>input_sequence_72022
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-----------------------------------------------------------------------------ATG
GGGAAGAAGAAGAGCGG---CGGCAACGGCGGCGGGGAGAAGGTGGTGGCGGTGGCGGCGAGGGAGTTCGCGCTGAAGGT
GGCGATGCACTGCAAGTGCCACGGGTGCACGGACAGGCTGCGCGCCGCGGTGCGGGACCTCACGCTGGCGCCCGGCGTCG
AGGCGGTGGACCAGACCGCGGCCGAGGCCACCGGCGAGGTGCGCGTGCTCGCCACGGCCGACCCCGAGCGGCTCCGCAAG
GCCCTCCGCAAGGCCACCGGCAAGAAGGTCGACCTCGTCTTCCCGCCCGCCAAGGAGCGCAAGAAGGGGGA---------
---------CGCCGACGCCGCCGCGGTCCAGGCGCTGCTCGCCGACCTGCAGCTGCACCACCAGTACGGGGGCCAGGCCG
CGGCGCGTTACCAGTACGGGGGACAGGGCGCCGCG---------TGGGCCGCGAGCCAGCAGCACCAGCAGCAGCTGCTC
GGCCTCGGCGGCGGGTGGAATGGA---GCCGGTGCTGGGGGCTACGGCGCGGCGTACCCGTGGCAGCCCTCCTCTGCGGC
CTCCTACTACCCGGCTGCGCCCGCCGCTGGTGCTGGTTGGGGCGCGTACGGCGGCTACGGGTACGCTCCTCAGGCGCAGG
CCCCGTCCCAGGGCCACGGCGGCTACTACGGCGCGAGCTCGCCGGCGTGGCACGGCCAGGGCTACTGA------------
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>chr6D_1_TraesCS6D01G379200
AGGAACTTTTTAGTACCAGAGACTAGAAAAAGTCCCTAAAAAGTCTTTAGAAACCAAACAGGAGGGACTTTTTCTACAGG
GACTAATAGAGTCTTTTTTATTAGTCGTAGGACTTCTGAACCAAACACCCCTCGTTTTGCTTGCCTGCGGTCCTTCTCTC
TCACTCTCAGAAAGGAGATTATCTTTTTCGCTTTAGGGCTGTCAGAGAGATAGGGGACATTGGTTAAGGTGGTCTAAG--
-CCTTTTTTGCCAGTCTGTTGCTCTCATGGAGCTGCATTGTGAGGAGAGCTGCTATCGACCTATCATTTCTACGATCTGT
ACTA----------CAGTGGTTGATTTCAGTATGGCCAAGTAGCACTCCATACTCTAAAAATGTACCTGTACC-------
---TGCTACGTCCACGAGTTGTCAATTTTCAGTACGTTTGATGA---AGCAGCACTCCATACTGTAAATAGACCATGCAT
GCTTCACGTTCAGAGTTTGGAAATTGTGTGCGCTGCTGCCGCTGCTGTTGCGTTCCTTCCCAACGAAGGAACCGATGGAT
CCACCCCGCGGACCGGCGGTCAAAGACCAGACCTCTCTCTCTCCACTCCACTCCACTGAGCTGGCTGCGCGGCACCGCAG
TGCACCCCC--------------------CTACCTAGCTAGCAGAGTGAGCTGAGTGAGTA---------GTCACC---T
CACAAATCAAAATCACGTCGGACCGGACCGGACCGGACGGCGACAGATGAGCTACTCCAGCGTACGTACACGGAAATCTC
CGTCGCGTGGCGCCCGGTTTGCTTGCCCCTCCGGTTGACTGG-CCGGCCGTGACCGACCTTGACCCGCCGGTCCACAC--
-TCCACACTCACGCGCCCACGCTCTGTC-------------TCCCATCGCACGCGGCCGC---------------TCCGC
TATATAAT----------------CCCGCCCCGGCGCTCCTCGTTCCGCCACACTTCCATCCACTCCCCTGCTTCCTCAT
TTGCTCAAGTTTCTTTCAGCTCGTTCG-----------GTTTGTGTGTGAGAGAGAGACAGAGTAGCCTGCCTTGCCATG
GGGAAGAAGAAGAGCGG---CGGCAACGGCGGCGGGGAGAAGGTGGTGGCGGTGGCGGCGAGGGAGTTCGCGCTGAAGGT
GGCGATGCACTGCAAGTGCCACGGGTGCACGGACAGGCTGCGCGCCGCGGTGCGGGACCTCACGCTGGCGCCCGGCGTCG
AGGCGGTGGACCAGACCGCGGCCGAGGCCACCGGCGAGGTGCGCGTGCTCGCCACGGCCGACCCCGAGCGGCTCCGCAAG
GCCCTCCGCAAGGCCACCGGCAAGAAGGTCGACCTCGTCTTCCCGCCCGCCAAGGAGCGCAAGAAGGGGGA---------
