55 24.02 42.83 3.85
811 815 0.390603 TTGCAACGGATCCGACGAAT 60.391 50.000 39.55 15.21 42.83 3.34
812 816 0.390603 TGCAACGGATCCGACGAATT 60.391 50.000 39.55 20.50 42.83 2.17
813 817 0.026285 GCAACGGATCCGACGAATTG 59.974 55.000 39.55 30.12 42.83 2.32
814 818 1.635844 CAACGGATCCGACGAATTGA 58.364 50.000 39.55 0.00 42.83 2.57
815 819 1.588404 CAACGGATCCGACGAATTGAG 59.412 52.381 39.55 13.71 42.83 3.02
816 820 0.527817 ACGGATCCGACGAATTGAGC 60.528 55.000 39.55 0.00 42.83 4.26
817 821 1.540607 CGGATCCGACGAATTGAGCG 61.541 60.000 30.62 0.00 42.83 5.03
818 822 0.248907 GGATCCGACGAATTGAGCGA 60.249 55.000 0.00 0.00 0.00 4.93
819 823 0.847035 GATCCGACGAATTGAGCGAC 59.153 55.000 0.00 0.00 0.00 5.19
820 824 0.527817 ATCCGACGAATTGAGCGACC 60.528 55.000 0.00 0.00 0.00 4.79
821 825 2.505498 CCGACGAATTGAGCGACCG 61.505 63.158 0.00 0.00 0.00 4.79
822 826 1.513373 CGACGAATTGAGCGACCGA 60.513 57.895 0.00 0.00 33.23 4.69
823 827 1.464429 CGACGAATTGAGCGACCGAG 61.464 60.000 0.00 0.00 33.23 4.63
824 828 1.743855 GACGAATTGAGCGACCGAGC 61.744 60.000 0.00 0.00 37.41 5.03
825 829 2.849966 CGAATTGAGCGACCGAGCG 61.850 63.158 0.00 0.00 43.00 5.03
826 830 1.805945 GAATTGAGCGACCGAGCGT 60.806 57.895 0.00 0.00 43.00 5.07
827 831 1.743855 GAATTGAGCGACCGAGCGTC 61.744 60.000 0.00 0.00 43.00 5.19
828 832 2.486636 AATTGAGCGACCGAGCGTCA 62.487 55.000 0.00 0.00 42.07 4.35
829 833 3.891586 TTGAGCGACCGAGCGTCAC 62.892 63.158 0.00 0.00 42.07 3.67
833 837 4.052229 CGACCGAGCGTCACCCTT 62.052 66.667 0.00 0.00 42.07 3.95
834 838 2.342648 GACCGAGCGTCACCCTTT 59.657 61.111 0.00 0.00 41.54 3.11
835 839 1.301479 GACCGAGCGTCACCCTTTT 60.301 57.895 0.00 0.00 41.54 2.27
836 840 0.037975 GACCGAGCGTCACCCTTTTA 60.038 55.000 0.00 0.00 41.54 1.52
837 841 0.611714 ACCGAGCGTCACCCTTTTAT 59.388 50.000 0.00 0.00 0.00 1.40
838 842 1.002773 ACCGAGCGTCACCCTTTTATT 59.997 47.619 0.00 0.00 0.00 1.40
839 843 2.234414 ACCGAGCGTCACCCTTTTATTA 59.766 45.455 0.00 0.00 0.00 0.98
840 844 3.118519 ACCGAGCGTCACCCTTTTATTAT 60.119 43.478 0.00 0.00 0.00 1.28
841 845 3.875134 CCGAGCGTCACCCTTTTATTATT 59.125 43.478 0.00 0.00 0.00 1.40
842 846 4.260620 CCGAGCGTCACCCTTTTATTATTG 60.261 45.833 0.00 0.00 0.00 1.90
843 847 4.598062 GAGCGTCACCCTTTTATTATTGC 58.402 43.478 0.00 0.00 0.00 3.56
844 848 4.013728 AGCGTCACCCTTTTATTATTGCA 58.986 39.130 0.00 0.00 0.00 4.08
845 849 4.461081 AGCGTCACCCTTTTATTATTGCAA 59.539 37.500 0.00 0.00 0.00 4.08
846 850 5.127031 AGCGTCACCCTTTTATTATTGCAAT 59.873 36.000 17.56 17.56 0.00 3.56
847 851 6.320164 AGCGTCACCCTTTTATTATTGCAATA 59.680 34.615 15.21 15.21 0.00 1.90
848 852 7.014230 AGCGTCACCCTTTTATTATTGCAATAT 59.986 33.333 19.51 12.02 0.00 1.28
849 853 8.293867 GCGTCACCCTTTTATTATTGCAATATA 58.706 33.333 19.51 11.03 0.00 0.86
850 854 9.825972 CGTCACCCTTTTATTATTGCAATATAG 57.174 33.333 19.51 11.44 0.00 1.31
852 856 9.875708 TCACCCTTTTATTATTGCAATATAGGT 57.124 29.630 19.51 14.26 0.00 3.08
854 858 9.875708 ACCCTTTTATTATTGCAATATAGGTCA 57.124 29.630 19.51 4.42 0.00 4.02
864 868 3.738982 CAATATAGGTCATGTTGCGGGA 58.261 45.455 0.00 0.00 30.22 5.14
865 869 4.133820 CAATATAGGTCATGTTGCGGGAA 58.866 43.478 0.00 0.00 30.22 3.97
866 870 2.799126 ATAGGTCATGTTGCGGGAAA 57.201 45.000 0.00 0.00 0.00 3.13
870 874 2.231235 AGGTCATGTTGCGGGAAATTTC 59.769 45.455 9.83 9.83 0.00 2.17
878 882 1.269517 TGCGGGAAATTTCTGCAACAC 60.270 47.619 25.75 7.68 36.27 3.32
879 883 1.685302 CGGGAAATTTCTGCAACACG 58.315 50.000 17.42 0.35 0.00 4.49
880 884 1.265635 CGGGAAATTTCTGCAACACGA 59.734 47.619 17.42 0.00 0.00 4.35
881 885 2.665519 CGGGAAATTTCTGCAACACGAG 60.666 50.000 17.42 0.00 0.00 4.18
903 907 4.099881 AGTCATGTTGCAGGAATTGTTTGT 59.900 37.500 0.00 0.00 0.00 2.83
935 939 1.529244 GGTGGTTGTGGCTGAGCTT 60.529 57.895 3.72 0.00 0.00 3.74
949 953 2.749441 GCTTGAGGAGGTGGCAGC 60.749 66.667 9.02 9.02 0.00 5.25
957 961 4.415150 AGGTGGCAGCCATGGACG 62.415 66.667 19.75 6.15 35.28 4.79
969 973 3.023949 ATGGACGCCAGTGCTCCTC 62.024 63.158 4.90 0.00 39.62 3.71
1023 1027 0.865111 CGAACATGGCTTCAACGACA 59.135 50.000 0.00 0.00 0.00 4.35
1070 1074 4.367023 GGCGGTGCAGTACGGTGA 62.367 66.667 7.38 0.00 32.62 4.02
1074 1078 1.509463 GGTGCAGTACGGTGATCGA 59.491 57.895 0.00 0.00 42.43 3.59
1081 1085 3.486108 GCAGTACGGTGATCGATTACAAG 59.514 47.826 20.44 15.61 42.43 3.16
1086 1090 3.194968 ACGGTGATCGATTACAAGAACCT 59.805 43.478 20.44 0.00 42.43 3.50
1099 1103 3.509575 ACAAGAACCTTTGAAACAGCACA 59.490 39.130 0.00 0.00 0.00 4.57
1101 1105 3.356290 AGAACCTTTGAAACAGCACACT 58.644 40.909 0.00 0.00 0.00 3.55
1128 1132 0.116940 ACAACCCATGCTCCCCAATT 59.883 50.000 0.00 0.00 0.00 2.32
1137 1141 2.449464 TGCTCCCCAATTGATTCACAG 58.551 47.619 7.12 0.00 0.00 3.66
1140 1144 1.358787 TCCCCAATTGATTCACAGGCT 59.641 47.619 7.12 0.00 0.00 4.58
1146 1150 5.128205 CCAATTGATTCACAGGCTATCAGA 58.872 41.667 7.12 0.00 30.64 3.27
1197 1201 0.990374 AGCAGTCAAGGCTGAGGAAT 59.010 50.000 5.76 0.00 40.80 3.01
