Multiple sequence alignment - TraesCS6D01G379200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G379200 chr6D 100.000 2678 0 0 1 2678 460845862 460848539 0.000000e+00 4946.0
1 TraesCS6D01G379200 chr6D 94.118 85 5 0 1 85 11192926 11192842 2.160000e-26 130.0
2 TraesCS6D01G379200 chr6B 84.561 2118 133 84 164 2151 702369352 702371405 0.000000e+00 1921.0
3 TraesCS6D01G379200 chr6B 82.082 413 46 9 2152 2536 702371434 702371846 7.150000e-86 327.0
4 TraesCS6D01G379200 chr6A 85.632 1733 128 50 368 2048 607407704 607409367 0.000000e+00 1709.0
5 TraesCS6D01G379200 chr6A 92.593 54 2 2 1745 1797 606758313 606758261 2.860000e-10 76.8
6 TraesCS6D01G379200 chr5A 95.294 85 4 0 1 85 524915020 524915104 4.650000e-28 135.0
7 TraesCS6D01G379200 chr3A 95.294 85 4 0 1 85 716967305 716967221 4.650000e-28 135.0
8 TraesCS6D01G379200 chr2D 95.294 85 4 0 1 85 590163795 590163711 4.650000e-28 135.0
9 TraesCS6D01G379200 chr2D 95.294 85 4 0 1 85 643337979 643337895 4.650000e-28 135.0
10 TraesCS6D01G379200 chrUn 94.118 85 5 0 1 85 255618802 255618718 2.160000e-26 130.0
11 TraesCS6D01G379200 chrUn 94.118 85 5 0 1 85 347383977 347384061 2.160000e-26 130.0
12 TraesCS6D01G379200 chrUn 94.118 85 5 0 1 85 404982513 404982597 2.160000e-26 130.0
13 TraesCS6D01G379200 chr3D 92.391 92 5 2 16 106 104401858 104401948 2.160000e-26 130.0
14 TraesCS6D01G379200 chr4D 89.655 58 6 0 1 58 497916513 497916456 1.030000e-09 75.0
15 TraesCS6D01G379200 chr5D 100.000 29 0 0 103 131 21251981 21252009 1.000000e-03 54.7
16 TraesCS6D01G379200 chr5D 100.000 29 0 0 103 131 326413235 326413263 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G379200 chr6D 460845862 460848539 2677 False 4946 4946 100.0000 1 2678 1 chr6D.!!$F1 2677
1 TraesCS6D01G379200 chr6B 702369352 702371846 2494 False 1124 1921 83.3215 164 2536 2 chr6B.!!$F1 2372
2 TraesCS6D01G379200 chr6A 607407704 607409367 1663 False 1709 1709 85.6320 368 2048 1 chr6A.!!$F1 1680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.107831 TCTGAACCAAACACCCCTCG 59.892 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2252 0.035881 TGCTGTCTTTCTCTGCTGGG 59.964 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.997942 AGGAACTTTTTAGTACCAGAGACT 57.002 37.500 0.00 0.00 27.25 3.24
25 26 8.124808 AGGAACTTTTTAGTACCAGAGACTAG 57.875 38.462 0.00 0.00 27.25 2.57
26 27 7.949006 AGGAACTTTTTAGTACCAGAGACTAGA 59.051 37.037 0.00 0.00 27.25 2.43
27 28 8.583296 GGAACTTTTTAGTACCAGAGACTAGAA 58.417 37.037 0.00 0.00 31.22 2.10
28 29 9.978044 GAACTTTTTAGTACCAGAGACTAGAAA 57.022 33.333 0.00 0.00 34.28 2.52
33 34 9.978044 TTTTAGTACCAGAGACTAGAAAAAGTC 57.022 33.333 0.00 0.00 45.20 3.01
34 35 6.593268 AGTACCAGAGACTAGAAAAAGTCC 57.407 41.667 0.00 0.00 45.86 3.85
35 36 4.893829 ACCAGAGACTAGAAAAAGTCCC 57.106 45.455 0.00 0.00 45.86 4.46
36 37 4.494591 ACCAGAGACTAGAAAAAGTCCCT 58.505 43.478 0.00 0.00 45.86 4.20
37 38 5.652324 ACCAGAGACTAGAAAAAGTCCCTA 58.348 41.667 0.00 0.00 45.86 3.53
38 39 6.082707 ACCAGAGACTAGAAAAAGTCCCTAA 58.917 40.000 0.00 0.00 45.86 2.69
39 40 6.557633 ACCAGAGACTAGAAAAAGTCCCTAAA 59.442 38.462 0.00 0.00 45.86 1.85
40 41 7.072076 ACCAGAGACTAGAAAAAGTCCCTAAAA 59.928 37.037 0.00 0.00 45.86 1.52
41 42 7.937394 CCAGAGACTAGAAAAAGTCCCTAAAAA 59.063 37.037 0.00 0.00 45.86 1.94
42 43 8.994170 CAGAGACTAGAAAAAGTCCCTAAAAAG 58.006 37.037 0.00 0.00 45.86 2.27
43 44 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
44 45 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
45 46 8.715842 AGACTAGAAAAAGTCCCTAAAAAGTCT 58.284 33.333 0.00 0.00 45.86 3.24
46 47 9.339850 GACTAGAAAAAGTCCCTAAAAAGTCTT 57.660 33.333 0.00 0.00 40.06 3.01
47 48 9.696572 ACTAGAAAAAGTCCCTAAAAAGTCTTT 57.303 29.630 0.00 0.00 0.00 2.52
50 51 9.916360 AGAAAAAGTCCCTAAAAAGTCTTTAGA 57.084 29.630 0.00 0.00 34.74 2.10
54 55 8.461249 AAGTCCCTAAAAAGTCTTTAGAAACC 57.539 34.615 0.00 0.00 34.74 3.27
55 56 7.580007 AGTCCCTAAAAAGTCTTTAGAAACCA 58.420 34.615 0.00 0.00 34.74 3.67
56 57 8.057011 AGTCCCTAAAAAGTCTTTAGAAACCAA 58.943 33.333 0.00 0.00 34.74 3.67
57 58 8.689061 GTCCCTAAAAAGTCTTTAGAAACCAAA 58.311 33.333 0.00 0.00 34.74 3.28
58 59 8.689061 TCCCTAAAAAGTCTTTAGAAACCAAAC 58.311 33.333 0.00 0.00 34.74 2.93
59 60 8.471609 CCCTAAAAAGTCTTTAGAAACCAAACA 58.528 33.333 0.00 0.00 34.74 2.83
60 61 9.516314 CCTAAAAAGTCTTTAGAAACCAAACAG 57.484 33.333 0.00 0.00 34.74 3.16
61 62 9.516314 CTAAAAAGTCTTTAGAAACCAAACAGG 57.484 33.333 0.00 0.00 37.51 4.00
62 63 7.712204 AAAAGTCTTTAGAAACCAAACAGGA 57.288 32.000 0.00 0.00 41.22 3.86
63 64 6.944234 AAGTCTTTAGAAACCAAACAGGAG 57.056 37.500 0.00 0.00 41.22 3.69
64 65 5.377478 AGTCTTTAGAAACCAAACAGGAGG 58.623 41.667 0.00 0.00 41.22 4.30
65 66 4.519350 GTCTTTAGAAACCAAACAGGAGGG 59.481 45.833 0.00 0.00 41.22 4.30
66 67 4.414182 TCTTTAGAAACCAAACAGGAGGGA 59.586 41.667 0.00 0.00 41.22 4.20
67 68 2.658807 AGAAACCAAACAGGAGGGAC 57.341 50.000 0.00 0.00 41.22 4.46
69 70 2.514160 AGAAACCAAACAGGAGGGACTT 59.486 45.455 0.00 0.00 41.55 3.01
70 71 3.052869 AGAAACCAAACAGGAGGGACTTT 60.053 43.478 0.00 0.00 41.55 2.66
71 72 3.398318 AACCAAACAGGAGGGACTTTT 57.602 42.857 0.00 0.00 41.55 2.27
72 73 3.398318 ACCAAACAGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
73 74 3.296854 ACCAAACAGGAGGGACTTTTTC 58.703 45.455 0.00 0.00 41.55 2.29
74 75 3.052869 ACCAAACAGGAGGGACTTTTTCT 60.053 43.478 0.00 0.00 41.55 2.52
75 76 4.167307 ACCAAACAGGAGGGACTTTTTCTA 59.833 41.667 0.00 0.00 41.55 2.10
76 77 4.519350 CCAAACAGGAGGGACTTTTTCTAC 59.481 45.833 0.00 0.00 41.55 2.59
77 78 5.130350 CAAACAGGAGGGACTTTTTCTACA 58.870 41.667 0.00 0.00 41.55 2.74
78 79 4.625607 ACAGGAGGGACTTTTTCTACAG 57.374 45.455 0.00 0.00 41.55 2.74
79 80 3.328050 ACAGGAGGGACTTTTTCTACAGG 59.672 47.826 0.00 0.00 41.55 4.00
80 81 2.913617 AGGAGGGACTTTTTCTACAGGG 59.086 50.000 0.00 0.00 41.55 4.45
81 82 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
82 83 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
83 84 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
84 85 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
85 86 5.160386 AGGGACTTTTTCTACAGGGACTAA 58.840 41.667 0.00 0.00 28.08 2.24
