Multiple sequence alignment - TraesCS6D01G401600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G401600 chr6D 100.000 3977 0 0 1 3977 470635909 470631933 0.000000e+00 7345.0
1 TraesCS6D01G401600 chr6D 95.181 166 7 1 1718 1882 204160016 204160181 1.100000e-65 261.0
2 TraesCS6D01G401600 chr6D 94.949 99 4 1 202 300 27308697 27308600 1.910000e-33 154.0
3 TraesCS6D01G401600 chr6A 95.264 1457 50 7 285 1724 615464963 615463509 0.000000e+00 2290.0
4 TraesCS6D01G401600 chr6A 93.591 1373 53 13 1879 3231 615463513 615462156 0.000000e+00 2015.0
5 TraesCS6D01G401600 chr6A 96.133 181 7 0 24 204 615465141 615464961 3.010000e-76 296.0
6 TraesCS6D01G401600 chr6B 91.611 1490 60 29 1879 3323 720501627 720503096 0.000000e+00 1999.0
7 TraesCS6D01G401600 chr6B 94.047 1075 45 9 663 1721 720500557 720501628 0.000000e+00 1613.0
8 TraesCS6D01G401600 chr6B 95.902 244 9 1 453 696 720500315 720500557 1.040000e-105 394.0
9 TraesCS6D01G401600 chr6B 99.020 204 2 0 1 204 720499773 720499976 2.260000e-97 366.0
10 TraesCS6D01G401600 chr6B 96.685 181 5 1 285 464 720499974 720500154 2.320000e-77 300.0
11 TraesCS6D01G401600 chr6B 90.698 215 16 1 3419 3629 720503416 720503630 2.340000e-72 283.0
12 TraesCS6D01G401600 chr6B 90.857 175 15 1 3804 3977 720503631 720503805 2.390000e-57 233.0
13 TraesCS6D01G401600 chr2D 98.780 164 2 0 1719 1882 579392444 579392607 3.890000e-75 292.0
14 TraesCS6D01G401600 chr2D 77.412 456 78 17 2504 2949 627583103 627583543 8.530000e-62 248.0
15 TraesCS6D01G401600 chr2D 83.471 121 14 5 3745 3861 94386424 94386542 1.510000e-19 108.0
16 TraesCS6D01G401600 chr2D 91.429 70 6 0 3870 3939 75397852 75397921 3.270000e-16 97.1
17 TraesCS6D01G401600 chr2D 87.324 71 5 4 3789 3856 628273535 628273604 1.180000e-10 78.7
18 TraesCS6D01G401600 chr5D 96.894 161 5 0 1720 1880 120391813 120391653 1.820000e-68 270.0
19 TraesCS6D01G401600 chr5D 95.181 166 6 2 1716 1880 151671712 151671548 1.100000e-65 261.0
20 TraesCS6D01G401600 chr7D 96.855 159 5 0 1722 1880 69438602 69438760 2.360000e-67 267.0
21 TraesCS6D01G401600 chr7D 92.958 71 4 1 3870 3939 34846400 34846330 7.030000e-18 102.0
22 TraesCS6D01G401600 chr7D 80.000 125 10 8 3743 3855 512733321 512733200 1.180000e-10 78.7
23 TraesCS6D01G401600 chr2A 94.318 176 6 4 1709 1882 189020827 189021000 2.360000e-67 267.0
24 TraesCS6D01G401600 chr2A 81.293 294 46 6 2661 2949 758102948 758103237 3.090000e-56 230.0
25 TraesCS6D01G401600 chr2A 90.667 75 6 1 3870 3943 12140785 12140711 9.100000e-17 99.0
26 TraesCS6D01G401600 chr1A 96.296 162 5 1 1720 1880 254349076 254348915 8.470000e-67 265.0
27 TraesCS6D01G401600 chr1A 88.235 68 5 3 3796 3861 554073593 554073527 1.180000e-10 78.7
28 TraesCS6D01G401600 chr4D 95.181 166 7 1 1717 1881 484111928 484111763 1.100000e-65 261.0
29 TraesCS6D01G401600 chr4D 96.809 94 3 0 194 287 169119890 169119983 1.480000e-34 158.0
30 TraesCS6D01G401600 chr3B 95.181 166 7 1 1719 1883 79117113 79116948 1.100000e-65 261.0
31 TraesCS6D01G401600 chr2B 80.808 297 49 5 2659 2949 769949781 769950075 4.000000e-55 226.0
32 TraesCS6D01G401600 chr2B 92.958 71 4 1 3870 3939 771492142 771492212 7.030000e-18 102.0
33 TraesCS6D01G401600 chr4B 98.913 92 0 1 201 291 624442135 624442044 3.180000e-36 163.0
34 TraesCS6D01G401600 chr4B 95.833 96 4 0 193 288 581959344 581959439 5.320000e-34 156.0
35 TraesCS6D01G401600 chr1B 96.809 94 3 0 202 295 604705688 604705781 1.480000e-34 158.0
36 TraesCS6D01G401600 chr1B 81.679 131 11 8 3740 3861 625141783 625141909 3.270000e-16 97.1
37 TraesCS6D01G401600 chr4A 98.837 86 1 0 201 286 698479944 698479859 1.910000e-33 154.0
38 TraesCS6D01G401600 chr4A 91.549 71 5 1 3870 3939 641272180 641272110 3.270000e-16 97.1
39 TraesCS6D01G401600 chr3D 93.333 105 4 3 185 288 68251755 68251653 6.880000e-33 152.0
40 TraesCS6D01G401600 chr3D 90.351 114 7 3 175 286 535817311 535817422 3.200000e-31 147.0
41 TraesCS6D01G401600 chr3D 94.366 71 3 1 3870 3939 104014664 104014734 1.510000e-19 108.0
42 TraesCS6D01G401600 chr3D 85.333 75 8 3 3789 3861 168185858 168185785 1.530000e-09 75.0
43 TraesCS6D01G401600 chr7B 94.845 97 4 1 191 287 107564705 107564800 2.480000e-32 150.0
44 TraesCS6D01G401600 chr3A 84.685 111 13 4 3748 3856 595949549 595949657 1.510000e-19 108.0
45 TraesCS6D01G401600 chr3A 92.958 71 4 1 3870 3939 501897678 501897608 7.030000e-18 102.0
46 TraesCS6D01G401600 chr3A 91.549 71 5 1 3870 3939 552307886 552307816 3.270000e-16 97.1
47 TraesCS6D01G401600 chr1D 88.000 75 6 3 3789 3861 253201705 253201778 7.080000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G401600 chr6D 470631933 470635909 3976 True 7345.000000 7345 100.000000 1 3977 1 chr6D.!!$R2 3976
1 TraesCS6D01G401600 chr6A 615462156 615465141 2985 True 1533.666667 2290 94.996000 24 3231 3 chr6A.!!$R1 3207
2 TraesCS6D01G401600 chr6B 720499773 720503805 4032 False 741.142857 1999 94.117143 1 3977 7 chr6B.!!$F1 3976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 1.471676 CGGAGGGAGTACAATGCACTC 60.472 57.143 5.07 5.07 41.43 3.51 F
999 1205 0.401356 TTGTGCAGCTCCCAAGATCA 59.599 50.000 0.00 0.00 0.00 2.92 F
1650 1886 0.519961 GGCAACCAACTAACGCGATT 59.480 50.000 15.93 6.10 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1128 1335 0.390472 GTCTGACCTGAAGAAGCCCG 60.390 60.0 0.0 0.0 0.0 6.13 R
1815 2054 0.687920 TGGACCACATACGGAGCAAA 59.312 50.0 0.0 0.0 0.0 3.68 R
3415 3813 0.540454 AGCGTAACCCCTCCTAAAGC 59.460 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.555361 CCAGTACTAGTAAACTATAGTTCGGTC 58.445 40.741 18.28 9.21 37.25 4.79
204 205 6.041637 TGGTTTGTCAGTACTTGTCTGATACT 59.958 38.462 0.00 0.00 42.63 2.12
205 206 6.586844 GGTTTGTCAGTACTTGTCTGATACTC 59.413 42.308 0.00 0.00 42.63 2.59
206 207 5.899120 TGTCAGTACTTGTCTGATACTCC 57.101 43.478 0.00 0.00 42.63 3.85
207 208 4.705507 TGTCAGTACTTGTCTGATACTCCC 59.294 45.833 0.00 0.00 42.63 4.30
208 209 4.951094 GTCAGTACTTGTCTGATACTCCCT 59.049 45.833 0.00 0.00 42.63 4.20
209 210 5.066764 GTCAGTACTTGTCTGATACTCCCTC 59.933 48.000 0.00 0.00 42.63 4.30
210 211 5.044772 TCAGTACTTGTCTGATACTCCCTCT 60.045 44.000 0.00 0.00 37.07 3.69
211 212 5.067153 CAGTACTTGTCTGATACTCCCTCTG 59.933 48.000 0.00 0.00 35.20 3.35
212 213 4.054359 ACTTGTCTGATACTCCCTCTGT 57.946 45.455 0.00 0.00 0.00 3.41
213 214 5.194473 ACTTGTCTGATACTCCCTCTGTA 57.806 43.478 0.00 0.00 0.00 2.74
214 215 5.580998 ACTTGTCTGATACTCCCTCTGTAA 58.419 41.667 0.00 0.00 0.00 2.41
215 216 6.017192 ACTTGTCTGATACTCCCTCTGTAAA 58.983 40.000 0.00 0.00 0.00 2.01
216 217 5.916661 TGTCTGATACTCCCTCTGTAAAC 57.083 43.478 0.00 0.00 0.00 2.01
217 218 5.580998 TGTCTGATACTCCCTCTGTAAACT 58.419 41.667 0.00 0.00 0.00 2.66
218 219 6.728411 TGTCTGATACTCCCTCTGTAAACTA 58.272 40.000 0.00 0.00 0.00 2.24
219 220 7.179966 TGTCTGATACTCCCTCTGTAAACTAA 58.820 38.462 0.00 0.00 0.00 2.24