1239 1243 5.800438 GCGGTGGAGAAAAATAAAGATGAAC 59.200 40.000 0.00 0.00 0.00 3.18
1269 1273 6.161855 AGACGTAGCAATGAATGGATAAGA 57.838 37.500 0.00 0.00 0.00 2.10
1292 1302 2.825532 GGCAGAAAGGATAAGGTTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
1310 1320 3.566853 CTAGCATGGCACGTGGCG 61.567 66.667 33.18 22.49 46.16 5.69
1311 1321 4.075854 TAGCATGGCACGTGGCGA 62.076 61.111 33.18 23.44 46.16 5.54
1332 1342 1.376683 GTACAAGGCGGTGGATGCA 60.377 57.895 0.00 0.00 0.00 3.96
1337 1347 1.315257 AAGGCGGTGGATGCATTGTC 61.315 55.000 0.00 0.00 34.70 3.18
1363 1373 2.282180 GCCGGTGGAAGGAAAGCA 60.282 61.111 1.90 0.00 0.00 3.91
1426 1436 4.638421 TCCCAGATAGCGGTATTTTGTTTG 59.362 41.667 8.79 1.88 0.00 2.93
1428 1438 4.202010 CCAGATAGCGGTATTTTGTTTGGG 60.202 45.833 8.79 0.00 0.00 4.12
1446 1456 2.906897 AAGTGCCACCCTGTTGCG 60.907 61.111 0.00 0.00 0.00 4.85
1451 1461 2.203139 CCACCCTGTTGCGTGTCA 60.203 61.111 0.00 0.00 0.00 3.58
1454 1464 2.978010 CCCTGTTGCGTGTCACCC 60.978 66.667 0.00 0.00 0.00 4.61
1456 1466 2.203139 CTGTTGCGTGTCACCCCA 60.203 61.111 0.00 0.00 0.00 4.96
1457 1467 1.600636 CTGTTGCGTGTCACCCCAT 60.601 57.895 0.00 0.00 0.00 4.00
1458 1468 1.855213 CTGTTGCGTGTCACCCCATG 61.855 60.000 0.00 0.00 0.00 3.66
1520 2268 6.961359 AAAAAGAAAAACTGTAGGCAACAC 57.039 33.333 0.00 0.00 41.41 3.32
1521 2269 4.649088 AAGAAAAACTGTAGGCAACACC 57.351 40.909 0.00 0.00 41.41 4.16
1522 2270 2.956333 AGAAAAACTGTAGGCAACACCC 59.044 45.455 0.00 0.00 40.58 4.61
1523 2271 1.314730 AAAACTGTAGGCAACACCCG 58.685 50.000 0.00 0.00 40.58 5.28
1524 2272 1.170290 AAACTGTAGGCAACACCCGC 61.170 55.000 0.00 0.00 40.58 6.13
1525 2273 2.031919 CTGTAGGCAACACCCGCA 59.968 61.111 0.00 0.00 40.58 5.69
1526 2274 2.281208 TGTAGGCAACACCCGCAC 60.281 61.111 0.00 0.00 40.58 5.34
1527 2275 2.281208 GTAGGCAACACCCGCACA 60.281 61.111 0.00 0.00 40.58 4.57
1528 2276 2.031919 TAGGCAACACCCGCACAG 59.968 61.111 0.00 0.00 40.58 3.66
1529 2277 3.545124 TAGGCAACACCCGCACAGG 62.545 63.158 0.00 0.00 40.58 4.00
1531 2279 2.281208 GCAACACCCGCACAGGTA 60.281 61.111 0.00 0.00 38.39 3.08
1532 2280 2.325082 GCAACACCCGCACAGGTAG 61.325 63.158 0.00 0.00 38.39 3.18
1533 2281 1.070786 CAACACCCGCACAGGTAGT 59.929 57.895 0.00 0.00 38.39 2.73
1541 2289 4.904466 CACAGGTAGTGTACGGGC 57.096 61.111 0.00 0.00 43.40 6.13
1542 2290 2.273908 CACAGGTAGTGTACGGGCT 58.726 57.895 0.00 0.00 43.40 5.19
1543 2291 0.108804 CACAGGTAGTGTACGGGCTG 60.109 60.000 0.00 0.00 43.40 4.85
1544 2292 0.541296 ACAGGTAGTGTACGGGCTGT 60.541 55.000 3.57 3.57 37.75 4.40
1545 2293 0.108804 CAGGTAGTGTACGGGCTGTG 60.109 60.000 9.79 0.00 0.00 3.66
1546 2294 1.217244 GGTAGTGTACGGGCTGTGG 59.783 63.158 9.79 0.00 0.00 4.17
1547 2295 1.217244 GTAGTGTACGGGCTGTGGG 59.783 63.158 9.79 0.00 0.00 4.61
1548 2296 1.985662 TAGTGTACGGGCTGTGGGG 60.986 63.158 9.79 0.00 0.00 4.96
1549 2297 4.404098 GTGTACGGGCTGTGGGGG 62.404 72.222 9.79 0.00 0.00 5.40
1550 2298 4.966274 TGTACGGGCTGTGGGGGT 62.966 66.667 9.79 0.00 0.00 4.95
1551 2299 4.404098 GTACGGGCTGTGGGGGTG 62.404 72.222 9.79 0.00 0.00 4.61
1596 2344 6.007703 CCCGGTATATGGGTTTGTTATTGAT 58.992 40.000 0.00 0.00 42.07 2.57
1803 2552 0.866061 CGCGTGACCATCTCCTTACG 60.866 60.000 0.00 0.00 34.93 3.18
1804 2553 0.172803 GCGTGACCATCTCCTTACGT 59.827 55.000 0.00 0.00 34.37 3.57
1805 2554 1.909376 CGTGACCATCTCCTTACGTG 58.091 55.000 0.00 0.00 0.00 4.49
1806 2555 1.201647 CGTGACCATCTCCTTACGTGT 59.798 52.381 0.00 0.00 0.00 4.49
1807 2556 2.421073 CGTGACCATCTCCTTACGTGTA 59.579 50.000 0.00 0.00 0.00 2.90
1808 2557 3.487042 CGTGACCATCTCCTTACGTGTAG 60.487 52.174 0.00 0.00 0.00 2.74
1809 2558 2.426024 TGACCATCTCCTTACGTGTAGC 59.574 50.000 0.00 0.00 0.00 3.58
1811 2560 1.269102 CCATCTCCTTACGTGTAGCGG 60.269 57.143 0.00 0.00 46.52 5.52
1812 2561 1.674441 CATCTCCTTACGTGTAGCGGA 59.326 52.381 0.00 0.00 46.52 5.54
1813 2562 1.825090 TCTCCTTACGTGTAGCGGAA 58.175 50.000 0.00 0.00 46.52 4.30
1814 2563 2.161855 TCTCCTTACGTGTAGCGGAAA 58.838 47.619 0.00 0.00 43.66 3.13
1815 2564 2.756760 TCTCCTTACGTGTAGCGGAAAT 59.243 45.455 0.00 0.00 43.66 2.17
1816 2565 3.114065 CTCCTTACGTGTAGCGGAAATC 58.886 50.000 0.00 0.00 43.66 2.17
1817 2566 2.756760 TCCTTACGTGTAGCGGAAATCT 59.243 45.455 0.00 0.00 43.66 2.40
1818 2567 2.858344 CCTTACGTGTAGCGGAAATCTG 59.142 50.000 0.00 0.00 43.66 2.90
1819 2568 3.508762 CTTACGTGTAGCGGAAATCTGT 58.491 45.455 0.00 0.00 43.66 3.41
1820 2569 2.450609 ACGTGTAGCGGAAATCTGTT 57.549 45.000 0.00 0.00 46.52 3.16
1821 2570 2.762745 ACGTGTAGCGGAAATCTGTTT 58.237 42.857 0.00 0.00 46.52 2.83
1822 2571 2.735134 ACGTGTAGCGGAAATCTGTTTC 59.265 45.455 0.00 0.00 46.52 2.78
1835 2584 7.269435 GAAATCTGTTTCCGAAAATGATGTG 57.731 36.000 9.34 0.00 38.20 3.21
1836 2585 5.964958 ATCTGTTTCCGAAAATGATGTGT 57.035 34.783 0.00 0.00 0.00 3.72
1837 2586 5.766150 TCTGTTTCCGAAAATGATGTGTT 57.234 34.783 0.00 0.00 0.00 3.32