86 87 5.791141 AGGGACTTTTTCTACAGGGACTAAT 59.209 40.000 0.00 0.00 28.08 1.73
87 88 6.964086 AGGGACTTTTTCTACAGGGACTAATA 59.036 38.462 0.00 0.00 28.08 0.98
88 89 7.125963 AGGGACTTTTTCTACAGGGACTAATAG 59.874 40.741 0.00 0.00 28.08 1.73
89 90 7.125356 GGGACTTTTTCTACAGGGACTAATAGA 59.875 40.741 0.00 0.00 36.02 1.98
90 91 8.198778 GGACTTTTTCTACAGGGACTAATAGAG 58.801 40.741 0.00 0.00 36.89 2.43
91 92 8.667592 ACTTTTTCTACAGGGACTAATAGAGT 57.332 34.615 0.00 0.00 42.90 3.24
123 124 3.655276 GTCGTAGGACTTCTGAACCAA 57.345 47.619 8.31 0.00 40.15 3.67
124 125 3.986277 GTCGTAGGACTTCTGAACCAAA 58.014 45.455 8.31 0.00 40.15 3.28
125 126 3.739810 GTCGTAGGACTTCTGAACCAAAC 59.260 47.826 8.31 0.00 40.15 2.93
126 127 3.385433 TCGTAGGACTTCTGAACCAAACA 59.615 43.478 0.58 0.00 0.00 2.83
127 128 3.493503 CGTAGGACTTCTGAACCAAACAC 59.506 47.826 0.58 0.00 0.00 3.32
128 129 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
129 130 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
130 131 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
131 132 1.569072 ACTTCTGAACCAAACACCCCT 59.431 47.619 0.00 0.00 0.00 4.79
132 133 2.230660 CTTCTGAACCAAACACCCCTC 58.769 52.381 0.00 0.00 0.00 4.30
133 134 0.107831 TCTGAACCAAACACCCCTCG 59.892 55.000 0.00 0.00 0.00 4.63
134 135 0.179029 CTGAACCAAACACCCCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
135 136 0.256464 TGAACCAAACACCCCTCGTT 59.744 50.000 0.00 0.00 0.00 3.85
136 137 1.341187 TGAACCAAACACCCCTCGTTT 60.341 47.619 0.00 0.00 37.04 3.60
137 138 1.752498 GAACCAAACACCCCTCGTTTT 59.248 47.619 0.00 0.00 34.40 2.43
138 139 1.107945 ACCAAACACCCCTCGTTTTG 58.892 50.000 0.00 0.00 34.40 2.44
139 140 0.249280 CCAAACACCCCTCGTTTTGC 60.249 55.000 0.00 0.00 34.40 3.68
140 141 0.744281 CAAACACCCCTCGTTTTGCT 59.256 50.000 0.00 0.00 34.40 3.91
141 142 1.136110 CAAACACCCCTCGTTTTGCTT 59.864 47.619 0.00 0.00 34.40 3.91
142 143 0.744281 AACACCCCTCGTTTTGCTTG 59.256 50.000 0.00 0.00 0.00 4.01
143 144 1.007387 CACCCCTCGTTTTGCTTGC 60.007 57.895 0.00 0.00 0.00 4.01
144 145 2.200337 ACCCCTCGTTTTGCTTGCC 61.200 57.895 0.00 0.00 0.00 4.52
145 146 1.903404 CCCCTCGTTTTGCTTGCCT 60.903 57.895 0.00 0.00 0.00 4.75
146 147 1.286880 CCCTCGTTTTGCTTGCCTG 59.713 57.895 0.00 0.00 0.00 4.85
147 148 1.372128 CCTCGTTTTGCTTGCCTGC 60.372 57.895 0.00 0.00 0.00 4.85
148 149 1.727022 CTCGTTTTGCTTGCCTGCG 60.727 57.895 0.00 0.00 35.36 5.18
149 150 2.730604 CGTTTTGCTTGCCTGCGG 60.731 61.111 0.00 0.00 35.36 5.69
150 151 2.417097 GTTTTGCTTGCCTGCGGT 59.583 55.556 0.00 0.00 35.36 5.68
151 152 1.661509 GTTTTGCTTGCCTGCGGTC 60.662 57.895 0.00 0.00 35.36 4.79
152 153 2.855514 TTTTGCTTGCCTGCGGTCC 61.856 57.895 0.00 0.00 35.36 4.46
153 154 3.790416 TTTGCTTGCCTGCGGTCCT 62.790 57.895 0.00 0.00 35.36 3.85
154 155 3.790416 TTGCTTGCCTGCGGTCCTT 62.790 57.895 0.00 0.00 35.36 3.36
155 156 3.435186 GCTTGCCTGCGGTCCTTC 61.435 66.667 0.00 0.00 0.00 3.46
156 157 2.348998 CTTGCCTGCGGTCCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
157 158 1.743252 CTTGCCTGCGGTCCTTCTC 60.743 63.158 0.00 0.00 0.00 2.87
158 159 2.177594 CTTGCCTGCGGTCCTTCTCT 62.178 60.000 0.00 0.00 0.00 3.10
159 160 2.172483 TTGCCTGCGGTCCTTCTCTC 62.172 60.000 0.00 0.00 0.00 3.20
160 161 2.355193 GCCTGCGGTCCTTCTCTCT 61.355 63.158 0.00 0.00 0.00 3.10
161 162 1.813192 CCTGCGGTCCTTCTCTCTC 59.187 63.158 0.00 0.00 0.00 3.20
162 163 0.967887 CCTGCGGTCCTTCTCTCTCA 60.968 60.000 0.00 0.00 0.00 3.27
167 168 2.014128 CGGTCCTTCTCTCTCACTCTC 58.986 57.143 0.00 0.00 0.00 3.20
198 199 6.378710 AGATTATCTTTTTCGCTTTAGGGC 57.621 37.500 0.00 0.00 0.00 5.19
206 207 0.532573 TCGCTTTAGGGCTGTCAGAG 59.467 55.000 3.32 0.00 0.00 3.35
216 217 1.133325 GGCTGTCAGAGAGATAGGGGA 60.133 57.143 3.32 0.00 36.12 4.81
230 231 2.899303 AGGGGACATTGGTTAAGGTG 57.101 50.000 0.00 0.00 29.76 4.00
262 266 1.597742 TTTGCCAGTCTGTTGCTCTC 58.402 50.000 0.00 0.00 0.00 3.20
277 281 2.039818 CTCTCATGGAGCTGCATTGT 57.960 50.000 19.19 0.00 35.08 2.71
278 282 1.671328 CTCTCATGGAGCTGCATTGTG 59.329 52.381 19.19 9.56 35.08 3.33
279 283 1.279846 TCTCATGGAGCTGCATTGTGA 59.720 47.619 19.19 13.58 0.00 3.58
280 284 1.671328 CTCATGGAGCTGCATTGTGAG 59.329 52.381 19.19 19.04 0.00 3.51
281 285 0.738975 CATGGAGCTGCATTGTGAGG 59.261 55.000 19.19 2.05 0.00 3.86
282 286 0.622136 ATGGAGCTGCATTGTGAGGA 59.378 50.000 15.88 0.00 0.00 3.71
294 298 1.028130 TGTGAGGAGAGCTGCTATCG 58.972 55.000 17.11 0.00 0.00 2.92
310 314 5.939457 TGCTATCGACCTATCATTTCTACG 58.061 41.667 0.00 0.00 0.00 3.51
311 315 5.704053 TGCTATCGACCTATCATTTCTACGA 59.296 40.000 0.00 0.00 0.00 3.43
313 317 6.908284 GCTATCGACCTATCATTTCTACGATC 59.092 42.308 0.00 0.00 39.36 3.69
319 323 7.095144 CGACCTATCATTTCTACGATCTGTACT 60.095 40.741 0.00 0.00 0.00 2.73
356 370 1.209504 GTATGGCCAAGTAGCACTCCA 59.790 52.381 10.96 0.00 0.00 3.86
360 374 1.486726 GGCCAAGTAGCACTCCATACT 59.513 52.381 0.00 0.00 33.67 2.12
363 377 3.637229 GCCAAGTAGCACTCCATACTCTA 59.363 47.826 0.00 0.00 31.03 2.43
368 382 7.770897 CCAAGTAGCACTCCATACTCTAAAAAT 59.229 37.037 0.00 0.00 31.03 1.82
373 387 7.048512 AGCACTCCATACTCTAAAAATGTACC 58.951 38.462 0.00 0.00 0.00 3.34
379 393 8.480501 TCCATACTCTAAAAATGTACCTGTACC 58.519 37.037 5.07 0.00 35.26 3.34
388 412 2.086869 TGTACCTGTACCTGCTACGTC 58.913 52.381 0.00 0.00 35.26 4.34
389 413 1.403323 GTACCTGTACCTGCTACGTCC 59.597 57.143 0.00 0.00 0.00 4.79
396 420 1.177256 ACCTGCTACGTCCACGAGTT 61.177 55.000 6.03 0.00 43.02 3.01
483 510 4.734854 CGTTCAGAGTTTGGAAATTGTGTG 59.265 41.667 0.00 0.00 0.00 3.82
484 511 4.305989 TCAGAGTTTGGAAATTGTGTGC 57.694 40.909 0.00 0.00 0.00 4.57
493 520 3.562779 AATTGTGTGCGCTGCTGCC 62.563 57.895 9.73 3.70 35.36 4.85
575 602 3.075283 TCAAAGACCAGACCTCTCTCTCT 59.925 47.826 0.00 0.00 0.00 3.10
576 603 3.366052 AAGACCAGACCTCTCTCTCTC 57.634 52.381 0.00 0.00 0.00 3.20
584 611 1.005450 ACCTCTCTCTCTCCACTCCAC 59.995 57.143 0.00 0.00 0.00 4.02
587 614 1.283613 TCTCTCTCTCCACTCCACTCC 59.716 57.143 0.00 0.00 0.00 3.85
588 615 1.005332 CTCTCTCTCCACTCCACTCCA 59.995 57.143 0.00 0.00 0.00 3.86
653 700 0.602562 GCAGAGTGAGCTGAGTGAGT 59.397 55.000 0.00 0.00 38.14 3.41
654 701 1.815613 GCAGAGTGAGCTGAGTGAGTA 59.184 52.381 0.00 0.00 38.14 2.59
