>input_sequence_85046
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-------------------------------------------ATGACGAACATGGCTTCAACGACAGCGTGTCTCGCAG
AGACGGGCTACGGCTCGGCGGTGCAGTACGGTGATCGATTACAAGAACCTTTGAAACAGCACACTGGACAACACAACCCA
TGCTCCCCAATTGATTCACAGGCTATCAGATCGGCTGATTGCAATGGCAAAGATAGAGCGGAGCAGTCAAGGCTGAGGAA
TGAGGAGCAGAGAGCCAAGCGGTGGAGAAAAATAAAGATGAACGAGGATAGACGTAGCAATGAATGGATAAGAAGGCAG-
-----AAAGGATAA------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G014400
GACGGCGACGCCGGTGCTCCGGAGCAACGCCATTTGGTTTGATGTACTGAATGTAGGAGAAGAGGTTGGGAAAGGAGATG
TGGATGGGGTCTGTTCGTTGGAGATAAGAAGGAAAAATAAGAGTGAGTGGTGCAGACTCACATGGGCACGTGGCGCATAG
GGGAGGCGGTGGACGTTTAGCGTGGGATCTGCCGGGTGATCAGAATCTTTTCCCTTATATTTACGGGTAAATGTTTATAT
TTACTTTGTTATACTTTCTTTAAGAAAAGGAATTAATTTGTTATATTTAAACGTATGTTAGGGCATCTTCAATACGGACC
CTCAAAACACGCGCATCCAGAACGACATATCCAAACACATTCTGTCATCCAACGTGGTATCCTACAGGTCCA---CAGAT
TAATATTCTAGATATCATCAACGTGATGACAACTCGGTGTTGTTTTTTTCGCCGGGGGAGGGAGGGGGCAGTTGCCTAGC
TACACCATTTCTAATTTTCTGCTTTTTCTTTAGGCAACGCTACGCGTCGGCTGGCGGATCTTTTTAAAAGATCCGCCGCC
TCACGAGCTGTAGGATTAGGCAGATTTATTGACTAAGCGTCGTTCTTTATTATTGCAACACAGGTTGTGTTGCGGAAAAT
CTCTGCAACATGCGTCATGTTACAGAAATTTTTGCAATATAGGTTAAGTTGCATATATTTTTTTTGCAACAGAGGTCCAC
TGCAAAATAATTATTTTTGCAACAAAAGCTCTGTTACAGTTTTTCCGGCAACAGAGGCCTTGTTTCAAAAAAAAATTGCA
ACGGATCCGACGAATTGAGCGACCGAGCGTCACCCTTTTATTATTGCAATATAGGTCATGTTGCGGGAAATTTCTGCAAC
ACGAGTCATGTTGCAGGAATTGTTTGTTGCGCGCGGCATTGGTGGTTGTGGCTGAGCTTGAGGAGGTGGCAGCCATGGAC
GCCAGTGCTCCTCCGGGACGGCGGCGACGTGAAATAGTGGGCGATGACGAACATGGCTTCAACGACAGCGTGTCTCGCAG
AGACGGGCTACGGCTCGGCGGTGCAGTACGGTGATCGATTACAAGAACCTTTGAAACAGCACACTGGACAACACAACCCA
TGCTCCCCAATTGATTCACAGGCTATCAGATCGGCTGATTGCAATGGCAAAGATAGAGCGGAGCAGTCAAGGCTGAGGAA
TGAGGAGCAGAGAGCCAAGCGGTGGAGAAAAATAAAGATGAACGAGGATAGACGTAGCAATGAATGGATAAGAAGGCAG-
-----AAAGGATAAGGTTGCAACTAGCATGGCACGTGGCGAGCGTACAAGGCGGTGGATGCATTGTCTGCGATCCGCCGG
TGGAAGGAAAGCATTTCCCTTTTTCTTTTCTTTTTCTTTAGCGTTTTAGCTTTCCCAGATAGCGGTATTTTGTTTGGGAA
GTGCCACCCTGTTGCGTGTCACCCCATGT---------------------------------------------------
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-----------------------------------------------AACTATACATGTTGTACCCCATATGCAACTGTT
TTCAAAAAAGAAAAACTGTAGGCAACACCCGCACAGGTAGTGTACGGGCTGTGGGGGTGGGGATGAGGTGCTTGAGCGGC
CCGGTATATGGGTTTGTTATTGATTTTTTTATTTTTCCTTTTTATACTATTTTCTTATCTCTAT-TTATTTTTCTGTTTT
TGATTTATGTCTTATATCCTTTTCTAAATGGGAGCCGCTACGCGTCGGCCGGCGGATGTATTAGAAAACATCCGCCGCAT
GGAGCTCCGTTGGATCAGCGCCCTGATAGCCGTCGGATCTAACCACCGCGCGCGCGTGACCATCTCCTTACGTGTAGCGG
AAATCTGTTTCCGAAAATGATGTGTTGTTGCAGGACAATCAGTTTCGGAAACTCATCAGTTTCCGTAACTGATTGTCCTG
CAACAACACATCAGTTTCAGAAATAGATTTCCGTGTCCGCGGGG-GAACTAGTCCTTCGGCGCAAA--------------
------------------------AT----CCACCGTCTTGTGAGCCATCCAATTC-----GATAAACCTTGTATTTCAG
CAACAAGACTCTTGTTGCAAAATATCCACCTTTATAATTTTCCGTAACAAGACGTTTGTTGCAAAAACTTCTCTC--T--
CTAATTTCGTACAGCAAGACCCATGTTGCAAAACCCTTTCTTT-CCTAATTTTCTGCAACAGGATCCTTGTTACAAAAAT
TGCAACA---ACAT-------CGCGGCTAATTTTCTGCAACAAGACTCATGTTTAAAAAA-TTGCAACAACATCTCCAAA
