Multiple sequence alignment - TraesCS6D01G370200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G370200 chr6D 100.000 3025 0 0 1 3025 456453135 456456159 0.000000e+00 5587.0
1 TraesCS6D01G370200 chr6D 85.671 328 38 5 426 751 11915454 11915134 1.340000e-88 337.0
2 TraesCS6D01G370200 chr6D 85.106 329 39 6 426 752 436238085 436237765 8.090000e-86 327.0
3 TraesCS6D01G370200 chr6D 91.892 74 5 1 1579 1651 456454639 456454712 5.340000e-18 102.0
4 TraesCS6D01G370200 chr6D 91.892 74 5 1 1505 1578 456454713 456454785 5.340000e-18 102.0
5 TraesCS6D01G370200 chr6B 84.360 1413 114 66 1599 2954 694116323 694117685 0.000000e+00 1286.0
6 TraesCS6D01G370200 chr6B 85.479 606 57 16 878 1464 694115678 694116271 1.200000e-168 603.0
7 TraesCS6D01G370200 chr6A 91.327 761 54 7 2051 2804 603183553 603184308 0.000000e+00 1029.0
8 TraesCS6D01G370200 chr6A 87.595 661 59 12 819 1468 603182405 603183053 0.000000e+00 745.0
9 TraesCS6D01G370200 chr6A 89.953 428 29 3 1 427 603179294 603179708 9.540000e-150 540.0
10 TraesCS6D01G370200 chr6A 79.688 384 20 29 1606 1957 603183111 603183468 1.090000e-54 224.0
11 TraesCS6D01G370200 chr1A 88.286 350 40 1 1 349 299264163 299263814 4.660000e-113 418.0
12 TraesCS6D01G370200 chr3A 88.415 328 32 4 426 752 681520448 681520126 1.020000e-104 390.0
13 TraesCS6D01G370200 chr3A 90.455 220 20 1 1 219 435358112 435358331 3.820000e-74 289.0
14 TraesCS6D01G370200 chr7B 83.163 392 38 12 1087 1468 27212066 27212439 1.740000e-87 333.0
15 TraesCS6D01G370200 chr4B 87.719 285 19 5 1086 1370 24954734 24955002 4.870000e-83 318.0
16 TraesCS6D01G370200 chr4B 96.471 85 1 2 2941 3025 643783852 643783934 4.070000e-29 139.0
17 TraesCS6D01G370200 chr5B 86.897 290 27 4 466 751 539259159 539258877 6.300000e-82 315.0
18 TraesCS6D01G370200 chrUn 83.841 328 45 4 426 752 51477657 51477337 3.790000e-79 305.0
19 TraesCS6D01G370200 chrUn 83.841 328 45 4 426 752 322555077 322554757 3.790000e-79 305.0
20 TraesCS6D01G370200 chr1D 91.364 220 18 1 1 219 413777679 413777460 1.760000e-77 300.0
21 TraesCS6D01G370200 chr1D 91.626 203 16 1 1 202 104294392 104294594 2.300000e-71 279.0
22 TraesCS6D01G370200 chr1D 91.111 90 7 1 261 350 104294593 104294681 1.470000e-23 121.0
23 TraesCS6D01G370200 chr7D 82.941 340 48 6 426 763 1104181 1104512 6.340000e-77 298.0
24 TraesCS6D01G370200 chr7D 95.506 89 2 2 2938 3025 616006529 616006616 1.130000e-29 141.0
25 TraesCS6D01G370200 chr4A 89.640 222 18 4 1 219 16260603 16260384 8.260000e-71 278.0
26 TraesCS6D01G370200 chr3D 84.375 288 35 5 426 710 544442843 544442563 1.070000e-69 274.0
27 TraesCS6D01G370200 chr4D 87.603 242 20 5 490 728 8990278 8990512 3.840000e-69 272.0
28 TraesCS6D01G370200 chr4D 94.505 91 3 2 2936 3025 465765353 465765264 4.070000e-29 139.0
29 TraesCS6D01G370200 chr2B 100.000 78 0 0 2948 3025 268813643 268813566 8.740000e-31 145.0
30 TraesCS6D01G370200 chr2B 96.429 84 3 0 2942 3025 5009147 5009064 4.070000e-29 139.0
31 TraesCS6D01G370200 chr2A 98.765 81 0 1 2945 3025 597850415 597850494 3.140000e-30 143.0
32 TraesCS6D01G370200 chr2A 97.561 82 1 1 2944 3025 407739273 407739193 4.070000e-29 139.0
33 TraesCS6D01G370200 chr1B 97.590 83 2 0 2943 3025 623737705 623737787 3.140000e-30 143.0
34 TraesCS6D01G370200 chr2D 96.471 85 2 1 2941 3025 22958382 22958465 4.070000e-29 139.0
35 TraesCS6D01G370200 chr3B 100.000 28 0 0 429 456 146180994 146180967 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G370200 chr6D 456453135 456456159 3024 False 1930.333333 5587 94.594667 1 3025 3 chr6D.!!$F1 3024
1 TraesCS6D01G370200 chr6B 694115678 694117685 2007 False 944.500000 1286 84.919500 878 2954 2 chr6B.!!$F1 2076
2 TraesCS6D01G370200 chr6A 603179294 603184308 5014 False 634.500000 1029 87.140750 1 2804 4 chr6A.!!$F1 2803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.035630 AAGCTCTCCGCATTTGCTCT 60.036 50.0 0.51 0.0 42.61 4.09 F
138 139 0.103755 TCATCTGCATCGCACTCTCC 59.896 55.0 0.00 0.0 33.79 3.71 F
754 786 0.108585 CACCAGATATTCACCCCCGG 59.891 60.0 0.00 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 4435 0.035881 GCTGCTATGGCCTATGAGCA 59.964 55.000 16.87 16.87 42.47 4.26 R
1981 4436 0.676151 GGCTGCTATGGCCTATGAGC 60.676 60.000 3.32 8.06 45.57 4.26 R
2038 4496 1.132453 GCATCTCCTTGTAAAACCGGC 59.868 52.381 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.274645 CCAAGCAAACGCCCCATCA 61.275 57.895 0.00 0.00 0.00 3.07
57 58 3.863681 CCGTGTTGGTGGTTGATTG 57.136 52.632 0.00 0.00 0.00 2.67
79 80 0.248296 CTACGAGTGAAGCTCTCCGC 60.248 60.000 0.00 0.00 41.98 5.54
80 81 0.958876 TACGAGTGAAGCTCTCCGCA 60.959 55.000 0.00 0.00 41.98 5.69
81 82 1.140589 CGAGTGAAGCTCTCCGCAT 59.859 57.895 0.00 0.00 41.98 4.73
82 83 0.459237 CGAGTGAAGCTCTCCGCATT 60.459 55.000 0.00 0.00 41.98 3.56
83 84 1.731720 GAGTGAAGCTCTCCGCATTT 58.268 50.000 0.00 0.00 42.61 2.32
84 85 1.396301 GAGTGAAGCTCTCCGCATTTG 59.604 52.381 0.00 0.00 42.61 2.32
85 86 0.179179 GTGAAGCTCTCCGCATTTGC 60.179 55.000 0.00 0.00 42.61 3.68
86 87 0.321919 TGAAGCTCTCCGCATTTGCT 60.322 50.000 0.51 0.00 42.61 3.91
87 88 0.376502 GAAGCTCTCCGCATTTGCTC 59.623 55.000 0.51 0.00 42.61 4.26
88 89 0.035630 AAGCTCTCCGCATTTGCTCT 60.036 50.000 0.51 0.00 42.61 4.09
89 90 0.461693 AGCTCTCCGCATTTGCTCTC 60.462 55.000 0.51 0.00 42.61 3.20
90 91 1.435408 GCTCTCCGCATTTGCTCTCC 61.435 60.000 0.51 0.00 39.32 3.71
91 92 1.150567 CTCTCCGCATTTGCTCTCCG 61.151 60.000 0.51 0.00 39.32 4.63
92 93 2.125147 TCCGCATTTGCTCTCCGG 60.125 61.111 0.00 0.00 40.25 5.14
99 100 2.330924 ATTTGCTCTCCGGCTAGGCC 62.331 60.000 11.22 0.00 46.75 5.19
113 114 2.551856 TAGGCCTGTGCTCCCCTCAT 62.552 60.000 17.99 0.00 37.74 2.90
125 126 2.034878 TCCCCTCATCGTCTTCATCTG 58.965 52.381 0.00 0.00 0.00 2.90
130 131 2.725206 CTCATCGTCTTCATCTGCATCG 59.275 50.000 0.00 0.00 0.00 3.84
132 133 0.173255 TCGTCTTCATCTGCATCGCA 59.827 50.000 0.00 0.00 36.92 5.10
134 135 1.649664 GTCTTCATCTGCATCGCACT 58.350 50.000 0.00 0.00 33.79 4.40
137 138 1.859703 CTTCATCTGCATCGCACTCTC 59.140 52.381 0.00 0.00 33.79 3.20
138 139 0.103755 TCATCTGCATCGCACTCTCC 59.896 55.000 0.00 0.00 33.79 3.71
205 206 1.421485 CTTCATCACCGACGCTTGC 59.579 57.895 0.00 0.00 0.00 4.01
299 300 0.835971 TACTCCTGCACCTTCCAGCA 60.836 55.000 0.00 0.00 39.25 4.41
330 331 1.137086 GTTGCCGATTCTAGAGCCTCA 59.863 52.381 0.00 0.00 0.00 3.86