738 797 1.621107 CAGCGTACGTACACGGAAAT 58.379 50.000 24.50 0.00 44.95 2.17
750 809 3.384927 GGAAATCTCCGTCGCGTG 58.615 61.111 5.77 0.00 30.03 5.34
771 830 4.994756 CCCGGTTTGCTTGCCCCT 62.995 66.667 0.00 0.00 0.00 4.79
774 833 3.373565 GGTTTGCTTGCCCCTCCG 61.374 66.667 0.00 0.00 0.00 4.63
776 835 3.897122 TTTGCTTGCCCCTCCGGT 61.897 61.111 0.00 0.00 0.00 5.28
778 837 4.659172 TGCTTGCCCCTCCGGTTG 62.659 66.667 0.00 0.00 0.00 3.77
779 838 4.344865 GCTTGCCCCTCCGGTTGA 62.345 66.667 0.00 0.00 0.00 3.18
780 839 2.359975 CTTGCCCCTCCGGTTGAC 60.360 66.667 0.00 0.00 0.00 3.18
781 840 2.852075 TTGCCCCTCCGGTTGACT 60.852 61.111 0.00 0.00 0.00 3.41
782 841 3.190738 TTGCCCCTCCGGTTGACTG 62.191 63.158 0.00 0.00 0.00 3.51
935 1042 1.005215 CACTCCCCTGCTTCCTCATTT 59.995 52.381 0.00 0.00 0.00 2.32
962 1080 1.865340 GTTTCTTTCAGCTCGTTCGGT 59.135 47.619 0.00 0.00 0.00 4.69
963 1081 2.234300 TTCTTTCAGCTCGTTCGGTT 57.766 45.000 0.00 0.00 0.00 4.44
995 1113 0.334676 AGAGACAGAGTAGCCTGCCT 59.665 55.000 0.00 0.00 37.68 4.75
1024 1145 3.240134 AAGAAGAAGAGCGGCGGCA 62.240 57.895 19.21 0.00 43.41 5.69
1025 1146 2.731691 AAGAAGAAGAGCGGCGGCAA 62.732 55.000 19.21 0.00 43.41 4.52
1026 1147 3.028366 GAAGAAGAGCGGCGGCAAC 62.028 63.158 19.21 11.65 43.41 4.17
1047 1168 4.410400 GGCGGGGAGAAGGTGGTG 62.410 72.222 0.00 0.00 0.00 4.17
1048 1169 4.410400 GCGGGGAGAAGGTGGTGG 62.410 72.222 0.00 0.00 0.00 4.61
1049 1170 4.410400 CGGGGAGAAGGTGGTGGC 62.410 72.222 0.00 0.00 0.00 5.01
1404 1543 2.350458 GCGTTACCAGTACGGGGGA 61.350 63.158 16.82 1.95 40.22 4.81
1740 1907 1.472878 CGTCGGATCATCATACCGGAT 59.527 52.381 9.46 0.00 45.61 4.18
1742 1909 1.743394 TCGGATCATCATACCGGATCG 59.257 52.381 9.46 0.00 45.61 3.69
1783 1953 9.634163 CATATACATATGCGTACTCCTTTTGTA 57.366 33.333 1.58 0.00 34.37 2.41
1793 1971 6.679884 GCGTACTCCTTTTGTACTAGCAGTAT 60.680 42.308 0.00 0.00 38.39 2.12
1859 2048 2.774234 TCGGGTAGTGGTAGTAGTAGCT 59.226 50.000 8.20 0.00 0.00 3.32
1937 2126 6.372937 TGTTCATGTATATTTTGCGGTTGAGA 59.627 34.615 0.00 0.00 0.00 3.27
1942 2131 7.015226 TGTATATTTTGCGGTTGAGAGATTG 57.985 36.000 0.00 0.00 0.00 2.67
1943 2132 6.597672 TGTATATTTTGCGGTTGAGAGATTGT 59.402 34.615 0.00 0.00 0.00 2.71
1944 2133 4.853924 ATTTTGCGGTTGAGAGATTGTT 57.146 36.364 0.00 0.00 0.00 2.83
1945 2134 3.624326 TTTGCGGTTGAGAGATTGTTG 57.376 42.857 0.00 0.00 0.00 3.33
1957 2146 5.104776 TGAGAGATTGTTGGAGTTCCCTATG 60.105 44.000 0.00 0.00 35.38 2.23
1958 2147 3.879892 GAGATTGTTGGAGTTCCCTATGC 59.120 47.826 0.00 0.00 35.38 3.14
1959 2148 3.525199 AGATTGTTGGAGTTCCCTATGCT 59.475 43.478 0.00 0.00 35.38 3.79
1960 2149 4.721776 AGATTGTTGGAGTTCCCTATGCTA 59.278 41.667 0.00 0.00 35.38 3.49
1961 2150 5.370880 AGATTGTTGGAGTTCCCTATGCTAT 59.629 40.000 0.00 0.00 35.38 2.97
1962 2151 4.422073 TGTTGGAGTTCCCTATGCTATG 57.578 45.455 0.00 0.00 35.38 2.23
1963 2152 3.142174 GTTGGAGTTCCCTATGCTATGC 58.858 50.000 0.00 0.00 35.38 3.14
1964 2153 1.344438 TGGAGTTCCCTATGCTATGCG 59.656 52.381 0.00 0.00 35.38 4.73
1965 2154 1.344763 GGAGTTCCCTATGCTATGCGT 59.655 52.381 0.00 0.00 0.00 5.24
1966 2155 2.561419 GGAGTTCCCTATGCTATGCGTA 59.439 50.000 0.00 0.00 0.00 4.42
1967 2156 3.195825 GGAGTTCCCTATGCTATGCGTAT 59.804 47.826 0.00 0.00 29.23 3.06
1968 2157 4.177026 GAGTTCCCTATGCTATGCGTATG 58.823 47.826 0.00 0.00 29.23 2.39
1969 2158 3.832490 AGTTCCCTATGCTATGCGTATGA 59.168 43.478 0.00 0.00 29.23 2.15
2070 2267 0.392327 GAGGCCCAGCAGAGAAAGAC 60.392 60.000 0.00 0.00 0.00 3.01
2072 2269 0.676151 GGCCCAGCAGAGAAAGACAG 60.676 60.000 0.00 0.00 0.00 3.51
2073 2270 1.304509 GCCCAGCAGAGAAAGACAGC 61.305 60.000 0.00 0.00 0.00 4.40
2074 2271 0.035881 CCCAGCAGAGAAAGACAGCA 59.964 55.000 0.00 0.00 0.00 4.41
2076 2273 0.788995 CAGCAGAGAAAGACAGCACG 59.211 55.000 0.00 0.00 0.00 5.34
2077 2274 0.390860 AGCAGAGAAAGACAGCACGT 59.609 50.000 0.00 0.00 0.00 4.49
2078 2275 1.613925 AGCAGAGAAAGACAGCACGTA 59.386 47.619 0.00 0.00 0.00 3.57
2079 2276 1.989165 GCAGAGAAAGACAGCACGTAG 59.011 52.381 0.00 0.00 0.00 3.51
2080 2277 2.600731 CAGAGAAAGACAGCACGTAGG 58.399 52.381 0.00 0.00 0.00 3.18
2081 2278 2.029828 CAGAGAAAGACAGCACGTAGGT 60.030 50.000 0.00 0.00 0.00 3.08
2087 2292 1.228769 ACAGCACGTAGGTCCCTGA 60.229 57.895 15.72 0.00 0.00 3.86
2095 2300 2.301009 ACGTAGGTCCCTGAAACGATTT 59.699 45.455 12.70 0.00 37.04 2.17
2097 2302 3.615592 CGTAGGTCCCTGAAACGATTTGA 60.616 47.826 1.73 0.00 35.66 2.69
2103 2308 2.488153 CCCTGAAACGATTTGAACCCTC 59.512 50.000 0.00 0.00 0.00 4.30
2120 2326 0.253394 CTCCCCCTTCTTCCCCTCTT 60.253 60.000 0.00 0.00 0.00 2.85
2147 2353 1.080093 GATCGAACAGTCACGGGCA 60.080 57.895 0.00 0.00 0.00 5.36
2159 2393 2.350895 CGGGCATGTCCAACTCCA 59.649 61.111 18.31 0.00 36.21 3.86
2160 2394 1.303236 CGGGCATGTCCAACTCCAA 60.303 57.895 18.31 0.00 36.21 3.53
2166 2400 1.069022 CATGTCCAACTCCAACGCTTG 60.069 52.381 0.00 0.00 0.00 4.01
2172 2406 1.798813 CAACTCCAACGCTTGACCTAC 59.201 52.381 0.15 0.00 0.00 3.18
2178 2412 3.074412 CCAACGCTTGACCTACATTTCT 58.926 45.455 0.15 0.00 0.00 2.52
2242 2476 2.148768 CTTGGTCCAAAAGTACCGGTC 58.851 52.381 12.40 2.55 38.70 4.79
2247 2481 3.069289 GTCCAAAAGTACCGGTCGAATT 58.931 45.455 12.40 0.00 0.00 2.17
2248 2482 4.244862 GTCCAAAAGTACCGGTCGAATTA 58.755 43.478 12.40 0.00 0.00 1.40
2249 2483 4.872124 GTCCAAAAGTACCGGTCGAATTAT 59.128 41.667 12.40 0.00 0.00 1.28
2250 2484 6.042143 GTCCAAAAGTACCGGTCGAATTATA 58.958 40.000 12.40 0.00 0.00 0.98
2301 2561 5.888982 AATATGAACCCTAGATCGGTTGT 57.111 39.130 8.09 0.97 43.75 3.32
2317 2577 4.353437 GTCGCCGTCGTCCTTGGT 62.353 66.667 0.00 0.00 36.96 3.67
2324 2584 0.728466 CGTCGTCCTTGGTCGTCTTC 60.728 60.000 6.24 0.00 0.00 2.87
2326 2586 1.067776 GTCGTCCTTGGTCGTCTTCAT 60.068 52.381 6.24 0.00 0.00 2.57
2330 2590 1.071542 TCCTTGGTCGTCTTCATTGCA 59.928 47.619 0.00 0.00 0.00 4.08
2339 2599 1.726791 GTCTTCATTGCATGTCGTCGT 59.273 47.619 0.00 0.00 0.00 4.34
2341 2601 1.726248 CTTCATTGCATGTCGTCGTCA 59.274 47.619 0.00 0.00 0.00 4.35
2353 2613 1.848932 CGTCGTCACCGTCTTCCTCA 61.849 60.000 0.00 0.00 35.01 3.86
2355 2615 0.526211 TCGTCACCGTCTTCCTCATG 59.474 55.000 0.00 0.00 35.01 3.07