220 221 7.839705 TGTCTGATACTCCCTCTGTAAACTAAT 59.160 37.037 0.00 0.00 0.00 1.73
221 222 9.352191 GTCTGATACTCCCTCTGTAAACTAATA 57.648 37.037 0.00 0.00 0.00 0.98
228 229 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
230 231 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
260 261 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
261 262 9.733219 ATTACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
262 263 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
263 264 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
264 265 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
265 266 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
277 278 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
278 279 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
279 280 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
280 281 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
281 282 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
282 283 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
283 284 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
284 285 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
285 286 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
286 287 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
295 296 1.471676 CGGAGGGAGTACAATGCACTC 60.472 57.143 5.07 5.07 41.43 3.51
374 375 5.668558 ACTGTTACAATCTCGTGGTTTTC 57.331 39.130 0.00 0.00 0.00 2.29
636 809 8.521860 GTGTAGTCTGAGTTCGTATATTTTTCG 58.478 37.037 0.00 0.00 0.00 3.46
639 812 8.752766 AGTCTGAGTTCGTATATTTTTCGAAA 57.247 30.769 6.47 6.47 43.34 3.46
699 905 2.935849 TGATAGTAAGCAATGTGCCACG 59.064 45.455 0.00 0.00 46.52 4.94
862 1068 5.499139 TGAATTGCGTTTCTCTTGAGTTT 57.501 34.783 0.00 0.00 0.00 2.66
999 1205 0.401356 TTGTGCAGCTCCCAAGATCA 59.599 50.000 0.00 0.00 0.00 2.92
1042 1248 3.443045 CGACCAGCCATGTTGCCC 61.443 66.667 0.00 0.00 0.00 5.36
1088 1294 2.587194 CGGGCTCTCTGAATGGCG 60.587 66.667 0.00 0.00 0.00 5.69
1190 1401 4.464947 GGCTCTTATATCTTTGGTTGCCT 58.535 43.478 0.00 0.00 34.42 4.75
1241 1452 1.635817 TATTGGAGCAGGGTCAGGGC 61.636 60.000 0.56 0.00 0.00 5.19
1378 1593 5.185249 TGCTCCAGAATTAGTTACTCTTCGT 59.815 40.000 0.00 0.00 0.00 3.85
1427 1642 2.418083 GGTGGGCAACATAGGCTGC 61.418 63.158 0.00 0.00 37.86 5.25
1530 1757 2.335712 CCTTGCTCGGCCTGAAACC 61.336 63.158 0.00 0.00 0.00 3.27
1554 1785 1.133792 AGACAGGTTCAGTGTTTGGGG 60.134 52.381 0.00 0.00 0.00 4.96
1619 1855 2.573462 AGTTGCCTGGCTTCTTGAGATA 59.427 45.455 21.03 0.00 0.00 1.98
1625 1861 4.019860 GCCTGGCTTCTTGAGATATATCCA 60.020 45.833 12.43 4.67 0.00 3.41
1643 1879 9.875708 ATATATCCAAATTAGGCAACCAACTAA 57.124 29.630 0.00 0.00 34.07 2.24
1650 1886 0.519961 GGCAACCAACTAACGCGATT 59.480 50.000 15.93 6.10 0.00 3.34
1651 1887 1.465187 GGCAACCAACTAACGCGATTC 60.465 52.381 15.93 0.00 0.00 2.52
1703 1942 2.702478 CCCATTGTCTAGAGATCAGCCA 59.298 50.000 0.00 0.00 0.00 4.75
1719 1958 3.704566 TCAGCCAACCGAATCAGTATACT 59.295 43.478 0.00 0.00 0.00 2.12
1720 1959 4.891168 TCAGCCAACCGAATCAGTATACTA 59.109 41.667 4.74 0.00 0.00 1.82
1721 1960 4.982916 CAGCCAACCGAATCAGTATACTAC 59.017 45.833 4.74 0.00 0.00 2.73
1722 1961 4.894114 AGCCAACCGAATCAGTATACTACT 59.106 41.667 4.74 0.00 40.28 2.57
1723 1962 5.009811 AGCCAACCGAATCAGTATACTACTC 59.990 44.000 4.74 1.89 36.76 2.59
1724 1963 5.770417 CCAACCGAATCAGTATACTACTCC 58.230 45.833 4.74 0.00 36.76 3.85
1725 1964 5.278858 CCAACCGAATCAGTATACTACTCCC 60.279 48.000 4.74 0.00 36.76 4.30
1726 1965 5.321934 ACCGAATCAGTATACTACTCCCT 57.678 43.478 4.74 0.00 36.76 4.20
1727 1966 5.315348 ACCGAATCAGTATACTACTCCCTC 58.685 45.833 4.74 0.00 36.76 4.30
1728 1967 4.701171 CCGAATCAGTATACTACTCCCTCC 59.299 50.000 4.74 0.00 36.76 4.30
1729 1968 4.392445 CGAATCAGTATACTACTCCCTCCG 59.608 50.000 4.74 0.00 36.76 4.63
1730 1969 4.997545 ATCAGTATACTACTCCCTCCGT 57.002 45.455 4.74 0.00 36.76 4.69
1731 1970 4.785346 TCAGTATACTACTCCCTCCGTT 57.215 45.455 4.74 0.00 36.76 4.44
1732 1971 4.712476 TCAGTATACTACTCCCTCCGTTC 58.288 47.826 4.74 0.00 36.76 3.95
1733 1972 3.819902 CAGTATACTACTCCCTCCGTTCC 59.180 52.174 4.74 0.00 36.76 3.62
1734 1973 3.721050 AGTATACTACTCCCTCCGTTCCT 59.279 47.826 2.75 0.00 32.47 3.36
1735 1974 4.910304 AGTATACTACTCCCTCCGTTCCTA 59.090 45.833 2.75 0.00 32.47 2.94
1736 1975 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
1737 1976 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1738 1977 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1739 1978 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1740 1979 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1741 1980 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1742 1981 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1743 1982 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1744 1983 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1745 1984 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1746 1985 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1747 1986 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1748 1987 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1749 1988 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1750 1989 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1772 2011 9.942850 TTTGTAGAGATTTCACTATGAATCACA 57.057 29.630 0.00 0.00 36.11 3.58
1776 2015 8.809159 AGAGATTTCACTATGAATCACATACG 57.191 34.615 0.00 0.00 36.11 3.06
1777 2016 7.869937 AGAGATTTCACTATGAATCACATACGG 59.130 37.037 0.00 0.00 36.11 4.02
1778 2017 7.726216 AGATTTCACTATGAATCACATACGGA 58.274 34.615 0.00 0.00 36.11 4.69
1779 2018 8.370940 AGATTTCACTATGAATCACATACGGAT 58.629 33.333 0.00 0.00 36.11 4.18
1780 2019 7.713764 TTTCACTATGAATCACATACGGATG 57.286 36.000 5.94 5.94 36.11 3.51
1781 2020 6.816136 TTCACTATGAATCACATACGGATGT 58.184 36.000 7.68 7.68 37.89 3.06
1782 2021 7.519032 TCACTATGAATCACATACGGATGTA 57.481 36.000 14.23 2.61 44.82 2.29
1783 2022 8.122472 TCACTATGAATCACATACGGATGTAT 57.878 34.615 14.23 5.54 44.82 2.29
1784 2023 8.585018 TCACTATGAATCACATACGGATGTATT 58.415 33.333 14.23 13.10 44.82 1.89
1785 2024 9.208022 CACTATGAATCACATACGGATGTATTT 57.792 33.333 14.23 9.96 44.82 1.40
1786 2025 9.208022 ACTATGAATCACATACGGATGTATTTG 57.792 33.333 14.23 0.70 44.82 2.32
1787 2026 6.859420 TGAATCACATACGGATGTATTTGG 57.141 37.500 14.23 0.19 44.82 3.28
1788 2027 6.587273 TGAATCACATACGGATGTATTTGGA 58.413 36.000 14.23 6.57 44.82 3.53
1789 2028 7.223584 TGAATCACATACGGATGTATTTGGAT 58.776 34.615 14.23 8.81 44.82 3.41
1790 2029 7.173047 TGAATCACATACGGATGTATTTGGATG 59.827 37.037 14.23 0.00 44.82 3.51
1791 2030 4.754618 TCACATACGGATGTATTTGGATGC 59.245 41.667 14.23 0.00 44.82 3.91
1792 2031 4.514816 CACATACGGATGTATTTGGATGCA 59.485 41.667 14.23 0.00 44.82 3.96