1838 2587 5.518812 TCTGTTTCCGAAAATGATGTGTTG 58.481 37.500 0.00 0.00 0.00 3.33
1839 2588 5.067153 TCTGTTTCCGAAAATGATGTGTTGT 59.933 36.000 0.00 0.00 0.00 3.32
1840 2589 5.655488 TGTTTCCGAAAATGATGTGTTGTT 58.345 33.333 0.00 0.00 0.00 2.83
1841 2590 5.518128 TGTTTCCGAAAATGATGTGTTGTTG 59.482 36.000 0.00 0.00 0.00 3.33
1842 2591 3.637432 TCCGAAAATGATGTGTTGTTGC 58.363 40.909 0.00 0.00 0.00 4.17
1843 2592 3.067320 TCCGAAAATGATGTGTTGTTGCA 59.933 39.130 0.00 0.00 0.00 4.08
1844 2593 3.426191 CCGAAAATGATGTGTTGTTGCAG 59.574 43.478 0.00 0.00 0.00 4.41
1845 2594 3.426191 CGAAAATGATGTGTTGTTGCAGG 59.574 43.478 0.00 0.00 0.00 4.85
1846 2595 4.619973 GAAAATGATGTGTTGTTGCAGGA 58.380 39.130 0.00 0.00 0.00 3.86
1847 2596 3.648339 AATGATGTGTTGTTGCAGGAC 57.352 42.857 0.00 0.00 0.00 3.85
1848 2597 2.049888 TGATGTGTTGTTGCAGGACA 57.950 45.000 0.00 0.00 0.00 4.02
1849 2598 2.373224 TGATGTGTTGTTGCAGGACAA 58.627 42.857 0.00 0.00 37.20 3.18
1850 2599 2.957680 TGATGTGTTGTTGCAGGACAAT 59.042 40.909 7.20 0.00 41.18 2.71
1851 2600 3.004629 TGATGTGTTGTTGCAGGACAATC 59.995 43.478 7.20 2.27 41.18 2.67
1852 2601 2.373224 TGTGTTGTTGCAGGACAATCA 58.627 42.857 7.20 7.39 41.18 2.57
1853 2602 2.358582 TGTGTTGTTGCAGGACAATCAG 59.641 45.455 7.20 0.00 41.18 2.90
1854 2603 2.358898 GTGTTGTTGCAGGACAATCAGT 59.641 45.455 7.20 0.00 41.18 3.41
1855 2604 3.023119 TGTTGTTGCAGGACAATCAGTT 58.977 40.909 7.20 0.00 41.18 3.16
1856 2605 3.446873 TGTTGTTGCAGGACAATCAGTTT 59.553 39.130 7.20 0.00 41.18 2.66
1857 2606 3.988379 TGTTGCAGGACAATCAGTTTC 57.012 42.857 0.00 0.00 41.27 2.78
1858 2607 2.290367 TGTTGCAGGACAATCAGTTTCG 59.710 45.455 0.00 0.00 41.27 3.46
1859 2608 1.522668 TGCAGGACAATCAGTTTCGG 58.477 50.000 0.00 0.00 0.00 4.30
1860 2609 1.071542 TGCAGGACAATCAGTTTCGGA 59.928 47.619 0.00 0.00 0.00 4.55
1861 2610 2.151202 GCAGGACAATCAGTTTCGGAA 58.849 47.619 0.00 0.00 0.00 4.30
1862 2611 2.552315 GCAGGACAATCAGTTTCGGAAA 59.448 45.455 0.00 0.00 0.00 3.13
1863 2612 3.609409 GCAGGACAATCAGTTTCGGAAAC 60.609 47.826 22.74 22.74 41.69 2.78
1910 2659 3.181488 CCTGCAACAACACATCAGTTTCA 60.181 43.478 0.00 0.00 0.00 2.69
1968 2760 1.579429 GCGCAAAATCCACCGTCTT 59.421 52.632 0.30 0.00 0.00 3.01
1980 2772 1.296392 CCGTCTTGTGAGCCATCCA 59.704 57.895 0.00 0.00 0.00 3.41
2033 2830 5.183904 AGACTCTTGTTGCAAAATATCCACC 59.816 40.000 0.00 0.00 0.00 4.61
2035 2832 5.539955 ACTCTTGTTGCAAAATATCCACCTT 59.460 36.000 0.00 0.00 0.00 3.50
2088 2889 7.576236 TGCAAAAACTTCTCTCTCTAATTTCG 58.424 34.615 0.00 0.00 0.00 3.46
2093 2894 8.973835 AAACTTCTCTCTCTAATTTCGTACAG 57.026 34.615 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.566231 GACCCCATCCACATCTCCTTT 59.434 52.381 0.00 0.00 0.00 3.11
123 124 1.051008 ATGTGAGTCTGCACCACTCA 58.949 50.000 16.56 16.56 46.49 3.41
125 126 0.035881 CCATGTGAGTCTGCACCACT 59.964 55.000 0.00 0.00 37.99 4.00
312 313 0.600782 GCGTGTTTTGAGGGTCCGTA 60.601 55.000 0.00 0.00 0.00 4.02
322 323 0.040514 TTCTGGATGCGCGTGTTTTG 60.041 50.000 6.97 0.00 0.00 2.44
330 331 1.457303 GATATGTCGTTCTGGATGCGC 59.543 52.381 0.00 0.00 0.00 6.09
338 339 6.092670 CAGAATGTGTTTGGATATGTCGTTCT 59.907 38.462 0.00 0.00 32.34 3.01
341 342 5.801350 CAGAATGTGTTTGGATATGTCGT 57.199 39.130 0.00 0.00 0.00 4.34
362 363 2.184533 AGGATACCACGTTGGATGACA 58.815 47.619 10.46 0.00 40.96 3.58
374 375 2.313643 TCTGTGGACCTGTAGGATACCA 59.686 50.000 4.64 8.26 42.12 3.25
479 483 9.264719 AGAAAAAGCAGAAAATTAGAAATGGTG 57.735 29.630 0.00 0.00 0.00 4.17
521 525 4.514577 AAGATCCGCCAGCCGACG 62.515 66.667 0.00 0.00 40.02 5.12
522 526 1.305930 AAAAAGATCCGCCAGCCGAC 61.306 55.000 0.00 0.00 40.02 4.79
523 527 0.250793 TAAAAAGATCCGCCAGCCGA 59.749 50.000 0.00 0.00 40.02 5.54
524 528 1.091537 TTAAAAAGATCCGCCAGCCG 58.908 50.000 0.00 0.00 0.00 5.52
525 529 3.192633 TCTTTTAAAAAGATCCGCCAGCC 59.807 43.478 1.66 0.00 0.00 4.85
526 530 4.434713 TCTTTTAAAAAGATCCGCCAGC 57.565 40.909 1.66 0.00 0.00 4.85
534 538 3.181490 GGCGGCGGATCTTTTAAAAAGAT 60.181 43.478 9.78 0.00 39.53 2.40
535 539 2.162809 GGCGGCGGATCTTTTAAAAAGA 59.837 45.455 9.78 0.00 0.00 2.52
536 540 2.163613 AGGCGGCGGATCTTTTAAAAAG 59.836 45.455 9.78 0.00 0.00 2.27
537 541 2.162809 GAGGCGGCGGATCTTTTAAAAA 59.837 45.455 9.78 0.00 0.00 1.94
538 542 1.741145 GAGGCGGCGGATCTTTTAAAA 59.259 47.619 9.78 0.00 0.00 1.52
539 543 1.339247 TGAGGCGGCGGATCTTTTAAA 60.339 47.619 9.78 0.00 0.00 1.52
540 544 0.250793 TGAGGCGGCGGATCTTTTAA 59.749 50.000 9.78 0.00 0.00 1.52
541 545 0.461339 GTGAGGCGGCGGATCTTTTA 60.461 55.000 9.78 0.00 0.00 1.52
542 546 1.745489 GTGAGGCGGCGGATCTTTT 60.745 57.895 9.78 0.00 0.00 2.27
543 547 2.125106 GTGAGGCGGCGGATCTTT 60.125 61.111 9.78 0.00 0.00 2.52
544 548 4.514577 CGTGAGGCGGCGGATCTT 62.515 66.667 9.78 0.00 36.85 2.40
546 550 4.933064 CTCGTGAGGCGGCGGATC 62.933 72.222 9.78 0.00 41.72 3.36
551 555 4.129737 TACAGCTCGTGAGGCGGC 62.130 66.667 0.00 0.00 41.72 6.53