2446 2712 3.441011 GACCACGTATCGGCCCCTG 62.441 68.421 0.00 0.00 0.00 4.45
2536 2802 1.358759 CACCAACGCCAAGTTCCAC 59.641 57.895 0.00 0.00 42.02 4.02
2537 2803 1.826487 ACCAACGCCAAGTTCCACC 60.826 57.895 0.00 0.00 42.02 4.61
2538 2804 2.637025 CAACGCCAAGTTCCACCG 59.363 61.111 0.00 0.00 42.02 4.94
2539 2805 2.184167 CAACGCCAAGTTCCACCGT 61.184 57.895 0.00 0.00 42.02 4.83
2540 2806 0.881159 CAACGCCAAGTTCCACCGTA 60.881 55.000 0.00 0.00 42.02 4.02
2541 2807 0.601841 AACGCCAAGTTCCACCGTAG 60.602 55.000 0.00 0.00 39.16 3.51
2542 2808 2.388232 CGCCAAGTTCCACCGTAGC 61.388 63.158 0.00 0.00 0.00 3.58
2543 2809 1.003718 GCCAAGTTCCACCGTAGCT 60.004 57.895 0.00 0.00 0.00 3.32
2544 2810 1.019805 GCCAAGTTCCACCGTAGCTC 61.020 60.000 0.00 0.00 0.00 4.09
2545 2811 0.391263 CCAAGTTCCACCGTAGCTCC 60.391 60.000 0.00 0.00 0.00 4.70
2546 2812 0.736325 CAAGTTCCACCGTAGCTCCG 60.736 60.000 0.00 0.00 0.00 4.63
2547 2813 1.183676 AAGTTCCACCGTAGCTCCGT 61.184 55.000 0.00 0.00 0.00 4.69
2548 2814 1.445582 GTTCCACCGTAGCTCCGTG 60.446 63.158 0.00 0.00 0.00 4.94
2549 2815 1.904865 TTCCACCGTAGCTCCGTGT 60.905 57.895 0.00 0.00 0.00 4.49
2550 2816 1.870055 TTCCACCGTAGCTCCGTGTC 61.870 60.000 0.00 0.00 0.00 3.67
2551 2817 2.202440 CACCGTAGCTCCGTGTCG 60.202 66.667 0.00 0.00 0.00 4.35
2552 2818 2.670934 ACCGTAGCTCCGTGTCGT 60.671 61.111 0.00 0.00 0.00 4.34
2553 2819 2.202440 CCGTAGCTCCGTGTCGTG 60.202 66.667 0.00 0.00 0.00 4.35
2554 2820 2.559840 CGTAGCTCCGTGTCGTGT 59.440 61.111 0.00 0.00 0.00 4.49
2555 2821 1.511464 CGTAGCTCCGTGTCGTGTC 60.511 63.158 0.00 0.00 0.00 3.67
2556 2822 1.511464 GTAGCTCCGTGTCGTGTCG 60.511 63.158 0.00 0.00 0.00 4.35
2557 2823 3.318539 TAGCTCCGTGTCGTGTCGC 62.319 63.158 0.00 0.00 0.00 5.19
2558 2824 4.702081 GCTCCGTGTCGTGTCGCT 62.702 66.667 0.00 0.00 0.00 4.93
2559 2825 2.502080 CTCCGTGTCGTGTCGCTC 60.502 66.667 0.00 0.00 0.00 5.03
2560 2826 3.948086 CTCCGTGTCGTGTCGCTCC 62.948 68.421 0.00 0.00 0.00 4.70
2561 2827 4.039357 CCGTGTCGTGTCGCTCCT 62.039 66.667 0.00 0.00 0.00 3.69
2562 2828 2.050351 CGTGTCGTGTCGCTCCTT 60.050 61.111 0.00 0.00 0.00 3.36
2563 2829 2.081212 CGTGTCGTGTCGCTCCTTC 61.081 63.158 0.00 0.00 0.00 3.46
2564 2830 1.007734 GTGTCGTGTCGCTCCTTCA 60.008 57.895 0.00 0.00 0.00 3.02
2565 2831 0.388649 GTGTCGTGTCGCTCCTTCAT 60.389 55.000 0.00 0.00 0.00 2.57
2566 2832 0.109272 TGTCGTGTCGCTCCTTCATC 60.109 55.000 0.00 0.00 0.00 2.92
2567 2833 0.171455 GTCGTGTCGCTCCTTCATCT 59.829 55.000 0.00 0.00 0.00 2.90
2568 2834 0.452184 TCGTGTCGCTCCTTCATCTC 59.548 55.000 0.00 0.00 0.00 2.75
2569 2835 0.526524 CGTGTCGCTCCTTCATCTCC 60.527 60.000 0.00 0.00 0.00 3.71
2570 2836 0.820871 GTGTCGCTCCTTCATCTCCT 59.179 55.000 0.00 0.00 0.00 3.69
2571 2837 1.107114 TGTCGCTCCTTCATCTCCTC 58.893 55.000 0.00 0.00 0.00 3.71
2572 2838 0.030101 GTCGCTCCTTCATCTCCTCG 59.970 60.000 0.00 0.00 0.00 4.63
2573 2839 0.107165 TCGCTCCTTCATCTCCTCGA 60.107 55.000 0.00 0.00 0.00 4.04
2574 2840 0.310543 CGCTCCTTCATCTCCTCGAG 59.689 60.000 5.13 5.13 0.00 4.04
2575 2841 0.031994 GCTCCTTCATCTCCTCGAGC 59.968 60.000 6.99 0.00 36.33 5.03
2576 2842 1.691196 CTCCTTCATCTCCTCGAGCT 58.309 55.000 6.99 0.00 0.00 4.09
2577 2843 1.608590 CTCCTTCATCTCCTCGAGCTC 59.391 57.143 6.99 2.73 0.00 4.09
2578 2844 0.673437 CCTTCATCTCCTCGAGCTCC 59.327 60.000 6.99 0.00 0.00 4.70
2579 2845 0.310543 CTTCATCTCCTCGAGCTCCG 59.689 60.000 6.99 3.57 40.25 4.63
2580 2846 1.103987 TTCATCTCCTCGAGCTCCGG 61.104 60.000 6.99 9.27 39.14 5.14
2581 2847 2.203422 ATCTCCTCGAGCTCCGGG 60.203 66.667 6.99 10.60 39.14 5.73
2582 2848 2.758207 ATCTCCTCGAGCTCCGGGA 61.758 63.158 17.82 17.82 42.61 5.14
2583 2849 2.075355 ATCTCCTCGAGCTCCGGGAT 62.075 60.000 18.77 14.76 42.61 3.85
2584 2850 2.519541 TCCTCGAGCTCCGGGATG 60.520 66.667 15.71 2.89 42.61 3.51
2585 2851 3.610669 CCTCGAGCTCCGGGATGG 61.611 72.222 6.99 0.40 42.61 3.51
2586 2852 2.835431 CTCGAGCTCCGGGATGGT 60.835 66.667 8.47 0.00 42.61 3.55
2587 2853 3.144120 CTCGAGCTCCGGGATGGTG 62.144 68.421 8.47 0.00 42.61 4.17
2588 2854 3.147595 CGAGCTCCGGGATGGTGA 61.148 66.667 8.47 0.00 39.52 4.02
2589 2855 2.501610 GAGCTCCGGGATGGTGAC 59.498 66.667 0.87 0.00 39.52 3.67
2590 2856 3.432051 GAGCTCCGGGATGGTGACG 62.432 68.421 0.87 0.00 39.52 4.35
2591 2857 3.771160 GCTCCGGGATGGTGACGT 61.771 66.667 0.00 0.00 39.52 4.34
2592 2858 2.494918 CTCCGGGATGGTGACGTC 59.505 66.667 9.11 9.11 46.03 4.34
2599 2865 2.566997 GATGGTGACGTCGTCGATG 58.433 57.895 19.81 12.90 40.62 3.84
2600 2866 0.866061 GATGGTGACGTCGTCGATGG 60.866 60.000 19.81 7.02 40.62 3.51
2601 2867 2.879462 GGTGACGTCGTCGATGGC 60.879 66.667 19.81 16.11 40.62 4.40
2602 2868 2.879462 GTGACGTCGTCGATGGCC 60.879 66.667 17.59 9.55 40.62 5.36
2603 2869 4.470170 TGACGTCGTCGATGGCCG 62.470 66.667 17.59 9.47 40.62 6.13
2604 2870 4.170062 GACGTCGTCGATGGCCGA 62.170 66.667 18.28 8.00 46.35 5.54
2618 2884 3.908189 CCGACAATGGCATCTGCA 58.092 55.556 0.00 0.00 44.36 4.41
2619 2885 1.430632 CCGACAATGGCATCTGCAC 59.569 57.895 0.00 0.02 44.36 4.57
2620 2886 1.061411 CGACAATGGCATCTGCACG 59.939 57.895 0.00 7.69 44.36 5.34
2621 2887 1.638388 CGACAATGGCATCTGCACGT 61.638 55.000 0.00 0.00 44.36 4.49
2622 2888 0.097674 GACAATGGCATCTGCACGTC 59.902 55.000 0.00 0.00 44.36 4.34
2623 2889 0.606130 ACAATGGCATCTGCACGTCA 60.606 50.000 0.00 0.00 44.36 4.35
2624 2890 0.522626 CAATGGCATCTGCACGTCAA 59.477 50.000 0.00 0.00 44.36 3.18
2625 2891 0.806868 AATGGCATCTGCACGTCAAG 59.193 50.000 0.00 0.00 44.36 3.02
2626 2892 1.028330 ATGGCATCTGCACGTCAAGG 61.028 55.000 4.33 0.00 44.36 3.61
2627 2893 2.482374 GCATCTGCACGTCAAGGC 59.518 61.111 0.00 0.00 41.59 4.35
2628 2894 3.044059 GCATCTGCACGTCAAGGCC 62.044 63.158 0.00 0.00 41.59 5.19
2629 2895 2.434884 ATCTGCACGTCAAGGCCG 60.435 61.111 0.00 0.00 0.00 6.13
2630 2896 3.240134 ATCTGCACGTCAAGGCCGT 62.240 57.895 0.00 0.00 39.52 5.68
2631 2897 3.414700 CTGCACGTCAAGGCCGTC 61.415 66.667 0.00 0.00 36.17 4.79
2632 2898 4.980805 TGCACGTCAAGGCCGTCC 62.981 66.667 0.00 0.00 36.17 4.79
2634 2900 4.308458 CACGTCAAGGCCGTCCCA 62.308 66.667 0.00 0.00 36.17 4.37
2635 2901 4.309950 ACGTCAAGGCCGTCCCAC 62.310 66.667 0.00 0.00 31.97 4.61
2636 2902 4.003788 CGTCAAGGCCGTCCCACT 62.004 66.667 0.00 0.00 35.39 4.00