TGCGTTCCGCACT-GCACAGTCGTCGTTCGTCGCCGTTCCGCAACAACGCGGTTGTTG
>chr2D_1
GACGGCGACGCCAGTGCTCCGGAGCAACGCCATTTGGTTTGATGTACTGAATGTAGGAGAAGAGGTTGGGGAAGGAGATG
TGGATGGGGTCTGTTCGTTGGAGATAAGAAGGAAAAATAAGAGCGGGTGGTGCAGACTCACATGGGCACGTGGCGCATAG
GGGAGGCGGTGGACGTTTAGCGTGGGATCTGCCGGGTGATCAGAATCTTTTCCCTTATATTTACGGGTAAATGTTTATAT
TTACTTTGTTATACTTTCTTTAAGAAAATAAATTAATTTGTTATATTTAAACGTATGTTAGGGCATCTTCAACACGGACC
CTTAAAACACCCGCATCCGGACCGACCTATCCAAACACATTCCGTCATCCAACGCGGTATCCTACCGTCGGTCCGCAGAT
TAATATTCTAGATATCATCAACGTGATGACAACTCGGTGCTGTTTTTTTCGCCGGGGGAGGGAGGGGGCAGTTGCCTAGC
TA-ACCATTTCTAATTTTCTGCTTTTTCTTTTCTT---------------------------------------------
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------------------------------TTTTTCTTTAGCGTTTTAGCTTTCCCAGATAGCGGTATTTTGTTTCGAAA
GTGCCACCCTGTTGCATGTCCCCTCCGCTGGCGAGGGGGCCGCCGGATCCATCCGTGTGGATTGATTTTACTCCCTGATA
GTTTAGGTTTTTAGGTTGTTCATCGTCTTTGCTTCGGTGACAACGACGACGCTGAATAAATATTCTTCGGATCCTTCCCT
GACAAGGCCATCGGTCCTACGGTTGGGGATGGATTTGGAAACCAGTCTGTTCAAGCAAGGATGGCGTGGCGGCGGCGGCA
TCCACGTGGTGGACCTATGTCCTCGGGCTCCGCCGTTGCGACGGCGTTTGCTCCAGCGTCGGCGCGGAGCTTGGGAGGTA
GTCCAGGAGCGGATGCAGATTGTGGTCTGCATCGACGATATCTGGAAGACGAAACATCTGCTGGGCTCGTGGTTCGTGGA
TGGCAGGTATGGTTTCCTCCTTCGGCGTCTTAGTCGTGGTGGGGTGCCAGATCTGGAGTTCGATGGCGTGTCCGGGGTGT
TGCCCCGGTATGATTCGTTCAACGGCAAGGGCTTCACTTTTGGTGAGCCACCTTGGAGGTCCGCAAAGCTGCATATCAGC
GATGGAGCCGCGTCGAGCTCGGGTGAGATGGTGATTCGTCATTCTTTTCTTTGGTGGCTGATGTGATGGTGCCAGAGGCA
GGTGACGGGCATTGGTGTCAAGCTCAGAGATGTTCTACTATCTTTTCAGTTTTGTCATGTCGGTCTTTACGTGACTTGTA
CTTTATTCTTTATGATATGAATGAGATACGTATTACCATGCAAAAAAAACTATACATGTTGTACCCCATATGCAACTGTT
TTCAAAAAAGAAAAGCCGTAGGAAA--------------------------------------TGAGGTGCTTGAGCGGC
CCGGTATATGGGTTTGTTATTGA-TTTTTTATTTTTCCTTTTTATACTATTTTCTTATCTCTATTTTATTTTTCTGTTTT
TGATTTCTGTCTTATTTTCTTTTTTAAATGGGAGCCGCTACGCGTCGGCCGGCGGATGTATTAGAAAACGTCCGCCGCAT
GGAGCTCCGTTGGATCAGCGCCATGATAGGCGTCGGATCTAACCACCACGCGCGCGTGACCACCTCCTTAC---------
--------------------------------------------------------------------------GTCCTG
CAACAACACATCAGTTTCGGAAACAGATTTCCGTGTCCGCGGAG-GAACTAGTCCTTCGACGCAAA--------------
------------------------AT----CCACCGTCTCGTGAGCCATCCGATTC-----GATAAACCTTGTATTTCAG
CAACAAGACTCTTGTTGCAAAATCTCCACTTATATAATTTTGCGTAACAAGACGTTTGTTGCAAAAACTTCTCTC--TTT
CTAATTTCTTACAACAAGACCCATGTTGCAAAACCCTTTCTTC-CCTAATTTTCTGCAACAGGATCCTTGTTACAAAAAT
TGCAACA---ACATCTATCGCCGCGGCTAATTTTCTGCAACAAGACTCATGTTTAAAAAA-TTGCAACAACATCTCCAAA
TGCGTTCCGCACT-GCACAGTCGTCGTTCGTCGCCGTTCCGCAACAACGCGGTTGTTG
>chr5B_868
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----------------------------------------------------------------------TTTTTGCAAC
AAAGATCATGTTGCGGGAATTGTTTGCTGCGCGCGGCATTGGCGGTTGTGGCTGAGCTCGAGGAGGTGGCAGTCATGGAC
ACCATTGCTCCTTCGGGACGGCGGCGACGTGGAACAGCGGGCGATGACGAACATGGCTTCAACGACGGCGTGCCTTTTAA
AGACGGGGTACGGCTCGGCGGTGCGGTACGGCTGTCGGTTACAAAAACCATTGAAACAGCACCCCAGACAGCACAACCCA
TGCTCCCCAATCGATTCACATGCCATCAGGTCGGCTGATTGCAATGGCAAAGATAGAGCGGAGCAGTCAAGGCTGAGGAA