346 347 1.615116 CCTCAATTCCAGAGGCAGCAA 60.615 52.381 0.00 0.00 45.51 3.91
348 349 0.172803 CAATTCCAGAGGCAGCAAGC 59.827 55.000 0.00 0.00 44.65 4.01
367 369 3.070429 GCACATCTATGCCTTTTTCGG 57.930 47.619 0.00 0.00 39.86 4.30
377 379 1.003718 CTTTTTCGGAGGAGGCGGT 60.004 57.895 0.00 0.00 0.00 5.68
386 388 1.578206 GAGGAGGCGGTTGTGAAAGC 61.578 60.000 0.00 0.00 0.00 3.51
493 525 3.251972 TCGATCTGAGATCGAATGGACAG 59.748 47.826 36.67 12.35 46.01 3.51
499 531 3.070590 TGAGATCGAATGGACAGCATCAT 59.929 43.478 0.00 0.00 0.00 2.45
519 551 5.106948 ATCATGTGATGTGAACGAAAGTGTC 60.107 40.000 0.00 0.00 37.69 3.67
520 552 7.455836 ATCATGTGATGTGAACGAAAGTGTCA 61.456 38.462 0.00 0.00 37.69 3.58
521 553 8.698486 ATCATGTGATGTGAACGAAAGTGTCAT 61.698 37.037 0.00 0.00 37.69 3.06
532 564 4.766404 GAAAGTGTCATTTCGGGAATGT 57.234 40.909 8.80 0.00 44.46 2.71
533 565 5.121221 GAAAGTGTCATTTCGGGAATGTT 57.879 39.130 8.80 0.00 44.46 2.71
534 566 5.528870 GAAAGTGTCATTTCGGGAATGTTT 58.471 37.500 8.80 2.51 44.46 2.83
535 567 4.503741 AGTGTCATTTCGGGAATGTTTG 57.496 40.909 8.80 0.00 44.46 2.93
536 568 3.255642 AGTGTCATTTCGGGAATGTTTGG 59.744 43.478 8.80 0.00 44.46 3.28
537 569 3.254657 GTGTCATTTCGGGAATGTTTGGA 59.745 43.478 8.80 0.00 44.46 3.53
538 570 3.505680 TGTCATTTCGGGAATGTTTGGAG 59.494 43.478 8.80 0.00 44.46 3.86
539 571 3.088532 TCATTTCGGGAATGTTTGGAGG 58.911 45.455 8.80 0.00 44.46 4.30
540 572 1.917872 TTTCGGGAATGTTTGGAGGG 58.082 50.000 0.00 0.00 0.00 4.30
541 573 0.774908 TTCGGGAATGTTTGGAGGGT 59.225 50.000 0.00 0.00 0.00 4.34
542 574 0.774908 TCGGGAATGTTTGGAGGGTT 59.225 50.000 0.00 0.00 0.00 4.11
543 575 1.146152 TCGGGAATGTTTGGAGGGTTT 59.854 47.619 0.00 0.00 0.00 3.27
544 576 1.967779 CGGGAATGTTTGGAGGGTTTT 59.032 47.619 0.00 0.00 0.00 2.43
545 577 2.029380 CGGGAATGTTTGGAGGGTTTTC 60.029 50.000 0.00 0.00 0.00 2.29
546 578 2.301870 GGGAATGTTTGGAGGGTTTTCC 59.698 50.000 0.00 0.00 37.77 3.13
547 579 2.969262 GGAATGTTTGGAGGGTTTTCCA 59.031 45.455 0.00 0.00 45.34 3.53
548 580 3.582647 GGAATGTTTGGAGGGTTTTCCAT 59.417 43.478 0.00 0.00 46.22 3.41
549 581 4.775253 GGAATGTTTGGAGGGTTTTCCATA 59.225 41.667 0.00 0.00 46.22 2.74
550 582 5.247337 GGAATGTTTGGAGGGTTTTCCATAA 59.753 40.000 0.00 0.00 46.22 1.90
551 583 6.239743 GGAATGTTTGGAGGGTTTTCCATAAA 60.240 38.462 0.00 0.00 46.22 1.40
552 584 6.755542 ATGTTTGGAGGGTTTTCCATAAAA 57.244 33.333 0.00 0.00 46.22 1.52
571 603 9.559958 CCATAAAACATTCATACAAGACTTGTC 57.440 33.333 23.79 0.00 44.12 3.18
637 669 9.874205 AAATTTTAGGGATTGTACATTCATGTG 57.126 29.630 17.15 0.00 41.89 3.21
649 681 6.480981 TGTACATTCATGTGATGTGATGCTAG 59.519 38.462 20.31 0.00 41.89 3.42
651 683 2.476821 TCATGTGATGTGATGCTAGCG 58.523 47.619 10.77 0.00 0.00 4.26
717 749 6.432403 TTTTCAAAATTGGGAGCACCTAAT 57.568 33.333 5.94 5.94 46.76 1.73
749 781 3.838244 TGGTAGCACCAGATATTCACC 57.162 47.619 4.16 0.00 44.79 4.02
750 782 2.438021 TGGTAGCACCAGATATTCACCC 59.562 50.000 4.16 0.00 44.79 4.61
751 783 2.224548 GGTAGCACCAGATATTCACCCC 60.225 54.545 1.01 0.00 38.42 4.95
752 784 0.846693 AGCACCAGATATTCACCCCC 59.153 55.000 0.00 0.00 0.00 5.40
753 785 0.535102 GCACCAGATATTCACCCCCG 60.535 60.000 0.00 0.00 0.00 5.73
754 786 0.108585 CACCAGATATTCACCCCCGG 59.891 60.000 0.00 0.00 0.00 5.73
755 787 1.073199 CCAGATATTCACCCCCGGC 59.927 63.158 0.00 0.00 0.00 6.13
756 788 1.073199 CAGATATTCACCCCCGGCC 59.927 63.158 0.00 0.00 0.00 6.13
757 789 1.073706 AGATATTCACCCCCGGCCT 60.074 57.895 0.00 0.00 0.00 5.19
758 790 0.192566 AGATATTCACCCCCGGCCTA 59.807 55.000 0.00 0.00 0.00 3.93
759 791 1.203440 AGATATTCACCCCCGGCCTAT 60.203 52.381 0.00 0.00 0.00 2.57
760 792 0.991920 ATATTCACCCCCGGCCTATG 59.008 55.000 0.00 0.00 0.00 2.23
761 793 1.131303 TATTCACCCCCGGCCTATGG 61.131 60.000 0.00 0.00 0.00 2.74
780 1030 2.004017 GGGCGTGTAAATCAATGACGA 58.996 47.619 0.00 0.00 0.00 4.20
782 1032 2.534150 GGCGTGTAAATCAATGACGACG 60.534 50.000 0.00 0.00 0.00 5.12
808 1072 6.967199 GCGTTAATTTCTTCCACCAAAGATAG 59.033 38.462 0.00 0.00 35.30 2.08
830 3215 1.300620 GTTTGGAAACCCGCCTTGC 60.301 57.895 0.00 0.00 32.82 4.01
853 3238 0.748367 GAGGGAAACGGGCTCCATTC 60.748 60.000 2.62 0.00 34.34 2.67
905 3290 0.251916 TCCACGTCATCCCAATCCAC 59.748 55.000 0.00 0.00 0.00 4.02
911 3296 1.825191 CATCCCAATCCACAGCCCG 60.825 63.158 0.00 0.00 0.00 6.13
915 3300 2.047274 CAATCCACAGCCCGACGT 60.047 61.111 0.00 0.00 0.00 4.34
939 3324 4.373116 CCACACTCCCACCGTCGG 62.373 72.222 10.48 10.48 0.00 4.79
940 3325 3.612681 CACACTCCCACCGTCGGT 61.613 66.667 12.23 12.23 35.62 4.69
1027 3423 3.595173 TCACAAACACATATCCACCTCG 58.405 45.455 0.00 0.00 0.00 4.63
1164 3564 3.468326 TAAGCACGCCACACCAGCA 62.468 57.895 0.00 0.00 0.00 4.41
1178 3578 2.358003 AGCAGCCAACGCTCACTC 60.358 61.111 0.00 0.00 43.95 3.51
1191 3591 3.821600 ACGCTCACTCAACTCTTCTTCTA 59.178 43.478 0.00 0.00 0.00 2.10
1193 3593 4.856487 CGCTCACTCAACTCTTCTTCTAAG 59.144 45.833 0.00 0.00 0.00 2.18
1202 3602 6.374613 TCAACTCTTCTTCTAAGCATCTCGTA 59.625 38.462 0.00 0.00 0.00 3.43
1230 3632 0.827089 TGGTTGCTGGTTGTGATGGG 60.827 55.000 0.00 0.00 0.00 4.00
1370 3772 1.668101 GGACGGCAGAGATCCTCGTT 61.668 60.000 0.00 0.00 35.36 3.85
1375 3777 1.880340 CAGAGATCCTCGTTGCCGC 60.880 63.158 0.00 0.00 35.36 6.53
1376 3778 2.586357 GAGATCCTCGTTGCCGCC 60.586 66.667 0.00 0.00 0.00 6.13
1377 3779 4.514577 AGATCCTCGTTGCCGCCG 62.515 66.667 0.00 0.00 0.00 6.46
1424 3826 4.530857 GGGATGACGCCGACCCAG 62.531 72.222 0.00 0.00 41.72 4.45
1425 3827 3.771160 GGATGACGCCGACCCAGT 61.771 66.667 0.00 0.00 0.00 4.00
1427 3829 1.226888 GATGACGCCGACCCAGTAC 60.227 63.158 0.00 0.00 0.00 2.73
1464 3884 0.666274 CGTCGCCACAAGAGTAAGCA 60.666 55.000 0.00 0.00 0.00 3.91
1468 3888 1.195448 CGCCACAAGAGTAAGCACAAG 59.805 52.381 0.00 0.00 0.00 3.16
1471 3891 4.253685 GCCACAAGAGTAAGCACAAGATA 58.746 43.478 0.00 0.00 0.00 1.98
1472 3892 4.093556 GCCACAAGAGTAAGCACAAGATAC 59.906 45.833 0.00 0.00 0.00 2.24
1473 3893 5.237815 CCACAAGAGTAAGCACAAGATACA 58.762 41.667 0.00 0.00 0.00 2.29
1474 3894 5.877012 CCACAAGAGTAAGCACAAGATACAT 59.123 40.000 0.00 0.00 0.00 2.29
1475 3895 7.041721 CCACAAGAGTAAGCACAAGATACATA 58.958 38.462 0.00 0.00 0.00 2.29
1476 3896 7.010552 CCACAAGAGTAAGCACAAGATACATAC 59.989 40.741 0.00 0.00 0.00 2.39
1478 3898 6.452494 AGAGTAAGCACAAGATACATACGT 57.548 37.500 0.00 0.00 0.00 3.57
1479 3899 7.563888 AGAGTAAGCACAAGATACATACGTA 57.436 36.000 0.00 0.00 0.00 3.57