---------CGCCGACGCCGCCGCGGTCCAGGCGCTGCTCGCCGACCTGCAGCTGCACCACCAGTACGGGGGCCAGGCCG
CGGCGCGTTACCAGTACGGGGGACAGGGCGCCGCG---------TGGGCCGCGAGCCAGCAGCACCAGCAGCAGCTGCTC
GGCCTCGGCGGCGGGTGGAATGGA---GCCGGTGCTGGGGGCTACGGCGCGGCGTACCCGTGGCAGCCCTCCTCTGCGGC
CTCCTACTACCCGGCTGCGCCCGCCGCTGGTGCTGGTTGGGGCGCGTACGGCGGCTACGGGTACGCTCCTCAGGCGCAGG
CCCCGTCCCAGGGCCACGGCGGCTACTACGGCGCGAGCTCGCCGGCGTGGCACGGCCAGGGCTACTGATCGGT-------
--------CGACCGAGCCGACCGCGCGG-CCGGAGACGGGCGAGTACGTCGGATCATCATACCGGATCGCCAGACGACGA
TGGCATATA---CATATGCGTACTCCTTTTGTACTAGC--------AGTATTATATCTCAGTTCAGTTAATTGTTG----
-GTAGCAATCGGCCGGATGATCGGGTAGTGGTAGTAGTAG------CTGTGATCGATACTGAATCCAGGGAGCAGATATA
GTACTGCTTCCTTTGCTCTTTGTTCATGTATATTTTGCGGTTGAGAGATTGTTGGAGTTCCCTATGCTATGCGTATGAAT
GAAAATCGTTGGAGTTTCTAC---ACTTGCTTCACTGTCGTCGTTTTCTTGTGTCCAAAGTTTTGTTGTCCTGTCCTG--
---TCCGGAGGCCCAGCAGAGAAAGACAGCACGTAGGT--------CCCTGAAACGATTTGAACCCTCCCC-CTTCTTCC
CCTCTTTCTCCATCGATCGAACAGTCACGGGCATGT----------------------------CCAACTCCAACGCTTG
ACCTACATTTCTTAGCAAAAAAGGCACAGACTTCAACTTAAACTAATAAATTGAACTTGGTCCAAAAGTACCGGTCGAAT
TATATATCCATCATACATTTGATATAAACTCTAATATG--------------------------AACCCTAGATCGGTTG
TCGCCGTCGTCCTTGGTCGTCTTCATTGCATGTCGTCGTCACCGTCTTCCTCATGCGGTGGCGCCTGCGACCGCTGCGGT
GGTTGCACTGCAAGGGTCGCGGCGCCTGC------ATTGGCACGATGGGCTGTGACCACGTATCGGCCCCTGCCTATACG
GCTCCCGCCCCCTACTCCGGCGGCCGTGATGGCCACCATCGTAGTCCACGTCCAGTACTGGTCCACCAACGCCAAGTTCC
ACCGTAGCTCCGTGTCGTGTCGCTCCTTCATCTCCTCGAGCTCCGGGATGGTGACGTCGTCGATGGCCGACAATGGCATC
TGCACGTCAAGGCCGTCCCACTTGACGTGCTCGGACTCGACCGCCGAGTCCTTGAGCACCTTC
>chr6B_164
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---CTCTGAGAAAGGAGATTATCTTTTTCGCTTTAGGGTTGTCAGAAAGATAGGGGGCATTGGTTAAGGTCGTCTAAGGG
CCCTTTTTTGTTTGCCTGTTGCTCTGATGGAGGTGCATTTGT----GAGCTGCTATCAACCTATCATTTCTACAGTTTGT
ACAACTGCTTCTACCAGTGGTTGATTTCAGTATGGCCAAGTAGCACTCCGTACCCTGAAAACGTACGTGCCTACCTGCTA
CCGTGCTACGTGAACGAGTGGTCAATTTTCAGTACGTTTGATGA---AGCAGCACTCCATACCCTAAATAGACCATGCAT
GCTTCACGTTCAGAGTTGGGAAATTGTGT--GCTGCTGCTGCTGTTGCCGCGTTCCTTCCCAACGAAGGAACTGATGGAT
CCACCACGCGGACCGGCGGTCAAAGACCAGACCCCTCTCTC--CACTCCA-----CTGAGCTGTCTGCGCAGCACCGCAG
TGCAGCCCGTGCATGCATGAGCTAGCTAGCTAGCTAGCTAGCAGAGTGAGCTGAGTGAGCTACGTGAGTGGTCACC---T
CACAGATCAAAATCACGTCGGACCGGACC----CGGACGGCGACAGATCAGCTACTCGAGCGTACGTACACGGAAAGCTC
CGTCGCGTCGCGCCCGGTTTGCTTGCCGGCCCCGGTTGACCGCCCGGCCGTGACCGGCCTTGACCCGCCGGTCCACAC--
-TCCACA--------------CTCTGTC-------------TCCCATCGCACGCGGCCAC---------------TCCGC