1793 2032 5.181811 CACATACGGATGTATTTGGATGCAT 59.818 40.000 14.23 0.00 44.82 3.96
1794 2033 5.769662 ACATACGGATGTATTTGGATGCATT 59.230 36.000 12.79 0.00 44.77 3.56
1795 2034 6.265196 ACATACGGATGTATTTGGATGCATTT 59.735 34.615 12.79 0.00 44.77 2.32
1796 2035 7.446931 ACATACGGATGTATTTGGATGCATTTA 59.553 33.333 12.79 0.00 44.77 1.40
1797 2036 6.317789 ACGGATGTATTTGGATGCATTTAG 57.682 37.500 0.00 0.00 38.49 1.85
1798 2037 6.061441 ACGGATGTATTTGGATGCATTTAGA 58.939 36.000 0.00 0.00 38.49 2.10
1799 2038 6.205464 ACGGATGTATTTGGATGCATTTAGAG 59.795 38.462 0.00 0.00 38.49 2.43
1800 2039 6.205464 CGGATGTATTTGGATGCATTTAGAGT 59.795 38.462 0.00 0.00 38.49 3.24
1801 2040 7.387673 CGGATGTATTTGGATGCATTTAGAGTA 59.612 37.037 0.00 0.00 38.49 2.59
1802 2041 9.236006 GGATGTATTTGGATGCATTTAGAGTAT 57.764 33.333 0.00 0.00 38.49 2.12
1808 2047 7.912056 TTGGATGCATTTAGAGTATAGATGC 57.088 36.000 12.15 12.15 42.48 3.91
1813 2052 7.054491 TGCATTTAGAGTATAGATGCACTCA 57.946 36.000 16.53 0.00 45.62 3.41
1814 2053 7.674120 TGCATTTAGAGTATAGATGCACTCAT 58.326 34.615 16.53 0.00 45.62 2.90
1815 2054 8.152898 TGCATTTAGAGTATAGATGCACTCATT 58.847 33.333 16.53 0.00 45.62 2.57
1816 2055 8.997323 GCATTTAGAGTATAGATGCACTCATTT 58.003 33.333 13.72 0.00 42.99 2.32
1819 2058 6.857777 AGAGTATAGATGCACTCATTTTGC 57.142 37.500 0.00 0.00 42.99 3.68
1820 2059 6.590068 AGAGTATAGATGCACTCATTTTGCT 58.410 36.000 0.00 0.00 42.99 3.91
1821 2060 6.705381 AGAGTATAGATGCACTCATTTTGCTC 59.295 38.462 0.00 0.00 42.99 4.26
1822 2061 5.762218 AGTATAGATGCACTCATTTTGCTCC 59.238 40.000 0.00 0.00 40.86 4.70
1823 2062 1.741706 AGATGCACTCATTTTGCTCCG 59.258 47.619 0.00 0.00 40.86 4.63
1824 2063 1.470098 GATGCACTCATTTTGCTCCGT 59.530 47.619 0.00 0.00 40.86 4.69
1825 2064 2.177394 TGCACTCATTTTGCTCCGTA 57.823 45.000 0.00 0.00 40.86 4.02
1826 2065 2.710377 TGCACTCATTTTGCTCCGTAT 58.290 42.857 0.00 0.00 40.86 3.06
1827 2066 2.419673 TGCACTCATTTTGCTCCGTATG 59.580 45.455 0.00 0.00 40.86 2.39
1828 2067 2.420022 GCACTCATTTTGCTCCGTATGT 59.580 45.455 0.00 0.00 37.00 2.29
1829 2068 3.728864 GCACTCATTTTGCTCCGTATGTG 60.729 47.826 0.00 0.00 37.00 3.21
1830 2069 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
1831 2070 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
1832 2071 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
1833 2072 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
1834 2073 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
1835 2074 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
1836 2075 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
1837 2076 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
1838 2077 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
1839 2078 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
1840 2079 2.035961 CTCCGTATGTGGTCCATAGTGG 59.964 54.545 0.00 0.00 36.71 4.00
1841 2080 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
1870 2109 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
1871 2110 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
1872 2111 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
1873 2112 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
1874 2113 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
1875 2114 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1876 2115 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1877 2116 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1907 2146 5.051153 GGATCTGGATCTCGTTTAGGTTTC 58.949 45.833 9.96 0.00 37.92 2.78
2267 2512 5.768317 CTCTCGAGATTTGGTTAGATCTCC 58.232 45.833 17.03 0.00 43.34 3.71
2284 2530 6.857848 AGATCTCCTCCCTTTCTTTTTCTTT 58.142 36.000 0.00 0.00 0.00 2.52
2306 2559 4.638304 TCTGTACTTTGTACTTTGCCTCC 58.362 43.478 8.94 0.00 0.00 4.30
2311 2564 5.515797 ACTTTGTACTTTGCCTCCTTTTC 57.484 39.130 0.00 0.00 0.00 2.29
2312 2565 5.201243 ACTTTGTACTTTGCCTCCTTTTCT 58.799 37.500 0.00 0.00 0.00 2.52
2315 2568 3.317993 TGTACTTTGCCTCCTTTTCTTGC 59.682 43.478 0.00 0.00 0.00 4.01
2322 2575 1.537202 CCTCCTTTTCTTGCGGTTCTG 59.463 52.381 0.00 0.00 0.00 3.02
2335 2588 1.402456 CGGTTCTGTTCTACTCCGTGG 60.402 57.143 0.00 0.00 34.38 4.94
2336 2589 1.067071 GGTTCTGTTCTACTCCGTGGG 60.067 57.143 0.00 0.00 0.00 4.61
2337 2590 1.891150 GTTCTGTTCTACTCCGTGGGA 59.109 52.381 0.00 0.00 0.00 4.37
2338 2591 2.496470 GTTCTGTTCTACTCCGTGGGAT 59.504 50.000 0.00 0.00 0.00 3.85
2406 2662 4.223125 TTGCCACCTTGCCCAGCT 62.223 61.111 0.00 0.00 0.00 4.24
2407 2663 4.980702 TGCCACCTTGCCCAGCTG 62.981 66.667 6.78 6.78 0.00 4.24
2408 2664 4.666253 GCCACCTTGCCCAGCTGA 62.666 66.667 17.39 0.00 0.00 4.26
2409 2665 2.357836 CCACCTTGCCCAGCTGAT 59.642 61.111 17.39 0.00 0.00 2.90
2464 2723 0.178998 CAGCTCCATCCATCCCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
2647 2921 4.461781 AGAAATGAGCCTTGAATGAACTGG 59.538 41.667 0.00 0.00 0.00 4.00
2661 2935 6.603201 TGAATGAACTGGACTGAAACTTCTTT 59.397 34.615 0.00 0.00 0.00 2.52
2790 3064 3.701604 GACCGGCTACGACCTGCTG 62.702 68.421 0.00 0.00 44.60 4.41
2811 3085 3.691342 CGGGTCAAGGAGTCGGCA 61.691 66.667 0.00 0.00 0.00 5.69
2856 3130 0.446616 TCATGTCGTCGGAGAACTCG 59.553 55.000 0.00 0.00 39.69 4.18
2913 3187 0.539051 AGGAGTTCCTCATCAAGCCG 59.461 55.000 0.00 0.00 44.77 5.52
2945 3219 4.069232 CGTCTCCCGCCTCTGCAA 62.069 66.667 0.00 0.00 37.32 4.08
3015 3301 2.243264 GCTGCTGATCGGTGCTAGC 61.243 63.158 8.10 8.10 36.72 3.42
3054 3344 2.325101 ATCCTCCCTCCCTCCTCTGC 62.325 65.000 0.00 0.00 0.00 4.26
3076 3366 4.036262 GCTGAGTTCTCACTGACGAGATAT 59.964 45.833 0.00 0.00 41.58 1.63
3077 3367 5.743026 TGAGTTCTCACTGACGAGATATC 57.257 43.478 0.00 0.00 41.58 1.63
3144 3440 9.426837 GAAATCAAAACTGAATGAATTCCATGA 57.573 29.630 2.27 0.00 35.24 3.07
3226 3527 2.359975 AGTAAAGCGGCAGGCCAC 60.360 61.111 5.01 0.00 45.17 5.01
3247 3548 6.572898 GCCACCAATCAATTCAAAGAATCTGA 60.573 38.462 0.00 0.00 0.00 3.27
3258 3559 8.703604 ATTCAAAGAATCTGATTGAGCAATTG 57.296 30.769 7.78 0.00 34.80 2.32
3387 3785 0.618458 TGCGGGCATCCTCTAAAACT 59.382 50.000 0.00 0.00 0.00 2.66
3392 3790 4.120589 CGGGCATCCTCTAAAACTACTTC 58.879 47.826 0.00 0.00 0.00 3.01
3415 3813 8.537049 TTCAATGCAATTCAGGAACTAAATTG 57.463 30.769 0.00 1.39 30.10 2.32
3416 3814 6.591062 TCAATGCAATTCAGGAACTAAATTGC 59.409 34.615 18.42 18.42 42.05 3.56
3417 3815 5.726980 TGCAATTCAGGAACTAAATTGCT 57.273 34.783 23.06 0.00 42.16 3.91
3427 3958 4.645136 GGAACTAAATTGCTTTAGGAGGGG 59.355 45.833 9.52 0.00 45.42 4.79
3429 3960 5.270979 ACTAAATTGCTTTAGGAGGGGTT 57.729 39.130 9.52 0.00 45.42 4.11
3432 3963 2.773993 TTGCTTTAGGAGGGGTTACG 57.226 50.000 0.00 0.00 0.00 3.18
3460 3991 5.190677 GCCAAGCCTAACCTACAATTAAGA 58.809 41.667 0.00 0.00 0.00 2.10
3463 3994 5.632034 AGCCTAACCTACAATTAAGAGGG 57.368 43.478 4.88 0.00 34.41 4.30
3465 3996 4.445879 GCCTAACCTACAATTAAGAGGGGG 60.446 50.000 4.88 5.00 34.41 5.40