1480 3900 7.416022 AGAGTAAGCACAAGATACATACGTAC 58.584 38.462 0.00 0.00 0.00 3.67
1481 3901 7.066645 AGAGTAAGCACAAGATACATACGTACA 59.933 37.037 0.00 0.00 0.00 2.90
1486 3906 6.642540 AGCACAAGATACATACGTACATGATG 59.357 38.462 0.00 0.00 0.00 3.07
1487 3907 6.640907 GCACAAGATACATACGTACATGATGA 59.359 38.462 0.00 0.00 0.00 2.92
1488 3908 7.329471 GCACAAGATACATACGTACATGATGAT 59.671 37.037 0.00 0.00 0.00 2.45
1489 3909 8.642020 CACAAGATACATACGTACATGATGATG 58.358 37.037 0.00 0.00 35.49 3.07
1492 3912 6.808704 AGATACATACGTACATGATGATGCAC 59.191 38.462 0.00 0.00 32.14 4.57
1493 3913 4.692228 ACATACGTACATGATGATGCACA 58.308 39.130 0.00 0.00 32.14 4.57
1495 3915 2.971307 ACGTACATGATGATGCACACA 58.029 42.857 0.00 0.00 32.14 3.72
1498 3918 2.124277 ACATGATGATGCACACAGCT 57.876 45.000 0.00 0.00 45.94 4.24
1500 3920 3.203716 ACATGATGATGCACACAGCTAG 58.796 45.455 0.00 6.97 45.94 3.42
1504 3924 1.713597 TGATGCACACAGCTAGTTCG 58.286 50.000 0.00 0.00 45.94 3.95
1505 3925 1.000843 TGATGCACACAGCTAGTTCGT 59.999 47.619 0.00 0.00 45.94 3.85
1506 3926 1.656095 GATGCACACAGCTAGTTCGTC 59.344 52.381 0.00 0.00 45.94 4.20
1507 3927 0.387565 TGCACACAGCTAGTTCGTCA 59.612 50.000 0.00 0.00 45.94 4.35
1510 3930 2.286833 GCACACAGCTAGTTCGTCAAAA 59.713 45.455 0.00 0.00 41.15 2.44
1513 3933 4.449068 CACACAGCTAGTTCGTCAAAAGAT 59.551 41.667 0.00 0.00 0.00 2.40
1514 3934 5.633601 CACACAGCTAGTTCGTCAAAAGATA 59.366 40.000 0.00 0.00 0.00 1.98
1515 3935 5.634020 ACACAGCTAGTTCGTCAAAAGATAC 59.366 40.000 0.00 0.00 0.00 2.24
1517 3937 5.634020 ACAGCTAGTTCGTCAAAAGATACAC 59.366 40.000 0.00 0.00 0.00 2.90
1518 3938 5.633601 CAGCTAGTTCGTCAAAAGATACACA 59.366 40.000 0.00 0.00 0.00 3.72
1519 3939 5.634020 AGCTAGTTCGTCAAAAGATACACAC 59.366 40.000 0.00 0.00 0.00 3.82
1521 3941 5.907197 AGTTCGTCAAAAGATACACACAG 57.093 39.130 0.00 0.00 0.00 3.66
1522 3942 4.750098 AGTTCGTCAAAAGATACACACAGG 59.250 41.667 0.00 0.00 0.00 4.00
1525 3945 4.055360 CGTCAAAAGATACACACAGGACA 58.945 43.478 0.00 0.00 0.00 4.02
1526 3946 4.084537 CGTCAAAAGATACACACAGGACAC 60.085 45.833 0.00 0.00 0.00 3.67
1527 3947 4.814234 GTCAAAAGATACACACAGGACACA 59.186 41.667 0.00 0.00 0.00 3.72
1528 3948 5.050091 GTCAAAAGATACACACAGGACACAG 60.050 44.000 0.00 0.00 0.00 3.66
1529 3949 2.751166 AGATACACACAGGACACAGC 57.249 50.000 0.00 0.00 0.00 4.40
1557 3977 7.265693 GTGTTTGACACTGTTTTTCTTCTTC 57.734 36.000 4.06 0.00 45.27 2.87
1559 3979 7.061094 GTGTTTGACACTGTTTTTCTTCTTCTG 59.939 37.037 4.06 0.00 45.27 3.02
1563 3983 6.432783 TGACACTGTTTTTCTTCTTCTGGAAA 59.567 34.615 0.00 0.00 33.07 3.13
1564 3984 7.040062 TGACACTGTTTTTCTTCTTCTGGAAAA 60.040 33.333 0.00 0.00 38.93 2.29
1565 3985 7.315890 ACACTGTTTTTCTTCTTCTGGAAAAG 58.684 34.615 0.00 0.00 40.78 2.27
1566 3986 7.176690 ACACTGTTTTTCTTCTTCTGGAAAAGA 59.823 33.333 0.00 0.00 40.78 2.52
1567 3987 8.193438 CACTGTTTTTCTTCTTCTGGAAAAGAT 58.807 33.333 0.00 0.00 40.78 2.40
1568 3988 8.409371 ACTGTTTTTCTTCTTCTGGAAAAGATC 58.591 33.333 0.00 0.00 40.78 2.75
1577 3997 4.242602 GAAAAGATCCAGGGCGGG 57.757 61.111 0.00 0.00 34.36 6.13
1578 3998 1.453928 GAAAAGATCCAGGGCGGGG 60.454 63.158 0.00 0.00 34.36 5.73
1579 3999 2.211468 GAAAAGATCCAGGGCGGGGT 62.211 60.000 0.00 0.00 34.36 4.95
1580 4000 2.211468 AAAAGATCCAGGGCGGGGTC 62.211 60.000 0.00 0.00 38.41 4.46
1581 4001 3.943137 AAGATCCAGGGCGGGGTCA 62.943 63.158 9.42 0.00 40.73 4.02
1582 4002 3.407967 GATCCAGGGCGGGGTCAA 61.408 66.667 2.51 0.00 38.01 3.18
1583 4003 2.938798 ATCCAGGGCGGGGTCAAA 60.939 61.111 0.00 0.00 34.36 2.69
1584 4004 2.493273 GATCCAGGGCGGGGTCAAAA 62.493 60.000 2.51 0.00 38.01 2.44
1585 4005 2.499303 ATCCAGGGCGGGGTCAAAAG 62.499 60.000 0.00 0.00 34.36 2.27
1586 4006 2.434331 CAGGGCGGGGTCAAAAGA 59.566 61.111 0.00 0.00 0.00 2.52
1587 4007 1.000896 CAGGGCGGGGTCAAAAGAT 60.001 57.895 0.00 0.00 0.00 2.40
1588 4008 0.254747 CAGGGCGGGGTCAAAAGATA 59.745 55.000 0.00 0.00 0.00 1.98
1589 4009 0.255033 AGGGCGGGGTCAAAAGATAC 59.745 55.000 0.00 0.00 0.00 2.24
1590 4010 1.093496 GGGCGGGGTCAAAAGATACG 61.093 60.000 0.00 0.00 0.00 3.06
1591 4011 1.712018 GGCGGGGTCAAAAGATACGC 61.712 60.000 0.00 0.00 44.20 4.42
1592 4012 1.022451 GCGGGGTCAAAAGATACGCA 61.022 55.000 0.00 0.00 44.32 5.24
1593 4013 0.725117 CGGGGTCAAAAGATACGCAC 59.275 55.000 0.00 0.00 0.00 5.34
1594 4014 1.816074 GGGGTCAAAAGATACGCACA 58.184 50.000 0.00 0.00 0.00 4.57
1595 4015 1.737793 GGGGTCAAAAGATACGCACAG 59.262 52.381 0.00 0.00 0.00 3.66
1596 4016 1.737793 GGGTCAAAAGATACGCACAGG 59.262 52.381 0.00 0.00 0.00 4.00
1597 4017 1.130561 GGTCAAAAGATACGCACAGGC 59.869 52.381 0.00 0.00 0.00 4.85
1598 4018 1.804151 GTCAAAAGATACGCACAGGCA 59.196 47.619 0.00 0.00 41.24 4.75
1599 4019 1.804151 TCAAAAGATACGCACAGGCAC 59.196 47.619 0.00 0.00 41.24 5.01
1600 4020 1.535028 CAAAAGATACGCACAGGCACA 59.465 47.619 0.00 0.00 41.24 4.57
1601 4021 1.442769 AAAGATACGCACAGGCACAG 58.557 50.000 0.00 0.00 41.24 3.66
1602 4022 1.021390 AAGATACGCACAGGCACAGC 61.021 55.000 0.00 0.00 41.24 4.40
1603 4023 1.448540 GATACGCACAGGCACAGCT 60.449 57.895 0.00 0.00 41.24 4.24
1604 4024 0.179111 GATACGCACAGGCACAGCTA 60.179 55.000 0.00 0.00 41.24 3.32
1605 4025 0.465705 ATACGCACAGGCACAGCTAT 59.534 50.000 0.00 0.00 41.24 2.97
1606 4026 0.460109 TACGCACAGGCACAGCTATG 60.460 55.000 0.00 0.00 41.24 2.23
1607 4027 1.742880 CGCACAGGCACAGCTATGT 60.743 57.895 0.00 0.00 41.57 2.29
1630 4050 7.265693 GTGTTTGACACTGTTTTTCTTCTTC 57.734 36.000 4.06 0.00 45.27 2.87
1631 4051 7.084486 GTGTTTGACACTGTTTTTCTTCTTCT 58.916 34.615 4.06 0.00 45.27 2.85
1632 4052 7.595130 GTGTTTGACACTGTTTTTCTTCTTCTT 59.405 33.333 4.06 0.00 45.27 2.52
1633 4053 8.141268 TGTTTGACACTGTTTTTCTTCTTCTTT 58.859 29.630 0.00 0.00 0.00 2.52
1634 4054 8.639428 GTTTGACACTGTTTTTCTTCTTCTTTC 58.361 33.333 0.00 0.00 0.00 2.62
1635 4055 6.542852 TGACACTGTTTTTCTTCTTCTTTCG 58.457 36.000 0.00 0.00 0.00 3.46
1636 4056 6.370442 TGACACTGTTTTTCTTCTTCTTTCGA 59.630 34.615 0.00 0.00 0.00 3.71
1682 4102 1.668101 CTCTACTCCACTGGGACGGC 61.668 65.000 0.00 0.00 38.64 5.68
1821 4268 1.272807 ATGCCAAAGCTTGCCTCATT 58.727 45.000 0.00 0.00 40.80 2.57
1890 4339 1.675641 ACCTTGTGCCGGATCAAGC 60.676 57.895 24.21 3.26 39.47 4.01
1893 4342 0.957395 CTTGTGCCGGATCAAGCAGT 60.957 55.000 20.32 0.00 40.28 4.40
1929 4379 1.915614 CTGTGCAGCCGTTCCATGTC 61.916 60.000 0.00 0.00 0.00 3.06