552 556 2.103143 CTACAGCTCGTGAGGCGG 59.897 66.667 0.00 0.00 41.72 6.13
553 557 1.729470 ATCCTACAGCTCGTGAGGCG 61.729 60.000 0.00 0.00 43.01 5.52
554 558 0.461961 AATCCTACAGCTCGTGAGGC 59.538 55.000 0.00 0.00 0.00 4.70
555 559 2.294791 CCTAATCCTACAGCTCGTGAGG 59.705 54.545 0.00 0.00 0.00 3.86
556 560 2.287909 GCCTAATCCTACAGCTCGTGAG 60.288 54.545 0.00 0.00 0.00 3.51
557 561 1.681793 GCCTAATCCTACAGCTCGTGA 59.318 52.381 0.00 0.00 0.00 4.35
558 562 1.409064 TGCCTAATCCTACAGCTCGTG 59.591 52.381 0.00 0.00 0.00 4.35
559 563 1.683917 CTGCCTAATCCTACAGCTCGT 59.316 52.381 0.00 0.00 0.00 4.18
560 564 1.957177 TCTGCCTAATCCTACAGCTCG 59.043 52.381 0.00 0.00 0.00 5.03
561 565 4.615588 AATCTGCCTAATCCTACAGCTC 57.384 45.455 0.00 0.00 0.00 4.09
562 566 6.694445 ATAAATCTGCCTAATCCTACAGCT 57.306 37.500 0.00 0.00 0.00 4.24
563 567 6.936900 TCAATAAATCTGCCTAATCCTACAGC 59.063 38.462 0.00 0.00 0.00 4.40
564 568 8.153550 AGTCAATAAATCTGCCTAATCCTACAG 58.846 37.037 0.00 0.00 0.00 2.74
565 569 8.034313 AGTCAATAAATCTGCCTAATCCTACA 57.966 34.615 0.00 0.00 0.00 2.74
566 570 9.998106 TTAGTCAATAAATCTGCCTAATCCTAC 57.002 33.333 0.00 0.00 0.00 3.18
568 572 7.663493 GCTTAGTCAATAAATCTGCCTAATCCT 59.337 37.037 0.00 0.00 0.00 3.24
569 573 7.360438 CGCTTAGTCAATAAATCTGCCTAATCC 60.360 40.741 0.00 0.00 0.00 3.01
570 574 7.171678 ACGCTTAGTCAATAAATCTGCCTAATC 59.828 37.037 0.00 0.00 0.00 1.75
571 575 6.992715 ACGCTTAGTCAATAAATCTGCCTAAT 59.007 34.615 0.00 0.00 0.00 1.73
572 576 6.346096 ACGCTTAGTCAATAAATCTGCCTAA 58.654 36.000 0.00 0.00 0.00 2.69
573 577 5.914033 ACGCTTAGTCAATAAATCTGCCTA 58.086 37.500 0.00 0.00 0.00 3.93
574 578 4.770795 ACGCTTAGTCAATAAATCTGCCT 58.229 39.130 0.00 0.00 0.00 4.75
587 591 6.839796 GCAATAATAAAGAACGACGCTTAGTC 59.160 38.462 0.00 0.00 46.16 2.59
588 592 6.311935 TGCAATAATAAAGAACGACGCTTAGT 59.688 34.615 0.00 0.00 0.00 2.24
589 593 6.701937 TGCAATAATAAAGAACGACGCTTAG 58.298 36.000 0.00 0.00 0.00 2.18
590 594 6.650239 TGCAATAATAAAGAACGACGCTTA 57.350 33.333 0.00 0.00 0.00 3.09
591 595 5.539582 TGCAATAATAAAGAACGACGCTT 57.460 34.783 0.00 0.00 0.00 4.68
592 596 5.106869 TGTTGCAATAATAAAGAACGACGCT 60.107 36.000 0.59 0.00 0.00 5.07
593 597 5.002189 GTGTTGCAATAATAAAGAACGACGC 59.998 40.000 0.59 0.00 0.00 5.19
594 598 6.074642 TGTGTTGCAATAATAAAGAACGACG 58.925 36.000 0.59 0.00 0.00 5.12
595 599 6.523201 CCTGTGTTGCAATAATAAAGAACGAC 59.477 38.462 0.59 0.00 0.00 4.34
596 600 6.205853 ACCTGTGTTGCAATAATAAAGAACGA 59.794 34.615 0.59 0.00 0.00 3.85
597 601 6.378582 ACCTGTGTTGCAATAATAAAGAACG 58.621 36.000 0.59 0.00 0.00 3.95
598 602 8.006741 CAACCTGTGTTGCAATAATAAAGAAC 57.993 34.615 0.59 0.00 44.86 3.01
616 620 1.178276 TTTTCCGCAACACAACCTGT 58.822 45.000 0.00 0.00 32.89 4.00
617 621 2.034558 AGATTTTCCGCAACACAACCTG 59.965 45.455 0.00 0.00 0.00 4.00
618 622 2.293399 GAGATTTTCCGCAACACAACCT 59.707 45.455 0.00 0.00 0.00 3.50
619 623 2.293399 AGAGATTTTCCGCAACACAACC 59.707 45.455 0.00 0.00 0.00 3.77
620 624 3.300009 CAGAGATTTTCCGCAACACAAC 58.700 45.455 0.00 0.00 0.00 3.32
621 625 2.287547 GCAGAGATTTTCCGCAACACAA 60.288 45.455 0.00 0.00 0.00 3.33
622 626 1.266718 GCAGAGATTTTCCGCAACACA 59.733 47.619 0.00 0.00 0.00 3.72
623 627 1.266718 TGCAGAGATTTTCCGCAACAC 59.733 47.619 0.00 0.00 36.31 3.32
624 628 1.603456 TGCAGAGATTTTCCGCAACA 58.397 45.000 0.00 0.00 36.31 3.33
625 629 2.704725 TTGCAGAGATTTTCCGCAAC 57.295 45.000 0.00 0.00 42.69 4.17
626 630 1.952990 TGTTGCAGAGATTTTCCGCAA 59.047 42.857 0.00 0.00 44.72 4.85
627 631 1.603456 TGTTGCAGAGATTTTCCGCA 58.397 45.000 0.00 0.00 37.44 5.69
628 632 2.523015 CATGTTGCAGAGATTTTCCGC 58.477 47.619 0.00 0.00 0.00 5.54
629 633 2.523015 GCATGTTGCAGAGATTTTCCG 58.477 47.619 0.00 0.00 44.26 4.30
630 634 2.095059 ACGCATGTTGCAGAGATTTTCC 60.095 45.455 0.00 0.00 45.36 3.13
631 635 3.166657 GACGCATGTTGCAGAGATTTTC 58.833 45.455 0.00 0.00 45.36 2.29
632 636 2.553602 TGACGCATGTTGCAGAGATTTT 59.446 40.909 0.00 0.00 45.36 1.82
633 637 2.153645 TGACGCATGTTGCAGAGATTT 58.846 42.857 0.00 0.00 45.36 2.17
634 638 1.812235 TGACGCATGTTGCAGAGATT 58.188 45.000 0.00 0.00 45.36 2.40
635 639 1.669265 CATGACGCATGTTGCAGAGAT 59.331 47.619 10.49 0.00 45.36 2.75
636 640 1.081094 CATGACGCATGTTGCAGAGA 58.919 50.000 10.49 0.00 45.36 3.10
637 641 3.598678 CATGACGCATGTTGCAGAG 57.401 52.632 10.49 0.00 45.36 3.35
645 649 6.932901 AAAATTTCTGTAACATGACGCATG 57.067 33.333 15.34 15.34 46.18 4.06
646 650 6.128849 GCAAAAATTTCTGTAACATGACGCAT 60.129 34.615 0.00 0.00 0.00 4.73
647 651 5.174761 GCAAAAATTTCTGTAACATGACGCA 59.825 36.000 0.00 0.00 0.00 5.24
648 652 5.174761 TGCAAAAATTTCTGTAACATGACGC 59.825 36.000 0.00 0.00 0.00 5.19
649 653 6.746104 TGCAAAAATTTCTGTAACATGACG 57.254 33.333 0.00 0.00 0.00 4.35
697 701 2.426738 CAGTGGACCTCTGTTGCAAAAA 59.573 45.455 14.31 0.00 0.00 1.94
698 702 2.023673 CAGTGGACCTCTGTTGCAAAA 58.976 47.619 14.31 0.00 0.00 2.44