2637 2903 2.430367 GTCAAGGCCGTCCCACTT 59.570 61.111 0.00 0.00 35.39 3.16
2638 2904 1.966451 GTCAAGGCCGTCCCACTTG 60.966 63.158 0.00 0.00 42.14 3.16
2639 2905 2.144078 TCAAGGCCGTCCCACTTGA 61.144 57.895 0.00 0.00 45.83 3.02
2640 2906 1.966451 CAAGGCCGTCCCACTTGAC 60.966 63.158 0.00 0.00 43.13 3.18
2646 2912 3.952811 GTCCCACTTGACGTGCTC 58.047 61.111 0.00 0.00 42.42 4.26
2647 2913 2.022129 GTCCCACTTGACGTGCTCG 61.022 63.158 6.63 6.63 42.42 5.03
2648 2914 2.738521 CCCACTTGACGTGCTCGG 60.739 66.667 13.32 0.00 42.42 4.63
2649 2915 2.338620 CCACTTGACGTGCTCGGA 59.661 61.111 13.32 0.00 42.42 4.55
2650 2916 2.022129 CCACTTGACGTGCTCGGAC 61.022 63.158 13.32 6.88 42.42 4.79
2651 2917 1.007271 CACTTGACGTGCTCGGACT 60.007 57.895 13.32 0.00 41.85 3.85
2652 2918 1.004277 CACTTGACGTGCTCGGACTC 61.004 60.000 13.32 1.83 41.85 3.36
2653 2919 1.797933 CTTGACGTGCTCGGACTCG 60.798 63.158 13.32 0.00 41.85 4.18
2654 2920 2.183858 CTTGACGTGCTCGGACTCGA 62.184 60.000 13.32 0.47 43.86 4.04
2655 2921 2.202324 GACGTGCTCGGACTCGAC 60.202 66.667 13.32 0.00 40.88 4.20
2656 2922 3.664223 GACGTGCTCGGACTCGACC 62.664 68.421 13.32 0.00 40.88 4.79
2668 2934 3.744719 TCGACCGCCGAGTCCTTG 61.745 66.667 0.00 0.00 43.23 3.61
2669 2935 3.744719 CGACCGCCGAGTCCTTGA 61.745 66.667 0.00 0.00 41.76 3.02
2670 2936 2.182030 GACCGCCGAGTCCTTGAG 59.818 66.667 0.00 0.00 0.00 3.02
2671 2937 3.991536 GACCGCCGAGTCCTTGAGC 62.992 68.421 0.00 0.00 0.00 4.26
2672 2938 4.069232 CCGCCGAGTCCTTGAGCA 62.069 66.667 0.00 0.00 0.00 4.26
2673 2939 2.811317 CGCCGAGTCCTTGAGCAC 60.811 66.667 0.00 0.00 0.00 4.40
2674 2940 2.435059 GCCGAGTCCTTGAGCACC 60.435 66.667 0.00 0.00 0.00 5.01
2675 2941 2.948720 GCCGAGTCCTTGAGCACCT 61.949 63.158 0.00 0.00 0.00 4.00
2676 2942 1.674057 CCGAGTCCTTGAGCACCTT 59.326 57.895 0.00 0.00 0.00 3.50
2677 2943 0.390472 CCGAGTCCTTGAGCACCTTC 60.390 60.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.120140 TCTAGTCTCTGGTACTAAAAAGTTCC 57.880 38.462 0.00 0.00 0.00 3.62
2 3 9.978044 TTTCTAGTCTCTGGTACTAAAAAGTTC 57.022 33.333 0.00 0.00 0.00 3.01
8 9 8.583296 GGACTTTTTCTAGTCTCTGGTACTAAA 58.417 37.037 0.00 0.00 43.26 1.85
9 10 7.178097 GGGACTTTTTCTAGTCTCTGGTACTAA 59.822 40.741 0.00 0.00 41.50 2.24
10 11 6.662663 GGGACTTTTTCTAGTCTCTGGTACTA 59.337 42.308 0.00 0.00 41.50 1.82
11 12 5.481122 GGGACTTTTTCTAGTCTCTGGTACT 59.519 44.000 0.00 0.00 41.50 2.73
12 13 5.722263 GGGACTTTTTCTAGTCTCTGGTAC 58.278 45.833 0.00 0.00 41.50 3.34
13 14 5.997384 GGGACTTTTTCTAGTCTCTGGTA 57.003 43.478 0.00 0.00 41.50 3.25
14 15 4.893829 GGGACTTTTTCTAGTCTCTGGT 57.106 45.455 0.00 0.00 41.50 4.00
18 19 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
19 20 8.715842 AGACTTTTTAGGGACTTTTTCTAGTCT 58.284 33.333 0.00 0.00 43.26 3.24
20 21 8.905660 AGACTTTTTAGGGACTTTTTCTAGTC 57.094 34.615 0.00 0.00 43.05 2.59
21 22 9.696572 AAAGACTTTTTAGGGACTTTTTCTAGT 57.303 29.630 0.00 0.00 41.75 2.57
24 25 9.916360 TCTAAAGACTTTTTAGGGACTTTTTCT 57.084 29.630 5.61 0.00 41.75 2.52
28 29 8.910944 GGTTTCTAAAGACTTTTTAGGGACTTT 58.089 33.333 5.61 0.00 41.75 2.66
29 30 8.057011 TGGTTTCTAAAGACTTTTTAGGGACTT 58.943 33.333 5.61 0.00 41.75 3.01
30 31 7.580007 TGGTTTCTAAAGACTTTTTAGGGACT 58.420 34.615 5.61 0.00 46.37 3.85
31 32 7.812690 TGGTTTCTAAAGACTTTTTAGGGAC 57.187 36.000 5.61 1.87 33.88 4.46
32 33 8.689061 GTTTGGTTTCTAAAGACTTTTTAGGGA 58.311 33.333 5.61 0.00 33.88 4.20
33 34 8.471609 TGTTTGGTTTCTAAAGACTTTTTAGGG 58.528 33.333 5.61 0.00 33.88 3.53
34 35 9.516314 CTGTTTGGTTTCTAAAGACTTTTTAGG 57.484 33.333 5.61 0.00 33.88 2.69
35 36 9.516314 CCTGTTTGGTTTCTAAAGACTTTTTAG 57.484 33.333 5.61 0.00 34.26 1.85
36 37 9.245481 TCCTGTTTGGTTTCTAAAGACTTTTTA 57.755 29.630 5.61 0.00 37.07 1.52
37 38 8.129496 TCCTGTTTGGTTTCTAAAGACTTTTT 57.871 30.769 5.61 0.00 37.07 1.94
38 39 7.147897 CCTCCTGTTTGGTTTCTAAAGACTTTT 60.148 37.037 5.61 0.00 37.07 2.27
39 40 6.321435 CCTCCTGTTTGGTTTCTAAAGACTTT 59.679 38.462 5.62 5.62 37.07 2.66
40 41 5.828328 CCTCCTGTTTGGTTTCTAAAGACTT 59.172 40.000 0.00 0.00 37.07 3.01
41 42 5.377478 CCTCCTGTTTGGTTTCTAAAGACT 58.623 41.667 0.00 0.00 37.07 3.24
42 43 4.519350 CCCTCCTGTTTGGTTTCTAAAGAC 59.481 45.833 0.00 0.00 37.07 3.01
43 44 4.414182 TCCCTCCTGTTTGGTTTCTAAAGA 59.586 41.667 0.00 0.00 37.07 2.52
44 45 4.519350 GTCCCTCCTGTTTGGTTTCTAAAG 59.481 45.833 0.00 0.00 37.07 1.85
45 46 4.167307 AGTCCCTCCTGTTTGGTTTCTAAA 59.833 41.667 0.00 0.00 37.07 1.85
46 47 3.720002 AGTCCCTCCTGTTTGGTTTCTAA 59.280 43.478 0.00 0.00 37.07 2.10
47 48 3.323775 AGTCCCTCCTGTTTGGTTTCTA 58.676 45.455 0.00 0.00 37.07 2.10
48 49 2.136026 AGTCCCTCCTGTTTGGTTTCT 58.864 47.619 0.00 0.00 37.07 2.52
49 50 2.658807 AGTCCCTCCTGTTTGGTTTC 57.341 50.000 0.00 0.00 37.07 2.78
50 51 3.398318 AAAGTCCCTCCTGTTTGGTTT 57.602 42.857 0.00 0.00 37.07 3.27
51 52 3.398318 AAAAGTCCCTCCTGTTTGGTT 57.602 42.857 0.00 0.00 37.07 3.67
52 53 3.052869 AGAAAAAGTCCCTCCTGTTTGGT 60.053 43.478 0.00 0.00 37.07 3.67
53 54 3.566351 AGAAAAAGTCCCTCCTGTTTGG 58.434 45.455 0.00 0.00 37.10 3.28
54 55 5.130350 TGTAGAAAAAGTCCCTCCTGTTTG 58.870 41.667 0.00 0.00 0.00 2.93
55 56 5.377478 CTGTAGAAAAAGTCCCTCCTGTTT 58.623 41.667 0.00 0.00 0.00 2.83
56 57 4.202472 CCTGTAGAAAAAGTCCCTCCTGTT 60.202 45.833 0.00 0.00 0.00 3.16
57 58 3.328050 CCTGTAGAAAAAGTCCCTCCTGT 59.672 47.826 0.00 0.00 0.00 4.00
58 59 3.307762 CCCTGTAGAAAAAGTCCCTCCTG 60.308 52.174 0.00 0.00 0.00 3.86
59 60 2.913617 CCCTGTAGAAAAAGTCCCTCCT 59.086 50.000 0.00 0.00 0.00 3.69
60 61 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
61 62 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
62 63 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
63 64 5.494390 TTAGTCCCTGTAGAAAAAGTCCC 57.506 43.478 0.00 0.00 0.00 4.46
64 65 8.075761 TCTATTAGTCCCTGTAGAAAAAGTCC 57.924 38.462 0.00 0.00 0.00 3.85
65 66 8.751242 ACTCTATTAGTCCCTGTAGAAAAAGTC 58.249 37.037 0.00 0.00 30.33 3.01
66 67 8.667592 ACTCTATTAGTCCCTGTAGAAAAAGT 57.332 34.615 0.00 0.00 30.33 2.66
103 104 3.655276 TTGGTTCAGAAGTCCTACGAC 57.345 47.619 0.00 0.00 39.50 4.34
104 105 3.385433 TGTTTGGTTCAGAAGTCCTACGA 59.615 43.478 0.00 0.00 0.00 3.43
105 106 3.493503 GTGTTTGGTTCAGAAGTCCTACG 59.506 47.826 0.00 0.00 0.00 3.51