1934 4384 1.733389 GCAGCCGTTCCATGTCAAATG 60.733 52.381 0.00 0.00 0.00 2.32
1935 4385 1.541147 CAGCCGTTCCATGTCAAATGT 59.459 47.619 0.00 0.00 0.00 2.71
1938 4389 2.486203 GCCGTTCCATGTCAAATGTACA 59.514 45.455 0.00 0.00 0.00 2.90
1944 4395 4.077822 TCCATGTCAAATGTACACATGCA 58.922 39.130 14.76 11.31 44.09 3.96
1964 4419 3.699894 CCAGACAGGCCGTGAGCT 61.700 66.667 4.94 0.00 43.05 4.09
1965 4420 2.125753 CAGACAGGCCGTGAGCTC 60.126 66.667 6.82 6.82 43.05 4.09
1966 4421 2.601666 AGACAGGCCGTGAGCTCA 60.602 61.111 13.74 13.74 43.05 4.26
1967 4422 1.986757 AGACAGGCCGTGAGCTCAT 60.987 57.895 21.47 0.62 43.05 2.90
1968 4423 1.812922 GACAGGCCGTGAGCTCATG 60.813 63.158 26.20 26.20 43.05 3.07
1969 4424 2.267006 CAGGCCGTGAGCTCATGT 59.733 61.111 29.44 12.66 43.05 3.21
1970 4425 1.376424 CAGGCCGTGAGCTCATGTT 60.376 57.895 29.44 15.04 43.05 2.71
1971 4426 1.376424 AGGCCGTGAGCTCATGTTG 60.376 57.895 29.44 18.58 43.05 3.33
1972 4427 1.672356 GGCCGTGAGCTCATGTTGT 60.672 57.895 29.44 0.00 43.05 3.32
1973 4428 1.639298 GGCCGTGAGCTCATGTTGTC 61.639 60.000 29.44 16.22 43.05 3.18
1974 4429 0.671781 GCCGTGAGCTCATGTTGTCT 60.672 55.000 29.44 0.00 38.99 3.41
1975 4430 1.800805 CCGTGAGCTCATGTTGTCTT 58.199 50.000 29.44 0.00 0.00 3.01
1976 4431 1.462283 CCGTGAGCTCATGTTGTCTTG 59.538 52.381 29.44 12.32 0.00 3.02
1977 4432 2.138320 CGTGAGCTCATGTTGTCTTGT 58.862 47.619 25.09 0.00 0.00 3.16
1978 4433 2.096565 CGTGAGCTCATGTTGTCTTGTG 60.097 50.000 25.09 0.00 0.00 3.33
1979 4434 2.874701 GTGAGCTCATGTTGTCTTGTGT 59.125 45.455 21.47 0.00 0.00 3.72
1980 4435 3.313526 GTGAGCTCATGTTGTCTTGTGTT 59.686 43.478 21.47 0.00 0.00 3.32
1981 4436 3.313249 TGAGCTCATGTTGTCTTGTGTTG 59.687 43.478 13.74 0.00 0.00 3.33
1982 4437 2.033801 AGCTCATGTTGTCTTGTGTTGC 59.966 45.455 0.00 0.00 0.00 4.17
1983 4438 2.033801 GCTCATGTTGTCTTGTGTTGCT 59.966 45.455 0.00 0.00 0.00 3.91
1984 4439 3.851105 GCTCATGTTGTCTTGTGTTGCTC 60.851 47.826 0.00 0.00 0.00 4.26
1985 4440 3.277715 TCATGTTGTCTTGTGTTGCTCA 58.722 40.909 0.00 0.00 0.00 4.26
1986 4441 3.884693 TCATGTTGTCTTGTGTTGCTCAT 59.115 39.130 0.00 0.00 0.00 2.90
1987 4442 5.062528 TCATGTTGTCTTGTGTTGCTCATA 58.937 37.500 0.00 0.00 0.00 2.15
1988 4443 5.179929 TCATGTTGTCTTGTGTTGCTCATAG 59.820 40.000 0.00 0.00 0.00 2.23
1989 4444 3.814842 TGTTGTCTTGTGTTGCTCATAGG 59.185 43.478 0.00 0.00 0.00 2.57
1990 4445 2.426522 TGTCTTGTGTTGCTCATAGGC 58.573 47.619 0.00 0.00 0.00 3.93
1991 4446 1.740025 GTCTTGTGTTGCTCATAGGCC 59.260 52.381 0.00 0.00 0.00 5.19
1992 4447 1.350684 TCTTGTGTTGCTCATAGGCCA 59.649 47.619 5.01 0.00 0.00 5.36
1993 4448 2.025981 TCTTGTGTTGCTCATAGGCCAT 60.026 45.455 5.01 0.00 0.00 4.40
2017 4475 9.473640 CATAGCAGCCTATATATATTGTGACAG 57.526 37.037 0.00 0.00 33.01 3.51
2023 4481 9.823647 AGCCTATATATATTGTGACAGTAATGC 57.176 33.333 0.00 0.00 0.00 3.56
2037 4495 8.796475 GTGACAGTAATGCCAATATTATCCATT 58.204 33.333 10.41 10.41 0.00 3.16
2038 4496 8.795513 TGACAGTAATGCCAATATTATCCATTG 58.204 33.333 13.44 0.00 33.93 2.82
2040 4498 7.037438 CAGTAATGCCAATATTATCCATTGCC 58.963 38.462 13.44 7.40 33.00 4.52
2046 4504 5.741673 GCCAATATTATCCATTGCCGGTTTT 60.742 40.000 1.90 0.00 33.00 2.43
2047 4505 6.517529 GCCAATATTATCCATTGCCGGTTTTA 60.518 38.462 1.90 0.00 33.00 1.52
2048 4506 6.866248 CCAATATTATCCATTGCCGGTTTTAC 59.134 38.462 1.90 0.00 33.00 2.01
2049 4507 7.429633 CAATATTATCCATTGCCGGTTTTACA 58.570 34.615 1.90 0.00 0.00 2.41
2055 4527 2.642154 TTGCCGGTTTTACAAGGAGA 57.358 45.000 1.90 0.00 0.00 3.71
2109 4584 4.216902 CAGTGAGCACCATCAAATCAAAGA 59.783 41.667 0.00 0.00 0.00 2.52
2110 4585 4.458295 AGTGAGCACCATCAAATCAAAGAG 59.542 41.667 0.00 0.00 0.00 2.85
2122 4599 5.128499 TCAAATCAAAGAGAAAACAGGCCAA 59.872 36.000 5.01 0.00 0.00 4.52
2132 4609 2.603075 AACAGGCCAACCATGTATGT 57.397 45.000 5.01 0.00 39.06 2.29
2139 4616 1.817941 AACCATGTATGTCGGCGCC 60.818 57.895 19.07 19.07 0.00 6.53
2140 4617 2.203001 CCATGTATGTCGGCGCCA 60.203 61.111 28.98 11.20 0.00 5.69
2148 4625 4.891727 GTCGGCGCCACCATCGAT 62.892 66.667 28.98 0.00 39.03 3.59
2155 4632 0.096976 CGCCACCATCGATGAAACAC 59.903 55.000 26.86 10.57 0.00 3.32
2166 4643 7.148474 ACCATCGATGAAACACACATAAACTAC 60.148 37.037 26.86 0.00 0.00 2.73
2168 4645 7.112528 TCGATGAAACACACATAAACTACAC 57.887 36.000 0.00 0.00 0.00 2.90
2174 4651 7.497579 TGAAACACACATAAACTACACTGTGAT 59.502 33.333 15.86 1.48 41.11 3.06
2185 4662 8.677148 AAACTACACTGTGATCATAGTTTTGT 57.323 30.769 21.22 18.31 41.16 2.83
2205 4682 9.285770 GTTTTGTTATGAAGAAAGAAACGTTCT 57.714 29.630 0.00 0.00 43.15 3.01
2330 4807 4.219725 ACTTTCTGAGCTACTCTTGTCTCC 59.780 45.833 0.00 0.00 0.00 3.71
2331 4808 2.360844 TCTGAGCTACTCTTGTCTCCG 58.639 52.381 0.00 0.00 0.00 4.63
2332 4809 1.403679 CTGAGCTACTCTTGTCTCCGG 59.596 57.143 0.00 0.00 0.00 5.14
2361 4838 2.887152 AGCTCCTTTTGTTTGCGATTCT 59.113 40.909 0.00 0.00 0.00 2.40
2391 4871 4.326826 TGATCTGCGTTCATTCCTTTTCT 58.673 39.130 0.00 0.00 0.00 2.52
2401 4881 2.514458 TTCCTTTTCTGGATGGCTCC 57.486 50.000 0.00 0.00 42.45 4.70
2635 5121 9.886132 GAGAACCCAAGTTACTAAAATAGATGA 57.114 33.333 0.00 0.00 35.94 2.92
2651 5138 1.129437 GATGAAAGTCTGCACGCCTTC 59.871 52.381 0.00 0.00 0.00 3.46
2808 5299 1.348250 CTCGCACACACACACACAC 59.652 57.895 0.00 0.00 0.00 3.82
2810 5301 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2812 5303 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
2814 5305 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2816 5307 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2818 5309 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2820 5311 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2821 5312 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2822 5313 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2823 5314 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2824 5315 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2825 5316 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2826 5317 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2827 5318 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2828 5319 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2829 5320 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2830 5321 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2831 5322 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2832 5323 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2833 5324 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2834 5325 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2835 5326 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2836 5327 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2837 5328 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2838 5329 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2843 5334 1.804151 ACACACACACACACACACTTC 59.196 47.619 0.00 0.00 0.00 3.01