699 703 1.679139 CAGTGGACCTCTGTTGCAAA 58.321 50.000 14.31 0.00 0.00 3.68
700 704 0.819259 GCAGTGGACCTCTGTTGCAA 60.819 55.000 21.55 0.00 35.60 4.08
701 705 1.227943 GCAGTGGACCTCTGTTGCA 60.228 57.895 21.55 0.00 35.60 4.08
702 706 0.819259 TTGCAGTGGACCTCTGTTGC 60.819 55.000 21.55 11.28 35.60 4.17
703 707 1.679139 TTTGCAGTGGACCTCTGTTG 58.321 50.000 21.55 1.79 35.60 3.33
704 708 2.435372 TTTTGCAGTGGACCTCTGTT 57.565 45.000 21.55 0.00 35.60 3.16
705 709 2.664402 ATTTTGCAGTGGACCTCTGT 57.336 45.000 21.55 2.20 35.60 3.41
706 710 5.649782 AATTATTTTGCAGTGGACCTCTG 57.350 39.130 17.57 17.57 36.18 3.35
707 711 7.961326 AATAATTATTTTGCAGTGGACCTCT 57.039 32.000 4.81 0.00 0.00 3.69
708 712 9.435688 AAAAATAATTATTTTGCAGTGGACCTC 57.564 29.630 28.32 0.00 43.06 3.85
709 713 9.218440 CAAAAATAATTATTTTGCAGTGGACCT 57.782 29.630 28.32 12.09 43.06 3.85
724 728 9.323985 ACAGAGCTTTTGTTGCAAAAATAATTA 57.676 25.926 2.11 0.00 0.00 1.40
725 729 8.212317 ACAGAGCTTTTGTTGCAAAAATAATT 57.788 26.923 2.11 0.00 0.00 1.40
726 730 7.790823 ACAGAGCTTTTGTTGCAAAAATAAT 57.209 28.000 2.11 0.00 0.00 1.28
727 731 7.608308 AACAGAGCTTTTGTTGCAAAAATAA 57.392 28.000 14.51 0.48 37.38 1.40
728 732 7.761704 TGTAACAGAGCTTTTGTTGCAAAAATA 59.238 29.630 23.48 0.00 44.38 1.40
729 733 6.593382 TGTAACAGAGCTTTTGTTGCAAAAAT 59.407 30.769 23.48 0.00 44.38 1.82
730 734 5.928839 TGTAACAGAGCTTTTGTTGCAAAAA 59.071 32.000 23.48 0.00 44.38 1.94
731 735 5.473931 TGTAACAGAGCTTTTGTTGCAAAA 58.526 33.333 23.48 0.00 44.38 2.44
732 736 5.065704 TGTAACAGAGCTTTTGTTGCAAA 57.934 34.783 23.48 9.69 44.38 3.68
733 737 4.157656 ACTGTAACAGAGCTTTTGTTGCAA 59.842 37.500 24.70 14.96 45.79 4.08
734 738 3.694072 ACTGTAACAGAGCTTTTGTTGCA 59.306 39.130 23.83 23.83 44.88 4.08
735 739 4.292977 ACTGTAACAGAGCTTTTGTTGC 57.707 40.909 21.19 20.17 39.03 4.17
736 740 7.201435 GGAAAAACTGTAACAGAGCTTTTGTTG 60.201 37.037 21.19 11.33 39.03 3.33
737 741 6.811665 GGAAAAACTGTAACAGAGCTTTTGTT 59.188 34.615 17.97 17.97 41.36 2.83
738 742 6.330278 GGAAAAACTGTAACAGAGCTTTTGT 58.670 36.000 2.65 0.00 35.18 2.83
739 743 5.455525 CGGAAAAACTGTAACAGAGCTTTTG 59.544 40.000 2.65 0.00 35.18 2.44
740 744 5.449999 CCGGAAAAACTGTAACAGAGCTTTT 60.450 40.000 0.00 0.21 35.18 2.27
741 745 4.036380 CCGGAAAAACTGTAACAGAGCTTT 59.964 41.667 0.00 0.00 35.18 3.51
742 746 3.564225 CCGGAAAAACTGTAACAGAGCTT 59.436 43.478 0.00 0.00 35.18 3.74
743 747 3.139077 CCGGAAAAACTGTAACAGAGCT 58.861 45.455 0.00 0.00 35.18 4.09
744 748 2.350484 GCCGGAAAAACTGTAACAGAGC 60.350 50.000 5.05 0.00 35.18 4.09
745 749 2.875933 TGCCGGAAAAACTGTAACAGAG 59.124 45.455 5.05 0.00 35.18 3.35
746 750 2.920524 TGCCGGAAAAACTGTAACAGA 58.079 42.857 5.05 0.00 35.18 3.41
747 751 3.181495 TGTTGCCGGAAAAACTGTAACAG 60.181 43.478 5.05 0.00 37.52 3.16
748 752 2.753452 TGTTGCCGGAAAAACTGTAACA 59.247 40.909 5.05 0.00 32.05 2.41
749 753 3.065648 TCTGTTGCCGGAAAAACTGTAAC 59.934 43.478 5.05 0.00 0.00 2.50
750 754 3.280295 TCTGTTGCCGGAAAAACTGTAA 58.720 40.909 5.05 0.00 0.00 2.41
751 755 2.875933 CTCTGTTGCCGGAAAAACTGTA 59.124 45.455 5.05 0.86 0.00 2.74
752 756 1.676006 CTCTGTTGCCGGAAAAACTGT 59.324 47.619 5.05 0.00 0.00 3.55
753 757 1.001378 CCTCTGTTGCCGGAAAAACTG 60.001 52.381 5.05 10.43 0.00 3.16
754 758 1.318576 CCTCTGTTGCCGGAAAAACT 58.681 50.000 5.05 0.00 0.00 2.66
755 759 0.318699 GCCTCTGTTGCCGGAAAAAC 60.319 55.000 5.05 6.92 0.00 2.43
756 760 1.460273 GGCCTCTGTTGCCGGAAAAA 61.460 55.000 5.05 0.00 39.48 1.94
757 761 1.901464 GGCCTCTGTTGCCGGAAAA 60.901 57.895 5.05 0.00 39.48 2.29
758 762 2.282180 GGCCTCTGTTGCCGGAAA 60.282 61.111 5.05 0.00 39.48 3.13
764 768 1.032014 TGAAACAAGGCCTCTGTTGC 58.968 50.000 24.65 23.49 0.00 4.17
765 769 3.799281 TTTGAAACAAGGCCTCTGTTG 57.201 42.857 24.65 15.26 0.00 3.33
766 770 4.817318 TTTTTGAAACAAGGCCTCTGTT 57.183 36.364 20.79 20.79 0.00 3.16
787 791 2.667171 CGTCGGATCCGTTGCAATTTTT 60.667 45.455 32.15 0.00 40.74 1.94
788 792 1.135803 CGTCGGATCCGTTGCAATTTT 60.136 47.619 32.15 0.00 40.74 1.82
789 793 0.446222 CGTCGGATCCGTTGCAATTT 59.554 50.000 32.15 0.00 40.74 1.82
790 794 0.390603 TCGTCGGATCCGTTGCAATT 60.391 50.000 32.15 0.00 40.74 2.32
791 795 0.390603 TTCGTCGGATCCGTTGCAAT 60.391 50.000 32.15 0.00 40.74 3.56
792 796 0.390603 ATTCGTCGGATCCGTTGCAA 60.391 50.000 32.15 20.29 40.74 4.08
793 797 0.390603 AATTCGTCGGATCCGTTGCA 60.391 50.000 32.15 17.21 40.74 4.08
794 798 0.026285 CAATTCGTCGGATCCGTTGC 59.974 55.000 32.15 21.47 40.74 4.17
795 799 1.588404 CTCAATTCGTCGGATCCGTTG 59.412 52.381 32.15 26.45 40.74 4.10
796 800 1.922570 CTCAATTCGTCGGATCCGTT 58.077 50.000 32.15 16.97 40.74 4.44
797 801 0.527817 GCTCAATTCGTCGGATCCGT 60.528 55.000 32.15 11.40 40.74 4.69
798 802 1.540607 CGCTCAATTCGTCGGATCCG 61.541 60.000 28.62 28.62 41.35 4.18
799 803 0.248907 TCGCTCAATTCGTCGGATCC 60.249 55.000 0.00 0.00 0.00 3.36
800 804 0.847035 GTCGCTCAATTCGTCGGATC 59.153 55.000 0.00 0.00 0.00 3.36