106 107 3.813724 GGTGTTTGGTTCAGAAGTCCTAC 59.186 47.826 0.00 0.00 0.00 3.18
107 108 3.181448 GGGTGTTTGGTTCAGAAGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
108 109 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
109 110 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
110 111 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
111 112 1.569072 AGGGGTGTTTGGTTCAGAAGT 59.431 47.619 0.00 0.00 0.00 3.01
112 113 2.230660 GAGGGGTGTTTGGTTCAGAAG 58.769 52.381 0.00 0.00 0.00 2.85
113 114 1.476110 CGAGGGGTGTTTGGTTCAGAA 60.476 52.381 0.00 0.00 0.00 3.02
114 115 0.107831 CGAGGGGTGTTTGGTTCAGA 59.892 55.000 0.00 0.00 0.00 3.27
115 116 0.179029 ACGAGGGGTGTTTGGTTCAG 60.179 55.000 0.00 0.00 0.00 3.02
116 117 0.256464 AACGAGGGGTGTTTGGTTCA 59.744 50.000 0.00 0.00 0.00 3.18
117 118 1.395635 AAACGAGGGGTGTTTGGTTC 58.604 50.000 0.00 0.00 38.08 3.62
118 119 1.478916 CAAAACGAGGGGTGTTTGGTT 59.521 47.619 0.00 0.00 39.36 3.67
119 120 1.107945 CAAAACGAGGGGTGTTTGGT 58.892 50.000 0.00 0.00 39.36 3.67
120 121 0.249280 GCAAAACGAGGGGTGTTTGG 60.249 55.000 0.00 0.00 39.36 3.28
121 122 0.744281 AGCAAAACGAGGGGTGTTTG 59.256 50.000 0.00 0.00 39.36 2.93
122 123 1.136110 CAAGCAAAACGAGGGGTGTTT 59.864 47.619 0.00 0.00 41.07 2.83
123 124 0.744281 CAAGCAAAACGAGGGGTGTT 59.256 50.000 0.00 0.00 0.00 3.32
124 125 1.734388 GCAAGCAAAACGAGGGGTGT 61.734 55.000 0.00 0.00 0.00 4.16
125 126 1.007387 GCAAGCAAAACGAGGGGTG 60.007 57.895 0.00 0.00 0.00 4.61
126 127 2.200337 GGCAAGCAAAACGAGGGGT 61.200 57.895 0.00 0.00 0.00 4.95
127 128 1.903404 AGGCAAGCAAAACGAGGGG 60.903 57.895 0.00 0.00 0.00 4.79
128 129 1.286880 CAGGCAAGCAAAACGAGGG 59.713 57.895 0.00 0.00 0.00 4.30
129 130 1.372128 GCAGGCAAGCAAAACGAGG 60.372 57.895 0.00 0.00 0.00 4.63
130 131 1.727022 CGCAGGCAAGCAAAACGAG 60.727 57.895 0.00 0.00 0.00 4.18
131 132 2.331098 CGCAGGCAAGCAAAACGA 59.669 55.556 0.00 0.00 0.00 3.85
132 133 2.730604 CCGCAGGCAAGCAAAACG 60.731 61.111 2.94 0.00 46.14 3.60
144 145 0.172352 GTGAGAGAGAAGGACCGCAG 59.828 60.000 0.00 0.00 0.00 5.18
145 146 0.251386 AGTGAGAGAGAAGGACCGCA 60.251 55.000 0.00 0.00 0.00 5.69
146 147 0.454196 GAGTGAGAGAGAAGGACCGC 59.546 60.000 0.00 0.00 0.00 5.68
147 148 2.014128 GAGAGTGAGAGAGAAGGACCG 58.986 57.143 0.00 0.00 0.00 4.79
148 149 3.016736 CTGAGAGTGAGAGAGAAGGACC 58.983 54.545 0.00 0.00 0.00 4.46
149 150 3.950397 TCTGAGAGTGAGAGAGAAGGAC 58.050 50.000 0.00 0.00 0.00 3.85
150 151 4.649267 TTCTGAGAGTGAGAGAGAAGGA 57.351 45.455 0.00 0.00 0.00 3.36
151 152 4.158394 CCTTTCTGAGAGTGAGAGAGAAGG 59.842 50.000 0.00 0.00 0.00 3.46
152 153 5.009631 TCCTTTCTGAGAGTGAGAGAGAAG 58.990 45.833 0.00 0.00 0.00 2.85
153 154 4.991776 TCCTTTCTGAGAGTGAGAGAGAA 58.008 43.478 0.00 0.00 0.00 2.87
154 155 4.288366 TCTCCTTTCTGAGAGTGAGAGAGA 59.712 45.833 10.33 5.25 36.48 3.10
155 156 4.588899 TCTCCTTTCTGAGAGTGAGAGAG 58.411 47.826 10.33 3.49 36.48 3.20
156 157 4.649267 TCTCCTTTCTGAGAGTGAGAGA 57.351 45.455 10.33 5.79 36.48 3.10
157 158 5.920193 AATCTCCTTTCTGAGAGTGAGAG 57.080 43.478 15.95 7.59 44.19 3.20
158 159 7.353525 AGATAATCTCCTTTCTGAGAGTGAGA 58.646 38.462 14.29 14.29 44.19 3.27
159 160 7.587037 AGATAATCTCCTTTCTGAGAGTGAG 57.413 40.000 1.64 7.12 44.19 3.51
160 161 7.969690 AAGATAATCTCCTTTCTGAGAGTGA 57.030 36.000 1.64 0.00 44.19 3.41
161 162 9.447157 AAAAAGATAATCTCCTTTCTGAGAGTG 57.553 33.333 1.64 0.00 44.19 3.51
162 163 9.665719 GAAAAAGATAATCTCCTTTCTGAGAGT 57.334 33.333 0.00 0.00 44.19 3.24
167 168 7.313951 AGCGAAAAAGATAATCTCCTTTCTG 57.686 36.000 0.00 0.00 31.38 3.02
198 199 3.304911 TGTCCCCTATCTCTCTGACAG 57.695 52.381 0.00 0.00 0.00 3.51
206 207 4.412528 ACCTTAACCAATGTCCCCTATCTC 59.587 45.833 0.00 0.00 0.00 2.75
216 217 4.332828 GCTTAGACCACCTTAACCAATGT 58.667 43.478 0.00 0.00 0.00 2.71
247 251 1.277273 TCCATGAGAGCAACAGACTGG 59.723 52.381 7.51 0.00 0.00 4.00
248 252 2.619147 CTCCATGAGAGCAACAGACTG 58.381 52.381 0.00 0.00 35.31 3.51
262 266 0.738975 CCTCACAATGCAGCTCCATG 59.261 55.000 0.00 0.00 0.00 3.66
269 273 1.370609 CAGCTCTCCTCACAATGCAG 58.629 55.000 0.00 0.00 0.00 4.41
276 280 1.001815 GTCGATAGCAGCTCTCCTCAC 60.002 57.143 0.00 0.00 0.00 3.51
277 281 1.313772 GTCGATAGCAGCTCTCCTCA 58.686 55.000 0.00 0.00 0.00 3.86
278 282 0.596082 GGTCGATAGCAGCTCTCCTC 59.404 60.000 0.00 0.00 0.00 3.71
279 283 0.184933 AGGTCGATAGCAGCTCTCCT 59.815 55.000 0.00 0.00 0.00 3.69
280 284 1.898902 TAGGTCGATAGCAGCTCTCC 58.101 55.000 0.00 0.00 0.00 3.71
281 285 3.078097 TGATAGGTCGATAGCAGCTCTC 58.922 50.000 0.00 0.00 0.00 3.20
282 286 3.147553 TGATAGGTCGATAGCAGCTCT 57.852 47.619 0.00 0.00 0.00 4.09
294 298 8.101654 AGTACAGATCGTAGAAATGATAGGTC 57.898 38.462 0.00 0.00 43.58 3.85
319 323 4.941263 GCCATACTGAAATCAACCACTGTA 59.059 41.667 0.00 0.00 0.00 2.74
356 370 7.985752 GCAGGTACAGGTACATTTTTAGAGTAT 59.014 37.037 11.35 0.00 37.78 2.12
360 374 6.368779 AGCAGGTACAGGTACATTTTTAGA 57.631 37.500 11.35 0.00 37.78 2.10
363 377 4.933400 CGTAGCAGGTACAGGTACATTTTT 59.067 41.667 19.96 0.00 46.67 1.94
368 382 2.086869 GACGTAGCAGGTACAGGTACA 58.913 52.381 19.96 0.00 46.67 2.90
373 387 0.179171 CGTGGACGTAGCAGGTACAG 60.179 60.000 10.37 5.53 25.78 2.74
379 393 0.039437 ACAACTCGTGGACGTAGCAG 60.039 55.000 0.00 0.00 40.80 4.24
388 412 4.552166 ACTGAAAATTGACAACTCGTGG 57.448 40.909 0.00 0.00 0.00 4.94
389 413 5.130519 CGTACTGAAAATTGACAACTCGTG 58.869 41.667 0.00 0.00 0.00 4.35
396 420 7.252965 TCATCAAACGTACTGAAAATTGACA 57.747 32.000 4.53 0.00 30.46 3.58
498 525 2.714259 TTGGGAAGGAACGCAACAG 58.286 52.632 0.00 0.00 37.69 3.16
501 528 0.464013 TTCGTTGGGAAGGAACGCAA 60.464 50.000 0.00 0.00 44.61 4.85
502 529 0.882927 CTTCGTTGGGAAGGAACGCA 60.883 55.000 0.00 0.00 46.89 5.24
575 602 1.188219 GCTCAGTGGAGTGGAGTGGA 61.188 60.000 0.00 0.00 43.37 4.02
576 603 1.190833 AGCTCAGTGGAGTGGAGTGG 61.191 60.000 0.00 0.00 43.37 4.00
584 611 2.436292 GCAGCCAGCTCAGTGGAG 60.436 66.667 0.00 0.00 40.44 3.86
622 649 3.146066 CTCACTCTGCTAGCTAGGTAGG 58.854 54.545 26.09 14.21 0.00 3.18
626 673 1.337703 CAGCTCACTCTGCTAGCTAGG 59.662 57.143 22.10 7.95 44.58 3.02
653 700 6.073276 CGTGATTTTGATTTGTGAGGTGACTA 60.073 38.462 0.00 0.00 44.43 2.59