2853 5344 1.277842 ACACACACTTCACTGTGGACA 59.722 47.619 8.11 0.00 45.08 4.02
2863 5354 2.672651 TGTGGACAGGGCATTGCG 60.673 61.111 1.91 0.00 0.00 4.85
2898 5395 5.689383 TGGAGTACATCTGAAGCAAAAAC 57.311 39.130 0.00 0.00 0.00 2.43
2932 5430 4.074970 GCATACATATCTTCCAGGTTGGG 58.925 47.826 0.00 0.00 38.32 4.12
2941 5439 2.534396 CCAGGTTGGGGCACAGGTA 61.534 63.158 0.00 0.00 32.67 3.08
2954 5452 5.956563 GGGGCACAGGTAGTACATATATACT 59.043 44.000 2.06 0.00 38.89 2.12
2955 5453 6.096564 GGGGCACAGGTAGTACATATATACTC 59.903 46.154 0.00 0.00 36.74 2.59
2956 5454 6.096564 GGGCACAGGTAGTACATATATACTCC 59.903 46.154 0.00 0.00 36.74 3.85
2957 5455 6.096564 GGCACAGGTAGTACATATATACTCCC 59.903 46.154 0.00 0.00 36.74 4.30
2958 5456 6.890814 GCACAGGTAGTACATATATACTCCCT 59.109 42.308 0.00 0.00 41.02 4.20
2959 5457 7.067251 GCACAGGTAGTACATATATACTCCCTC 59.933 44.444 2.42 0.00 38.97 4.30
2960 5458 8.330247 CACAGGTAGTACATATATACTCCCTCT 58.670 40.741 2.42 0.00 38.97 3.69
2961 5459 8.330247 ACAGGTAGTACATATATACTCCCTCTG 58.670 40.741 2.42 6.81 38.97 3.35
2962 5460 8.330247 CAGGTAGTACATATATACTCCCTCTGT 58.670 40.741 2.42 0.00 38.97 3.41
2963 5461 9.571823 AGGTAGTACATATATACTCCCTCTGTA 57.428 37.037 0.00 0.00 36.98 2.74
2978 5476 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2979 5477 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2980 5478 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2981 5479 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2982 5480 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2997 5495 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2998 5496 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2999 5497 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
3000 5498 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
3001 5499 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
3002 5500 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
3003 5501 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
3009 5507 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
3010 5508 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
3011 5509 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
3012 5510 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
3013 5511 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.635443 CCAACACGGTTGATGGGGC 61.635 63.158 15.59 0.00 41.09 5.80
79 80 1.162800 GCCTAGCCGGAGAGCAAATG 61.163 60.000 5.05 0.00 34.23 2.32
80 81 1.147153 GCCTAGCCGGAGAGCAAAT 59.853 57.895 5.05 0.00 34.23 2.32
81 82 2.584608 GCCTAGCCGGAGAGCAAA 59.415 61.111 5.05 0.00 34.23 3.68
82 83 3.470888 GGCCTAGCCGGAGAGCAA 61.471 66.667 5.05 0.00 39.62 3.91
92 93 4.182433 GGGGAGCACAGGCCTAGC 62.182 72.222 19.02 19.02 42.56 3.42
99 100 1.142748 GACGATGAGGGGAGCACAG 59.857 63.158 0.00 0.00 0.00 3.66
113 114 0.173255 TGCGATGCAGATGAAGACGA 59.827 50.000 0.00 0.00 33.32 4.20
125 126 0.179062 AATCCTGGAGAGTGCGATGC 60.179 55.000 1.52 0.00 0.00 3.91
130 131 2.016096 GCCTCAAATCCTGGAGAGTGC 61.016 57.143 1.52 5.97 32.87 4.40
132 133 0.915364 GGCCTCAAATCCTGGAGAGT 59.085 55.000 1.52 0.00 32.87 3.24
134 135 1.207791 GAGGCCTCAAATCCTGGAGA 58.792 55.000 28.43 0.00 32.87 3.71
137 138 0.182299 GGAGAGGCCTCAAATCCTGG 59.818 60.000 33.90 0.00 41.20 4.45
138 139 0.182299 GGGAGAGGCCTCAAATCCTG 59.818 60.000 33.90 0.00 41.20 3.86
219 220 3.043999 GCAGGGCAATAGTCCGGGT 62.044 63.158 0.00 0.00 46.92 5.28
221 222 2.203209 GGCAGGGCAATAGTCCGG 60.203 66.667 0.00 0.00 46.92 5.14
223 224 2.902343 GCGGCAGGGCAATAGTCC 60.902 66.667 0.00 0.00 40.92 3.85
224 225 2.182842 CAGCGGCAGGGCAATAGTC 61.183 63.158 1.45 0.00 34.64 2.59
299 300 0.605319 ATCGGCAACAACACGTCCAT 60.605 50.000 0.00 0.00 0.00 3.41
308 309 1.555075 AGGCTCTAGAATCGGCAACAA 59.445 47.619 6.77 0.00 0.00 2.83
311 312 1.485124 TGAGGCTCTAGAATCGGCAA 58.515 50.000 16.72 0.00 0.00 4.52
330 331 0.251474 TGCTTGCTGCCTCTGGAATT 60.251 50.000 0.00 0.00 42.00 2.17
346 347 2.684881 CCGAAAAAGGCATAGATGTGCT 59.315 45.455 1.52 0.00 44.45 4.40
348 349 3.313526 CCTCCGAAAAAGGCATAGATGTG 59.686 47.826 0.00 0.00 0.00 3.21
350 351 3.808728 TCCTCCGAAAAAGGCATAGATG 58.191 45.455 0.00 0.00 33.65 2.90
351 352 3.181450 CCTCCTCCGAAAAAGGCATAGAT 60.181 47.826 0.00 0.00 33.65 1.98
366 368 0.955919 CTTTCACAACCGCCTCCTCC 60.956 60.000 0.00 0.00 0.00 4.30
367 369 1.578206 GCTTTCACAACCGCCTCCTC 61.578 60.000 0.00 0.00 0.00 3.71
377 379 6.042638 AGAATACTCTAGCAGCTTTCACAA 57.957 37.500 0.00 0.00 0.00 3.33
465 497 1.081774 GATCTCAGATCGACGGCCG 60.082 63.158 26.86 26.86 40.25 6.13
476 508 2.591571 TGCTGTCCATTCGATCTCAG 57.408 50.000 0.00 0.00 0.00 3.35
499 531 3.526534 TGACACTTTCGTTCACATCACA 58.473 40.909 0.00 0.00 0.00 3.58
511 543 4.766404 ACATTCCCGAAATGACACTTTC 57.234 40.909 14.85 0.00 46.54 2.62
520 552 2.225267 ACCCTCCAAACATTCCCGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
521 553 1.146152 ACCCTCCAAACATTCCCGAAA 59.854 47.619 0.00 0.00 0.00 3.46
522 554 0.774908 ACCCTCCAAACATTCCCGAA 59.225 50.000 0.00 0.00 0.00 4.30
523 555 0.774908 AACCCTCCAAACATTCCCGA 59.225 50.000 0.00 0.00 0.00 5.14
524 556 1.627864 AAACCCTCCAAACATTCCCG 58.372 50.000 0.00 0.00 0.00 5.14
525 557 2.301870 GGAAAACCCTCCAAACATTCCC 59.698 50.000 0.00 0.00 35.36 3.97
526 558 2.969262 TGGAAAACCCTCCAAACATTCC 59.031 45.455 0.00 0.00 42.69 3.01
544 576 9.295825 ACAAGTCTTGTATGAATGTTTTATGGA 57.704 29.630 16.74 0.00 43.27 3.41
545 577 9.559958 GACAAGTCTTGTATGAATGTTTTATGG 57.440 33.333 18.17 0.00 45.52 2.74
573 605 8.412608 TCAAAATACGCATTGAGAAACAAAAA 57.587 26.923 0.00 0.00 42.03 1.94
574 606 7.993821 TCAAAATACGCATTGAGAAACAAAA 57.006 28.000 0.00 0.00 42.03 2.44
575 607 7.993821 TTCAAAATACGCATTGAGAAACAAA 57.006 28.000 0.00 0.00 42.03 2.83
576 608 8.586570 AATTCAAAATACGCATTGAGAAACAA 57.413 26.923 0.00 0.00 42.95 2.83