801 805 0.527817 GGTCGCTCAATTCGTCGGAT 60.528 55.000 0.00 0.00 0.00 4.18
802 806 1.153901 GGTCGCTCAATTCGTCGGA 60.154 57.895 0.00 0.00 0.00 4.55
803 807 2.505498 CGGTCGCTCAATTCGTCGG 61.505 63.158 0.00 0.00 0.00 4.79
804 808 1.464429 CTCGGTCGCTCAATTCGTCG 61.464 60.000 0.00 0.00 0.00 5.12
805 809 1.743855 GCTCGGTCGCTCAATTCGTC 61.744 60.000 0.00 0.00 0.00 4.20
806 810 1.805945 GCTCGGTCGCTCAATTCGT 60.806 57.895 0.00 0.00 0.00 3.85
807 811 2.849966 CGCTCGGTCGCTCAATTCG 61.850 63.158 0.00 0.00 0.00 3.34
808 812 1.743855 GACGCTCGGTCGCTCAATTC 61.744 60.000 0.00 0.00 35.61 2.17
809 813 1.805945 GACGCTCGGTCGCTCAATT 60.806 57.895 0.00 0.00 35.61 2.32
810 814 2.202623 GACGCTCGGTCGCTCAAT 60.203 61.111 0.00 0.00 35.61 2.57
817 821 0.037975 TAAAAGGGTGACGCTCGGTC 60.038 55.000 1.62 0.00 46.27 4.79
818 822 0.611714 ATAAAAGGGTGACGCTCGGT 59.388 50.000 1.62 0.00 0.00 4.69
819 823 1.734163 AATAAAAGGGTGACGCTCGG 58.266 50.000 1.62 0.00 0.00 4.63
820 824 4.785341 GCAATAATAAAAGGGTGACGCTCG 60.785 45.833 1.62 0.00 0.00 5.03
821 825 4.095782 TGCAATAATAAAAGGGTGACGCTC 59.904 41.667 1.62 0.00 0.00 5.03
822 826 4.013728 TGCAATAATAAAAGGGTGACGCT 58.986 39.130 0.00 0.00 0.00 5.07
823 827 4.364415 TGCAATAATAAAAGGGTGACGC 57.636 40.909 0.00 0.00 0.00 5.19
824 828 9.825972 CTATATTGCAATAATAAAAGGGTGACG 57.174 33.333 22.37 0.00 0.00 4.35
826 830 9.875708 ACCTATATTGCAATAATAAAAGGGTGA 57.124 29.630 22.37 0.00 0.00 4.02
828 832 9.875708 TGACCTATATTGCAATAATAAAAGGGT 57.124 29.630 22.37 19.01 0.00 4.34
835 839 8.450180 CGCAACATGACCTATATTGCAATAATA 58.550 33.333 22.37 13.65 44.65 0.98
836 840 7.307694 CGCAACATGACCTATATTGCAATAAT 58.692 34.615 22.37 13.28 44.65 1.28
837 841 6.293900 CCGCAACATGACCTATATTGCAATAA 60.294 38.462 22.37 11.17 44.65 1.40
838 842 5.181056 CCGCAACATGACCTATATTGCAATA 59.819 40.000 20.95 20.95 44.65 1.90
839 843 4.022935 CCGCAACATGACCTATATTGCAAT 60.023 41.667 17.56 17.56 44.65 3.56
840 844 3.314913 CCGCAACATGACCTATATTGCAA 59.685 43.478 0.00 0.00 44.65 4.08
841 845 2.877786 CCGCAACATGACCTATATTGCA 59.122 45.455 13.35 0.00 44.65 4.08
842 846 2.226437 CCCGCAACATGACCTATATTGC 59.774 50.000 0.00 1.97 41.74 3.56
843 847 3.738982 TCCCGCAACATGACCTATATTG 58.261 45.455 0.00 0.00 0.00 1.90
844 848 4.431416 TTCCCGCAACATGACCTATATT 57.569 40.909 0.00 0.00 0.00 1.28
845 849 4.431416 TTTCCCGCAACATGACCTATAT 57.569 40.909 0.00 0.00 0.00 0.86
846 850 3.916359 TTTCCCGCAACATGACCTATA 57.084 42.857 0.00 0.00 0.00 1.31
847 851 2.799126 TTTCCCGCAACATGACCTAT 57.201 45.000 0.00 0.00 0.00 2.57
848 852 2.799126 ATTTCCCGCAACATGACCTA 57.201 45.000 0.00 0.00 0.00 3.08
849 853 1.923356 AATTTCCCGCAACATGACCT 58.077 45.000 0.00 0.00 0.00 3.85
850 854 2.231235 AGAAATTTCCCGCAACATGACC 59.769 45.455 14.61 0.00 0.00 4.02
851 855 3.244976 CAGAAATTTCCCGCAACATGAC 58.755 45.455 14.61 0.00 0.00 3.06
852 856 2.352617 GCAGAAATTTCCCGCAACATGA 60.353 45.455 19.96 0.00 0.00 3.07
853 857 1.994779 GCAGAAATTTCCCGCAACATG 59.005 47.619 19.96 9.49 0.00 3.21
854 858 1.617850 TGCAGAAATTTCCCGCAACAT 59.382 42.857 23.48 0.00 34.42 2.71
855 859 1.035923 TGCAGAAATTTCCCGCAACA 58.964 45.000 23.48 8.66 34.42 3.33
856 860 2.147436 TTGCAGAAATTTCCCGCAAC 57.853 45.000 28.50 10.51 39.61 4.17
857 861 1.410517 TGTTGCAGAAATTTCCCGCAA 59.589 42.857 28.50 28.50 41.15 4.85
858 862 1.035923 TGTTGCAGAAATTTCCCGCA 58.964 45.000 22.43 22.43 35.21 5.69
859 863 1.418373 GTGTTGCAGAAATTTCCCGC 58.582 50.000 18.67 18.67 0.00 6.13
860 864 1.265635 TCGTGTTGCAGAAATTTCCCG 59.734 47.619 14.61 7.62 0.00 5.14
861 865 2.293399 ACTCGTGTTGCAGAAATTTCCC 59.707 45.455 14.61 7.00 0.00 3.97
862 866 3.003275 TGACTCGTGTTGCAGAAATTTCC 59.997 43.478 14.61 1.15 0.00 3.13
863 867 4.209452 TGACTCGTGTTGCAGAAATTTC 57.791 40.909 10.33 10.33 0.00 2.17
864 868 4.036734 ACATGACTCGTGTTGCAGAAATTT 59.963 37.500 0.00 0.00 28.11 1.82
865 869 3.565482 ACATGACTCGTGTTGCAGAAATT 59.435 39.130 0.00 0.00 28.11 1.82
866 870 3.141398 ACATGACTCGTGTTGCAGAAAT 58.859 40.909 0.00 0.00 28.11 2.17
878 882 2.485426 ACAATTCCTGCAACATGACTCG 59.515 45.455 0.00 0.00 0.00 4.18
879 883 4.510038 AACAATTCCTGCAACATGACTC 57.490 40.909 0.00 0.00 0.00 3.36
880 884 4.099881 ACAAACAATTCCTGCAACATGACT 59.900 37.500 0.00 0.00 0.00 3.41
881 885 4.370917 ACAAACAATTCCTGCAACATGAC 58.629 39.130 0.00 0.00 0.00 3.06
891 895 0.939106 GCGCGCAACAAACAATTCCT 60.939 50.000 29.10 0.00 0.00 3.36
919 923 0.535780 CTCAAGCTCAGCCACAACCA 60.536 55.000 0.00 0.00 0.00 3.67
935 939 2.611800 ATGGCTGCCACCTCCTCA 60.612 61.111 25.99 0.00 35.80 3.86
988 992 2.277084 GTTCGTCATCGCCCACTATTT 58.723 47.619 0.00 0.00 36.96 1.40
991 995 0.821517 ATGTTCGTCATCGCCCACTA 59.178 50.000 0.00 0.00 36.96 2.74
994 998 1.449423 CCATGTTCGTCATCGCCCA 60.449 57.895 0.00 0.00 34.09 5.36
1029 1033 2.113433 GTAGCCCGTCTCTGCGAGA 61.113 63.158 4.47 4.47 36.22 4.04
1032 1036 4.554363 CCGTAGCCCGTCTCTGCG 62.554 72.222 0.00 0.00 38.95 5.18