TAGCTCATCTCCTCGGCTATATAGCCCGGCCCGGCGCTCCTCGTTTCGCCACACTTCCATCCACTCCCCTGCTTCCTCAT
TAGCTCAAGTTTCTTTCAGCTCCCCCTATTGTGCCTGTG--TGTGTGTGAGAGAGAGACAGAGTAGCCT----TGCCATG
GGGAAGAAGCAGAGCGGCAACGGC------GGCGTGGAGAA---------GGTGGCGGCAAGGGAGTTCTCGCTCAAGGT
GGCGATGCACTGCCGGTGCCACGGGTGCACGGACAAGCTGCGCGCGGCGGTGCGGGACCTCACGCTGGCGCCGGGGGTCG
AGGCGGTGGACCAGGCCGCGGCCGAGGCCACGGGCGAGGTGCGCGTGCTGGCCACGGCCGACCCCGAGCGGCTCCGCAAG
GGCCTCCGCAAGGCCACCGGCAAGAAGGTGGACCTCGTCTTCCCGCCCGCCAAGGAGCGCAGGAAGGGGGAGGGGGAGGA
CGCCCGGGCCGCCGACGCCGCCGCCGTCCAGGCCCTGCTCGCCGACCTGCAGCTGCACCACCAGTACGGGGGCCAGGCGG
CGGCGCGTCACCAGTACGGGGGCCAGGGCGCCGCGGCCGCCGCGTGGGCGGCCAGCCAGCAGCACCAGCAGCAGCTGCTC
GGCCTCGGGGGCGGGTGGAACGGCGGCGGTGCTGCCGGGGGCTACGGCGCGGCGTACCCGTGGCAGCCCTCCTCTGCGGC
CTCCTACTACCCGGCTGCGCCCGCCGCTGGTGCTGGTTGGGGCGCGTACGGCGGCTACGGGTACGCTCCTCAGGCGCAGG
CTCCGGCCCAGGGCCACGGCGGCTACTACCGCGCCAGCTCGCCGGCGTGGCACGGCCAGGGCTACTGATCGGT-------
--------CGACAGTGTGTGACCGCTCGACGTGGG--------------------ATCATACCGGAGCAGCAGATGACGA
TGGCATACACTCCATATGCGTACTCCTTTTGTGGTACTAGTAGACTAGTAGCATATCTCAGTTCAGTTAAGTTAATTGGT
AGTAGCAATCGGCCGGATGATCGAGCGGTGGTAGTAGTAG------CAGCGATCGATGCTAAATCCAGGGAGCAGATATA
CTACTGCTTCCTTTGTTCTTCGTTCATGTATATTTTGCGGTTGAGTGATT----GAGTTCCCTATATATGCAT-----AT
GAAAATCCTTGGAGTTTCTACTGAAGTTGCTTCACTGTCGTCGTTTTCTTGTGTCCAAAGTTTTGTTGTCCTGTCCTGTC
CTGTCCGGAGGTCCAGCAGAGAAAGATACTCCCCCTTCTCCCCTGACCCTGGAACGATTAGGACCCTTCCCCCTTCTTCC
CCTCTCTCTCCATCGATCGAACAGTCACGGGCGTGTTGTGAATTTGAGATGGTACACGGTAAGCCCAACTCCTGCGCTTC
ACCTAAATTTCATAGCAAAAAAGGCATAAACTTAAACTTAAACTAATAAATTTAACTTAGTCCAAAAGTACCGGTTGAAT
----TATCCATCATACATTTAACTTGAAATTAAACTAAAAACATTTTTAAAAAACTTTAATACAAACCCTTAACCGGTTG
CCGCCGCCGTCCTTGGCCGTCTTTACTGCCTGTCGTCGCCGCCGTCTTCCTCGTCCGGTGGCGCCTGCAACCGCTGCGGT
GGTTGCCCTGCAGGGGCCGCGGCGCCTGCATTTGCATTGGCACGAGGGCCTGTGACCACGTATCGGCCCCTACCCACACG
GCTCCCGCCACCAACTTCGGCGCCCGTGATGGCCACCATCGTAGTCCACGTCCAGTACTGGTCTACCAACGCCAAGTTCC
A-------------------------------------------------------------------------------
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>chr6A_368
ATATACCTAC----------------------------------------------------------------------
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---------------------------------------------------------------------TACT-------
---TGCTACGTGAACGAGTGGTCAATTTTCGGTACGTGTGAAGCAGGAGCAGCATTCCATACTGTAAATAGACCATGCTG
----CACGTTCAGGGTTTGGAAATTGTGT--GTGTGTT-------------GTTCCTTCCCAACGAGGGAACCGATGGAT