3493 4024 2.127708 CCCTAGGTAGGTTTGATGCCT 58.872 52.381 8.29 0.00 42.03 4.75
3501 4032 0.960364 GGTTTGATGCCTCGCTTCCA 60.960 55.000 0.00 0.00 32.74 3.53
3536 4067 5.815222 GGCTTTTGTGGTGACTTTGTTAATT 59.185 36.000 0.00 0.00 0.00 1.40
3539 4070 7.691877 GCTTTTGTGGTGACTTTGTTAATTTTG 59.308 33.333 0.00 0.00 0.00 2.44
3571 4102 0.179032 TTGAGGTTGCGATGTGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
3608 4143 6.103997 TGTACTCCGGTCAAAAGCTAAATAG 58.896 40.000 0.00 0.00 0.00 1.73
3613 4148 4.201822 CCGGTCAAAAGCTAAATAGAGCAC 60.202 45.833 0.00 0.00 45.43 4.40
3629 4164 1.000145 GCACGTACTAGCTCTTTGCC 59.000 55.000 0.00 0.00 44.23 4.52
3630 4165 1.269166 CACGTACTAGCTCTTTGCCG 58.731 55.000 0.00 0.00 44.23 5.69
3631 4166 0.458025 ACGTACTAGCTCTTTGCCGC 60.458 55.000 0.00 0.00 44.23 6.53
3632 4167 1.472276 CGTACTAGCTCTTTGCCGCG 61.472 60.000 0.00 0.00 44.23 6.46
3633 4168 0.179145 GTACTAGCTCTTTGCCGCGA 60.179 55.000 8.23 0.00 44.23 5.87
3634 4169 0.100682 TACTAGCTCTTTGCCGCGAG 59.899 55.000 8.23 0.00 44.23 5.03
3635 4170 1.139734 CTAGCTCTTTGCCGCGAGA 59.860 57.895 8.23 0.23 44.23 4.04
3636 4171 0.458543 CTAGCTCTTTGCCGCGAGAA 60.459 55.000 8.23 0.00 44.23 2.87
3638 4173 0.674895 AGCTCTTTGCCGCGAGAAAT 60.675 50.000 8.23 0.00 44.23 2.17
3639 4174 0.522076 GCTCTTTGCCGCGAGAAATG 60.522 55.000 8.23 1.08 35.15 2.32
3640 4175 0.522076 CTCTTTGCCGCGAGAAATGC 60.522 55.000 8.23 0.58 0.00 3.56
3641 4176 0.955428 TCTTTGCCGCGAGAAATGCT 60.955 50.000 8.23 0.00 0.00 3.79
3642 4177 0.726827 CTTTGCCGCGAGAAATGCTA 59.273 50.000 8.23 0.00 0.00 3.49
3643 4178 0.446222 TTTGCCGCGAGAAATGCTAC 59.554 50.000 8.23 0.00 0.00 3.58
3644 4179 1.366111 TTGCCGCGAGAAATGCTACC 61.366 55.000 8.23 0.00 0.00 3.18
3645 4180 2.534903 GCCGCGAGAAATGCTACCC 61.535 63.158 8.23 0.00 0.00 3.69
3646 4181 1.153449 CCGCGAGAAATGCTACCCA 60.153 57.895 8.23 0.00 0.00 4.51
3647 4182 0.742990 CCGCGAGAAATGCTACCCAA 60.743 55.000 8.23 0.00 0.00 4.12
3648 4183 1.083489 CGCGAGAAATGCTACCCAAA 58.917 50.000 0.00 0.00 0.00 3.28
3649 4184 1.670811 CGCGAGAAATGCTACCCAAAT 59.329 47.619 0.00 0.00 0.00 2.32
3650 4185 2.286418 CGCGAGAAATGCTACCCAAATC 60.286 50.000 0.00 0.00 0.00 2.17
3651 4186 2.682856 GCGAGAAATGCTACCCAAATCA 59.317 45.455 0.00 0.00 0.00 2.57
3652 4187 3.128589 GCGAGAAATGCTACCCAAATCAA 59.871 43.478 0.00 0.00 0.00 2.57
3653 4188 4.380444 GCGAGAAATGCTACCCAAATCAAA 60.380 41.667 0.00 0.00 0.00 2.69
3654 4189 5.679638 GCGAGAAATGCTACCCAAATCAAAT 60.680 40.000 0.00 0.00 0.00 2.32
3655 4190 5.973565 CGAGAAATGCTACCCAAATCAAATC 59.026 40.000 0.00 0.00 0.00 2.17
3656 4191 6.404623 CGAGAAATGCTACCCAAATCAAATCA 60.405 38.462 0.00 0.00 0.00 2.57
3657 4192 6.870769 AGAAATGCTACCCAAATCAAATCAG 58.129 36.000 0.00 0.00 0.00 2.90
3658 4193 5.603170 AATGCTACCCAAATCAAATCAGG 57.397 39.130 0.00 0.00 0.00 3.86
3659 4194 4.046286 TGCTACCCAAATCAAATCAGGT 57.954 40.909 0.00 0.00 0.00 4.00
3660 4195 3.763360 TGCTACCCAAATCAAATCAGGTG 59.237 43.478 0.00 0.00 0.00 4.00
3661 4196 4.016444 GCTACCCAAATCAAATCAGGTGA 58.984 43.478 0.00 0.00 0.00 4.02
3662 4197 4.462483 GCTACCCAAATCAAATCAGGTGAA 59.538 41.667 0.00 0.00 0.00 3.18
3663 4198 5.127682 GCTACCCAAATCAAATCAGGTGAAT 59.872 40.000 0.00 0.00 0.00 2.57
3664 4199 6.321181 GCTACCCAAATCAAATCAGGTGAATA 59.679 38.462 0.00 0.00 0.00 1.75
3665 4200 7.014615 GCTACCCAAATCAAATCAGGTGAATAT 59.985 37.037 0.00 0.00 0.00 1.28
3666 4201 9.573166 CTACCCAAATCAAATCAGGTGAATATA 57.427 33.333 0.00 0.00 0.00 0.86
3672 4207 8.792830 AATCAAATCAGGTGAATATATACCGG 57.207 34.615 0.00 0.00 41.85 5.28
3673 4208 7.547697 TCAAATCAGGTGAATATATACCGGA 57.452 36.000 9.46 9.18 43.50 5.14
3675 4210 9.262240 TCAAATCAGGTGAATATATACCGGATA 57.738 33.333 9.46 1.75 46.48 2.59
3676 4211 9.884636 CAAATCAGGTGAATATATACCGGATAA 57.115 33.333 9.46 0.00 46.48 1.75
3680 4215 9.262240 TCAGGTGAATATATACCGGATAAATGA 57.738 33.333 9.46 0.00 41.85 2.57
3681 4216 9.884636 CAGGTGAATATATACCGGATAAATGAA 57.115 33.333 9.46 0.00 41.85 2.57
3682 4217 9.886132 AGGTGAATATATACCGGATAAATGAAC 57.114 33.333 9.46 0.00 41.85 3.18
3683 4218 9.661563 GGTGAATATATACCGGATAAATGAACA 57.338 33.333 9.46 0.00 0.00 3.18
3690 4225 9.847224 ATATACCGGATAAATGAACAGAGTTTT 57.153 29.630 9.46 0.00 0.00 2.43
3691 4226 6.496338 ACCGGATAAATGAACAGAGTTTTC 57.504 37.500 9.46 0.00 0.00 2.29
3692 4227 6.238648 ACCGGATAAATGAACAGAGTTTTCT 58.761 36.000 9.46 0.00 0.00 2.52
3693 4228 7.391620 ACCGGATAAATGAACAGAGTTTTCTA 58.608 34.615 9.46 0.00 30.73 2.10
3694 4229 8.047310 ACCGGATAAATGAACAGAGTTTTCTAT 58.953 33.333 9.46 0.00 30.73 1.98
3695 4230 9.542462 CCGGATAAATGAACAGAGTTTTCTATA 57.458 33.333 0.00 0.00 30.73 1.31
3706 4241 9.717942 AACAGAGTTTTCTATAGATATCATGGC 57.282 33.333 2.58 0.00 30.73 4.40
3707 4242 9.099071 ACAGAGTTTTCTATAGATATCATGGCT 57.901 33.333 2.58 0.00 30.73 4.75
3708 4243 9.941325 CAGAGTTTTCTATAGATATCATGGCTT 57.059 33.333 2.58 0.00 30.73 4.35
3709 4244 9.941325 AGAGTTTTCTATAGATATCATGGCTTG 57.059 33.333 2.58 0.00 0.00 4.01
3710 4245 9.717942 GAGTTTTCTATAGATATCATGGCTTGT 57.282 33.333 2.58 0.00 0.00 3.16
3713 4248 9.851686 TTTTCTATAGATATCATGGCTTGTTGT 57.148 29.630 2.58 0.00 0.00 3.32
3714 4249 8.837788 TTCTATAGATATCATGGCTTGTTGTG 57.162 34.615 2.58 0.00 0.00 3.33
3715 4250 7.966812 TCTATAGATATCATGGCTTGTTGTGT 58.033 34.615 5.32 0.00 0.00 3.72
3716 4251 9.088987 TCTATAGATATCATGGCTTGTTGTGTA 57.911 33.333 5.32 0.00 0.00 2.90
3717 4252 7.969536 ATAGATATCATGGCTTGTTGTGTAC 57.030 36.000 5.32 0.00 0.00 2.90
3718 4253 5.744171 AGATATCATGGCTTGTTGTGTACA 58.256 37.500 5.32 0.00 34.12 2.90
3719 4254 5.586243 AGATATCATGGCTTGTTGTGTACAC 59.414 40.000 19.36 19.36 36.21 2.90
3720 4255 2.924421 TCATGGCTTGTTGTGTACACA 58.076 42.857 24.62 24.62 36.21 3.72
3734 4269 6.804770 TGTGTACACAAACAAAGTAACAGT 57.195 33.333 26.07 0.00 38.56 3.55
3735 4270 6.604012 TGTGTACACAAACAAAGTAACAGTG 58.396 36.000 26.07 0.00 38.56 3.66
3736 4271 6.427242 TGTGTACACAAACAAAGTAACAGTGA 59.573 34.615 26.07 0.00 38.56 3.41
3737 4272 7.041303 TGTGTACACAAACAAAGTAACAGTGAA 60.041 33.333 26.07 0.00 38.56 3.18
3738 4273 7.966204 GTGTACACAAACAAAGTAACAGTGAAT 59.034 33.333 21.14 0.00 0.00 2.57
3739 4274 9.163899 TGTACACAAACAAAGTAACAGTGAATA 57.836 29.630 0.00 0.00 0.00 1.75
3742 4277 8.682710 ACACAAACAAAGTAACAGTGAATATGT 58.317 29.630 0.00 0.00 0.00 2.29
3748 4283 9.216117 ACAAAGTAACAGTGAATATGTACTTCC 57.784 33.333 0.00 0.00 30.84 3.46
3749 4284 9.436957 CAAAGTAACAGTGAATATGTACTTCCT 57.563 33.333 0.00 0.00 30.84 3.36
3750 4285 9.654663 AAAGTAACAGTGAATATGTACTTCCTC 57.345 33.333 0.00 0.00 30.84 3.71
3751 4286 7.783042 AGTAACAGTGAATATGTACTTCCTCC 58.217 38.462 0.00 0.00 0.00 4.30
3752 4287 5.263968 ACAGTGAATATGTACTTCCTCCG 57.736 43.478 0.00 0.00 0.00 4.63
3753 4288 4.099573 ACAGTGAATATGTACTTCCTCCGG 59.900 45.833 0.00 0.00 0.00 5.14
3754 4289 4.099573 CAGTGAATATGTACTTCCTCCGGT 59.900 45.833 0.00 0.00 0.00 5.28