1033 1037 4.874977 GCCGTAGCCCGTCTCTGC 62.875 72.222 0.00 0.00 33.66 4.26
1034 1038 3.127352 GAGCCGTAGCCCGTCTCTG 62.127 68.421 0.00 0.00 41.25 3.35
1036 1040 4.253257 CGAGCCGTAGCCCGTCTC 62.253 72.222 0.00 0.00 41.25 3.36
1061 1065 5.338365 GTTCTTGTAATCGATCACCGTACT 58.662 41.667 0.00 0.00 39.75 2.73
1068 1072 7.227711 TGTTTCAAAGGTTCTTGTAATCGATCA 59.772 33.333 0.00 0.00 0.00 2.92
1069 1073 7.581476 TGTTTCAAAGGTTCTTGTAATCGATC 58.419 34.615 0.00 0.00 0.00 3.69
1070 1074 7.504924 TGTTTCAAAGGTTCTTGTAATCGAT 57.495 32.000 0.00 0.00 0.00 3.59
1074 1078 6.127479 TGTGCTGTTTCAAAGGTTCTTGTAAT 60.127 34.615 0.00 0.00 0.00 1.89
1081 1085 3.438360 CAGTGTGCTGTTTCAAAGGTTC 58.562 45.455 0.00 0.00 37.92 3.62
1086 1090 2.441410 TGTCCAGTGTGCTGTTTCAAA 58.559 42.857 0.00 0.00 41.02 2.69
1099 1103 1.691196 CATGGGTTGTGTTGTCCAGT 58.309 50.000 0.00 0.00 32.30 4.00
1101 1105 0.106268 AGCATGGGTTGTGTTGTCCA 60.106 50.000 0.00 0.00 0.00 4.02
1102 1106 0.598065 GAGCATGGGTTGTGTTGTCC 59.402 55.000 0.00 0.00 0.00 4.02
1107 1111 2.017668 TTGGGGAGCATGGGTTGTGT 62.018 55.000 0.00 0.00 0.00 3.72
1128 1132 3.006217 CCGATCTGATAGCCTGTGAATCA 59.994 47.826 0.00 0.00 0.00 2.57
1146 1150 1.038681 TGCCATTGCAATCAGCCGAT 61.039 50.000 22.15 0.00 46.66 4.18
1197 1201 1.897225 GCTTGGCTCTCTGCTCCTCA 61.897 60.000 0.00 0.00 42.39 3.86
1229 1233 6.293298 GCTACGTCTATCCTCGTTCATCTTTA 60.293 42.308 0.00 0.00 40.70 1.85
1239 1243 3.898517 TCATTGCTACGTCTATCCTCG 57.101 47.619 0.00 0.00 0.00 4.63
1249 1253 5.334414 GCCTTCTTATCCATTCATTGCTACG 60.334 44.000 0.00 0.00 0.00 3.51
1269 1273 3.092301 GCAACCTTATCCTTTCTGCCTT 58.908 45.455 0.00 0.00 0.00 4.35
1292 1302 2.436646 GCCACGTGCCATGCTAGT 60.437 61.111 10.91 0.00 0.00 2.57
1310 1320 2.573609 ATCCACCGCCTTGTACGCTC 62.574 60.000 0.00 0.00 0.00 5.03
1311 1321 2.656069 ATCCACCGCCTTGTACGCT 61.656 57.895 0.00 0.00 0.00 5.07
1341 1351 2.530958 TTTCCTTCCACCGGCGGATC 62.531 60.000 35.78 0.00 34.19 3.36
1346 1356 1.250840 AATGCTTTCCTTCCACCGGC 61.251 55.000 0.00 0.00 0.00 6.13
1347 1357 1.202348 GAAATGCTTTCCTTCCACCGG 59.798 52.381 0.00 0.00 33.56 5.28
1374 1384 9.016623 GCTAAAACGCTAAAGAAAAAGAAAAGA 57.983 29.630 0.00 0.00 0.00 2.52
1375 1385 9.020813 AGCTAAAACGCTAAAGAAAAAGAAAAG 57.979 29.630 0.00 0.00 38.76 2.27
1376 1386 8.920509 AGCTAAAACGCTAAAGAAAAAGAAAA 57.079 26.923 0.00 0.00 38.76 2.29
1377 1387 8.920509 AAGCTAAAACGCTAAAGAAAAAGAAA 57.079 26.923 0.00 0.00 39.86 2.52
1378 1388 8.920509 AAAGCTAAAACGCTAAAGAAAAAGAA 57.079 26.923 0.00 0.00 39.86 2.52
1379 1389 7.646526 GGAAAGCTAAAACGCTAAAGAAAAAGA 59.353 33.333 0.00 0.00 39.86 2.52
1380 1390 7.096189 GGGAAAGCTAAAACGCTAAAGAAAAAG 60.096 37.037 0.00 0.00 39.86 2.27
1426 1436 1.903404 CAACAGGGTGGCACTTCCC 60.903 63.158 18.45 10.77 41.73 3.97
1428 1438 2.908073 CGCAACAGGGTGGCACTTC 61.908 63.158 18.45 10.29 30.74 3.01
1446 1456 5.347620 TGTATAGTTACATGGGGTGACAC 57.652 43.478 0.00 0.00 38.40 3.67
1457 1467 6.870895 TGGGGTACAACATGTATAGTTACA 57.129 37.500 0.00 0.00 42.35 2.41
1458 1468 9.431887 CATATGGGGTACAACATGTATAGTTAC 57.568 37.037 0.00 0.00 35.05 2.50
1507 2255 2.032071 GCGGGTGTTGCCTACAGT 59.968 61.111 0.00 0.00 37.45 3.55
1509 2257 2.281208 GTGCGGGTGTTGCCTACA 60.281 61.111 0.00 0.00 37.43 2.74
1515 2263 1.070786 ACTACCTGTGCGGGTGTTG 59.929 57.895 12.65 5.74 40.22 3.33
1525 2273 0.541296 ACAGCCCGTACACTACCTGT 60.541 55.000 0.00 0.00 36.82 4.00
1526 2274 0.108804 CACAGCCCGTACACTACCTG 60.109 60.000 0.00 0.00 0.00 4.00
1527 2275 1.255667 CCACAGCCCGTACACTACCT 61.256 60.000 0.00 0.00 0.00 3.08
1528 2276 1.217244 CCACAGCCCGTACACTACC 59.783 63.158 0.00 0.00 0.00 3.18
1529 2277 1.217244 CCCACAGCCCGTACACTAC 59.783 63.158 0.00 0.00 0.00 2.73
1530 2278 1.985662 CCCCACAGCCCGTACACTA 60.986 63.158 0.00 0.00 0.00 2.74
1531 2279 3.319198 CCCCACAGCCCGTACACT 61.319 66.667 0.00 0.00 0.00 3.55
1532 2280 4.404098 CCCCCACAGCCCGTACAC 62.404 72.222 0.00 0.00 0.00 2.90
1533 2281 4.966274 ACCCCCACAGCCCGTACA 62.966 66.667 0.00 0.00 0.00 2.90
1534 2282 4.404098 CACCCCCACAGCCCGTAC 62.404 72.222 0.00 0.00 0.00 3.67
1540 2288 4.447342 CATCCCCACCCCCACAGC 62.447 72.222 0.00 0.00 0.00 4.40
1541 2289 2.613696 TCATCCCCACCCCCACAG 60.614 66.667 0.00 0.00 0.00 3.66
1542 2290 2.613696 CTCATCCCCACCCCCACA 60.614 66.667 0.00 0.00 0.00 4.17
1543 2291 3.420482 CCTCATCCCCACCCCCAC 61.420 72.222 0.00 0.00 0.00 4.61
1544 2292 3.967024 ACCTCATCCCCACCCCCA 61.967 66.667 0.00 0.00 0.00 4.96
1545 2293 3.420482 CACCTCATCCCCACCCCC 61.420 72.222 0.00 0.00 0.00 5.40
1546 2294 4.129148 GCACCTCATCCCCACCCC 62.129 72.222 0.00 0.00 0.00 4.95
1547 2295 2.616458 AAGCACCTCATCCCCACCC 61.616 63.158 0.00 0.00 0.00 4.61
1548 2296 1.379044 CAAGCACCTCATCCCCACC 60.379 63.158 0.00 0.00 0.00 4.61
1549 2297 0.393537 CTCAAGCACCTCATCCCCAC 60.394 60.000 0.00 0.00 0.00 4.61
1550 2298 1.993653 CTCAAGCACCTCATCCCCA 59.006 57.895 0.00 0.00 0.00 4.96