AGAGGAGCAGAGAGCCAAGCGGTGAAGAAAAACAAAGATGAATGAGGATAGATGTAGCAATGAATGGATAAGGAGGCAGT
GACTAAAAGGATAAGGTTGCAGCTAGCATGGCACGTGGCAGGCGTACAAGGCGGTGGATGCTTTGTGTGCAATCCAACGG
TGGAAGGAAAGCGTTTCCCT------------------------------------------------------------
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>chr3A_1664
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-----------TTATTTCATTTTACTAA-GGGAGCCGCTACGCGTCGGCCGACGGATGTATTAGAAAACATCCGCCGCAT
GAAGCTTCGTTGGATCAGCGTCCTGATAGCCGTCGGATCTAACCACCGCGCGCGCATGACCACCTCCTTAC---------
--------------------------------------------------------------------------GTCCTG
CAACAACACATCAGTTTCGGAAATAGATTCCCCTGTCCGCGGGGCGAACTAGTCCTTCGGCGCAAA--------------
------------------------AT----CCACCGTCTCGTGAGT----C-ATCC-----GATGAACCTTGTATTTCTG
CAACAAGACTCTTGTTGCAAAATCTCCACTTATATAATTTTCTGTAACAAGACACTTGTTGCAAAAACTTCTCTC--T--
CTAATTTCTTGCAACAAGACCCATGTTGCAAAACCCTCTCTTC-CCTAATTTCGGT-AACATGATCCTTGTTACAAAAAT
TACAACA---ACATCTAGCGCCGCGGCTAATTTTCTGCAACAAGACTCATGTTTAAAAAA-TTGCA---ACATCTCTTAG
TGCGTTCCGCACT-GCACAGTCGTCGTTCGCTATTGTTCCGCAACAACGCGGTTGTTG
>chr7D_1673
TTTCTAACT-----------------------------------------------------------------------
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---------------------------A-GAGAGCCGCTGCGCGTCAGCCGGCGGATGTATGAGA-AACATCCGCCGCAT
GGAGCTCCGTTGGATTAGCGCCCTGACAGCCGTCGGATCTAACCACCACGCCCGCGAGACCAGCTCCTTAC---------
--------------------------------------------------------------------------GTCCTG
CAGCAACCGCTCAGTTTCGGAAAAAAATTCCCCTGCCCGCCGTCCTGACACGGCCAGCTCTCACTACCGCCGGCGGGGGG
TTGGTGGGGGGTGTGGGTGGGGGGAT----CCACCGCCTCGTGAGCCGTCC-ATTC-----GATGAACCTTTTATTTCTA
CAACAAGACTCTTGTTGCAAAATGTTCACTTCTATAATTTTCTGCAACAAGACACTTGCTGCAAAAACTTCTCTTT-T--
CTAATTTCTCTAAACAAGACCCATGTTGCAAAACCCTTTCTTTTCCTAATTTTTTGCGACAAGACCCTTGTCGCAAAAAT
T---GCAACTACATCTACCACTGCG-----------GCTACAAGACTCATGTTTCAAAAA-TTGCAACAACATCTCCGAG
CGCGTTGCGCACTTGCACAGTTGTCGTTCGCCGCAGTTCCGCAACAACGCGGTTGTTG
>chr5B_1681
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----------------------------TGGGAGCCGCTACGCGTCGGCCGGCGGATGTATTAGAAAACATCCGCCGCGT
GGAGCTCCGTTGGATCAGCGCCCTGATAGCCATCGAATCTAACCATCGTGCGCGCGTGACCACCGCCTTAC---------
--------------------------------------------------------------------------GTCCTG
CAACAACACGTCAGTTTCGGAAACAGATTCCTCTATCTGCGGGG-AAAGTAGTCCTTCGGCGCAAA--------------
------------------------AT----CCACCGTCTCGTGAGC----C-ATCCGATTCGATGAACCTTGTATTTCTG
CAACAAGACTCTTGTTGCAAAATCTCCACTTATACAATTTTCTGTAACAAGACGCTTGTTGCAAAAACTTCTCTCTCT--
CTAATTTCTTGCAACAAGATCCATGTTGCAAAACCCTTTCTCC-CCTAATTTTCTGCAACATGATCCTTGTTACAAAAAT
T---ACA---ACATCTACCGCCGCGGCTAATTTTTCGCAACAAGACTCATGTTTAAAAAA-TTGCAACAACATCTCCGAC
CGCGTTCTGCGCT-GCACAATCGTCGATCGCCGCCGTTCCGCAACAACGCGGTTGTTG
>chr4A_1682
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-----------------------------GGGAGCTGCTACGCGTCGGCCGGCGGATGTATTAGAAAACATCCGCCGTAT
GGAGCTCCGTTAGATCAGCGCCCTAATAGCCATTGGATCTAACCACCGTGCGCGTGTGACCATCTTCTTAC---------