692 751 3.823330 ATCTGTCGCCGTCCGGTC 61.823 66.667 7.66 0.00 37.59 4.79
693 752 4.129737 CATCTGTCGCCGTCCGGT 62.130 66.667 7.66 0.00 37.59 5.28
694 753 3.758088 CTCATCTGTCGCCGTCCGG 62.758 68.421 0.24 0.24 37.59 5.14
836 899 3.069980 GCGATGGGAGACAGAGCGT 62.070 63.158 0.00 0.00 0.00 5.07
838 901 1.520342 GTGCGATGGGAGACAGAGC 60.520 63.158 0.00 0.00 36.39 4.09
935 1042 2.545526 CGAGCTGAAAGAAACTTGAGCA 59.454 45.455 0.00 2.20 37.93 4.26
962 1080 3.954258 TCTGTCTCTCTCTCACACACAAA 59.046 43.478 0.00 0.00 0.00 2.83
963 1081 3.555966 TCTGTCTCTCTCTCACACACAA 58.444 45.455 0.00 0.00 0.00 3.33
995 1113 1.710244 TCTTCTTCTTCCCCATGGCAA 59.290 47.619 6.09 0.00 0.00 4.52
1034 1155 4.410400 CCGCCACCACCTTCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
1390 1529 1.000739 CCTGTCCCCCGTACTGGTA 59.999 63.158 2.38 0.00 35.15 3.25
1718 1885 1.808343 CCGGTATGATGATCCGACGTA 59.192 52.381 4.38 0.00 46.05 3.57
1723 1890 1.799181 GCGATCCGGTATGATGATCCG 60.799 57.143 0.00 0.00 43.30 4.18
1783 1953 9.581289 ACTGAACTGAGATATAATACTGCTAGT 57.419 33.333 0.00 0.00 0.00 2.57
1815 1993 2.469516 CCGGCCGATTGCTACCAAC 61.470 63.158 30.73 0.00 40.92 3.77
1816 1994 1.978455 ATCCGGCCGATTGCTACCAA 61.978 55.000 30.73 0.00 40.92 3.67
1817 1995 2.439960 ATCCGGCCGATTGCTACCA 61.440 57.895 30.73 0.00 40.92 3.25
1818 1996 1.961277 CATCCGGCCGATTGCTACC 60.961 63.158 30.73 0.00 40.92 3.18
1841 2024 4.521146 TCACAGCTACTACTACCACTACC 58.479 47.826 0.00 0.00 0.00 3.18
1843 2026 5.055144 CGATCACAGCTACTACTACCACTA 58.945 45.833 0.00 0.00 0.00 2.74
1859 2048 3.321968 CCCTGGATTCAGTATCGATCACA 59.678 47.826 0.00 0.00 39.31 3.58
1937 2126 3.525199 AGCATAGGGAACTCCAACAATCT 59.475 43.478 0.00 0.00 43.67 2.40
1942 2131 3.142174 GCATAGCATAGGGAACTCCAAC 58.858 50.000 0.00 0.00 43.67 3.77
1943 2132 2.224281 CGCATAGCATAGGGAACTCCAA 60.224 50.000 0.00 0.00 43.67 3.53
1944 2133 1.344438 CGCATAGCATAGGGAACTCCA 59.656 52.381 0.00 0.00 43.67 3.86
1945 2134 1.344763 ACGCATAGCATAGGGAACTCC 59.655 52.381 0.00 0.00 43.67 3.85
1957 2146 5.679906 ACGATTTTCATTCATACGCATAGC 58.320 37.500 0.00 0.00 0.00 2.97
1958 2147 6.574832 CCAACGATTTTCATTCATACGCATAG 59.425 38.462 0.00 0.00 0.00 2.23
1959 2148 6.258947 TCCAACGATTTTCATTCATACGCATA 59.741 34.615 0.00 0.00 0.00 3.14
1960 2149 5.065859 TCCAACGATTTTCATTCATACGCAT 59.934 36.000 0.00 0.00 0.00 4.73
1961 2150 4.393371 TCCAACGATTTTCATTCATACGCA 59.607 37.500 0.00 0.00 0.00 5.24
1962 2151 4.904116 TCCAACGATTTTCATTCATACGC 58.096 39.130 0.00 0.00 0.00 4.42
1963 2152 6.106877 ACTCCAACGATTTTCATTCATACG 57.893 37.500 0.00 0.00 0.00 3.06
1964 2153 8.237267 AGAAACTCCAACGATTTTCATTCATAC 58.763 33.333 0.00 0.00 39.13 2.39
1965 2154 8.335532 AGAAACTCCAACGATTTTCATTCATA 57.664 30.769 0.00 0.00 39.13 2.15
1966 2155 7.219484 AGAAACTCCAACGATTTTCATTCAT 57.781 32.000 0.00 0.00 39.13 2.57
1967 2156 6.633500 AGAAACTCCAACGATTTTCATTCA 57.367 33.333 0.00 0.00 39.13 2.57
1968 2157 7.534239 GTGTAGAAACTCCAACGATTTTCATTC 59.466 37.037 0.00 0.00 39.13 2.67
1969 2158 7.228706 AGTGTAGAAACTCCAACGATTTTCATT 59.771 33.333 0.00 0.00 39.13 2.57
2055 2252 0.035881 TGCTGTCTTTCTCTGCTGGG 59.964 55.000 0.00 0.00 0.00 4.45
2070 2267 0.320374 TTTCAGGGACCTACGTGCTG 59.680 55.000 0.00 0.00 0.00 4.41
2072 2269 1.012486 CGTTTCAGGGACCTACGTGC 61.012 60.000 0.00 0.00 0.00 5.34
2073 2270 0.599558 TCGTTTCAGGGACCTACGTG 59.400 55.000 10.82 0.00 34.15 4.49
2074 2271 1.553706 ATCGTTTCAGGGACCTACGT 58.446 50.000 10.82 0.00 34.15 3.57
2076 2273 3.934068 TCAAATCGTTTCAGGGACCTAC 58.066 45.455 0.00 0.00 0.00 3.18
2077 2274 4.320870 GTTCAAATCGTTTCAGGGACCTA 58.679 43.478 0.00 0.00 0.00 3.08
2078 2275 3.146847 GTTCAAATCGTTTCAGGGACCT 58.853 45.455 0.00 0.00 0.00 3.85
2079 2276 2.228103 GGTTCAAATCGTTTCAGGGACC 59.772 50.000 0.00 0.00 0.00 4.46
2080 2277 2.228103 GGGTTCAAATCGTTTCAGGGAC 59.772 50.000 0.00 0.00 0.00 4.46
2081 2278 2.107552 AGGGTTCAAATCGTTTCAGGGA 59.892 45.455 0.00 0.00 0.00 4.20
2087 2292 1.549265 GGGGGAGGGTTCAAATCGTTT 60.549 52.381 0.00 0.00 0.00 3.60
2095 2300 0.845102 GGAAGAAGGGGGAGGGTTCA 60.845 60.000 0.00 0.00 0.00 3.18
2097 2302 1.544151 GGGAAGAAGGGGGAGGGTT 60.544 63.158 0.00 0.00 0.00 4.11
2103 2308 0.626382 GAAAGAGGGGAAGAAGGGGG 59.374 60.000 0.00 0.00 0.00 5.40
2120 2326 2.752903 TGACTGTTCGATCGATGGAGAA 59.247 45.455 20.18 0.00 0.00 2.87
2147 2353 1.202758 TCAAGCGTTGGAGTTGGACAT 60.203 47.619 0.00 0.00 0.00 3.06
2159 2393 4.392138 GCTAAGAAATGTAGGTCAAGCGTT 59.608 41.667 0.00 0.00 0.00 4.84
2160 2394 3.933332 GCTAAGAAATGTAGGTCAAGCGT 59.067 43.478 0.00 0.00 0.00 5.07
2219 2453 2.551032 CCGGTACTTTTGGACCAAGTTC 59.449 50.000 7.07 0.85 35.95 3.01
2225 2459 0.318120 TCGACCGGTACTTTTGGACC 59.682 55.000 7.34 0.00 0.00 4.46
2272 2506 7.509659 ACCGATCTAGGGTTCATATTAGAGTTT 59.490 37.037 0.00 0.00 32.70 2.66
2275 2509 7.039644 ACAACCGATCTAGGGTTCATATTAGAG 60.040 40.741 0.92 0.00 45.74 2.43
2277 2511 6.994221 ACAACCGATCTAGGGTTCATATTAG 58.006 40.000 0.92 0.00 45.74 1.73
2278 2512 6.294342 CGACAACCGATCTAGGGTTCATATTA 60.294 42.308 0.92 0.00 45.74 0.98
2281 2515 3.317149 CGACAACCGATCTAGGGTTCATA 59.683 47.826 0.92 0.00 45.74 2.15
2282 2516 2.100916 CGACAACCGATCTAGGGTTCAT 59.899 50.000 0.92 0.00 45.74 2.57
2283 2517 1.475280 CGACAACCGATCTAGGGTTCA 59.525 52.381 0.92 0.00 45.74 3.18
2284 2518 1.801765 GCGACAACCGATCTAGGGTTC 60.802 57.143 0.92 0.00 45.74 3.62
2301 2561 4.047059 GACCAAGGACGACGGCGA 62.047 66.667 22.49 0.00 41.64 5.54
2307 2567 1.254026 ATGAAGACGACCAAGGACGA 58.746 50.000 17.14 0.00 37.09 4.20
2326 2586 3.945436 GGTGACGACGACATGCAA 58.055 55.556 0.00 0.00 0.00 4.08
2339 2599 1.215382 CGCATGAGGAAGACGGTGA 59.785 57.895 0.00 0.00 0.00 4.02
2341 2601 2.579201 CCGCATGAGGAAGACGGT 59.421 61.111 10.41 0.00 39.05 4.83
2420 2686 1.594833 GATACGTGGTCACAGCCCA 59.405 57.895 0.00 0.00 0.00 5.36
2423 2689 2.165301 GCCGATACGTGGTCACAGC 61.165 63.158 0.00 0.00 0.00 4.40
2518 2784 1.358759 GTGGAACTTGGCGTTGGTG 59.641 57.895 0.00 0.00 35.56 4.17
2536 2802 2.202440 CACGACACGGAGCTACGG 60.202 66.667 24.83 14.21 38.39 4.02
2537 2803 1.511464 GACACGACACGGAGCTACG 60.511 63.158 19.02 19.02 40.31 3.51
2538 2804 1.511464 CGACACGACACGGAGCTAC 60.511 63.158 0.00 0.00 0.00 3.58