1551 2299 1.452833 GCTCAAGCACCTCATCCCC 60.453 63.158 0.00 0.00 41.59 4.81
1552 2300 1.817099 CGCTCAAGCACCTCATCCC 60.817 63.158 2.50 0.00 42.21 3.85
1553 2301 1.817099 CCGCTCAAGCACCTCATCC 60.817 63.158 2.50 0.00 42.21 3.51
1554 2302 2.467826 GCCGCTCAAGCACCTCATC 61.468 63.158 2.50 0.00 42.21 2.92
1555 2303 2.437359 GCCGCTCAAGCACCTCAT 60.437 61.111 2.50 0.00 42.21 2.90
1667 2416 3.555966 CGGCTCCCATTTAGAAAAGGAT 58.444 45.455 0.00 0.00 0.00 3.24
1675 2424 2.900528 CGTAGCGGCTCCCATTTAG 58.099 57.895 5.39 0.00 0.00 1.85
1811 2560 6.863126 ACACATCATTTTCGGAAACAGATTTC 59.137 34.615 1.96 0.00 43.11 2.17
1812 2561 6.748132 ACACATCATTTTCGGAAACAGATTT 58.252 32.000 1.96 0.68 0.00 2.17
1813 2562 6.331369 ACACATCATTTTCGGAAACAGATT 57.669 33.333 1.96 0.00 0.00 2.40
1814 2563 5.964958 ACACATCATTTTCGGAAACAGAT 57.035 34.783 1.96 6.82 0.00 2.90
1815 2564 5.067153 ACAACACATCATTTTCGGAAACAGA 59.933 36.000 1.96 4.72 0.00 3.41
1816 2565 5.280945 ACAACACATCATTTTCGGAAACAG 58.719 37.500 1.96 0.00 0.00 3.16
1817 2566 5.255710 ACAACACATCATTTTCGGAAACA 57.744 34.783 1.96 0.00 0.00 2.83
1818 2567 5.556194 GCAACAACACATCATTTTCGGAAAC 60.556 40.000 1.96 0.00 0.00 2.78
1819 2568 4.505922 GCAACAACACATCATTTTCGGAAA 59.494 37.500 0.00 0.00 0.00 3.13
1820 2569 4.047822 GCAACAACACATCATTTTCGGAA 58.952 39.130 0.00 0.00 0.00 4.30
1821 2570 3.067320 TGCAACAACACATCATTTTCGGA 59.933 39.130 0.00 0.00 0.00 4.55
1822 2571 3.379240 TGCAACAACACATCATTTTCGG 58.621 40.909 0.00 0.00 0.00 4.30
1823 2572 3.426191 CCTGCAACAACACATCATTTTCG 59.574 43.478 0.00 0.00 0.00 3.46
1824 2573 4.445385 GTCCTGCAACAACACATCATTTTC 59.555 41.667 0.00 0.00 0.00 2.29
1825 2574 4.141981 TGTCCTGCAACAACACATCATTTT 60.142 37.500 0.00 0.00 0.00 1.82
1826 2575 3.384146 TGTCCTGCAACAACACATCATTT 59.616 39.130 0.00 0.00 0.00 2.32
1827 2576 2.957680 TGTCCTGCAACAACACATCATT 59.042 40.909 0.00 0.00 0.00 2.57
1828 2577 2.585330 TGTCCTGCAACAACACATCAT 58.415 42.857 0.00 0.00 0.00 2.45
1829 2578 2.049888 TGTCCTGCAACAACACATCA 57.950 45.000 0.00 0.00 0.00 3.07
1830 2579 3.004629 TGATTGTCCTGCAACAACACATC 59.995 43.478 6.11 1.70 41.65 3.06
1831 2580 2.957680 TGATTGTCCTGCAACAACACAT 59.042 40.909 6.11 0.00 41.65 3.21
1832 2581 2.358582 CTGATTGTCCTGCAACAACACA 59.641 45.455 6.11 8.78 41.65 3.72
1833 2582 2.358898 ACTGATTGTCCTGCAACAACAC 59.641 45.455 6.11 5.09 41.65 3.32
1834 2583 2.653726 ACTGATTGTCCTGCAACAACA 58.346 42.857 6.11 6.32 41.65 3.33
1835 2584 3.715628 AACTGATTGTCCTGCAACAAC 57.284 42.857 6.11 2.47 41.65 3.32
1836 2585 3.243035 CGAAACTGATTGTCCTGCAACAA 60.243 43.478 6.43 6.43 42.92 2.83
1837 2586 2.290367 CGAAACTGATTGTCCTGCAACA 59.710 45.455 0.00 0.00 40.28 3.33
1838 2587 2.350772 CCGAAACTGATTGTCCTGCAAC 60.351 50.000 0.00 0.00 40.28 4.17
1839 2588 1.879380 CCGAAACTGATTGTCCTGCAA 59.121 47.619 0.00 0.00 41.89 4.08
1840 2589 1.071542 TCCGAAACTGATTGTCCTGCA 59.928 47.619 0.00 0.00 0.00 4.41
1841 2590 1.808411 TCCGAAACTGATTGTCCTGC 58.192 50.000 0.00 0.00 0.00 4.85
1842 2591 4.147219 GTTTCCGAAACTGATTGTCCTG 57.853 45.455 15.47 0.00 38.35 3.86
1870 2619 3.120304 GCAGGACAATCAGTTACGGAAAC 60.120 47.826 0.00 0.00 38.46 2.78
1871 2620 3.071479 GCAGGACAATCAGTTACGGAAA 58.929 45.455 0.00 0.00 0.00 3.13
1872 2621 2.037902 TGCAGGACAATCAGTTACGGAA 59.962 45.455 0.00 0.00 0.00 4.30
1873 2622 1.621317 TGCAGGACAATCAGTTACGGA 59.379 47.619 0.00 0.00 0.00 4.69
1874 2623 2.093306 TGCAGGACAATCAGTTACGG 57.907 50.000 0.00 0.00 0.00 4.02
1875 2624 2.805671 TGTTGCAGGACAATCAGTTACG 59.194 45.455 0.00 0.00 41.27 3.18
1876 2625 4.036262 TGTTGTTGCAGGACAATCAGTTAC 59.964 41.667 7.20 0.00 41.18 2.50
1877 2626 4.036262 GTGTTGTTGCAGGACAATCAGTTA 59.964 41.667 7.20 0.00 41.18 2.24
1878 2627 3.023119 TGTTGTTGCAGGACAATCAGTT 58.977 40.909 7.20 0.00 41.18 3.16
1879 2628 2.358898 GTGTTGTTGCAGGACAATCAGT 59.641 45.455 7.20 0.00 41.18 3.41
1880 2629 2.358582 TGTGTTGTTGCAGGACAATCAG 59.641 45.455 7.20 0.00 41.18 2.90
1881 2630 2.373224 TGTGTTGTTGCAGGACAATCA 58.627 42.857 7.20 7.39 41.18 2.57
1882 2631 3.004629 TGATGTGTTGTTGCAGGACAATC 59.995 43.478 7.20 2.27 41.18 2.67
1883 2632 2.957680 TGATGTGTTGTTGCAGGACAAT 59.042 40.909 7.20 0.00 41.18 2.71
1884 2633 2.358582 CTGATGTGTTGTTGCAGGACAA 59.641 45.455 0.00 0.00 37.20 3.18
1885 2634 1.948834 CTGATGTGTTGTTGCAGGACA 59.051 47.619 0.00 0.00 0.00 4.02
1910 2659 3.195661 GCGGACACGGAAATCTATTTCT 58.804 45.455 13.57 0.00 44.21 2.52
1968 2760 2.715749 ATCGAATTGGATGGCTCACA 57.284 45.000 1.71 0.00 0.00 3.58
1980 2772 8.050778 TGCTGAAATACAAGGTTTATCGAATT 57.949 30.769 0.00 0.00 0.00 2.17
2027 2824 8.810990 TGTTACGGAAAATTATAAAGGTGGAT 57.189 30.769 0.00 0.00 0.00 3.41
2088 2889 1.200020 GCAACATGGGTCTTGCTGTAC 59.800 52.381 10.59 0.00 39.79 2.90
2093 2894 1.866601 GTTTTGCAACATGGGTCTTGC 59.133 47.619 10.87 10.87 42.67 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.