3755 4290 4.341520 AGTGAATATGTACTTCCTCCGGTC 59.658 45.833 0.00 0.00 0.00 4.79
3756 4291 3.640029 TGAATATGTACTTCCTCCGGTCC 59.360 47.826 0.00 0.00 0.00 4.46
3757 4292 3.614568 ATATGTACTTCCTCCGGTCCT 57.385 47.619 0.00 0.00 0.00 3.85
3758 4293 2.249309 ATGTACTTCCTCCGGTCCTT 57.751 50.000 0.00 0.00 0.00 3.36
3759 4294 1.553706 TGTACTTCCTCCGGTCCTTC 58.446 55.000 0.00 0.00 0.00 3.46
3760 4295 1.076677 TGTACTTCCTCCGGTCCTTCT 59.923 52.381 0.00 0.00 0.00 2.85
3761 4296 2.177734 GTACTTCCTCCGGTCCTTCTT 58.822 52.381 0.00 0.00 0.00 2.52
3762 4297 2.617840 ACTTCCTCCGGTCCTTCTTA 57.382 50.000 0.00 0.00 0.00 2.10
3763 4298 2.177734 ACTTCCTCCGGTCCTTCTTAC 58.822 52.381 0.00 0.00 0.00 2.34
3764 4299 2.225318 ACTTCCTCCGGTCCTTCTTACT 60.225 50.000 0.00 0.00 0.00 2.24
3765 4300 2.617840 TCCTCCGGTCCTTCTTACTT 57.382 50.000 0.00 0.00 0.00 2.24
3766 4301 2.898662 TCCTCCGGTCCTTCTTACTTT 58.101 47.619 0.00 0.00 0.00 2.66
3767 4302 2.830321 TCCTCCGGTCCTTCTTACTTTC 59.170 50.000 0.00 0.00 0.00 2.62
3768 4303 2.416972 CCTCCGGTCCTTCTTACTTTCG 60.417 54.545 0.00 0.00 0.00 3.46
3769 4304 1.067354 TCCGGTCCTTCTTACTTTCGC 60.067 52.381 0.00 0.00 0.00 4.70
3770 4305 1.337447 CCGGTCCTTCTTACTTTCGCA 60.337 52.381 0.00 0.00 0.00 5.10
3771 4306 2.618053 CGGTCCTTCTTACTTTCGCAT 58.382 47.619 0.00 0.00 0.00 4.73
3772 4307 3.429822 CCGGTCCTTCTTACTTTCGCATA 60.430 47.826 0.00 0.00 0.00 3.14
3773 4308 4.369182 CGGTCCTTCTTACTTTCGCATAT 58.631 43.478 0.00 0.00 0.00 1.78
3774 4309 5.508489 CCGGTCCTTCTTACTTTCGCATATA 60.508 44.000 0.00 0.00 0.00 0.86
3775 4310 5.981315 CGGTCCTTCTTACTTTCGCATATAA 59.019 40.000 0.00 0.00 0.00 0.98
3776 4311 6.144080 CGGTCCTTCTTACTTTCGCATATAAG 59.856 42.308 0.00 0.00 0.00 1.73
3777 4312 6.985059 GGTCCTTCTTACTTTCGCATATAAGT 59.015 38.462 0.00 0.00 38.16 2.24
3778 4313 7.494952 GGTCCTTCTTACTTTCGCATATAAGTT 59.505 37.037 0.00 0.00 36.16 2.66
3779 4314 8.880750 GTCCTTCTTACTTTCGCATATAAGTTT 58.119 33.333 0.00 0.00 36.16 2.66
3780 4315 9.444600 TCCTTCTTACTTTCGCATATAAGTTTT 57.555 29.630 0.00 0.00 36.16 2.43
3781 4316 9.490663 CCTTCTTACTTTCGCATATAAGTTTTG 57.509 33.333 0.00 0.00 36.16 2.44
3784 4319 9.431887 TCTTACTTTCGCATATAAGTTTTGTCT 57.568 29.630 0.00 0.00 36.16 3.41
3785 4320 9.478019 CTTACTTTCGCATATAAGTTTTGTCTG 57.522 33.333 0.00 0.00 36.16 3.51
3786 4321 7.667043 ACTTTCGCATATAAGTTTTGTCTGA 57.333 32.000 0.00 0.00 30.72 3.27
3787 4322 8.094798 ACTTTCGCATATAAGTTTTGTCTGAA 57.905 30.769 0.00 0.00 30.72 3.02
3788 4323 8.230486 ACTTTCGCATATAAGTTTTGTCTGAAG 58.770 33.333 0.00 0.00 30.72 3.02
3789 4324 7.667043 TTCGCATATAAGTTTTGTCTGAAGT 57.333 32.000 0.00 0.00 0.00 3.01
3790 4325 8.766000 TTCGCATATAAGTTTTGTCTGAAGTA 57.234 30.769 0.00 0.00 0.00 2.24
3791 4326 8.766000 TCGCATATAAGTTTTGTCTGAAGTAA 57.234 30.769 0.00 0.00 0.00 2.24
3792 4327 9.210329 TCGCATATAAGTTTTGTCTGAAGTAAA 57.790 29.630 0.00 0.00 0.00 2.01
3793 4328 9.478019 CGCATATAAGTTTTGTCTGAAGTAAAG 57.522 33.333 0.00 0.00 0.00 1.85
3801 4336 9.342308 AGTTTTGTCTGAAGTAAAGATTGATCA 57.658 29.630 0.00 0.00 0.00 2.92
3802 4337 9.950680 GTTTTGTCTGAAGTAAAGATTGATCAA 57.049 29.630 11.26 11.26 0.00 2.57
3859 4394 8.839343 ACGAAATCAATATCATTAGATGCAACA 58.161 29.630 0.00 0.00 35.67 3.33
3860 4395 9.836076 CGAAATCAATATCATTAGATGCAACAT 57.164 29.630 0.00 0.00 35.67 2.71
3877 4413 8.618702 ATGCAACATTGTTTGGATTTCAATAA 57.381 26.923 0.00 0.00 34.13 1.40
3907 4443 9.445786 TGATCAAATTTTACGAAGTTTGACTTC 57.554 29.630 10.60 10.09 46.99 3.01
3935 4471 9.651718 GACAAATCTTATATGCGGAGTAAAAAG 57.348 33.333 0.00 0.00 0.00 2.27
3947 4483 5.642491 GCGGAGTAAAAAGGACAGTAAATCT 59.358 40.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 205 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
233 234 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
234 235 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
235 236 9.733219 GAGCGTTTAGATCACTACTTTAGTAAT 57.267 33.333 0.00 0.00 37.23 1.89
236 237 8.954350 AGAGCGTTTAGATCACTACTTTAGTAA 58.046 33.333 0.00 0.00 37.82 2.24
237 238 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
238 239 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
239 240 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
251 252 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
252 253 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
253 254 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
254 255 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
255 256 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
256 257 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
257 258 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
258 259 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
259 260 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
260 261 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
261 262 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
262 263 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
263 264 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
264 265 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
265 266 7.685155 GCATTGTACTCCCTCCGTAAACTAATA 60.685 40.741 0.00 0.00 0.00 0.98
266 267 6.579865 CATTGTACTCCCTCCGTAAACTAAT 58.420 40.000 0.00 0.00 0.00 1.73
267 268 5.625197 GCATTGTACTCCCTCCGTAAACTAA 60.625 44.000 0.00 0.00 0.00 2.24
268 269 4.142093 GCATTGTACTCCCTCCGTAAACTA 60.142 45.833 0.00 0.00 0.00 2.24
269 270 3.369157 GCATTGTACTCCCTCCGTAAACT 60.369 47.826 0.00 0.00 0.00 2.66
270 271 2.934553 GCATTGTACTCCCTCCGTAAAC 59.065 50.000 0.00 0.00 0.00 2.01
271 272 2.568062 TGCATTGTACTCCCTCCGTAAA 59.432 45.455 0.00 0.00 0.00 2.01
272 273 2.093869 GTGCATTGTACTCCCTCCGTAA 60.094 50.000 0.00 0.00 0.00 3.18
273 274 1.479323 GTGCATTGTACTCCCTCCGTA 59.521 52.381 0.00 0.00 0.00 4.02
274 275 0.249398 GTGCATTGTACTCCCTCCGT 59.751 55.000 0.00 0.00 0.00 4.69
275 276 0.537188 AGTGCATTGTACTCCCTCCG 59.463 55.000 1.11 0.00 0.00 4.63
276 277 1.834263 AGAGTGCATTGTACTCCCTCC 59.166 52.381 25.38 6.81 44.35 4.30
277 278 2.497675 TCAGAGTGCATTGTACTCCCTC 59.502 50.000 25.38 7.36 44.35 4.30
278 279 2.540383 TCAGAGTGCATTGTACTCCCT 58.460 47.619 25.38 10.24 44.35 4.20
279 280 3.550437 ATCAGAGTGCATTGTACTCCC 57.450 47.619 25.38 8.09 44.35 4.30
280 281 4.507710 TCAATCAGAGTGCATTGTACTCC 58.492 43.478 25.38 11.95 44.35 3.85
281 282 6.674694 AATCAATCAGAGTGCATTGTACTC 57.325 37.500 22.74 22.74 43.77 2.59
282 283 7.826252 AGTTAATCAATCAGAGTGCATTGTACT 59.174 33.333 7.15 7.15 32.67 2.73
283 284 7.978982 AGTTAATCAATCAGAGTGCATTGTAC 58.021 34.615 0.00 0.00 32.67 2.90
284 285 8.043113 AGAGTTAATCAATCAGAGTGCATTGTA 58.957 33.333 0.00 0.00 32.67 2.41
285 286 6.883217 AGAGTTAATCAATCAGAGTGCATTGT 59.117 34.615 0.00 0.00 32.67 2.71
286 287 7.065443 TGAGAGTTAATCAATCAGAGTGCATTG 59.935 37.037 0.00 0.00 0.00 2.82