2539 2805 2.865308 CGACACGACACGGAGCTA 59.135 61.111 0.00 0.00 0.00 3.32
2540 2806 4.702081 GCGACACGACACGGAGCT 62.702 66.667 0.00 0.00 0.00 4.09
2541 2807 4.702081 AGCGACACGACACGGAGC 62.702 66.667 0.00 0.00 0.00 4.70
2542 2808 2.502080 GAGCGACACGACACGGAG 60.502 66.667 0.00 0.00 0.00 4.63
2543 2809 4.034258 GGAGCGACACGACACGGA 62.034 66.667 0.00 0.00 0.00 4.69
2544 2810 3.553437 AAGGAGCGACACGACACGG 62.553 63.158 0.00 0.00 0.00 4.94
2545 2811 2.050351 AAGGAGCGACACGACACG 60.050 61.111 0.00 0.00 0.00 4.49
2546 2812 0.388649 ATGAAGGAGCGACACGACAC 60.389 55.000 0.00 0.00 0.00 3.67
2547 2813 0.109272 GATGAAGGAGCGACACGACA 60.109 55.000 0.00 0.00 0.00 4.35
2548 2814 0.171455 AGATGAAGGAGCGACACGAC 59.829 55.000 0.00 0.00 0.00 4.34
2549 2815 0.452184 GAGATGAAGGAGCGACACGA 59.548 55.000 0.00 0.00 0.00 4.35
2550 2816 0.526524 GGAGATGAAGGAGCGACACG 60.527 60.000 0.00 0.00 0.00 4.49
2551 2817 0.820871 AGGAGATGAAGGAGCGACAC 59.179 55.000 0.00 0.00 0.00 3.67
2552 2818 1.107114 GAGGAGATGAAGGAGCGACA 58.893 55.000 0.00 0.00 0.00 4.35
2553 2819 0.030101 CGAGGAGATGAAGGAGCGAC 59.970 60.000 0.00 0.00 0.00 5.19
2554 2820 0.107165 TCGAGGAGATGAAGGAGCGA 60.107 55.000 0.00 0.00 0.00 4.93
2555 2821 0.310543 CTCGAGGAGATGAAGGAGCG 59.689 60.000 3.91 0.00 0.00 5.03
2556 2822 0.031994 GCTCGAGGAGATGAAGGAGC 59.968 60.000 15.58 0.00 39.91 4.70
2557 2823 1.608590 GAGCTCGAGGAGATGAAGGAG 59.391 57.143 15.58 0.00 0.00 3.69
2558 2824 1.686355 GAGCTCGAGGAGATGAAGGA 58.314 55.000 15.58 0.00 0.00 3.36
2559 2825 0.673437 GGAGCTCGAGGAGATGAAGG 59.327 60.000 15.58 0.00 0.00 3.46
2560 2826 0.310543 CGGAGCTCGAGGAGATGAAG 59.689 60.000 15.58 0.00 42.43 3.02
2561 2827 1.103987 CCGGAGCTCGAGGAGATGAA 61.104 60.000 18.81 0.00 42.43 2.57
2562 2828 1.527148 CCGGAGCTCGAGGAGATGA 60.527 63.158 18.81 0.00 42.43 2.92
2563 2829 2.560119 CCCGGAGCTCGAGGAGATG 61.560 68.421 23.55 7.27 42.43 2.90
2564 2830 2.075355 ATCCCGGAGCTCGAGGAGAT 62.075 60.000 23.55 19.87 39.99 2.75
2565 2831 2.758207 ATCCCGGAGCTCGAGGAGA 61.758 63.158 23.55 18.84 39.99 3.71
2566 2832 2.203422 ATCCCGGAGCTCGAGGAG 60.203 66.667 23.55 15.22 39.99 3.69
2567 2833 2.519541 CATCCCGGAGCTCGAGGA 60.520 66.667 23.55 22.65 42.43 3.71
2568 2834 3.610669 CCATCCCGGAGCTCGAGG 61.611 72.222 15.58 17.19 42.43 4.63
2569 2835 2.835431 ACCATCCCGGAGCTCGAG 60.835 66.667 8.45 8.45 42.43 4.04
2570 2836 3.147595 CACCATCCCGGAGCTCGA 61.148 66.667 0.73 0.00 42.43 4.04
2571 2837 3.147595 TCACCATCCCGGAGCTCG 61.148 66.667 0.73 3.03 38.63 5.03
2572 2838 2.501610 GTCACCATCCCGGAGCTC 59.498 66.667 0.73 4.71 38.63 4.09
2573 2839 3.461773 CGTCACCATCCCGGAGCT 61.462 66.667 0.73 0.00 38.63 4.09
2574 2840 3.718210 GACGTCACCATCCCGGAGC 62.718 68.421 11.55 0.00 38.63 4.70
2575 2841 2.494918 GACGTCACCATCCCGGAG 59.505 66.667 11.55 0.00 38.63 4.63
2576 2842 3.445687 CGACGTCACCATCCCGGA 61.446 66.667 17.16 0.00 38.63 5.14
2577 2843 3.695022 GACGACGTCACCATCCCGG 62.695 68.421 22.66 0.00 42.50 5.73
2578 2844 2.202570 GACGACGTCACCATCCCG 60.203 66.667 22.66 1.54 32.09 5.14
2579 2845 2.001361 ATCGACGACGTCACCATCCC 62.001 60.000 26.26 0.00 40.69 3.85
2580 2846 0.866061 CATCGACGACGTCACCATCC 60.866 60.000 26.26 0.00 40.69 3.51
2581 2847 0.866061 CCATCGACGACGTCACCATC 60.866 60.000 26.26 6.23 40.69 3.51
2582 2848 1.138883 CCATCGACGACGTCACCAT 59.861 57.895 26.26 12.58 40.69 3.55
2583 2849 2.564458 CCATCGACGACGTCACCA 59.436 61.111 26.26 10.84 40.69 4.17
2584 2850 2.879462 GCCATCGACGACGTCACC 60.879 66.667 26.26 5.23 40.69 4.02
2585 2851 2.879462 GGCCATCGACGACGTCAC 60.879 66.667 26.26 7.98 40.69 3.67
2586 2852 4.470170 CGGCCATCGACGACGTCA 62.470 66.667 26.26 14.41 42.43 4.35
2587 2853 4.170062 TCGGCCATCGACGACGTC 62.170 66.667 18.04 18.04 43.74 4.34
2601 2867 1.430632 GTGCAGATGCCATTGTCGG 59.569 57.895 1.72 0.00 41.18 4.79
2602 2868 1.061411 CGTGCAGATGCCATTGTCG 59.939 57.895 1.72 0.00 41.18 4.35
2603 2869 0.097674 GACGTGCAGATGCCATTGTC 59.902 55.000 0.00 1.78 41.18 3.18
2604 2870 0.606130 TGACGTGCAGATGCCATTGT 60.606 50.000 0.00 0.00 41.18 2.71
2605 2871 0.522626 TTGACGTGCAGATGCCATTG 59.477 50.000 0.00 0.00 41.18 2.82
2606 2872 0.806868 CTTGACGTGCAGATGCCATT 59.193 50.000 0.00 0.00 41.18 3.16
2607 2873 1.028330 CCTTGACGTGCAGATGCCAT 61.028 55.000 0.00 0.00 41.18 4.40
2608 2874 1.672030 CCTTGACGTGCAGATGCCA 60.672 57.895 0.00 0.00 41.18 4.92
2609 2875 3.044059 GCCTTGACGTGCAGATGCC 62.044 63.158 0.00 0.00 41.18 4.40
2610 2876 2.482374 GCCTTGACGTGCAGATGC 59.518 61.111 0.00 0.00 42.50 3.91
2611 2877 2.743752 CGGCCTTGACGTGCAGATG 61.744 63.158 0.00 0.00 0.00 2.90
2612 2878 2.434884 CGGCCTTGACGTGCAGAT 60.435 61.111 0.00 0.00 0.00 2.90
2619 2885 3.530910 AAGTGGGACGGCCTTGACG 62.531 63.158 7.57 0.00 41.40 4.35
2620 2886 1.966451 CAAGTGGGACGGCCTTGAC 60.966 63.158 7.57 1.12 38.23 3.18
2621 2887 2.144078 TCAAGTGGGACGGCCTTGA 61.144 57.895 7.57 6.85 41.55 3.02
2622 2888 1.966451 GTCAAGTGGGACGGCCTTG 60.966 63.158 7.57 3.86 37.51 3.61
2623 2889 2.430367 GTCAAGTGGGACGGCCTT 59.570 61.111 7.57 0.00 0.00 4.35
2634 2900 1.286260 GAGTCCGAGCACGTCAAGT 59.714 57.895 2.18 0.00 37.88 3.16
2635 2901 1.797933 CGAGTCCGAGCACGTCAAG 60.798 63.158 2.18 0.00 38.22 3.02
2636 2902 2.254350 CGAGTCCGAGCACGTCAA 59.746 61.111 2.18 0.00 38.22 3.18
2637 2903 2.667199 TCGAGTCCGAGCACGTCA 60.667 61.111 2.18 0.00 40.30 4.35
2638 2904 2.202324 GTCGAGTCCGAGCACGTC 60.202 66.667 2.18 0.00 46.52 4.34
2651 2917 3.744719 CAAGGACTCGGCGGTCGA 61.745 66.667 17.88 4.05 46.77 4.20
2652 2918 3.685214 CTCAAGGACTCGGCGGTCG 62.685 68.421 17.88 0.00 37.12 4.79
2653 2919 2.182030 CTCAAGGACTCGGCGGTC 59.818 66.667 16.77 16.77 35.66 4.79
2654 2920 4.070552 GCTCAAGGACTCGGCGGT 62.071 66.667 7.21 3.45 0.00 5.68
2655 2921 4.069232 TGCTCAAGGACTCGGCGG 62.069 66.667 7.21 0.00 0.00 6.13
2656 2922 2.811317 GTGCTCAAGGACTCGGCG 60.811 66.667 0.00 0.00 33.32 6.46
2657 2923 2.435059 GGTGCTCAAGGACTCGGC 60.435 66.667 1.60 0.00 36.56 5.54
2658 2924 0.390472 GAAGGTGCTCAAGGACTCGG 60.390 60.000 1.60 0.00 36.56 4.63
2659 2925 3.129792 GAAGGTGCTCAAGGACTCG 57.870 57.895 1.60 0.00 36.56 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.