CCCCCCCGCGGACCGGCGGTCAAAGAGCAGACCTCTCTCTC--CACTCCAGTCAGCTGAGCTGGGTCTGCAGTGCATGGC
AGC----------------------------AGCTAGCTAGCAGAGTGAGCTGAGTGAGCTACGTGAGTAGTCACCTCAT
CACAAATCAAAATCACGTCGGACCGGACC-----GGACGGCGACAGATGAGCTACTCCAGCGTACCAACACGGAAAGCTC
CGTCGCGTCCCACCCGGTTTGCTCCGGT----------------------TGACTCGCCTTGACCCGCCGGTCCATGTCC
ATCCATACTCACGCGCCCGCCCACACTCCTCTCTCCCACAGTCCCACTCCACGCGGCCGCGGCTGCTACTCCCCGTCGGC
TATATAAC----------------CCCGCCCCGGCGCTCCTCGTTCCACCACACTTCCATCCACTCCCCTGCTTCCTCAT
TAGCACCACTTTCTTTCAGCTCGTTCG-----------G--TGTGTGTTTGCGAGAGACAGAGTAGTCTGCC-TGCCATG
GGGAAGAAGCAGAGCAG---CGGC------GGCGTGGAGAA---------GGTGGCGGCGAGGGAGTTCTCGCTGAAGGT
GGCCATGCACTGCAAGTGCCACGGGTGCACGGACAGGCTGCGCGCGGCGGTGCGGGACCTCACGCTGGCGCCCGGGGTGG
AGGCGGTGGACCAGACCGCGGCCGAGGCCACCGGCGAGGTGCGCGTGCTGGCCACGGCCGACCCCGAGCGGCTCCGCAAG
GCCCTCCGCAAGGCCACGGGCAAGAAGGTCGACCTTGTCTTCCCGCCTGCCAAGGAGCGCAAGAAGGCGGA---------
---------CGTCGACGCCGCCGCGGTCCAGGCCCTGCTCGCCGACCTGCAGCTGCACCACCAGTACGGGGGCCAGGCGG
CGGCGCGTCA---GTACGGCGGGCAGGG------------CGCGTGGGCGGCGAGCCAGCAGCACCAGCAGCAGCTGCTC
GGCCTCGGCGGCGGGTGGAACGGCGGCGCCGGGGCCGGGGGCTACGGCGCGGCGTACCCGTGGCAGCCCTCCTCTGCGGC
CTCCTACTACCCGGCTGCGCCCGCCGCTGGTGCTGGTTGGGGCGCGTACGGCGGCTACGGGTACGCTCCTCAGGCGCAGG
CTCCGGCCAAGGGCCACGGCGGCTACTACGGCGCGAGCTCGCCGGCGTGGCACGGCCAGGGCTACTGATCGGTGCGCGCG
CTCCGCGTCGACCGAGCCGACCGCGCGGGCCGGAGACGGGCGAGCACGTGGGATCGTCATACCGGAGCACCTGACGACGA
TGGCATATA---CATATGCGTACTCCTTTTGTGCTAGC--------AGTAGTATATCTCAGTTCAGTTAATC--------
AGTAGCAATCGGGCGGTTGATCGAGCAGTGGTAGTAGTAGTAGCAGCAGTGATCGATACTGAATCCAGGGAGCAGATATA
GTACTGCTTCCTTTGCTCTTTGTTCATGTATATTTTCGC-TTGAGTGGTT----TAGTTCCCTATATATGCAT-----AT
GAAAATCGTCGGAGTTTCTACTGCACCTGCTTCACTGCCGTCGTTTTCTTGTGTCCAAAGTTCTGTTGCCCTGTCCTGT-
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>SNPs
-SSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----S------------------------------S-------S---------S-------------S---------
----------SSS-S----------S------S------SSSSSSS-----------S---------------SS-S---
--S----------------------------------------------S---S--S----S----S-----S-------
-----------SS------S------------------------------------------------------------
-----------------------------SS--------S----S--SS-------------------------------
-----------------------------------------SS-------S--SS---------------S---------
----S---S-----------------------S--------------------------SS-------------------