577 609 8.586570 AAATTCAAAATACGCATTGAGAAACA 57.413 26.923 0.00 0.00 36.93 2.83
578 610 9.305110 CAAAATTCAAAATACGCATTGAGAAAC 57.695 29.630 0.00 0.00 36.93 2.78
579 611 9.254133 TCAAAATTCAAAATACGCATTGAGAAA 57.746 25.926 0.00 0.00 36.93 2.52
580 612 8.809159 TCAAAATTCAAAATACGCATTGAGAA 57.191 26.923 0.00 0.02 36.93 2.87
581 613 8.984891 ATCAAAATTCAAAATACGCATTGAGA 57.015 26.923 0.00 0.00 36.93 3.27
583 615 9.808808 CAAATCAAAATTCAAAATACGCATTGA 57.191 25.926 0.00 0.00 33.93 2.57
584 616 9.808808 TCAAATCAAAATTCAAAATACGCATTG 57.191 25.926 0.00 0.00 0.00 2.82
613 645 8.821686 TCACATGAATGTACAATCCCTAAAAT 57.178 30.769 8.44 0.00 39.39 1.82
621 653 6.635641 GCATCACATCACATGAATGTACAATC 59.364 38.462 14.99 0.73 39.39 2.67
633 665 2.477825 GACGCTAGCATCACATCACAT 58.522 47.619 16.45 0.00 0.00 3.21
634 666 1.471501 GGACGCTAGCATCACATCACA 60.472 52.381 13.52 0.00 0.00 3.58
635 667 1.212616 GGACGCTAGCATCACATCAC 58.787 55.000 13.52 0.00 0.00 3.06
636 668 0.823460 TGGACGCTAGCATCACATCA 59.177 50.000 13.52 0.00 0.00 3.07
637 669 1.212616 GTGGACGCTAGCATCACATC 58.787 55.000 13.52 0.00 0.00 3.06
730 762 2.224548 GGGGTGAATATCTGGTGCTACC 60.225 54.545 0.00 0.00 39.22 3.18
735 767 0.108585 CCGGGGGTGAATATCTGGTG 59.891 60.000 0.00 0.00 0.00 4.17
736 768 1.705997 GCCGGGGGTGAATATCTGGT 61.706 60.000 2.18 0.00 0.00 4.00
737 769 1.073199 GCCGGGGGTGAATATCTGG 59.927 63.158 2.18 0.00 0.00 3.86
738 770 1.073199 GGCCGGGGGTGAATATCTG 59.927 63.158 2.18 0.00 0.00 2.90
739 771 0.192566 TAGGCCGGGGGTGAATATCT 59.807 55.000 2.18 0.00 0.00 1.98
740 772 1.065418 CATAGGCCGGGGGTGAATATC 60.065 57.143 2.18 0.00 0.00 1.63
741 773 0.991920 CATAGGCCGGGGGTGAATAT 59.008 55.000 2.18 0.00 0.00 1.28
742 774 1.131303 CCATAGGCCGGGGGTGAATA 61.131 60.000 2.18 0.00 0.00 1.75
743 775 2.460853 CCATAGGCCGGGGGTGAAT 61.461 63.158 2.18 0.00 0.00 2.57
744 776 3.093835 CCATAGGCCGGGGGTGAA 61.094 66.667 2.18 0.00 0.00 3.18
755 787 4.024048 GTCATTGATTTACACGCCCATAGG 60.024 45.833 0.00 0.00 0.00 2.57
756 788 4.318760 CGTCATTGATTTACACGCCCATAG 60.319 45.833 0.00 0.00 0.00 2.23
757 789 3.558006 CGTCATTGATTTACACGCCCATA 59.442 43.478 0.00 0.00 0.00 2.74
758 790 2.354510 CGTCATTGATTTACACGCCCAT 59.645 45.455 0.00 0.00 0.00 4.00
759 791 1.735018 CGTCATTGATTTACACGCCCA 59.265 47.619 0.00 0.00 0.00 5.36
760 792 2.004017 TCGTCATTGATTTACACGCCC 58.996 47.619 0.00 0.00 0.00 6.13
761 793 2.534150 CGTCGTCATTGATTTACACGCC 60.534 50.000 0.00 0.00 0.00 5.68
762 794 2.534150 CCGTCGTCATTGATTTACACGC 60.534 50.000 0.00 0.00 0.00 5.34
780 1030 1.808343 GGTGGAAGAAATTAACGCCGT 59.192 47.619 0.00 0.00 0.00 5.68
782 1032 3.926821 TTGGTGGAAGAAATTAACGCC 57.073 42.857 0.00 0.00 0.00 5.68
818 1082 1.903404 CTCTTGGCAAGGCGGGTTT 60.903 57.895 25.92 0.00 0.00 3.27
830 3215 1.377333 GAGCCCGTTTCCCTCTTGG 60.377 63.158 0.00 0.00 0.00 3.61
857 3242 0.540597 AAGAAGGTGCCTTTCTGCCC 60.541 55.000 4.83 0.00 36.26 5.36
869 3254 1.490490 TGGAAGCACACTGAAGAAGGT 59.510 47.619 0.00 0.00 0.00 3.50
870 3255 1.876156 GTGGAAGCACACTGAAGAAGG 59.124 52.381 0.00 0.00 38.32 3.46
938 3323 3.236003 GAGTGGGTCGTGGGTCACC 62.236 68.421 0.00 0.00 37.24 4.02
939 3324 2.342648 GAGTGGGTCGTGGGTCAC 59.657 66.667 0.00 0.00 0.00 3.67
940 3325 2.123208 TGAGTGGGTCGTGGGTCA 60.123 61.111 0.00 0.00 0.00 4.02
941 3326 2.342648 GTGAGTGGGTCGTGGGTC 59.657 66.667 0.00 0.00 0.00 4.46
942 3327 3.239253 GGTGAGTGGGTCGTGGGT 61.239 66.667 0.00 0.00 0.00 4.51
1011 3406 2.569853 TGGTTCGAGGTGGATATGTGTT 59.430 45.455 0.00 0.00 0.00 3.32
1072 3472 2.350772 GCCATTGGAACGTTCACTTGAG 60.351 50.000 28.24 13.51 0.00 3.02
1076 3476 1.234615 CCGCCATTGGAACGTTCACT 61.235 55.000 28.24 10.30 0.00 3.41
1165 3565 0.601311 AGAGTTGAGTGAGCGTTGGC 60.601 55.000 0.00 0.00 40.37 4.52
1178 3578 5.406649 ACGAGATGCTTAGAAGAAGAGTTG 58.593 41.667 0.00 0.00 0.00 3.16
1191 3591 1.568504 TCAACCCCTACGAGATGCTT 58.431 50.000 0.00 0.00 0.00 3.91
1193 3593 1.541233 CCATCAACCCCTACGAGATGC 60.541 57.143 0.00 0.00 35.84 3.91
1202 3602 1.077265 CCAGCAACCATCAACCCCT 59.923 57.895 0.00 0.00 0.00 4.79
1403 3805 4.867599 GTCGGCGTCATCCCCGTC 62.868 72.222 6.85 0.00 44.63 4.79
1407 3809 4.530857 CTGGGTCGGCGTCATCCC 62.531 72.222 18.93 18.93 40.26 3.85
1408 3810 2.420568 TACTGGGTCGGCGTCATCC 61.421 63.158 6.85 0.00 0.00 3.51
1411 3813 2.598099 TGTACTGGGTCGGCGTCA 60.598 61.111 6.85 3.46 0.00 4.35
1416 3818 4.789075 CGGCGTGTACTGGGTCGG 62.789 72.222 0.00 0.00 0.00 4.79
1421 3823 3.352338 GAGGTCCGGCGTGTACTGG 62.352 68.421 6.01 0.00 37.44 4.00
1423 3825 3.437795 CGAGGTCCGGCGTGTACT 61.438 66.667 6.01 0.00 33.91 2.73
1464 3884 7.329471 GCATCATCATGTACGTATGTATCTTGT 59.671 37.037 0.00 0.00 32.11 3.16
1468 3888 6.586082 TGTGCATCATCATGTACGTATGTATC 59.414 38.462 0.00 0.00 45.91 2.24
1471 3891 4.507756 GTGTGCATCATCATGTACGTATGT 59.492 41.667 0.00 0.00 45.91 2.29
1472 3892 4.507388 TGTGTGCATCATCATGTACGTATG 59.493 41.667 0.00 0.00 45.91 2.39
1473 3893 4.692228 TGTGTGCATCATCATGTACGTAT 58.308 39.130 0.00 0.00 45.91 3.06
1474 3894 4.111916 CTGTGTGCATCATCATGTACGTA 58.888 43.478 0.00 0.00 45.91 3.57
1475 3895 2.931969 CTGTGTGCATCATCATGTACGT 59.068 45.455 0.00 0.00 45.91 3.57
1476 3896 2.286008 GCTGTGTGCATCATCATGTACG 60.286 50.000 0.00 0.00 45.91 3.67
1478 3898 3.271055 AGCTGTGTGCATCATCATGTA 57.729 42.857 0.00 0.00 45.94 2.29
1479 3899 2.124277 AGCTGTGTGCATCATCATGT 57.876 45.000 0.00 0.00 45.94 3.21
1480 3900 3.203716 ACTAGCTGTGTGCATCATCATG 58.796 45.455 0.00 0.00 45.94 3.07
1481 3901 3.555527 ACTAGCTGTGTGCATCATCAT 57.444 42.857 0.00 0.00 45.94 2.45
1486 3906 1.656095 GACGAACTAGCTGTGTGCATC 59.344 52.381 0.00 0.00 45.94 3.91
1487 3907 1.000843 TGACGAACTAGCTGTGTGCAT 59.999 47.619 0.00 0.00 45.94 3.96
1488 3908 0.387565 TGACGAACTAGCTGTGTGCA 59.612 50.000 0.00 0.00 45.94 4.57
1489 3909 1.497991 TTGACGAACTAGCTGTGTGC 58.502 50.000 0.00 0.00 43.29 4.57
1492 3912 5.633601 TGTATCTTTTGACGAACTAGCTGTG 59.366 40.000 0.00 0.00 0.00 3.66
1493 3913 5.634020 GTGTATCTTTTGACGAACTAGCTGT 59.366 40.000 0.00 0.00 0.00 4.40
1495 3915 5.634020 GTGTGTATCTTTTGACGAACTAGCT 59.366 40.000 0.00 0.00 0.00 3.32
1498 3918 5.924254 CCTGTGTGTATCTTTTGACGAACTA 59.076 40.000 0.00 0.00 0.00 2.24
1500 3920 4.748102 TCCTGTGTGTATCTTTTGACGAAC 59.252 41.667 0.00 0.00 0.00 3.95
1504 3924 4.814234 TGTGTCCTGTGTGTATCTTTTGAC 59.186 41.667 0.00 0.00 0.00 3.18
1505 3925 5.029807 TGTGTCCTGTGTGTATCTTTTGA 57.970 39.130 0.00 0.00 0.00 2.69