--------------------------------------------------------------------------GTCCTG
CAACAACACTTCCGTTTCGGAAACAGATTCCTCTAA------GG-GAACTAGTCCTTTGGCGCAAA--------------
------------------------ATTAATCCACCGTCTCGTAAGC----C-ATCCGATTCGATGAACCTTGTATTTCTG
CAACAAGA-------------ATCTCCACTTATATAATTTTCTATAACAAGACACTTGTTGCAAAAACTTCTCTCTCTT-
-TAATTTCTTGCAACAAGACCCATATTGCAAAACACTTTCTTC-TCTAATTTTCTGCAATAGGATCCTTGTTACAAAAAT
TGCAACA---ACATCTACTGCCGCAGCTAATTTTCCGCAACAAGACTAATGTTTAAAAAAATTGGAACAACATCTCTGAG
CGCGTTCAGCACT-GCACAGTCGTCGTT-GCCACCGTTCCGCAACAACGCGGTTGTTG
>SNPs
------------S---------------------------------------------------------S---------
-------------------------------------------S-S----------------------------------
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----------------------------SS------------------------------------------S-------
--S-------S-------S--S----S---------------S-----------S----------S-SSSSS--------
---------------------------------------S----------------------------------------
--S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------
-SSSS---------S-----------S---------------S---------------S-------------S-------
S---S-------S------------------S--S--S----------------------------S-----S--SSS-S
-------S----------------S------SSS---S------S----S------------S-SS----S---------
-----------S--------S--S-----S--------------------------------------------------
S-----------------------S-------S---------S---------S-------------------S-------
---------------------S-----------------SS--------------------S----S---S----SS---
------------S-------SSSSSSSSSS---------------------------------------------S-S--
---------------S----S--S-SSS----------------------------------------------------
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--------------S-S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-----------------------S--------------------------------------------------------
------S--------S-------S--------------------------------------------------------
-----------------------------------------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
------------------S-------------------------------------------------------------
---------------------------------------S-----------S----------------------------
-----------------------S-----S-S------------------------------------------------
--------S----S------------------------------------------------------------------
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>forward_817
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-----------------------------------------------------------------------------GCA
ACGGATCCGACGAATTG---------------------------------------------------------------
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>reverse_2589
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----------------------------TGCAGGACAATCAGTTTCGGA-------------------------------
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