-----------------------------SSSS-------------------------------------------S---
--------S------------------SSS--S-S-SSSSS---------------S-----------------------
------------------S-S-----------------------------------------------------------
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-S-------------------------------------SS-------------------------------S-------
---------S--------------SSSSSS----S------SSSSSSSSS-------------------S----------
---------------------------------------------S-----------------------------S----
-------------------------------------------------S------------------------------
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---------------------------------S--------------------------------------------S-
--------S-------------S--------------------------S------------------------------
--------------------S--S-----------S--------------------------------------------
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-S---S--------------------------------------------------------------------------
--------------------------------------------S----S----------------S-S-----------
--------------------------------S-----------------S---------------------SSSS----
-----------------------S-S---------------------S--------------------------------
---------------------------------------------S----SSSS-----------SSSSSSSSSSSSS--
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-----------S--------------S-SSS-SSSSSS-------------S-------S-S-----S------------
-----S--------------------------S---------------------------------------SS-----S
-----S-----S--------------S-S----S------------------S-----S----------------S----
SSSS----------------S-SS-S--S-SS--SSSS--------------------------------SS-S------
S-----S---------S------S-S---S--------S-S-----------S-S-------------S-----------
------S-----S---S----------------------------S--S----------------------S--S-S---
---------S--S---S-----S----------------------------------------S----------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_134
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----------------------------------TCTGAACCAAACACCCCTCG--------------------------
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>reverse_2252
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-----------CCCAGCAGAGAAAGACAGCA-------------------------------------------------
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