1506 3926 4.319766 GCTGTGTCCTGTGTGTATCTTTTG 60.320 45.833 0.00 0.00 0.00 2.44
1507 3927 3.815401 GCTGTGTCCTGTGTGTATCTTTT 59.185 43.478 0.00 0.00 0.00 2.27
1510 3930 2.251818 AGCTGTGTCCTGTGTGTATCT 58.748 47.619 0.00 0.00 0.00 1.98
1513 3933 2.897326 ACATAGCTGTGTCCTGTGTGTA 59.103 45.455 10.73 0.00 34.07 2.90
1514 3934 1.694150 ACATAGCTGTGTCCTGTGTGT 59.306 47.619 10.73 0.00 34.07 3.72
1515 3935 2.071540 CACATAGCTGTGTCCTGTGTG 58.928 52.381 13.83 0.00 46.33 3.82
1539 3959 6.436843 TTCCAGAAGAAGAAAAACAGTGTC 57.563 37.500 0.00 0.00 0.00 3.67
1559 3979 1.453928 CCCGCCCTGGATCTTTTCC 60.454 63.158 0.00 0.00 45.69 3.13
1563 3983 3.090532 GACCCCGCCCTGGATCTT 61.091 66.667 0.00 0.00 42.00 2.40
1564 3984 3.943137 TTGACCCCGCCCTGGATCT 62.943 63.158 0.00 0.00 42.00 2.75
1565 3985 2.493273 TTTTGACCCCGCCCTGGATC 62.493 60.000 0.00 0.00 42.00 3.36
1566 3986 2.499303 CTTTTGACCCCGCCCTGGAT 62.499 60.000 0.00 0.00 42.00 3.41
1567 3987 3.179339 TTTTGACCCCGCCCTGGA 61.179 61.111 0.00 0.00 42.00 3.86
1568 3988 2.499303 ATCTTTTGACCCCGCCCTGG 62.499 60.000 0.00 0.00 37.55 4.45
1569 3989 0.254747 TATCTTTTGACCCCGCCCTG 59.745 55.000 0.00 0.00 0.00 4.45
1570 3990 0.255033 GTATCTTTTGACCCCGCCCT 59.745 55.000 0.00 0.00 0.00 5.19
1571 3991 1.093496 CGTATCTTTTGACCCCGCCC 61.093 60.000 0.00 0.00 0.00 6.13
1572 3992 1.712018 GCGTATCTTTTGACCCCGCC 61.712 60.000 0.00 0.00 36.67 6.13
1573 3993 1.022451 TGCGTATCTTTTGACCCCGC 61.022 55.000 0.00 0.00 40.32 6.13
1574 3994 0.725117 GTGCGTATCTTTTGACCCCG 59.275 55.000 0.00 0.00 0.00 5.73
1575 3995 1.737793 CTGTGCGTATCTTTTGACCCC 59.262 52.381 0.00 0.00 0.00 4.95
1576 3996 1.737793 CCTGTGCGTATCTTTTGACCC 59.262 52.381 0.00 0.00 0.00 4.46
1577 3997 1.130561 GCCTGTGCGTATCTTTTGACC 59.869 52.381 0.00 0.00 0.00 4.02
1578 3998 1.804151 TGCCTGTGCGTATCTTTTGAC 59.196 47.619 0.00 0.00 41.78 3.18
1579 3999 1.804151 GTGCCTGTGCGTATCTTTTGA 59.196 47.619 0.00 0.00 41.78 2.69
1580 4000 1.535028 TGTGCCTGTGCGTATCTTTTG 59.465 47.619 0.00 0.00 41.78 2.44
1581 4001 1.806542 CTGTGCCTGTGCGTATCTTTT 59.193 47.619 0.00 0.00 41.78 2.27
1582 4002 1.442769 CTGTGCCTGTGCGTATCTTT 58.557 50.000 0.00 0.00 41.78 2.52
1583 4003 1.021390 GCTGTGCCTGTGCGTATCTT 61.021 55.000 0.00 0.00 41.78 2.40
1584 4004 1.448540 GCTGTGCCTGTGCGTATCT 60.449 57.895 0.00 0.00 41.78 1.98
1585 4005 0.179111 TAGCTGTGCCTGTGCGTATC 60.179 55.000 0.00 0.00 41.78 2.24
1586 4006 0.465705 ATAGCTGTGCCTGTGCGTAT 59.534 50.000 0.00 0.00 41.78 3.06
1587 4007 0.460109 CATAGCTGTGCCTGTGCGTA 60.460 55.000 0.00 0.00 41.78 4.42
1588 4008 1.742880 CATAGCTGTGCCTGTGCGT 60.743 57.895 0.00 0.00 41.78 5.24
1589 4009 1.742880 ACATAGCTGTGCCTGTGCG 60.743 57.895 10.79 0.00 41.78 5.34
1590 4010 1.798735 CACATAGCTGTGCCTGTGC 59.201 57.895 10.79 0.00 45.79 4.57
1607 4027 7.214467 AGAAGAAGAAAAACAGTGTCAAACA 57.786 32.000 0.00 0.00 0.00 2.83
1608 4028 8.520835 AAAGAAGAAGAAAAACAGTGTCAAAC 57.479 30.769 0.00 0.00 0.00 2.93
1609 4029 7.537306 CGAAAGAAGAAGAAAAACAGTGTCAAA 59.463 33.333 0.00 0.00 0.00 2.69
1610 4030 7.021196 CGAAAGAAGAAGAAAAACAGTGTCAA 58.979 34.615 0.00 0.00 0.00 3.18
1611 4031 6.370442 TCGAAAGAAGAAGAAAAACAGTGTCA 59.630 34.615 0.00 0.00 37.03 3.58
1612 4032 6.772078 TCGAAAGAAGAAGAAAAACAGTGTC 58.228 36.000 0.00 0.00 37.03 3.67
1613 4033 6.737254 TCGAAAGAAGAAGAAAAACAGTGT 57.263 33.333 0.00 0.00 37.03 3.55
1628 4048 4.627565 CCGCCCTGGATCTTCGAAAGAA 62.628 54.545 0.00 0.00 44.94 2.52
1629 4049 0.175760 CGCCCTGGATCTTCGAAAGA 59.824 55.000 0.00 0.00 42.69 2.52
1630 4050 0.811616 CCGCCCTGGATCTTCGAAAG 60.812 60.000 0.00 0.00 42.00 2.62
1631 4051 1.220749 CCGCCCTGGATCTTCGAAA 59.779 57.895 0.00 0.00 42.00 3.46
1632 4052 2.731571 CCCGCCCTGGATCTTCGAA 61.732 63.158 0.00 0.00 42.00 3.71
1633 4053 3.154473 CCCGCCCTGGATCTTCGA 61.154 66.667 0.00 0.00 42.00 3.71
1634 4054 4.918201 GCCCGCCCTGGATCTTCG 62.918 72.222 0.00 0.00 42.00 3.79
1635 4055 3.483869 AGCCCGCCCTGGATCTTC 61.484 66.667 0.00 0.00 42.00 2.87
1636 4056 3.801997 CAGCCCGCCCTGGATCTT 61.802 66.667 0.00 0.00 42.00 2.40
1807 4254 2.560105 GGACAGAAATGAGGCAAGCTTT 59.440 45.455 0.00 0.00 0.00 3.51
1821 4268 5.745312 ACAGACATACATCTTGGACAGAA 57.255 39.130 0.00 0.00 34.16 3.02
1881 4330 6.138761 GCTTTATTTGATACTGCTTGATCCG 58.861 40.000 0.00 0.00 0.00 4.18
1890 4339 6.779117 CACAGGAGTGCTTTATTTGATACTG 58.221 40.000 0.00 0.00 39.21 2.74
1929 4379 5.097529 GTCTGGAATGCATGTGTACATTTG 58.902 41.667 0.00 0.97 36.65 2.32
1934 4384 2.679837 CCTGTCTGGAATGCATGTGTAC 59.320 50.000 0.00 0.00 38.35 2.90
1935 4385 2.940971 GCCTGTCTGGAATGCATGTGTA 60.941 50.000 0.00 0.00 38.35 2.90
1938 4389 0.682209 GGCCTGTCTGGAATGCATGT 60.682 55.000 0.00 0.00 38.35 3.21
1944 4395 1.599047 CTCACGGCCTGTCTGGAAT 59.401 57.895 0.00 0.00 38.35 3.01
1964 4419 3.277715 TGAGCAACACAAGACAACATGA 58.722 40.909 0.00 0.00 0.00 3.07
1965 4420 3.696281 TGAGCAACACAAGACAACATG 57.304 42.857 0.00 0.00 0.00 3.21
1966 4421 4.456911 CCTATGAGCAACACAAGACAACAT 59.543 41.667 0.00 0.00 0.00 2.71
1967 4422 3.814842 CCTATGAGCAACACAAGACAACA 59.185 43.478 0.00 0.00 0.00 3.33
1968 4423 3.365364 GCCTATGAGCAACACAAGACAAC 60.365 47.826 0.00 0.00 0.00 3.32
1969 4424 2.813754 GCCTATGAGCAACACAAGACAA 59.186 45.455 0.00 0.00 0.00 3.18
1970 4425 2.426522 GCCTATGAGCAACACAAGACA 58.573 47.619 0.00 0.00 0.00 3.41
1971 4426 1.740025 GGCCTATGAGCAACACAAGAC 59.260 52.381 0.00 0.00 0.00 3.01
1972 4427 1.350684 TGGCCTATGAGCAACACAAGA 59.649 47.619 3.32 0.00 0.00 3.02
1973 4428 1.825090 TGGCCTATGAGCAACACAAG 58.175 50.000 3.32 0.00 0.00 3.16
1974 4429 2.512692 ATGGCCTATGAGCAACACAA 57.487 45.000 3.32 0.00 0.00 3.33
1975 4430 2.746142 GCTATGGCCTATGAGCAACACA 60.746 50.000 3.32 0.00 34.96 3.72
1976 4431 1.876156 GCTATGGCCTATGAGCAACAC 59.124 52.381 3.32 0.00 34.96 3.32
1977 4432 1.490069 TGCTATGGCCTATGAGCAACA 59.510 47.619 15.92 0.00 41.78 3.33
1978 4433 2.149578 CTGCTATGGCCTATGAGCAAC 58.850 52.381 17.94 0.00 43.94 4.17
1979 4434 1.544093 GCTGCTATGGCCTATGAGCAA 60.544 52.381 17.94 6.74 43.94 3.91
1980 4435 0.035881 GCTGCTATGGCCTATGAGCA 59.964 55.000 16.87 16.87 42.47 4.26
1981 4436 0.676151 GGCTGCTATGGCCTATGAGC 60.676 60.000 3.32 8.06 45.57 4.26
1982 4437 3.547567 GGCTGCTATGGCCTATGAG 57.452 57.895 3.32 0.00 45.57 2.90
1989 4444 7.386299 GTCACAATATATATAGGCTGCTATGGC 59.614 40.741 0.00 0.00 39.26 4.40