295 296 6.148315 TGCACAACTGAGAGTTAATCAATCAG 59.852 38.462 0.00 0.00 42.43 2.90
374 375 2.749110 CTACCATGATCCGCCGACCG 62.749 65.000 0.00 0.00 0.00 4.79
468 641 3.318839 ACAGTTAACCACAGCACTACGTA 59.681 43.478 0.88 0.00 0.00 3.57
594 767 0.892358 ACACTGCCTGCATGACAAGG 60.892 55.000 0.00 0.48 0.00 3.61
636 809 3.860754 GCACCTATTGTGGGTTTGCTTTC 60.861 47.826 0.00 0.00 45.55 2.62
639 812 1.256812 GCACCTATTGTGGGTTTGCT 58.743 50.000 0.00 0.00 45.55 3.91
699 905 6.604735 AAACTGATGCAATATACCGAGTTC 57.395 37.500 0.00 0.00 0.00 3.01
862 1068 8.514594 CATCAAAAGAACAGAAGCAATAAGGTA 58.485 33.333 0.00 0.00 0.00 3.08
999 1205 1.215423 GGGGGATTGGTACTGCTCATT 59.785 52.381 0.00 0.00 0.00 2.57
1088 1294 0.908198 AGTTCCTCTGCATCTGGACC 59.092 55.000 2.49 0.00 0.00 4.46
1128 1335 0.390472 GTCTGACCTGAAGAAGCCCG 60.390 60.000 0.00 0.00 0.00 6.13
1190 1401 4.965892 GCGTGCAATAATTCGCGA 57.034 50.000 3.71 3.71 39.35 5.87
1306 1520 3.076621 ACGAACTGTGCACATTCATCAT 58.923 40.909 26.83 9.48 0.00 2.45
1307 1521 2.223845 CACGAACTGTGCACATTCATCA 59.776 45.455 26.83 6.74 42.70 3.07
1308 1522 2.843077 CACGAACTGTGCACATTCATC 58.157 47.619 26.83 19.29 42.70 2.92
1309 1523 2.975410 CACGAACTGTGCACATTCAT 57.025 45.000 26.83 17.58 42.70 2.57
1378 1593 3.306225 GGTGTACTAAACCATCCACGTCA 60.306 47.826 0.00 0.00 37.65 4.35
1427 1642 0.466922 AGGTGTATCTACCCCGACCG 60.467 60.000 0.00 0.00 41.83 4.79
1530 1757 2.225068 AACACTGAACCTGTCTGACG 57.775 50.000 2.98 0.00 0.00 4.35
1534 1761 1.133792 CCCCAAACACTGAACCTGTCT 60.134 52.381 0.00 0.00 0.00 3.41
1554 1785 2.715737 TCGGCCAACAAAAACTATGC 57.284 45.000 2.24 0.00 0.00 3.14
1605 1841 9.730705 CTAATTTGGATATATCTCAAGAAGCCA 57.269 33.333 12.42 0.00 0.00 4.75
1610 1846 9.507329 GTTGCCTAATTTGGATATATCTCAAGA 57.493 33.333 10.34 6.87 0.00 3.02
1619 1855 7.201785 CGTTAGTTGGTTGCCTAATTTGGATAT 60.202 37.037 10.34 0.00 0.00 1.63
1625 1861 3.365565 CGCGTTAGTTGGTTGCCTAATTT 60.366 43.478 0.00 0.00 0.00 1.82
1643 1879 2.791560 CTCTCATGATTTCGAATCGCGT 59.208 45.455 5.77 0.00 41.80 6.01
1650 1886 4.192429 TGCTTCACTCTCATGATTTCGA 57.808 40.909 0.00 0.00 0.00 3.71
1651 1887 4.727162 GCTTGCTTCACTCTCATGATTTCG 60.727 45.833 0.00 0.00 0.00 3.46
1719 1958 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1720 1959 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1721 1960 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1722 1961 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1723 1962 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1724 1963 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1725 1964 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1746 1985 9.942850 TGTGATTCATAGTGAAATCTCTACAAA 57.057 29.630 0.00 0.00 40.12 2.83
1750 1989 9.899226 CGTATGTGATTCATAGTGAAATCTCTA 57.101 33.333 0.00 0.00 40.12 2.43
1751 1990 7.869937 CCGTATGTGATTCATAGTGAAATCTCT 59.130 37.037 0.00 0.00 40.12 3.10
1752 1991 7.867909 TCCGTATGTGATTCATAGTGAAATCTC 59.132 37.037 0.00 0.00 40.12 2.75
1753 1992 7.726216 TCCGTATGTGATTCATAGTGAAATCT 58.274 34.615 0.00 0.00 40.12 2.40
1754 1993 7.946655 TCCGTATGTGATTCATAGTGAAATC 57.053 36.000 0.00 0.00 40.12 2.17
1755 1994 7.933577 ACATCCGTATGTGATTCATAGTGAAAT 59.066 33.333 0.00 0.00 44.79 2.17
1756 1995 7.272244 ACATCCGTATGTGATTCATAGTGAAA 58.728 34.615 0.00 0.00 44.79 2.69
1757 1996 6.816136 ACATCCGTATGTGATTCATAGTGAA 58.184 36.000 0.00 0.00 44.79 3.18
1758 1997 6.405278 ACATCCGTATGTGATTCATAGTGA 57.595 37.500 0.00 0.00 44.79 3.41
1759 1998 8.763049 AATACATCCGTATGTGATTCATAGTG 57.237 34.615 3.56 0.00 45.99 2.74
1760 1999 9.208022 CAAATACATCCGTATGTGATTCATAGT 57.792 33.333 3.56 0.00 43.51 2.12
1761 2000 8.659491 CCAAATACATCCGTATGTGATTCATAG 58.341 37.037 3.56 0.00 43.51 2.23
1762 2001 8.371699 TCCAAATACATCCGTATGTGATTCATA 58.628 33.333 3.56 0.00 43.51 2.15
1763 2002 7.223584 TCCAAATACATCCGTATGTGATTCAT 58.776 34.615 3.56 0.00 43.51 2.57
1764 2003 6.587273 TCCAAATACATCCGTATGTGATTCA 58.413 36.000 3.56 0.00 43.51 2.57
1765 2004 7.521529 CATCCAAATACATCCGTATGTGATTC 58.478 38.462 3.56 0.00 43.51 2.52
1766 2005 6.072508 GCATCCAAATACATCCGTATGTGATT 60.073 38.462 3.56 0.00 43.51 2.57
1767 2006 5.412594 GCATCCAAATACATCCGTATGTGAT 59.587 40.000 3.56 0.00 43.51 3.06
1768 2007 4.754618 GCATCCAAATACATCCGTATGTGA 59.245 41.667 3.56 0.00 43.51 3.58
1769 2008 4.514816 TGCATCCAAATACATCCGTATGTG 59.485 41.667 3.56 0.00 45.99 3.21
1771 2010 5.885230 ATGCATCCAAATACATCCGTATG 57.115 39.130 0.00 0.00 38.37 2.39
1772 2011 6.899393 AAATGCATCCAAATACATCCGTAT 57.101 33.333 0.00 0.00 40.15 3.06
1773 2012 7.220740 TCTAAATGCATCCAAATACATCCGTA 58.779 34.615 0.00 0.00 0.00 4.02
1774 2013 6.061441 TCTAAATGCATCCAAATACATCCGT 58.939 36.000 0.00 0.00 0.00 4.69
1775 2014 6.205464 ACTCTAAATGCATCCAAATACATCCG 59.795 38.462 0.00 0.00 0.00 4.18
1776 2015 7.516198 ACTCTAAATGCATCCAAATACATCC 57.484 36.000 0.00 0.00 0.00 3.51
1782 2021 8.954350 GCATCTATACTCTAAATGCATCCAAAT 58.046 33.333 0.00 0.00 41.75 2.32
1783 2022 7.938490 TGCATCTATACTCTAAATGCATCCAAA 59.062 33.333 0.00 0.00 45.55 3.28
1784 2023 7.452562 TGCATCTATACTCTAAATGCATCCAA 58.547 34.615 0.00 0.00 45.55 3.53
1785 2024 7.008021 TGCATCTATACTCTAAATGCATCCA 57.992 36.000 0.00 0.00 45.55 3.41
1790 2029 8.545229 AATGAGTGCATCTATACTCTAAATGC 57.455 34.615 0.00 0.00 42.86 3.56
1793 2032 8.830580 GCAAAATGAGTGCATCTATACTCTAAA 58.169 33.333 0.00 0.00 42.86 1.85
1794 2033 8.206867 AGCAAAATGAGTGCATCTATACTCTAA 58.793 33.333 0.00 0.00 44.74 2.10
1795 2034 7.730084 AGCAAAATGAGTGCATCTATACTCTA 58.270 34.615 0.00 0.00 44.74 2.43
1796 2035 6.590068 AGCAAAATGAGTGCATCTATACTCT 58.410 36.000 0.00 0.00 44.74 3.24
1797 2036 6.073331 GGAGCAAAATGAGTGCATCTATACTC 60.073 42.308 0.00 0.00 44.74 2.59
1798 2037 5.762218 GGAGCAAAATGAGTGCATCTATACT 59.238 40.000 0.00 0.00 44.74 2.12
1799 2038 5.333645 CGGAGCAAAATGAGTGCATCTATAC 60.334 44.000 0.00 0.00 44.74 1.47
1800 2039 4.751600 CGGAGCAAAATGAGTGCATCTATA 59.248 41.667 0.00 0.00 44.74 1.31
1801 2040 3.562973 CGGAGCAAAATGAGTGCATCTAT 59.437 43.478 0.00 0.00 44.74 1.98
1802 2041 2.938451 CGGAGCAAAATGAGTGCATCTA 59.062 45.455 0.00 0.00 44.74 1.98
1803 2042 1.741706 CGGAGCAAAATGAGTGCATCT 59.258 47.619 0.00 0.00 44.74 2.90
1804 2043 1.470098 ACGGAGCAAAATGAGTGCATC 59.530 47.619 0.00 0.00 44.74 3.91
1805 2044 1.538047 ACGGAGCAAAATGAGTGCAT 58.462 45.000 0.00 0.00 44.74 3.96
1806 2045 2.177394 TACGGAGCAAAATGAGTGCA 57.823 45.000 0.00 0.00 44.74 4.57
1807 2046 2.420022 ACATACGGAGCAAAATGAGTGC 59.580 45.455 0.00 0.00 42.55 4.40
1808 2047 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
1809 2048 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
1810 2049 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
1811 2050 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
1812 2051 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