1990 4445 8.424133 TGTCACAATATATATAGGCTGCTATGG 58.576 37.037 0.00 0.00 0.00 2.74
1991 4446 9.473640 CTGTCACAATATATATAGGCTGCTATG 57.526 37.037 0.00 0.00 0.00 2.23
1992 4447 9.206690 ACTGTCACAATATATATAGGCTGCTAT 57.793 33.333 0.00 0.00 0.00 2.97
1993 4448 8.595362 ACTGTCACAATATATATAGGCTGCTA 57.405 34.615 0.00 0.00 0.00 3.49
2008 4463 8.796475 GGATAATATTGGCATTACTGTCACAAT 58.204 33.333 0.00 0.00 36.53 2.71
2009 4464 7.777440 TGGATAATATTGGCATTACTGTCACAA 59.223 33.333 0.00 0.00 36.53 3.33
2023 4481 5.467035 AAACCGGCAATGGATAATATTGG 57.533 39.130 0.00 0.00 36.33 3.16
2030 4488 3.697045 CCTTGTAAAACCGGCAATGGATA 59.303 43.478 0.00 0.00 0.00 2.59
2037 4495 2.432444 CATCTCCTTGTAAAACCGGCA 58.568 47.619 0.00 0.00 0.00 5.69
2038 4496 1.132453 GCATCTCCTTGTAAAACCGGC 59.868 52.381 0.00 0.00 0.00 6.13
2040 4498 3.334691 TCTGCATCTCCTTGTAAAACCG 58.665 45.455 0.00 0.00 0.00 4.44
2046 4504 3.107402 ACCTCTCTGCATCTCCTTGTA 57.893 47.619 0.00 0.00 0.00 2.41
2047 4505 1.949799 ACCTCTCTGCATCTCCTTGT 58.050 50.000 0.00 0.00 0.00 3.16
2048 4506 4.478206 TTTACCTCTCTGCATCTCCTTG 57.522 45.455 0.00 0.00 0.00 3.61
2049 4507 5.663106 TGTATTTACCTCTCTGCATCTCCTT 59.337 40.000 0.00 0.00 0.00 3.36
2055 4527 4.884164 GGCTTTGTATTTACCTCTCTGCAT 59.116 41.667 0.00 0.00 0.00 3.96
2109 4584 2.086610 ACATGGTTGGCCTGTTTTCT 57.913 45.000 3.32 0.00 35.27 2.52
2110 4585 3.258123 ACATACATGGTTGGCCTGTTTTC 59.742 43.478 3.32 0.00 35.27 2.29
2122 4599 2.203015 GGCGCCGACATACATGGT 60.203 61.111 12.58 0.00 0.00 3.55
2132 4609 4.889856 CATCGATGGTGGCGCCGA 62.890 66.667 23.90 14.57 41.21 5.54
2139 4616 5.544136 TTATGTGTGTTTCATCGATGGTG 57.456 39.130 24.61 1.35 0.00 4.17
2140 4617 5.705441 AGTTTATGTGTGTTTCATCGATGGT 59.295 36.000 24.61 3.65 0.00 3.55
2148 4625 6.819146 TCACAGTGTAGTTTATGTGTGTTTCA 59.181 34.615 0.00 0.00 42.80 2.69
2155 4632 8.932945 ACTATGATCACAGTGTAGTTTATGTG 57.067 34.615 5.68 0.00 43.44 3.21
2166 4643 9.764870 CTTCATAACAAAACTATGATCACAGTG 57.235 33.333 7.56 0.00 36.05 3.66
2183 4660 6.427150 GCAGAACGTTTCTTTCTTCATAACA 58.573 36.000 0.46 0.00 38.11 2.41
2185 4662 5.675970 CGCAGAACGTTTCTTTCTTCATAA 58.324 37.500 0.46 0.00 38.11 1.90
2205 4682 5.218885 CACAGATTTTTGATTTGGTACGCA 58.781 37.500 0.00 0.00 0.00 5.24
2210 4687 6.403866 TGCTACACAGATTTTTGATTTGGT 57.596 33.333 0.00 0.00 0.00 3.67
2330 4807 3.600388 ACAAAAGGAGCTGATTAGACCG 58.400 45.455 0.00 0.00 0.00 4.79
2331 4808 5.703876 CAAACAAAAGGAGCTGATTAGACC 58.296 41.667 0.00 0.00 0.00 3.85
2332 4809 5.157067 GCAAACAAAAGGAGCTGATTAGAC 58.843 41.667 0.00 0.00 0.00 2.59
2606 5092 9.939802 TCTATTTTAGTAACTTGGGTTCTCTTC 57.060 33.333 0.00 0.00 36.92 2.87
2640 5127 2.684843 GGCAAGAGAAGGCGTGCAG 61.685 63.158 0.00 0.00 43.59 4.41
2641 5128 2.669569 GGCAAGAGAAGGCGTGCA 60.670 61.111 0.00 0.00 43.59 4.57
2651 5138 1.349026 TCTCCTTGGAACTGGCAAGAG 59.651 52.381 0.00 0.00 0.00 2.85
2808 5299 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2810 5301 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2812 5303 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2814 5305 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2816 5307 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2818 5309 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2820 5311 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2821 5312 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2822 5313 1.155889 AGTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
2823 5314 1.804151 GAAGTGTGTGTGTGTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
2824 5315 1.803555 TGAAGTGTGTGTGTGTGTGTG 59.196 47.619 0.00 0.00 0.00 3.82
2825 5316 1.804151 GTGAAGTGTGTGTGTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
2826 5317 2.076100 AGTGAAGTGTGTGTGTGTGTG 58.924 47.619 0.00 0.00 0.00 3.82
2827 5318 2.076100 CAGTGAAGTGTGTGTGTGTGT 58.924 47.619 0.00 0.00 0.00 3.72
2828 5319 2.076100 ACAGTGAAGTGTGTGTGTGTG 58.924 47.619 0.00 0.00 0.00 3.82
2829 5320 2.076100 CACAGTGAAGTGTGTGTGTGT 58.924 47.619 9.66 0.00 42.52 3.72
2830 5321 1.398041 CCACAGTGAAGTGTGTGTGTG 59.602 52.381 15.31 0.00 45.47 3.82
2831 5322 1.277842 TCCACAGTGAAGTGTGTGTGT 59.722 47.619 15.31 0.00 45.47 3.72
2832 5323 1.665679 GTCCACAGTGAAGTGTGTGTG 59.334 52.381 15.31 2.96 45.47 3.82
2833 5324 1.277842 TGTCCACAGTGAAGTGTGTGT 59.722 47.619 15.31 0.00 45.47 3.72
2834 5325 1.935873 CTGTCCACAGTGAAGTGTGTG 59.064 52.381 15.31 8.38 45.47 3.82
2835 5326 1.134401 CCTGTCCACAGTGAAGTGTGT 60.134 52.381 15.31 0.00 45.47 3.72
2836 5327 1.586422 CCTGTCCACAGTGAAGTGTG 58.414 55.000 10.71 10.71 46.32 3.82
2837 5328 0.469917 CCCTGTCCACAGTGAAGTGT 59.530 55.000 0.62 0.00 42.27 3.55
2838 5329 0.886490 GCCCTGTCCACAGTGAAGTG 60.886 60.000 0.62 0.00 42.27 3.16
2843 5334 1.870055 GCAATGCCCTGTCCACAGTG 61.870 60.000 5.99 0.00 42.27 3.66
2878 5369 5.239525 ACCTGTTTTTGCTTCAGATGTACTC 59.760 40.000 0.00 0.00 0.00 2.59
2879 5370 5.133221 ACCTGTTTTTGCTTCAGATGTACT 58.867 37.500 0.00 0.00 0.00 2.73
2880 5371 5.438761 ACCTGTTTTTGCTTCAGATGTAC 57.561 39.130 0.00 0.00 0.00 2.90
2884 5381 6.076981 CAGTAACCTGTTTTTGCTTCAGAT 57.923 37.500 0.00 0.00 33.80 2.90
2898 5395 5.858381 AGATATGTATGCCACAGTAACCTG 58.142 41.667 0.00 0.00 41.51 4.00
2916 5414 1.215423 GTGCCCCAACCTGGAAGATAT 59.785 52.381 0.00 0.00 40.96 1.63
2932 5430 7.098074 GGAGTATATATGTACTACCTGTGCC 57.902 44.000 11.69 4.30 35.14 5.01
2954 5452 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2955 5453 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2956 5454 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2971 5469 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2972 5470 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2973 5471 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2974 5472 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2975 5473 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2976 5474 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2977 5475 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2983 5481 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2984 5482 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
2985 5483 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2986 5484 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2987 5485 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.