1813 2052 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
1814 2053 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
1815 2054 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
1816 2055 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
1817 2056 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
1818 2057 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
1819 2058 2.035961 CCACTATGGACCACATACGGAG 59.964 54.545 0.00 0.00 40.96 4.63
1820 2059 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
1821 2060 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
1844 2083 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
1845 2084 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
1846 2085 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
1847 2086 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
1848 2087 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
1849 2088 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1850 2089 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1851 2090 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1852 2091 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1853 2092 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1854 2093 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1855 2094 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1856 2095 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1857 2096 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1858 2097 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1859 2098 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1860 2099 3.959449 GACTACTCCCTCCGTTCCTAAAT 59.041 47.826 0.00 0.00 0.00 1.40
1861 2100 3.245371 TGACTACTCCCTCCGTTCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
1862 2101 2.309755 TGACTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
1863 2102 1.918262 TGACTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
1864 2103 0.702902 TGACTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
1865 2104 1.104630 CTGACTACTCCCTCCGTTCC 58.895 60.000 0.00 0.00 0.00 3.62
1866 2105 1.104630 CCTGACTACTCCCTCCGTTC 58.895 60.000 0.00 0.00 0.00 3.95
1867 2106 0.702902 TCCTGACTACTCCCTCCGTT 59.297 55.000 0.00 0.00 0.00 4.44
1868 2107 0.927767 ATCCTGACTACTCCCTCCGT 59.072 55.000 0.00 0.00 0.00 4.69
1869 2108 1.144093 AGATCCTGACTACTCCCTCCG 59.856 57.143 0.00 0.00 0.00 4.63
1870 2109 2.593026 CAGATCCTGACTACTCCCTCC 58.407 57.143 0.00 0.00 32.44 4.30
1871 2110 2.175931 TCCAGATCCTGACTACTCCCTC 59.824 54.545 0.00 0.00 32.44 4.30
1872 2111 2.218673 TCCAGATCCTGACTACTCCCT 58.781 52.381 0.00 0.00 32.44 4.20
1873 2112 2.757894 TCCAGATCCTGACTACTCCC 57.242 55.000 0.00 0.00 32.44 4.30
1874 2113 4.079253 GAGATCCAGATCCTGACTACTCC 58.921 52.174 4.01 0.00 38.58 3.85
1875 2114 3.751175 CGAGATCCAGATCCTGACTACTC 59.249 52.174 4.01 0.00 38.58 2.59
1876 2115 3.137544 ACGAGATCCAGATCCTGACTACT 59.862 47.826 4.01 0.00 38.58 2.57
1877 2116 3.482436 ACGAGATCCAGATCCTGACTAC 58.518 50.000 4.01 0.00 38.58 2.73
1907 2146 3.281341 TCGCTTGGTTTTGTTATGCTG 57.719 42.857 0.00 0.00 0.00 4.41
2146 2386 2.366435 GATTCCCGGGTCCCCAGA 60.366 66.667 22.86 0.00 35.37 3.86
2249 2494 4.904853 AGGGAGGAGATCTAACCAAATCTC 59.095 45.833 0.00 4.20 44.69 2.75
2267 2512 7.809546 AGTACAGAAAGAAAAAGAAAGGGAG 57.190 36.000 0.00 0.00 0.00 4.30
2284 2530 4.347000 AGGAGGCAAAGTACAAAGTACAGA 59.653 41.667 9.68 0.00 0.00 3.41
2306 2559 3.971032 AGAACAGAACCGCAAGAAAAG 57.029 42.857 0.00 0.00 43.02 2.27
2311 2564 2.338500 GGAGTAGAACAGAACCGCAAG 58.662 52.381 0.00 0.00 0.00 4.01
2312 2565 1.336517 CGGAGTAGAACAGAACCGCAA 60.337 52.381 0.00 0.00 34.36 4.85
2315 2568 1.402456 CCACGGAGTAGAACAGAACCG 60.402 57.143 0.00 0.00 41.61 4.44
2322 2575 1.136500 GTCCATCCCACGGAGTAGAAC 59.864 57.143 0.00 0.00 41.61 3.01
2337 2590 4.853142 TAGCGAGGGGCCGTCCAT 62.853 66.667 19.84 11.24 45.17 3.41
2406 2662 7.446769 TGGTTGACAAGTAAGTAGCTTAATCA 58.553 34.615 0.00 0.00 0.00 2.57
2407 2663 7.900782 TGGTTGACAAGTAAGTAGCTTAATC 57.099 36.000 0.00 0.00 0.00 1.75
2408 2664 8.685838 TTTGGTTGACAAGTAAGTAGCTTAAT 57.314 30.769 0.00 0.00 40.82 1.40
2409 2665 8.685838 ATTTGGTTGACAAGTAAGTAGCTTAA 57.314 30.769 0.00 0.00 40.82 1.85
2415 2671 7.012894 CCTGTTGATTTGGTTGACAAGTAAGTA 59.987 37.037 0.00 0.00 40.82 2.24
2464 2723 4.479993 ATCGGGCAGAGGCAGCAC 62.480 66.667 0.00 0.00 43.71 4.40
2588 2852 2.621998 CAGTCATGGAATGGGATGAAGC 59.378 50.000 0.00 0.00 46.73 3.86
2590 2854 4.589647 TTCAGTCATGGAATGGGATGAA 57.410 40.909 0.00 0.00 46.73 2.57
2647 2921 7.915397 TGCACAAATTAGAAAGAAGTTTCAGTC 59.085 33.333 1.03 0.00 44.08 3.51
2661 2935 2.729360 CGTCGTCACTGCACAAATTAGA 59.271 45.455 0.00 0.00 0.00 2.10
2790 3064 1.446272 CGACTCCTTGACCCGCTTC 60.446 63.158 0.00 0.00 0.00 3.86
2859 3133 4.530857 CACCGGCGGATCCTGGAC 62.531 72.222 35.78 2.16 34.18 4.02
3015 3301 2.627515 TGGATTAGCAAGCTAGCAGG 57.372 50.000 18.83 9.46 36.85 4.85
3110 3400 4.870123 TCAGTTTTGATTTCACCATGGG 57.130 40.909 18.09 5.22 0.00 4.00
3144 3440 2.871096 ACATACATTCCGTGGGTTGT 57.129 45.000 1.34 1.34 0.00 3.32
3226 3527 9.302345 CTCAATCAGATTCTTTGAATTGATTGG 57.698 33.333 28.15 22.41 45.82 3.16
3247 3548 5.231702 ACCAATTCCAACAATTGCTCAAT 57.768 34.783 5.05 0.00 36.56 2.57
3340 3728 5.885449 AAAAAGGTGGTTTTGGATGATGA 57.115 34.783 0.00 0.00 38.43 2.92
3377 3775 8.514594 TGAATTGCATTGAAGTAGTTTTAGAGG 58.485 33.333 0.00 0.00 0.00 3.69
3387 3785 7.994425 TTAGTTCCTGAATTGCATTGAAGTA 57.006 32.000 0.00 0.00 0.00 2.24
3415 3813 0.540454 AGCGTAACCCCTCCTAAAGC 59.460 55.000 0.00 0.00 0.00 3.51
3416 3814 3.802675 GCATAGCGTAACCCCTCCTAAAG 60.803 52.174 0.00 0.00 0.00 1.85
3417 3815 2.103601 GCATAGCGTAACCCCTCCTAAA 59.896 50.000 0.00 0.00 0.00 1.85
3427 3958 2.234300 TAGGCTTGGCATAGCGTAAC 57.766 50.000 16.21 5.23 42.15 2.50
3429 3960 1.202604 GGTTAGGCTTGGCATAGCGTA 60.203 52.381 15.22 15.22 42.15 4.42
3432 3963 2.158813 TGTAGGTTAGGCTTGGCATAGC 60.159 50.000 11.60 11.60 40.48 2.97
3501 4032 2.292267 CACAAAAGCCTCGCTATGGAT 58.708 47.619 4.88 0.00 38.25 3.41
3571 4102 7.455891 TGACCGGAGTACAGATATAGACATAA 58.544 38.462 9.46 0.00 0.00 1.90
3613 4148 1.472276 CGCGGCAAAGAGCTAGTACG 61.472 60.000 0.00 0.00 44.79 3.67
3629 4164 1.083489 TTTGGGTAGCATTTCTCGCG 58.917 50.000 0.00 0.00 0.00 5.87
3630 4165 2.682856 TGATTTGGGTAGCATTTCTCGC 59.317 45.455 0.00 0.00 0.00 5.03
3631 4166 4.963276 TTGATTTGGGTAGCATTTCTCG 57.037 40.909 0.00 0.00 0.00 4.04
3632 4167 6.866480 TGATTTGATTTGGGTAGCATTTCTC 58.134 36.000 0.00 0.00 0.00 2.87
3633 4168 6.127253 CCTGATTTGATTTGGGTAGCATTTCT 60.127 38.462 0.00 0.00 0.00 2.52
3634 4169 6.044682 CCTGATTTGATTTGGGTAGCATTTC 58.955 40.000 0.00 0.00 0.00 2.17
3635 4170 5.484998 ACCTGATTTGATTTGGGTAGCATTT 59.515 36.000 0.00 0.00 0.00 2.32
3636 4171 5.025453 ACCTGATTTGATTTGGGTAGCATT 58.975 37.500 0.00 0.00 0.00 3.56
3638 4173 3.763360 CACCTGATTTGATTTGGGTAGCA 59.237 43.478 0.00 0.00 0.00 3.49
3639 4174 4.016444 TCACCTGATTTGATTTGGGTAGC 58.984 43.478 0.00 0.00 0.00 3.58
3640 4175 6.780457 ATTCACCTGATTTGATTTGGGTAG 57.220 37.500 0.00 0.00 0.00 3.18
3646 4181 9.231297 CCGGTATATATTCACCTGATTTGATTT 57.769 33.333 0.00 0.00 32.29 2.17
3647 4182 8.602424 TCCGGTATATATTCACCTGATTTGATT 58.398 33.333 0.00 0.00 32.29 2.57
3648 4183 8.146053 TCCGGTATATATTCACCTGATTTGAT 57.854 34.615 0.00 0.00 32.29 2.57
3649 4184 7.547697 TCCGGTATATATTCACCTGATTTGA 57.452 36.000 0.00 0.00 32.29 2.69
3650 4185 9.884636 TTATCCGGTATATATTCACCTGATTTG 57.115 33.333 13.66 0.00 38.95 2.32
3654 4189 9.262240 TCATTTATCCGGTATATATTCACCTGA 57.738 33.333 0.00 3.01 33.34 3.86
3655 4190 9.884636 TTCATTTATCCGGTATATATTCACCTG 57.115 33.333 0.00 0.00 32.29 4.00
3656 4191 9.886132 GTTCATTTATCCGGTATATATTCACCT 57.114 33.333 0.00 0.00 32.29 4.00
3657 4192 9.661563 TGTTCATTTATCCGGTATATATTCACC 57.338 33.333 0.00 0.00 0.00 4.02
3664 4199 9.847224 AAAACTCTGTTCATTTATCCGGTATAT 57.153 29.630 0.00 0.00 0.00 0.86
3665 4200 9.321562 GAAAACTCTGTTCATTTATCCGGTATA 57.678 33.333 0.00 0.00 0.00 1.47
3666 4201 8.047310 AGAAAACTCTGTTCATTTATCCGGTAT 58.953 33.333 0.00 0.00 0.00 2.73
3667 4202 7.391620 AGAAAACTCTGTTCATTTATCCGGTA 58.608 34.615 0.00 0.00 0.00 4.02
3668 4203 6.238648 AGAAAACTCTGTTCATTTATCCGGT 58.761 36.000 0.00 0.00 0.00 5.28
3669 4204 6.743575 AGAAAACTCTGTTCATTTATCCGG 57.256 37.500 0.00 0.00 0.00 5.14
3680 4215 9.717942 GCCATGATATCTATAGAAAACTCTGTT 57.282 33.333 6.52 0.00 0.00 3.16
3681 4216 9.099071 AGCCATGATATCTATAGAAAACTCTGT 57.901 33.333 6.52 0.00 0.00 3.41
3682 4217 9.941325 AAGCCATGATATCTATAGAAAACTCTG 57.059 33.333 6.52 1.24 0.00 3.35
3683 4218 9.941325 CAAGCCATGATATCTATAGAAAACTCT 57.059 33.333 6.52 0.00 0.00 3.24
3684 4219 9.717942 ACAAGCCATGATATCTATAGAAAACTC 57.282 33.333 6.52 2.42 0.00 3.01
3687 4222 9.851686 ACAACAAGCCATGATATCTATAGAAAA 57.148 29.630 6.52 0.00 0.00 2.29
3688 4223 9.276590 CACAACAAGCCATGATATCTATAGAAA 57.723 33.333 6.52 0.00 0.00 2.52
3689 4224 8.432013 ACACAACAAGCCATGATATCTATAGAA 58.568 33.333 6.52 0.00 0.00 2.10
3690 4225 7.966812 ACACAACAAGCCATGATATCTATAGA 58.033 34.615 4.57 4.57 0.00 1.98
3691 4226 9.144747 GTACACAACAAGCCATGATATCTATAG 57.855 37.037 3.98 0.00 0.00 1.31
3692 4227 8.646900 TGTACACAACAAGCCATGATATCTATA 58.353 33.333 3.98 0.00 34.29 1.31
3693 4228 7.442364 GTGTACACAACAAGCCATGATATCTAT 59.558 37.037 21.14 0.00 40.63 1.98
3694 4229 6.761242 GTGTACACAACAAGCCATGATATCTA 59.239 38.462 21.14 0.00 40.63 1.98
3695 4230 5.586243 GTGTACACAACAAGCCATGATATCT 59.414 40.000 21.14 0.00 40.63 1.98
3696 4231 5.353956 TGTGTACACAACAAGCCATGATATC 59.646 40.000 26.07 0.00 40.63 1.63
3697 4232 5.252547 TGTGTACACAACAAGCCATGATAT 58.747 37.500 26.07 0.00 40.63 1.63
3698 4233 4.646572 TGTGTACACAACAAGCCATGATA 58.353 39.130 26.07 0.00 40.63 2.15
3699 4234 3.485394 TGTGTACACAACAAGCCATGAT 58.515 40.909 26.07 0.00 40.63 2.45
3700 4235 2.924421 TGTGTACACAACAAGCCATGA 58.076 42.857 26.07 0.00 40.63 3.07
3701 4236 3.706802 TTGTGTACACAACAAGCCATG 57.293 42.857 32.37 0.00 45.42 3.66
3711 4246 6.427242 TCACTGTTACTTTGTTTGTGTACACA 59.573 34.615 24.62 24.62 39.98 3.72
3712 4247 6.833839 TCACTGTTACTTTGTTTGTGTACAC 58.166 36.000 19.36 19.36 0.00 2.90
3713 4248 7.436430 TTCACTGTTACTTTGTTTGTGTACA 57.564 32.000 0.00 0.00 0.00 2.90
3716 4251 8.682710 ACATATTCACTGTTACTTTGTTTGTGT 58.317 29.630 0.00 0.00 0.00 3.72
3722 4257 9.216117 GGAAGTACATATTCACTGTTACTTTGT 57.784 33.333 0.00 0.00 0.00 2.83
3723 4258 9.436957 AGGAAGTACATATTCACTGTTACTTTG 57.563 33.333 0.00 0.00 0.00 2.77
3724 4259 9.654663 GAGGAAGTACATATTCACTGTTACTTT 57.345 33.333 0.00 0.00 0.00 2.66
3725 4260 8.258708 GGAGGAAGTACATATTCACTGTTACTT 58.741 37.037 0.00 0.00 0.00 2.24
3726 4261 7.416438 CGGAGGAAGTACATATTCACTGTTACT 60.416 40.741 0.00 0.00 0.00 2.24
3727 4262 6.696148 CGGAGGAAGTACATATTCACTGTTAC 59.304 42.308 0.00 0.00 0.00 2.50
3728 4263 6.802608 CGGAGGAAGTACATATTCACTGTTA 58.197 40.000 0.00 0.00 0.00 2.41
3729 4264 5.661458 CGGAGGAAGTACATATTCACTGTT 58.339 41.667 0.00 0.00 0.00 3.16
3730 4265 5.263968 CGGAGGAAGTACATATTCACTGT 57.736 43.478 0.00 0.00 0.00 3.55
3748 4283 2.877335 CGAAAGTAAGAAGGACCGGAG 58.123 52.381 9.46 0.00 0.00 4.63
3749 4284 1.067354 GCGAAAGTAAGAAGGACCGGA 60.067 52.381 9.46 0.00 0.00 5.14
3750 4285 1.337447 TGCGAAAGTAAGAAGGACCGG 60.337 52.381 0.00 0.00 0.00 5.28
3751 4286 2.074547 TGCGAAAGTAAGAAGGACCG 57.925 50.000 0.00 0.00 0.00 4.79
3752 4287 6.985059 ACTTATATGCGAAAGTAAGAAGGACC 59.015 38.462 5.44 0.00 34.23 4.46
3753 4288 8.421673 AACTTATATGCGAAAGTAAGAAGGAC 57.578 34.615 5.44 0.00 34.91 3.85
3754 4289 9.444600 AAAACTTATATGCGAAAGTAAGAAGGA 57.555 29.630 5.44 0.00 34.91 3.36
3755 4290 9.490663 CAAAACTTATATGCGAAAGTAAGAAGG 57.509 33.333 5.44 0.00 34.91 3.46
3758 4293 9.431887 AGACAAAACTTATATGCGAAAGTAAGA 57.568 29.630 5.44 0.00 34.91 2.10
3759 4294 9.478019 CAGACAAAACTTATATGCGAAAGTAAG 57.522 33.333 0.00 0.00 34.91 2.34
3760 4295 9.210329 TCAGACAAAACTTATATGCGAAAGTAA 57.790 29.630 0.00 0.00 34.91 2.24
3761 4296 8.766000 TCAGACAAAACTTATATGCGAAAGTA 57.234 30.769 0.00 0.00 34.91 2.24
3762 4297 7.667043 TCAGACAAAACTTATATGCGAAAGT 57.333 32.000 0.00 0.00 37.54 2.66
3763 4298 8.230486 ACTTCAGACAAAACTTATATGCGAAAG 58.770 33.333 0.00 0.00 0.00 2.62
3764 4299 8.094798 ACTTCAGACAAAACTTATATGCGAAA 57.905 30.769 0.00 0.00 0.00 3.46
3765 4300 7.667043 ACTTCAGACAAAACTTATATGCGAA 57.333 32.000 0.00 0.00 0.00 4.70
3766 4301 8.766000 TTACTTCAGACAAAACTTATATGCGA 57.234 30.769 0.00 0.00 0.00 5.10
3767 4302 9.478019 CTTTACTTCAGACAAAACTTATATGCG 57.522 33.333 0.00 0.00 0.00 4.73
3775 4310 9.342308 TGATCAATCTTTACTTCAGACAAAACT 57.658 29.630 0.00 0.00 0.00 2.66
3776 4311 9.950680 TTGATCAATCTTTACTTCAGACAAAAC 57.049 29.630 3.38 0.00 0.00 2.43
3806 4341 9.927081 ATTGTGGATGTTAGAATTTTCTCCTAT 57.073 29.630 0.00 0.00 38.70 2.57
3808 4343 9.178758 GTATTGTGGATGTTAGAATTTTCTCCT 57.821 33.333 0.00 0.00 38.70 3.69
3809 4344 8.122952 CGTATTGTGGATGTTAGAATTTTCTCC 58.877 37.037 0.00 0.00 38.70 3.71
3810 4345 8.879759 TCGTATTGTGGATGTTAGAATTTTCTC 58.120 33.333 0.00 0.00 38.70 2.87
3811 4346 8.786826 TCGTATTGTGGATGTTAGAATTTTCT 57.213 30.769 0.00 0.00 41.24 2.52
3812 4347 9.834628 TTTCGTATTGTGGATGTTAGAATTTTC 57.165 29.630 0.00 0.00 0.00 2.29
3851 4386 6.542574 TTGAAATCCAAACAATGTTGCATC 57.457 33.333 0.00 0.00 0.00 3.91
3852 4387 8.618702 TTATTGAAATCCAAACAATGTTGCAT 57.381 26.923 0.00 0.00 38.43 3.96
3853 4388 8.442632 TTTATTGAAATCCAAACAATGTTGCA 57.557 26.923 0.00 0.00 38.43 4.08
3907 4443 7.946655 TTACTCCGCATATAAGATTTGTCTG 57.053 36.000 0.00 0.00 0.00 3.51
3935 4471 7.687941 TTTGATTTCCTCAGATTTACTGTCC 57.312 36.000 0.00 0.00 45.86 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.